82 results on '"Nurmi K"'
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2. Workforce Scheduling Using the PEAST Algorithm
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Kyngäs, N. R. M., Nurmi, K. J., Kyngäs, J. R., SAE-China, FISITA, Yang, Gi-Chul, editor, Ao, Sio-Iong, editor, Huang, Xu, editor, and Castillo, Oscar, editor
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- 2014
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3. Additional file 1 of The biological activity of serum bacterial lipopolysaccharides associates with disease activity and likelihood of achieving remission in patients with rheumatoid arthritis
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Parantainen, J., Barreto, G., Koivuniemi, R., Kautiainen, H., Nordström, D., Moilanen, E., Hämäläinen, M., Leirisalo-Repo, M., Nurmi, K., and Eklund, K. K.
- Abstract
Additional file 1: Supplementary table 1. Patient cohort characteristics at baseline.
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- 2022
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4. Additional file 5 of The biological activity of serum bacterial lipopolysaccharides associates with disease activity and likelihood of achieving remission in patients with rheumatoid arthritis
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Parantainen, J., Barreto, G., Koivuniemi, R., Kautiainen, H., Nordström, D., Moilanen, E., Hämäläinen, M., Leirisalo-Repo, M., Nurmi, K., and Eklund, K. K.
- Abstract
Additional file 5: Supplementary table 5a-b. Serum TLR4 activity and LPS bioactivity determined after neutralization by polymyxin B.
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- 2022
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5. Additional file 4 of The biological activity of serum bacterial lipopolysaccharides associates with disease activity and likelihood of achieving remission in patients with rheumatoid arthritis
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Parantainen, J., Barreto, G., Koivuniemi, R., Kautiainen, H., Nordström, D., Moilanen, E., Hämäläinen, M., Leirisalo-Repo, M., Nurmi, K., and Eklund, K. K.
- Abstract
Additional file 4: Supplementary table 4. Measured LPS bioactivity and the concentrations of LBP, CD14, and CD163.
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- 2022
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6. Additional file 2 of The biological activity of serum bacterial lipopolysaccharides associates with disease activity and likelihood of achieving remission in patients with rheumatoid arthritis
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Parantainen, J., Barreto, G., Koivuniemi, R., Kautiainen, H., Nordström, D., Moilanen, E., Hämäläinen, M., Leirisalo-Repo, M., Nurmi, K., and Eklund, K. K.
- Abstract
Additional file 2: Supplementary table 2. The number of patients with missing data.
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- 2022
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7. Additional file 3 of The biological activity of serum bacterial lipopolysaccharides associates with disease activity and likelihood of achieving remission in patients with rheumatoid arthritis
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Parantainen, J., Barreto, G., Koivuniemi, R., Kautiainen, H., Nordström, D., Moilanen, E., Hämäläinen, M., Leirisalo-Repo, M., Nurmi, K., and Eklund, K. K.
- Abstract
Additional file 3: Supplementary table 3a-e. Correlations of LPS-related biomarkers with RA disease activity, inflammatory biomarkers, and metabolic factors.
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- 2022
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8. Ethanol induces apoptosis in human mast cells
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Nurmi, K., Methuen, T., Mäki, T., Lindstedt, K.A., Kovanen, P.T., Sandler, C., and Eklund, K.K.
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- 2009
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9. Workforce Scheduling Using the PEAST Algorithm
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Kyngäs, N. R. M., primary, Nurmi, K. J., additional, and Kyngäs, J. R., additional
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- 2013
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10. Loss-of-function mutation in IKZF2 leads to immunodeficiency with dysregulated germinal center reactions and reduction of MAIT cells
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Hetemäki, I. (Iivo), Kaustio, M. (Meri), Kinnunen, M. (Matias), Heikkilä, N. (Nelli), Keskitalo, S. (Salla), Nowlan, K. (Kirsten), Miettinen, S. (Simo), Sarkkinen, J. (Joona), Glumoff, V. (Virpi), Andersson, N. (Noora), Kettunen, K. (Kaisa), Vanhanen, R. (Reetta), Nurmi, K. (Katariina), Eklund, K. K. (Kari K.), Dunkel, J. (Johannes), Mäyränpää, M. I. (Mikko I.), Schlums, H. (Heinrich), Arstila, T. P. (T. Petteri), Kisand, K. (Kai), Bryceson, Y. T. (Yenan T.), Peterson, P. (Pärt), Otava, U. (Ulla), Syrjänen, J. (Jaana), Saarela, J. (Janna), Varjosalo, M. (Markku), Kekäläinen, E. (Eliisa), Hetemäki, I. (Iivo), Kaustio, M. (Meri), Kinnunen, M. (Matias), Heikkilä, N. (Nelli), Keskitalo, S. (Salla), Nowlan, K. (Kirsten), Miettinen, S. (Simo), Sarkkinen, J. (Joona), Glumoff, V. (Virpi), Andersson, N. (Noora), Kettunen, K. (Kaisa), Vanhanen, R. (Reetta), Nurmi, K. (Katariina), Eklund, K. K. (Kari K.), Dunkel, J. (Johannes), Mäyränpää, M. I. (Mikko I.), Schlums, H. (Heinrich), Arstila, T. P. (T. Petteri), Kisand, K. (Kai), Bryceson, Y. T. (Yenan T.), Peterson, P. (Pärt), Otava, U. (Ulla), Syrjänen, J. (Jaana), Saarela, J. (Janna), Varjosalo, M. (Markku), and Kekäläinen, E. (Eliisa)
- Abstract
The Ikaros family transcription factors regulate lymphocyte development. Loss-of-function variants in IKZF1 cause primary immunodeficiency, but Ikaros family members IKZF2 and IKZF3 have not yet been associated with immunodeficiency. Here, we describe a pedigree with a heterozygous truncating variant in IKZF2, encoding the transcriptional activator and repressor Helios, which is highly expressed in regulatory T cells and effector T cells, particularly of the CD8⁺ T cell lineage. Protein-protein interaction analysis revealed that the variant abolished heterodimerization of Helios with Ikaros and Aiolos and also prevented Helios binding to members of the Mi-2/NuRD chromatin remodeling complex. Patients carrying the IKZF2 variant presented with a combined immunodeficiency phenotype characterized by recurrent upper respiratory infections, thrush and mucosal ulcers, and chronic lymphadenopathy. With extensive immunophenotyping, functional assays, and transcriptional analysis, we show that reduced Helios expression was associated with chronic T cell activation and increased production of proinflammatory cytokines both in effector and regulatory T cells. Lymph node histology from patients indicated dysregulated germinal center reactions. Moreover, affected individuals displayed a profound reduction in circulating MAIT cell numbers. In summary, we show that this previously undescribed loss-of-function variant in Helios leads to an immunodeficiency with signs of immune overactivation.
- Published
- 2021
11. The impact of lanthanum doping on the microstructure and colossal permittivity in BaxSr(1-x)TiO3
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Nurmi, K. (Kari), Jantunen, H. (Heli), Juuti, J. (Jari), Nurmi, K. (Kari), Jantunen, H. (Heli), and Juuti, J. (Jari)
- Abstract
In this work BaSrTiO3 with three different Ba/Sr (45/55, 55/45 and 65/35) ratios and lanthanum doping concentrations of 0, 0.2, 0.4 and 0.6 mol.% were studied. Samples were fabricated through the mixed oxide route. The microstructures were analyzed and the phases of the compositions were defined by XRD. The increase in lanthanum doping had a pronounced decreasing effect on the grain size. The temperature dependent dielectric characteristics were measured between 0.1 and 1000 kHz in the temperature range of -68–150 °C. Colossal permittivity was found in all doped samples with a Ba/Sr ratio of 65/35 from which the 0.6 mol. % doping level of lanthanum showed the most promising characteristics with relative permittivity >48,000 and a dielectric loss ≤0.06 over the whole temperature range below 1 kHz. It was found that the relaxation of the colossal permittivity effect exhibited a frequency shift at the Curie temperature.
- Published
- 2021
12. On-call stress among Finnish anaesthetists
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Lindfors, P. M., Nurmi, K. E., Meretoja, O. A., Luukkonen, R. A., Viljanen, A.-M., Leino, T. J., and Härmä, M I.
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- 2006
13. The effect of titanium excess and deficiency on the microstructure and dielectric properties of lanthanum doped Ba0.55Sr0.45TiO3 with colossal permittivity
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Nurmi, K. (Kari), Jantunen, H. (Heli), Juuti, J. (Jari), Nurmi, K. (Kari), Jantunen, H. (Heli), and Juuti, J. (Jari)
- Abstract
The temperature dependent dielectric properties of (Ba0.54875Sr0.44875La0.0025)Ti(1+x)O3 with both an excess and a deficiency of 0.25 mol.% TiO2 were investigated. The samples were prepared by the mixed oxide method and sintered in a conventional oven at temperatures ranging from 1400 °C to 1475 °C. The cubic perovskite structure was confirmed with XRD at room temperature. The sample with an excess of 0.25 mol.% Ti exhibited reduced grain growth while abnormal grain growth was observed for samples without Ti modification. Samples exhibited colossal permittivity for all modified compositions. With a 0.25 mol.% deficiency of Ti a permittivity over 65,000 and a tan δ under 0.05 were measured over a temperature range of −68 °C to 150 °C and a frequency range between 50 kHz and 1 MHz. This paper shows that by fine tuning the composition, materials with new, exciting and widely adjustable dielectric properties can be achieved.
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- 2019
14. Travelling salesman problem tools for microcomputers
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Nurmi, K.
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Scheduling ,Mathematical Models ,Algorithm Analysis ,Research and Development ,Branch and Bound ,Applications Programming ,Problem solving ,Scheduling (Management) -- Models ,Algorithms -- Analysis ,Problem solving - Published
- 1991
15. Preparation of starch betainate: a novel cationic starch derivative
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Granö, H, Yli-Kauhaluoma, J, Suortti, T, Käki, J, and Nurmi, K
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- 2000
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16. Lantaani modifioidun BST:n valmistus ja karakterisointi
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Nurmi, K. (Kari)
- Subjects
Electrical Engineering - Abstract
Tässä työssä tutkittiin lantaani-modifioidun bariumstrontiumtitanaatti (BST) keraamin valmistusta sekä sintrattujen näytteiden rakenteellisia ja dielektrisiä ominaisuuksia. Lantaani-modifioidun BST-keraamin valmistukseen käytetty jauhe muodostettiin käyttäen kahta eri menetelmää. Ensimmäisessä menetelmässä jauhe valmistettiin sekoittamalla lantaanioksidia kaupalliseen BST-jauheeseen. Toisessa menetelmässä lantaanioksidijauhe lisättiin bariumkarbonaattia, strontiumkarbonaattia ja titaanioksidia sisältävään jauheseokseen jonka esireaktio ennen sintrausta muodosti BST koostumuksen. Molemmissa menetelmissä käytettiin BST-koostumusta Ba0.55Sr0.45TiO₃, jota modifioitiin 0–1 mol. % määrällä lantaanioksidia. Valmistetuista jauheista muodostetut keraaminäytteet sintrattiin 1350–1600 °C lämpötilassa. Valmistusta varten karbonaatti- ja oksijauheille suoritettiin DSC/TG mittaukset reaktiolämpötilojen selvittämiseksi. Valmiille jauheille suoritettiin dilatometrimittaukset sopivien sintrauslämpötilojen selvittämiseksi. Lisäksi raaka-aineille ja valmiille jauheille määritettiin partikkelikokojakauma, jotta nähtäisi raaka-aineiden yhteensopivuus ja jauheiden alustava partikkelikoko. Esireagoiduille jauheille ja sintratuille näytteille suoritettiin röntgendiffraktio mittaukset kiderakenteen selvittämiseksi. Dielektriset ominaisuudet mitattiin huoneenlämpötilassa taajuusalueella 0,02–1000 kHz. Mittaustulosten perusteella modifioinnin havaittiin kasvattavan sekä suhteellista permitiivisyyttä, että dielektrisiä häviöitä. Kolossaalisia (>104) suhteellisen permittiivisyyden arvoja havaittiin erityisesti niissä näytteissä jotka valmistettiin raaka-aineiden yhteisen esireagoimisen kautta. 0,25 mol. %:n lantaani-modifioiduissa näytteissä suhteellinen permittiivisyys saavutti matalalla taajuudella yli 200 000:n arvon. 1 mol. %:n lantaani-modifioinnilla permittiivisyyden arvot vastasivat modifioimattomien näytteiden arvoja. Kaikissa näytteissä havaittiin permittiivisyyden kasvun ohessa myös dielektristen häviöiden kasvua. Esimerkiksi 200 000:n suhteellinen permittiivisyys nosti dielektrisen häviön noin 0,6 tasolle. Työssä käytetyn lantaani-modifioinnin havaittiin myös nostavan BST:n sintrautumiseen tarvittavaa lämpötilaa. In this work, lanthanum-modified barium strontium titanate (BST) ceramics was fabricated and the structural and dielectric properties were investigated. Powders for lanthanum-modified BST ceramics were formed by using two different methods. In the first method, the lanthanum oxide was mixed directly with a commercial BST powder. In the second method the BST powders were synthesized from barium carbonate, strontium carbonate, titanium oxide and lanthanum oxide in pre-reaction before sintering. In both cases the BST composition was Ba0.55Sr0.45TiO₃ and lanthanum oxide modification level was 0–1 mol. %. Prepared powders were pressed in to disc shapes and sintered at temperatures ranging from 1350 to 1600 °C. TGA/DSC analysis was conducted on carbonates and powder of carbonate mixtures to determine the reaction temperatures. Calcined powders were analyzed with a dilatometer to determine sintering temperatures. In addition, the powder particle size was determined for the raw-materials and prepared powders to analyse the compatibility between the reagents and to see the initial particle size for the mixed powders. X-ray diffraction measurements were conducted on the calcined powders and sintered samples to determine the crystal structure. Dielectric measurements were performed at room temperature at frequency range of 0.02–1000 kHz. It was found out that modification of BST had a clear impact on the dielectric properties and colossal permittivity values were observed on several modification levels. Especially, samples which were made by pre-reacting all the raw materials in the same process showed colossal values of permittivity. BST sample modified with 0.25 mol. % of lanthanum showed relative permittivity values of >200 000 and tan δ of ~0.6. Samples with lanthanum modification level of 1 mol. % did not show colossal values of permittivity. The increase in relative permittivity was always accompanied with increased dielectric losses. Lanthanum modification was also observed to increase the sintering temperature.
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- 2016
17. Driver rostering for bus transit companies
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Nurmi, K., Kyngäs, J., Post, Gerhard F., and Discrete Mathematics and Mathematical Programming
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EWI-20195 ,METIS-286263 ,Staff scheduling ,Driver rostering ,IR-78735 ,Bus transit scheduling ,Real-world scheduling - Abstract
Staff scheduling has become increasingly important for both the public sector and private companies. Good rosters have many benefits for an organization, such as lower costs, more effective utilization of resources and fairer workloads and distribution of shifts. The process of constructing optimized work timetables for the personnel is an extremely demanding task. Driver rostering, preceded by vehicle scheduling and driver scheduling, is the last phase in the bus transit scheduling process. This paper presents a successful way to schedule days-off on a yearly basis and shifts on a monthly basis in one of the Finnish bus transportation companies. The days-off and shifts are scheduled using an algorithm that includes features from population-based methods, simulated annealing, tabu search and ejection-chains. The generated software has been integrated into a third-party vendor product.
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- 2011
18. Effect of long-range order on elastic properties of Pd0.5Ag0.5 alloy from first-principles
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E. K. Delczeg-Czirjak, E. Nurmi, K. Kokko and L. Vitos
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- 2011
19. Solving scheduling problems for business use using computational intelligence
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Nurmi, K., primary and Kyngas, J., additional
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- 2011
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20. Optimizing Large-Scale Staff Rostering Instances.
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Kyngäs, N., Kyngäs, J., and Nurmi, K.
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TIME perspective ,EMPLOYEES' workload ,DECISION support systems ,PRIVATE companies ,SCHEDULING - Abstract
Good rosters have many benefits for an organization, such as lower costs, more effective utilization of resources and fairer workloads and distribution of shifts. The process of constructing optimized work timetables for the personnel is an extremely demanding task, hence the use of decision support systems for workforce scheduling has become increasingly important for both the public sector and private companies. This paper describes an effective method for optimizing large-scale staff rostering instances. The idea is to divide an instance into smaller units, solve them separately and then combine the results together again. A set of artificial and real-world instances derived from the actual instances solved for various companies are presented. We publish the best solutions we have found using our computational intelligence heuristic called the PEAST algorithm. We invite the workforce scheduling community to challenge our results. This research has contributed to better systems for our industry partner. [ABSTRACT FROM AUTHOR]
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- 2012
21. Scheduling a triple round robin tournament for the finnish national ice hockey league for players under 20.
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Nurmi, K., Kyngas, J., and Goossens, D.
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- 2011
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22. Scheduling the finnish major ice hockey league.
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Kyngas, J. and Nurmi, K.
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- 2009
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23. High-performance liquid chromatographic separation and identification of phenolic compounds from leaves of Betula pubescens and Betula pendula
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Ossipov, V., primary, Nurmi, K., additional, Loponen, J., additional, Haukioja, E., additional, and Pihlaja, K., additional
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- 1996
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24. HPLC isolation and identification of flavonoids from white birch Betula pubescens leaves
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Ossipov, V., primary, Nurmi, K., additional, Loponen, J., additional, Prokopiev, N., additional, Haukioja, E., additional, and Pihlaja, K., additional
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- 1995
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25. Flocculation of Semidilute Calcite Dispersions Induced by Anionic Sodium Polyacrylate−Cationic Starch Complexes
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Nystrom, R. S., Rosenholm, J. B., and Nurmi, K.
- Abstract
Polyelectrolyte complexes (PECs) formed by mixing oppositely charged polyelectrolytes are widely used as flocculation agents of aqueous solid/liquid dispersions. The complexes have been found superior to single polyelectrolytes in showing a substantially wider optimum concentration range for flocculation. In this work the flocculation performance and mechanisms induced by premixed complexes of cationic starch and anionic sodium polyacrylate (NaPA) on semidilute calcite dispersions were investigated by measuring the particle size and the dynamic mobility. The flocculation performance was studied as a function of the ratio of NaPA to starch, and the total amount of polyelectrolyte added. The influence of pretreatment of the calcite dispersions on the complex-induced flocculation was also investigated. The investigation clearly shows that, by using appropriate amounts of premixed NaPA and starch, the flocculation of the calcite dispersions was strongly enhanced compared to the case of using single NaPA or starch, respectively. Several mechanisms are involved in the enhanced flocculation induced by the two oppositely charged polyelectrolytes. These mechanisms are strongly dependent on the ratio of NaPA to starch, and the total amount of polyelectrolytes added. However, interparticle bridging by the polyelectrolyte complexes, and charge neutralization, induced by the deposition of the complexes, were found as the main reasons for the enhanced flocculation. Pretreating the bare calcite with anionic sodium polyacrylate changed the charge characteristics of the calcite from cationic to anionic. Despite the change in charge characteristics, the pretreatment did not drastically change the flocculation behavior of the semidilute calcite dispersions induced by the subsequent addition of premixed polyelectrolyte complexes. However, the pretreatment resulted in a slight shift in the ratio of NaPA to starch required for optimum flocculation.
- Published
- 2003
26. The substitution pattern in cationised and oxidised potato starch granules
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Manelius, R., Buleon, A., Nurmi, K., and Bertoft, E.
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- 2000
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27. Structure of dicarboxyl malto-oligomers isolated from hypochlorite-oxidised potato starch studied by ^1H and ^1^3C NMR spectroscopy
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Teleman, A., Kruus, K., Ammalahti, E., Buchert, J., and Nurmi, K.
- Published
- 1999
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28. Structural characterization of oxidized potato starch
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Zhu, Q., Sjoeholm, R., Nurmi, K., and Bertoft, E.
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- 1998
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29. A framework for a highly constrained sports scheduling problem
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Nurmi, K., Goossens, D., Bartsch, T., Bonomo, F., Briskorn, D., Duran, G., Kyngäs, J., Marenco, J., Ribeiro, C. C., Spieksma, F., Sebastián Urrutia, and Wolf, R.
30. Gain-of-function CEBPE mutation causes noncanonical autoinflammatory inflammasomopathy
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Sergey Nejentsev, Asko Järvinen, Outi Vaarala, Salla Keskitalo, Markku Varjosalo, Giovanni Scala, Dan Nordström, Biswajyoti Sahu, James Curtis, Katariina Nurmi, Annukka Jouppila, Annamari Ranki, Päivi Saavalainen, Elisabet Einarsdottir, Juha Kere, Tom Pettersson, Panu E. Kovanen, Helena Vihinen, Kaarel Krjutškov, Dario Greco, Vincent Plagnol, Kristiina Rajamäki, Jussi Taipale, Robert Flaumenhaft, Christopher L. Fogarty, Mari Muurinen, Markku Lehto, Helka Göös, Luigi D. Notarangelo, Kari K. Eklund, Mikko Seppänen, Xiaonan Liu, Goos, H., Fogarty, C. L., Sahu, B., Plagnol, V., Rajamaki, K., Nurmi, K., Liu, X., Einarsdottir, E., Jouppila, A., Pettersson, T., Vihinen, H., Krjutskov, K., Saavalainen, P., Jarvinen, A., Muurinen, M., Greco, D., Scala, G., Curtis, J., Nordstrom, D., Flaumenhaft, R., Vaarala, O., Kovanen, P. E., Keskitalo, S., Ranki, A., Kere, J., Lehto, M., Notarangelo, L. D., Nejentsev, S., Eklund, K. K., Varjosalo, M., Taipale, J., Seppanen, M. R. J., Nezhentsev, Sergey [0000-0002-7528-4461], Apollo - University of Cambridge Repository, Institute of Biotechnology, Helsinki Institute of Life Science HiLIFE, Joint Activities, HUS Abdominal Center, Nefrologian yksikkö, University of Helsinki, Diabetes and Obesity Research Program, Clinicum, Research Programs Unit, Genome-Scale Biology (GSB) Research Program, Faculty of Medicine, Biosciences, Research Programme of Molecular Medicine, Päivi Marjaana Saavalainen / Principal Investigator, HUS Helsinki and Uusimaa Hospital District, HUS Internal Medicine and Rehabilitation, University Management, Department of Medicine, Electron Microscopy, Immunobiology Research Program, Immunomics, Department of Medical and Clinical Genetics, HUS Inflammation Center, Infektiosairauksien yksikkö, STEMM - Stem Cells and Metabolism Research Program, Reumatologian yksikkö, HUS Children and Adolescents, Children's Hospital, HUSLAB, Medicum, Department of Pathology, Department of Dermatology, Allergology and Venereology, Juha Kere / Principal Investigator, Molecular Systems Biology, and Jussi Taipale / Principal Investigator
- Subjects
Male ,0301 basic medicine ,Inflammasomes ,Neutrophils ,pyrin domain-containing 3 protein ,gain-of-function mutation ,Pyrin domain ,ACTIVATION ,0302 clinical medicine ,ABDOMINAL-PAIN ,autoinflammatory disease ,Transcription (biology) ,NLR family ,INFECTION ,Immunology and Allergy ,chemotaxis ,Cells, Cultured ,BINDING-PROTEIN-EPSILON ,Ccaat-enhancer-binding proteins ,Inflammasome ,interferon ,C/EBP-EPSILON ,Pedigree ,Up-Regulation ,3. Good health ,Chromatin ,Cell biology ,interferons ,neomorphic mutation ,DIFFERENTIATION ,Immunologic deficiency syndrome ,Caspases ,Gain of Function Mutation ,Female ,hereditary ,medicine.drug ,Immunology ,KAPPA-B ,Biology ,03 medical and health sciences ,inflammasome ,NLR Family, Pyrin Domain-Containing 3 Protein ,medicine ,Humans ,GRANULE DEFICIENCY ,Transcription factor ,Aged ,Inflammation ,Sequence Analysis, RNA ,Gene Expression Profiling ,Macrophages ,Immunologic Deficiency Syndromes ,CEBPE ,autoinflammatory diseases ,GENE ,030104 developmental biology ,3121 General medicine, internal medicine and other clinical medicine ,CCAAT-Enhancer-Binding Proteins ,chemotaxi ,Chromatin immunoprecipitation ,ATTACKS ,030215 immunology - Abstract
Background: CCAAT enhancer-binding protein epsilon (C/EBP epsilon) is a transcription factor involved in late myeloid lineage differentiation and cellular function. The only previously known disorder linked to C/EBP epsilon is autosomal recessive neutrophil-specific granule deficiency leading to severely impaired neutrophil function and early mortality. Objective: The aim of this study was to molecularly characterize the effects of C/EBP epsilon transcription factor Arg219His mutation identified in a Finnish family with previously genetically uncharacterized autoinflammatory and immunodeficiency syndrome. Methods: Genetic analysis, proteomics, genome-wide transcriptional profiling by means of RNA-sequencing, chromatin immunoprecipitation (ChIP) sequencing, and assessment of the inflammasome function of primary macrophages were performed. Results: Studies revealed a novel mechanism of genome-wide gain-of-function that dysregulated transcription of 464 genes. Mechanisms involved dysregulated noncanonical inflammasome activation caused by decreased association with transcriptional repressors, leading to increased chromatin occupancy and considerable changes in transcriptional activity, including increased expression of NLR family, pyrin domain-containing 3 protein (NLRP3) and constitutively expressed caspase-5 in macrophages. Conclusion: We describe a novel autoinflammatory disease with defective neutrophil function caused by a homozygous Arg219His mutation in the transcription factor C/EBP epsilon. Mutated C/EBPe acts as a regulator of both the inflammasome and interferome, and the Arg219His mutation causes the first human monogenic neomorphic and noncanonical inflammasomopathy/immunodeficiency. The mechanism, including widely dysregulated transcription, is likely not unique for C/EBP epsilon. Similar multiomics approaches should also be used in studying other transcription factor-associated diseases.
- Published
- 2019
31. Fibrinolysis associated proteins and lipopolysaccharide bioactivity in plasma and cerebrospinal fluid in multiple sclerosis.
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Lehikoinen J, Strandin T, Parantainen J, Nurmi K, Eklund KK, Rivera FJ, Vaheri A, and Tienari PJ
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- Humans, Female, Male, Adult, Middle Aged, Tissue Plasminogen Activator cerebrospinal fluid, Tissue Plasminogen Activator blood, Fibrin Fibrinogen Degradation Products analysis, Fibrin Fibrinogen Degradation Products metabolism, Young Adult, Lipopolysaccharides, Multiple Sclerosis cerebrospinal fluid, Multiple Sclerosis blood, Plasminogen Activator Inhibitor 1 cerebrospinal fluid, Plasminogen Activator Inhibitor 1 blood, Fibrinolysis physiology
- Abstract
The coagulation cascade and fibrinolysis have links with neuroinflammation and increased activation of the coagulation system has been reported in MS patients. We quantified levels of D-dimer, tissue plasminogen activator (tPA), plasminogen activator inhibitor-1 (PAI-1) and the bioactivity of bacterial lipopolysaccharide (LPS) in cerebrospinal fluid (CSF) and plasma from newly diagnosed untreated MS patients and controls. These molecules showed multiple correlations with each other as well as with age, HLA-DRB1*15:01, body-mass-index and CSF IgG. Our results confirm previous findings of increased plasma PAI-1 and LPS in MS patients compared to controls indicating changes in platelet function and gut permeability in MS., Competing Interests: Declaration of competing interest JL: Congress expenses, Merck. PJT: Lecture and consulting fees Roche, Merck, Biogen, Novartis, Janssen, Sanofi, Alexion; congress expenses Biogen, Merck. KKE: Lecture fees: Novartis, Celltrion, Sobi., (Copyright © 2024 The Authors. Published by Elsevier B.V. All rights reserved.)
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- 2024
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32. Epstein-Barr Virus in the Cerebrospinal Fluid and Blood Compartments of Patients With Multiple Sclerosis and Controls.
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Lehikoinen J, Nurmi K, Ainola M, Clancy J, Nieminen JK, Jansson L, Vauhkonen H, Vaheri A, Smura T, Laakso SM, Eklund KK, and Tienari PJ
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- Humans, Herpesvirus 4, Human, DNA, Viral, RNA, Viral, Epstein-Barr Virus Infections complications, Multiple Sclerosis
- Abstract
Background and Objectives: Epstein-Barr virus (EBV) infection is a major risk factor of multiple sclerosis (MS). We examined the presence of EBV DNA in the CSF and blood of patients with MS and controls. We analyzed whether EBV DNA is more common in the CSF of patients with MS than in controls and estimated the proportions of EBV-positive B cells in the CSF and blood., Methods: CSF supernatants and cells were collected at diagnostic lumbar punctures from 45 patients with MS and 45 HLA-DR15 matched controls with other conditions, all participants were EBV seropositive. Cellular DNA was amplified by Phi polymerase targeting both host and viral DNA, and representative samples were obtained in 28 cases and 28 controls. Nonamplified DNA from CSF cells (14 cases, 14 controls) and blood B cells (10 cases, 10 controls) were analyzed in a subset of participants. Multiple droplet digital PCR (ddPCR) runs were performed per sample to assess the cumulative EBV positivity rate. To detect viral RNA as a sign of activation, RNA sequencing was performed in blood CD4-positive, CD8-positive, and CD19-positive cells from 21 patients with MS and 3 controls., Results: One of the 45 patients with MS and none of the 45 controls were positive for EBV DNA in CSF supernatants (1 mL). CSF cellular DNA was analyzed in 8 independent ddPCRs: EBV DNA was detected at least once in 18 (64%) of the 28 patients with MS and in 15 (54%) of the 28 controls ( p = 0.59, Fisher test). The cumulative EBV positivity increased steadily up to 59% in the successive ddPCRs, suggesting that all individuals would have reached EBV positivity in the CSF cells, if more DNA would have been analyzed. The estimated proportion of EBV-positive B cells was >1/10,000 in both the CSF and blood. We did not detect viral RNA, except from endogenous retroviruses, in the blood lymphocyte subpopulations., Discussion: EBV-DNA is equally detectable in the CSF cells of both patients with MS and controls with ddPCR, and the probabilistic approach indicates that the true positivity rate approaches 100% in EBV-positive individuals. The proportion of EBV-positive B cells seems higher than previously estimated.
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- 2024
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33. Truncating NFKB1 variants cause combined NLRP3 inflammasome activation and type I interferon signaling and predispose to necrotizing fasciitis.
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Nurmi K, Silventoinen K, Keskitalo S, Rajamäki K, Kouri VP, Kinnunen M, Jalil S, Maldonado R, Wartiovaara K, Nievas EI, Denita-Juárez SP, Duncan CJA, Kuismin O, Saarela J, Romo I, Martelius T, Parantainen J, Beklen A, Bilicka M, Matikainen S, Nordström DC, Kaustio M, Wartiovaara-Kautto U, Kilpivaara O, Klein C, Hauck F, Jahkola T, Hautala T, Varjosalo M, Barreto G, Seppänen MRJ, and Eklund KK
- Subjects
- Humans, Inflammasomes metabolism, NLR Family, Pyrin Domain-Containing 3 Protein genetics, NLR Family, Pyrin Domain-Containing 3 Protein metabolism, Immunity, Innate, Inflammation metabolism, NF-kappa B p50 Subunit, Fasciitis, Necrotizing, Interferon Type I
- Abstract
In monogenic autoinflammatory diseases, mutations in genes regulating innate immune responses often lead to uncontrolled activation of inflammasome pathways or the type I interferon (IFN-I) response. We describe a mechanism of autoinflammation potentially predisposing patients to life-threatening necrotizing soft tissue inflammation. Six unrelated families are identified in which affected members present with necrotizing fasciitis or severe soft tissue inflammations. Exome sequencing reveals truncating monoallelic loss-of-function variants of nuclear factor κ light-chain enhancer of activated B cells (NFKB1) in affected patients. In patients' macrophages and in NFKB1-variant-bearing THP-1 cells, activation increases both interleukin (IL)-1β secretion and IFN-I signaling. Truncation of NF-κB1 impairs autophagy, accompanied by the accumulation of reactive oxygen species and reduced degradation of inflammasome receptor nucleotide-binding oligomerization domain, leucine-rich repeat-containing protein 3 (NLRP3), and Toll/IL-1 receptor domain-containing adaptor protein inducing IFN-β (TRIF), thus leading to combined excessive inflammasome and IFN-I activity. Many of the patients respond to anti-inflammatory treatment, and targeting IL-1β and/or IFN-I signaling could represent a therapeutic approach for these patients., Competing Interests: Declaration of interests C.J.A.D. has provided consultative advice to Synairgen on behalf of Newcastle University., (Copyright © 2024 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2024
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34. Single-cell characterisation of tissue homing CD4 + and CD8 + T cell clones in immune-mediated refractory arthritis.
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Bhattacharya D, Theodoropoulos J, Nurmi K, Juutilainen T, Eklund KK, Koivuniemi R, Kelkka T, Mustjoki S, and Lönnberg T
- Subjects
- Humans, Synovial Membrane, Clone Cells, Amino Acid Sequence, CD4-Positive T-Lymphocytes metabolism, CD8-Positive T-Lymphocytes metabolism, Arthritis metabolism, Arthritis pathology
- Abstract
Background: Immune-mediated arthritis is a group of autoinflammatory diseases, where the patient's own immune system attacks and destroys synovial joints. Sustained remission is not always achieved with available immunosuppressive treatments, warranting more detailed studies of T cell responses that perpetuate synovial inflammation in treatment-refractory patients., Methods: In this study, we investigated CD4 + and CD8 + T lymphocytes from the synovial tissue and peripheral blood of patients with treatment-resistant immune-mediated arthritis using paired single-cell RNA and TCR-sequencing. To gain insights into the trafficking of clonal families, we compared the phenotypes of clones with the exact same TCRß amino acid sequence between the two tissues., Results: Our results show that both CD4 + and CD8 + T cells display a more activated and inflamed phenotype in the synovial tissue compared to peripheral blood both at the population level and within individual T cell families. Furthermore, we found that both cell subtypes exhibited clonal expansion in the synovial tissue., Conclusions: Our findings suggest that the local environment in the synovium drives the proliferation of activated cytotoxic T cells, and both CD4 + and CD8 + T cells may contribute to tissue destruction and disease pathogenesis., (© 2024. The Author(s).)
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- 2024
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35. Inflammation and Neutrophil Oxidative Burst in a Family with NFKB1 p.R157X LOF and Sterile Necrotizing Fasciitis.
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Santaniemi W, Åström P, Glumoff V, Pernaa N, Tallgren EN, Palosaari S, Nissinen A, Kaustio M, Kuismin O, Saarela J, Nurmi K, Eklund KK, Seppänen MRJ, and Hautala T
- Subjects
- Humans, Neutrophils metabolism, Respiratory Burst, Inflammation genetics, Inflammation metabolism, NF-kappa B p50 Subunit genetics, NF-kappa B metabolism, Fasciitis, Necrotizing genetics
- Abstract
Loss-of-function (LOF) mutations in NFKB1, coding for p105, may cause common variable immunodeficiency due to dysregulation of nuclear factor kappa-light-chain-enhancer of activated B cells (NF-κΒ) pathway. Monoallelic LOF variants of NFKB1 can predispose to uncontrolled inflammation including sterile necrotizing fasciitis or pyoderma gangrenosum. In this study, we explored the impact of a heterozygous NFKB1 c.C936T/p.R157X LOF variant on immunity in sterile fasciitis patients and their family members. The p50 or p105 protein levels were reduced in all variant carriers. Interleukin-1β (IL-1β) and interleukin-8 (IL-8) levels were elevated in vitro, potentially contributing to the very high neutrophil counts observed during fasciitis episodes. Phosphorylation of p65/RelA was reduced in p.R157X neutrophils suggesting defective activation of canonical NF-κB. Oxidative burst after NF-κB-independent phorbol 12-myristate 13-acetate (PMA) stimulation was similar in both p.R157X and control neutrophils. Comparable amounts of nicotinamide adenine dinucleotide phosphate (NADPH) oxidase complex subunits were found in p.R157X and control neutrophils. However, a compromised oxidative burst was observed in p.R157X neutrophils following activation of NF-κB-dependent mechanisms following stimulation of toll-like receptor 2 (TLR2) and Dectin-1. Neutrophil extracellular trap formation was not affected by p.R157X. In summary, the NFKB1 c.C936T/p.R157X LOF variant has an impact on inflammation and neutrophil function and may play a role in the pathogenesis of sterile necrotizing fasciitis., (© 2023. The Author(s).)
- Published
- 2023
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36. Watson-Crick Base Pairing of N-Methoxy-1,3-Oxazinane (MOANA) Nucleoside Analogues within Double-Helical DNA.
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Afari MNK, Nurmi K, Virta P, and Lönnberg T
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- Base Pairing, Oligonucleotides chemistry, Oligodeoxyribonucleotides, Nucleosides, DNA chemistry
- Abstract
Hairpin oligodeoxynucleotides incorporating a (2R,3S)-4-(methoxyamino)butane-1,2,3-triol residue in the middle of the double-helical stem and opposite to either one of the canonical nucleobases or an abasic 2-(hydroxymethyl)tetrahydrofuran-3-ol spacer were synthesized. Under mildly acidic conditions, aromatic aldehydes reacted reversibly with these oligonucleotides, converting the (2R,3S)-4-(methoxyamino)butane-1,2,3-triol unit into a 2-aryl-N-methoxy-1,3-oxazinane nucleoside analogue. The equilibrium of this reaction was found to be dependent on both the aldehyde and the nucleobase opposite to the modified residue. 9-Formyl-9-deazaadenine, combining a large stacking surface with an array of hydrogen bond donors and acceptors, showed the highest affinity as well as selectivity consistent with the rules of Watson-Crick base pairing. 5-Formyluracil or indole-3-carbaldehyde, lacking in either stacking or hydrogen bonding ability, were incorporated with a much lower affinity and selectivity., (© 2023The Authors. Published by Wiley-VCH GmbH.)
- Published
- 2023
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37. IL-17A and TNF synergistically drive expression of proinflammatory mediators in synovial fibroblasts via IκBζ-dependent induction of ELF3.
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Kouri VP, Olkkonen J, Nurmi K, Peled N, Ainola M, Mandelin J, Nordström DC, and Eklund KK
- Subjects
- Humans, Interleukin-17 pharmacology, Interleukin-17 metabolism, HEK293 Cells, RNA, Small Interfering pharmacology, RNA, Messenger metabolism, Fibroblasts metabolism, Synovial Membrane metabolism, Cells, Cultured, Tumor Necrosis Factor-alpha pharmacology, Tumor Necrosis Factor-alpha metabolism, DNA-Binding Proteins genetics, DNA-Binding Proteins metabolism, Transcription Factors metabolism, Proto-Oncogene Proteins c-ets metabolism, Proto-Oncogene Proteins c-ets pharmacology, NF-kappa B, Arthritis metabolism
- Abstract
Objective: IL-17A and TNF act in synergy to induce proinflammatory mediators in synovial fibroblasts thus contributing to diseases associated with chronic arthritis. Many of these factors are regulated by transcription factor E74-like factor-3 (ELF3). Therefore, we sought to investigate ELF3 as a downstream target of IL-17A and TNF signalling and to characterize its role in the molecular mechanism of synergy between IL-17A and TNF., Methods: Regulation of ELF3 expression by IL-17A and TNF was studied in synovial fibroblasts of RA and OA patients and RA synovial explants. Signalling leading to ELF3 mRNA induction and the impact of ELF3 on the response to IL-17A and TNF were studied using siRNA, transient overexpression and signalling inhibitors in synovial fibroblasts and HEK293 cells., Results: ELF3 was marginally affected by IL-17A or TNF alone, but their combination resulted in high and sustained expression. ELF3 expression was regulated by the nuclear factor-κB (NF-κB) pathway and CCAAT/enhancer-binding protein β (C/EBPβ), but its induction required synthesis of the NF-κB co-factor IκB (inhibitor of NF-κB) ζ. siRNA-mediated depletion of ELF3 attenuated the induction of cytokines and matrix metalloproteinases by the combination of IL-17A and TNF. Overexpression of ELF3 or IκBζ showed synergistic effect with TNF in upregulating expression of chemokine (C-C motif) ligand 8 (CCL8), and depletion of ELF3 abrogated CCL8 mRNA induction by the combination of IκBζ overexpression and TNF., Conclusion: Altogether, our results establish ELF3 as an important mediator of the synergistic effect of IL-17A and TNF in synovial fibroblasts. The findings provide novel information of the pathogenic mechanisms of IL-17A in chronic arthritis and implicate ELF3 as a potential therapeutic target., (© The Author(s) 2022. Published by Oxford University Press on behalf of the British Society for Rheumatology.)
- Published
- 2023
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38. Lipopolysaccharide Primes Human Macrophages for Noncanonical Inflammasome-Induced Extracellular Vesicle Secretion.
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Cypryk W, Czernek L, Horodecka K, Chrzanowski J, Stańczak M, Nurmi K, Bilicka M, Gadzinowski M, Walczak-Drzewiecka A, Stensland M, Eklund K, Fendler W, Nyman TA, and Matikainen S
- Subjects
- Humans, Caspases metabolism, Escherichia coli metabolism, Inflammasomes metabolism, Nerve Growth Factors metabolism, NLR Family, Pyrin Domain-Containing 3 Protein metabolism, Toll-Like Receptor 4 metabolism, Extracellular Vesicles metabolism, Lipopolysaccharides pharmacology, Macrophages metabolism
- Abstract
Human macrophages secrete extracellular vesicles (EVs) loaded with numerous immunoregulatory proteins. Vesicle-mediated protein secretion in macrophages is regulated by poorly characterized mechanisms; however, it is now known that inflammatory conditions significantly alter both the quantities and protein composition of secreted vesicles. In this study, we employed high-throughput quantitative proteomics to characterize the modulation of EV-mediated protein secretion during noncanonical caspase-4/5 inflammasome activation via LPS transfection. We show that human macrophages activate robust caspase-4-dependent EV secretion upon transfection of LPS, and this process is also partially dependent on NLRP3 and caspase-5. A similar effect occurs with delivery of the LPS with Escherichia coli-derived outer membrane vesicles. Moreover, sensitization of the macrophages through TLR4 by LPS priming prior to LPS transfection dramatically augments the EV-mediated protein secretion. Our data demonstrate that this process differs significantly from canonical inflammasome activator ATP-induced vesiculation, and it is dependent on the autocrine IFN signal associated with TLR4 activation. LPS priming preceding the noncanonical inflammasome activation significantly enhances vesicle-mediated secretion of inflammasome components caspase-1, ASC, and lytic cell death effectors GSDMD, MLKL, and NINJ1, suggesting that inflammatory EV transfer may exert paracrine effects in recipient cells. Moreover, using bioinformatics methods, we identify 15-deoxy-Δ12,14-PGJ2 and parthenolide as inhibitors of caspase-4-mediated inflammation and vesicle secretion, indicating new therapeutic potential of these anti-inflammatory drugs., (Copyright © 2023 by The American Association of Immunologists, Inc.)
- Published
- 2023
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39. Prospective Cancer Therapies Using Stimuli-Responsive DNA Nanostructures.
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Seitz I, Shaukat A, Nurmi K, Ijäs H, Hirvonen J, Santos HA, Kostiainen MA, and Linko V
- Subjects
- Humans, Antineoplastic Agents chemistry, Antineoplastic Agents therapeutic use, DNA chemistry, DNA therapeutic use, Drug Delivery Systems, Nanostructures chemistry, Nanostructures therapeutic use, Neoplasms drug therapy, Neoplasms metabolism
- Abstract
Nanostructures based on DNA self-assembly present an innovative way to address the increasing need for target-specific delivery of therapeutic molecules. Currently, most of the chemotherapeutics being used in clinical practice have undesired and exceedingly high off-target toxicity. This is a challenge in particular for small molecules, and hence, developing robust and effective methods to lower these side effects and enhance the antitumor activity is of paramount importance. Prospectively, these issues could be tackled with the help of DNA nanotechnology, which provides a route for the fabrication of custom, biocompatible, and multimodal structures, which can, to some extent, resist nuclease degradation and survive in the cellular environment. Similar to widely employed liposomal products, the DNA nanostructures (DNs) are loaded with selected drugs, and then by employing a specific stimulus, the payload can be released at its target region. This review explores several strategies and triggers to achieve targeted delivery of DNs. Notably, different modalities are explained through which DNs can interact with their respective targets as well as how structural changes triggered by external stimuli can be used to achieve the display or release of the cargo. Furthermore, the prospects and challenges of this technology are highlighted., (© 2021 Wiley-VCH GmbH.)
- Published
- 2021
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40. Loss-of-function mutation in IKZF2 leads to immunodeficiency with dysregulated germinal center reactions and reduction of MAIT cells.
- Author
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Hetemäki I, Kaustio M, Kinnunen M, Heikkilä N, Keskitalo S, Nowlan K, Miettinen S, Sarkkinen J, Glumoff V, Andersson N, Kettunen K, Vanhanen R, Nurmi K, Eklund KK, Dunkel J, Mäyränpää MI, Schlums H, Arstila TP, Kisand K, Bryceson YT, Peterson P, Otava U, Syrjänen J, Saarela J, Varjosalo M, and Kekäläinen E
- Subjects
- Adult, Aged, Female, Germinal Center immunology, Humans, Ikaros Transcription Factor blood, Ikaros Transcription Factor genetics, Male, Middle Aged, Young Adult, Ikaros Transcription Factor immunology, Mucosal-Associated Invariant T Cells immunology
- Abstract
The Ikaros family transcription factors regulate lymphocyte development. Loss-of-function variants in IKZF1 cause primary immunodeficiency, but Ikaros family members IKZF2 and IKZF3 have not yet been associated with immunodeficiency. Here, we describe a pedigree with a heterozygous truncating variant in IKZF2 , encoding the transcriptional activator and repressor Helios, which is highly expressed in regulatory T cells and effector T cells, particularly of the CD8
+ T cell lineage. Protein-protein interaction analysis revealed that the variant abolished heterodimerization of Helios with Ikaros and Aiolos and also prevented Helios binding to members of the Mi-2/NuRD chromatin remodeling complex. Patients carrying the IKZF2 variant presented with a combined immunodeficiency phenotype characterized by recurrent upper respiratory infections, thrush and mucosal ulcers, and chronic lymphadenopathy. With extensive immunophenotyping, functional assays, and transcriptional analysis, we show that reduced Helios expression was associated with chronic T cell activation and increased production of proinflammatory cytokines both in effector and regulatory T cells. Lymph node histology from patients indicated dysregulated germinal center reactions. Moreover, affected individuals displayed a profound reduction in circulating MAIT cell numbers. In summary, we show that this previously undescribed loss-of-function variant in Helios leads to an immunodeficiency with signs of immune overactivation.- Published
- 2021
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41. Hydroxychloroquine reduces interleukin-6 levels after myocardial infarction: The randomized, double-blind, placebo-controlled OXI pilot trial.
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Ulander L, Tolppanen H, Hartman O, Rissanen TT, Paakkanen R, Kuusisto J, Anttonen O, Nieminen T, Yrjölä J, Ryysy R, Drews T, Utriainen S, Karjalainen P, Anttila I, Nurmi K, Silventoinen K, Koskinen M, Kovanen PT, Lehtonen J, Eklund KK, and Sinisalo J
- Subjects
- Double-Blind Method, Humans, Hydroxychloroquine, Pilot Projects, Treatment Outcome, Interleukin-6, Myocardial Infarction diagnosis, Myocardial Infarction drug therapy
- Abstract
Objectives: To determine the anti-inflammatory effect and safety of hydroxychloroquine after acute myocardial infarction., Method: In this multicenter, double-blind, placebo-controlled OXI trial, 125 myocardial infarction patients were randomized at a median of 43 h after hospitalization to receive hydroxychloroquine 300 mg (n = 64) or placebo (n = 61) once daily for 6 months and, followed for an average of 32 months. Laboratory values were measured at baseline, 1, 6, and 12 months., Results: The levels of interleukin-6 (IL-6) were comparable at baseline between study groups (p = 0.18). At six months, the IL-6 levels were lower in the hydroxychloroquine group (p = 0.042, between groups), and in the on-treatment analysis, the difference at this time point was even more pronounced (p = 0.019, respectively). The high-sensitivity C-reactive protein levels did not differ significantly between study groups at any time points. Eleven patients in the hydroxychloroquine group and four in the placebo group had adverse events leading to interruption or withdrawal of study medication, none of which was serious (p = 0.10, between groups)., Conclusions: In patients with myocardial infarction, hydroxychloroquine reduced IL-6 levels significantly more than did placebo without causing any clinically significant adverse events. A larger randomized clinical trial is warranted to prove the potential ability of hydroxychloroquine to reduce cardiovascular endpoints after myocardial infarction., Competing Interests: Declaration of Competing Interest JS reports personal fees from Abbott, Amgen, and Bayer and a grant from AstraZeneca. PTK reports personal fees from Amgen, Novartis, Raisio Group, and Sanofi., (Copyright © 2021 The Authors. Published by Elsevier B.V. All rights reserved.)
- Published
- 2021
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42. Native and oxidised lipoproteins negatively regulate the serum amyloid A-induced NLRP3 inflammasome activation in human macrophages.
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Nurmi K, Niemi K, Kareinen I, Silventoinen K, Lorey MB, Chen Y, Kouri VP, Parantainen J, Juutilainen T, Öörni K, Kovanen PT, Nordström D, Matikainen S, and Eklund KK
- Abstract
Objectives: The NLRP3 inflammasome plays a key role in arterial wall inflammation. In this study, we elucidated the role of serum lipoproteins in the regulation of NLRP3 inflammasome activation by serum amyloid A (SAA) and other inflammasome activators., Methods: The effect of lipoproteins on the NLRP3 inflammasome activation was studied in primary human macrophages and THP-1 macrophages. The effect of oxidised low-density lipoprotein (LDL) was examined in an in vivo mouse model of SAA-induced peritoneal inflammation., Results: Native and oxidised high-density lipoproteins (HDL
3 ) and LDLs inhibited the interaction of SAA with TLR4. HDL3 and LDL inhibited the secretion of interleukin (IL)-1β and tumor necrosis factor by reducing their transcription. Oxidised forms of these lipoproteins reduced the secretion of mature IL-1β also by inhibiting the activation of NLRP3 inflammasome induced by SAA, ATP, nigericin and monosodium urate crystals. Specifically, oxidised LDL was found to inhibit the inflammasome complex formation. No cellular uptake of lipoproteins was required, nor intact lipoprotein particles for the inhibitory effect, as the lipid fraction of oxidised LDL was sufficient. The inhibition of NLRP3 inflammasome activation by oxidised LDL was partially dependent on autophagy. Finally, oxidised LDL inhibited the SAA-induced peritoneal inflammation and IL-1β secretion in vivo ., Conclusions: These findings reveal that both HDL3 and LDL inhibit the proinflammatory activity of SAA and this inhibition is further enhanced by lipoprotein oxidation. Thus, lipoproteins possess major anti-inflammatory functions that hinder the NLRP3 inflammasome-activating signals, particularly those exerted by SAA, which has important implications in the pathogenesis of cardiovascular diseases., Competing Interests: The authors declare no conflicts of interest., (© 2021 The Authors. Clinical & Translational Immunology published by John Wiley & Sons Australia, Ltd on behalf of Australian and New Zealand Society for Immunology Inc.)- Published
- 2021
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43. Histamine H 3 Receptor Signaling Regulates the NLRP3 Inflammasome Activation in C2C12 Myocyte During Myogenic Differentiation.
- Author
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Chen Y, Ma Y, Feng JJ, Wang YH, Li TF, Nurmi K, Eklund KK, and Wen JG
- Abstract
NLRP3 inflammasome has been implicated in impaired post-injury muscle healing and in muscle atrophy. Histamine receptors play an important role in inflammation, but the role of histamine H
3 receptor (H3 R) in myocyte regeneration and in the regulation of NLRP3 inflammasome is not known. We studied the effects of H3 R signaling on C2C12 myocyte viability, apoptosis, and tumor necrosis factor alpha (TNFα)-induced NLRP3 inflammasome activation during striated myogenic differentiation at three time points (days 0, 3, and 6). Expression of Nlrp3 , interleukin-1β (IL-1β), and myogenesis markers were determined. TNFα reduced overall viability of C2C12 cells, and exposure to TNFα induced apoptosis of cells at D6. Activation of H3 R had no effect on viability or apoptosis, whereas inhibition of H3 R increased TNFα-induced apoptosis. Stimulation of C2C12 cells with TNFα increased Nlrp3 mRNA expression at D3 and D6. Moreover, TNFα reduced the expression of myogenesis markers MyoD1, Myogenin, and Myosin-2 at D3 and D6. H3 R attenuated TNFα-induced expression of Nlrp3 and further inhibited the myogenesis marker expression; while H3 R -blockage enhanced the proinflammatory effects of TNFα and increased the myogenesis marker expression. TNFα-induced secretion of mature IL-1β was dependent on the activation of the NLRP3 inflammasome, as shown by the reduced secretion of mature IL-1β upon treatment of the cells with the small molecule inhibitor of the NLRP3 inflammasome (MCC950). The activation of H3 R reduced TNFα-induced IL-1β secretion, while the H3 R blockage had an opposite effect. In conclusion, the modulation of H3 R activity regulates the effects of TNFα on C2C12 myocyte differentiation and TNFα-induced activation of NLRP3 inflammasome. Thus, H3 R signaling may represent a novel target for limiting postinjury muscle inflammation and muscle atrophy., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2021 Chen, Ma, Feng, Wang, Li, Nurmi, Eklund and Wen.)- Published
- 2021
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44. Tumor necrosis factor primes and metal particles activate the NLRP3 inflammasome in human primary macrophages.
- Author
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Jämsen E, Pajarinen J, Kouri VP, Rahikkala A, Goodman SB, Manninen M, Nordström DC, Eklund KK, and Nurmi K
- Subjects
- Humans, Interleukin-1beta, Macrophages, Phagocytosis, Tumor Necrosis Factor-alpha, Inflammasomes, NLR Family, Pyrin Domain-Containing 3 Protein
- Abstract
Aseptic loosening of total joint replacements is driven by a macrophage-mediated inflammatory reaction to implant-derived wear particles. Phagocytosis of implant debris has been suggested to activate the NLRP3 inflammasome leading to secretion of interleukin (IL)-1β. However, factors and molecular mechanisms driving the particle-induced inflammasome activation are yet to be fully elucidated. In this study, we investigated the inflammasome response of human primary macrophages to titanium, chromium, and molybdenum particles in vitro. We observed that particles alone were not sufficient to induce IL-1β secretion, but an additional priming signal-such as bacterial lipopolysaccharide (LPS)-was required to license the inflammasome activation. By using specific inhibitors against the inflammasome signaling pathway, we demonstrate that the particle-induced IL-1β secretion depended upon activation of the NLRP3 inflammasome. We further hypothesized that tumor necrosis factor (TNF) could substitute for LPS as a priming signal, and found that particle stimulation together with preceding TNF treatment resulted in inflammasome-dependent IL-1β production as well. Our results show that the NLRP3 inflammasome mediates wear particle responses in human primary macrophages, and its activation does not necessarily require the presence of bacterial components, but can be induced under aseptic conditions by TNF priming. STATEMENT OF SIGNIFICANCE: This study was conducted to elucidate the molecular mechanisms of metal particle-induced IL-1β secretion in human primary macrophages. Production of this pro-inflammatory mediator from wear particle-activated macrophages has been associated with increased bone loss around total joint replacements-a condition eventually requiring revision surgery. Our results confirm that together with a co-stimulatory priming signal, particles of common implant metals elicit macrophage-mediated IL-1β secretion through activation of the NLRP3 inflammasome pathway. We also present a concept of TNF priming in this context, demonstrating that the particle-related IL-1β secretion can take place in a truly sterile environment. Thus, inhibition of inflammasome signaling appears a means to prevent wear particle-induced inflammation and development of peri‑prosthetic osteolysis., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2020. Published by Elsevier Ltd.)
- Published
- 2020
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45. Forskolin attenuates the NLRP3 inflammasome activation and IL-1β secretion in human macrophages.
- Author
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Chen Y, Wen JG, Feng JJ, Wang YH, Li TF, Nurmi K, Eklund KK, and Xing D
- Subjects
- Caspase 1 genetics, Cell Line, Colforsin administration & dosage, Dose-Response Relationship, Drug, Humans, Inflammasomes metabolism, Interleukin-1beta genetics, Interleukin-4 genetics, Macrophages metabolism, NLR Family, Pyrin Domain-Containing 3 Protein genetics, Nigericin pharmacology, RNA, Messenger genetics, Tumor Necrosis Factor-alpha genetics, Colforsin pharmacology, Inflammasomes drug effects, Interleukin-1beta metabolism, Macrophages drug effects, NLR Family, Pyrin Domain-Containing 3 Protein metabolism
- Abstract
Background: The treatment of nucleotide-binding domain and leucine-rich repeat containing family, pyrin domain containing 3 (NLRP3) inflammasome-mediated pediatric inflammatory diseases is challenging. Here we studied whether cyclic adenosine monophosphate (cAMP) elevator forskolin could attenuate the nigericin-induced NLRP3-inflammasome activation and interleukin-1β (IL-1β) secretion in human macrophages., Methods: The proteins and messenger RNA (mRNA) levels of inflammasome structural proteins and proinflammatory cytokines were measured in forskolin-stimulated nigericin-activated human THP-1 macrophages and primary macrophages., Results: Activation of THP-1 macrophages with nigericin increased the mRNA expression of NLRP3, IL-1β, and caspase-1 (P < 0.01). Forskolin stimulation had no effect on the mRNA expression of NLRP3, caspase-1, or IL-1β in nigericin-activated cells (P > 0.05), while their protein levels were significantly decreased (P < 0.05). Forskolin-mediated increase in cytoplasmic cAMP in non-activated cells was attenuated in nigericin-activated macrophages (P < 0.05). Basal IL-1β secretion increased from 584 to 2696 pg/mL (P < 0.01) in nigericin-activated macrophages; forskolin dose-dependently reduced the nigericin-induced secretion of mature IL-1β (P < 0.01). Forskolin also inhibited the IL-1β secretion from activated human primary macrophages., Conclusions: Forskolin inhibits the NLRP3 inflammasome activation and the secretion of mature IL-1β, in human macrophages. Forskolin and other cAMP elevator drugs could represent a novel approach for treatment of diseases associated with excessive inflammasome activation, like pediatric inflammatory diseases.
- Published
- 2019
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46. Gain-of-function CEBPE mutation causes noncanonical autoinflammatory inflammasomopathy.
- Author
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Göös H, Fogarty CL, Sahu B, Plagnol V, Rajamäki K, Nurmi K, Liu X, Einarsdottir E, Jouppila A, Pettersson T, Vihinen H, Krjutskov K, Saavalainen P, Järvinen A, Muurinen M, Greco D, Scala G, Curtis J, Nordström D, Flaumenhaft R, Vaarala O, Kovanen PE, Keskitalo S, Ranki A, Kere J, Lehto M, Notarangelo LD, Nejentsev S, Eklund KK, Varjosalo M, Taipale J, and Seppänen MRJ
- Subjects
- Aged, Caspases genetics, Caspases metabolism, Cells, Cultured, Female, Gene Expression Profiling, Humans, Inflammasomes metabolism, Macrophages pathology, Male, NLR Family, Pyrin Domain-Containing 3 Protein genetics, NLR Family, Pyrin Domain-Containing 3 Protein metabolism, Pedigree, Sequence Analysis, RNA, Up-Regulation, CCAAT-Enhancer-Binding Proteins genetics, Gain of Function Mutation genetics, Immunologic Deficiency Syndromes genetics, Inflammasomes genetics, Inflammation genetics, Macrophages metabolism, Neutrophils physiology
- Abstract
Background: CCAAT enhancer-binding protein epsilon (C/EBPε) is a transcription factor involved in late myeloid lineage differentiation and cellular function. The only previously known disorder linked to C/EBPε is autosomal recessive neutrophil-specific granule deficiency leading to severely impaired neutrophil function and early mortality., Objective: The aim of this study was to molecularly characterize the effects of C/EBPε transcription factor Arg219His mutation identified in a Finnish family with previously genetically uncharacterized autoinflammatory and immunodeficiency syndrome., Methods: Genetic analysis, proteomics, genome-wide transcriptional profiling by means of RNA-sequencing, chromatin immunoprecipitation (ChIP) sequencing, and assessment of the inflammasome function of primary macrophages were performed., Results: Studies revealed a novel mechanism of genome-wide gain-of-function that dysregulated transcription of 464 genes. Mechanisms involved dysregulated noncanonical inflammasome activation caused by decreased association with transcriptional repressors, leading to increased chromatin occupancy and considerable changes in transcriptional activity, including increased expression of NLR family, pyrin domain-containing 3 protein (NLRP3) and constitutively expressed caspase-5 in macrophages., Conclusion: We describe a novel autoinflammatory disease with defective neutrophil function caused by a homozygous Arg219His mutation in the transcription factor C/EBPε. Mutated C/EBPε acts as a regulator of both the inflammasome and interferome, and the Arg219His mutation causes the first human monogenic neomorphic and noncanonical inflammasomopathy/immunodeficiency. The mechanism, including widely dysregulated transcription, is likely not unique for C/EBPε. Similar multiomics approaches should also be used in studying other transcription factor-associated diseases., (Copyright © 2019 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2019
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47. Damaging heterozygous mutations in NFKB1 lead to diverse immunologic phenotypes.
- Author
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Kaustio M, Haapaniemi E, Göös H, Hautala T, Park G, Syrjänen J, Einarsdottir E, Sahu B, Kilpinen S, Rounioja S, Fogarty CL, Glumoff V, Kulmala P, Katayama S, Tamene F, Trotta L, Morgunova E, Krjutškov K, Nurmi K, Eklund K, Lagerstedt A, Helminen M, Martelius T, Mustjoki S, Taipale J, Saarela J, Kere J, Varjosalo M, and Seppänen M
- Subjects
- Adult, Aged, Cell Line, Child, Female, Heterozygote, Humans, Inflammation genetics, Leukocytes, Mononuclear metabolism, Male, Middle Aged, Mutation, Phenotype, Autoimmune Diseases genetics, Immunologic Deficiency Syndromes genetics, NF-kappa B genetics
- Abstract
Background: The nuclear factor κ light-chain enhancer of activated B cells (NF-κB) signaling pathway is a key regulator of immune responses. Accordingly, mutations in several NF-κB pathway genes cause immunodeficiency., Objective: We sought to identify the cause of disease in 3 unrelated Finnish kindreds with variable symptoms of immunodeficiency and autoinflammation., Methods: We applied genetic linkage analysis and next-generation sequencing and functional analyses of NFKB1 and its mutated alleles., Results: In all affected subjects we detected novel heterozygous variants in NFKB1, encoding for p50/p105. Symptoms in variant carriers differed depending on the mutation. Patients harboring a p.I553M variant presented with antibody deficiency, infection susceptibility, and multiorgan autoimmunity. Patients with a p.H67R substitution had antibody deficiency and experienced autoinflammatory episodes, including aphthae, gastrointestinal disease, febrile attacks, and small-vessel vasculitis characteristic of Behçet disease. Patients with a p.R157X stop-gain experienced hyperinflammatory responses to surgery and showed enhanced inflammasome activation. In functional analyses the p.R157X variant caused proteasome-dependent degradation of both the truncated and wild-type proteins, leading to a dramatic loss of p50/p105. The p.H67R variant reduced nuclear entry of p50 and showed decreased transcriptional activity in luciferase reporter assays. The p.I553M mutation in turn showed no change in p50 function but exhibited reduced p105 phosphorylation and stability. Affinity purification mass spectrometry also demonstrated that both missense variants led to altered protein-protein interactions., Conclusion: Our findings broaden the scope of phenotypes caused by mutations in NFKB1 and suggest that a subset of autoinflammatory diseases, such as Behçet disease, can be caused by rare monogenic variants in genes of the NF-κB pathway., (Copyright © 2017 American Academy of Allergy, Asthma & Immunology. Published by Elsevier Inc. All rights reserved.)
- Published
- 2017
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48. Hemin and Cobalt Protoporphyrin Inhibit NLRP3 Inflammasome Activation by Enhancing Autophagy: A Novel Mechanism of Inflammasome Regulation.
- Author
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Nurmi K, Kareinen I, Virkanen J, Rajamäki K, Kouri VP, Vaali K, Levonen AL, Fyhrquist N, Matikainen S, Kovanen PT, and Eklund KK
- Subjects
- Animals, Cell Line, Hemin administration & dosage, Humans, Immunomodulation, Interleukin-1beta metabolism, Mice, Mice, Inbred C57BL, Mice, Knockout, NLR Family, Pyrin Domain-Containing 3 Protein metabolism, Peritonitis chemically induced, Protoporphyrins administration & dosage, Uric Acid, Hemin metabolism, Inflammasomes metabolism, Macrophages physiology, Peritonitis immunology, Protoporphyrins metabolism
- Abstract
Inflammasomes are intracellular protein platforms, which, upon activation, produce the highly proinflammatory cytokines interleukin (IL)-1β and IL-18. Heme, hemin and their degradation products possess significant immunomodulatory functions. Here, we studied whether hemin regulates inflammasome function in macrophages. Both hemin and its derivative, cobalt protoporphyrin (CoPP), significantly reduced IL-1β secretion by cultured human primary macrophages, the human monocytic leukemia cell line and also mouse bone marrow-derived and peritoneal macrophages. Intraperitoneal administration of CoPP to mice prior to urate crystal-induced peritonitis alleviated IL-1β secretion to the peritoneal cavity. In cultured macrophages, hemin and CoPP inhibited NLRP3 inflammasome assembly by reducing the amount of intracellular apoptosis-associated speck-like protein containing a caspase-recruitment domain (ASC). The reduction of ASC was associated with enhanced autophagosome formation and autophagic flux. Inhibition of autophagy prevented the CoPP-induced depletion of ASC, implying that the depletion was caused by increased autophagy. Our data indicate that hemin functions as an endogenous negative regulator of the NLRP3 inflammasome. The inhibition is mediated via enhanced autophagy that results in increased degradation of ASC. This regulatory mechanism may provide a novel approach for the treatment of inflammasome-related diseases., (© 2016 S. Karger AG, Basel.)
- Published
- 2017
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49. Calpain Activity Is Essential for ATP-Driven Unconventional Vesicle-Mediated Protein Secretion and Inflammasome Activation in Human Macrophages.
- Author
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Välimäki E, Cypryk W, Virkanen J, Nurmi K, Turunen PM, Eklund KK, Åkerman KE, Nyman TA, and Matikainen S
- Subjects
- Humans, Inflammasomes immunology, Macrophages immunology, Adenosine Triphosphate metabolism, Calpain metabolism, Inflammasomes metabolism, Macrophages metabolism
- Abstract
Extracellular ATP is an endogenous danger signal that is known to activate inflammatory responses in innate immune cells, including macrophages. Activated macrophages start to secrete proteins to induce an immune response, as well as to recruit other immune cells to the site of infection and tissue damage. In this study, we characterized the secretome (i.e., the global pattern of secreted proteins) of ATP-stimulated human macrophages. We show that ATP stimulation activates robust vesicle-mediated unconventional protein secretion, including exosome release and membrane shedding, from human macrophages. Pathway analysis of the identified secreted proteins showed that calpain-related pathways were overrepresented in the secretome of ATP-stimulated cells. In accordance with this, calpains, which are calcium-dependent nonlysosomal cysteine proteases, were activated upon ATP stimulation through a P2X purinoceptor 7 receptor-dependent pathway. Functional studies demonstrated that calpain activity is essential for the P2X purinoceptor 7 receptor-mediated activation of unconventional protein secretion. Unconventional protein secretion was followed by cell necrosis and NLRP3 inflammasome-mediated secretion of the mature form of the proinflammatory cytokine IL-1β. Furthermore, ATP-driven NLRP3 inflammasome activation was also dependent on calpain activity. Interestingly, pro-IL-1β and inflammasome components ASC and caspase-1 were released by ATP-activated macrophages through a vesicle-mediated secretion pathway. In conclusion, to our knowledge, we provide the first global characterization of proteins secreted by ATP-activated human macrophages and show a pivotal role for calpains in the activation of the inflammatory response during ATP exposure., (Copyright © 2016 by The American Association of Immunologists, Inc.)
- Published
- 2016
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50. p38δ MAPK: A Novel Regulator of NLRP3 Inflammasome Activation With Increased Expression in Coronary Atherogenesis.
- Author
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Rajamäki K, Mäyränpää MI, Risco A, Tuimala J, Nurmi K, Cuenda A, Eklund KK, Öörni K, and Kovanen PT
- Subjects
- Adenosine Triphosphate metabolism, Cells, Cultured, Cholesterol metabolism, Coronary Artery Disease genetics, Coronary Artery Disease pathology, Coronary Vessels pathology, Crystallization, Enzyme Activation, Foam Cells pathology, Gene Expression Profiling methods, Histocompatibility Antigens Class II metabolism, Humans, Inflammasomes genetics, Male, Middle Aged, Mitogen-Activated Protein Kinase 13 genetics, NLR Family, Pyrin Domain-Containing 3 Protein genetics, Necrosis, Nuclear Proteins metabolism, Oligonucleotide Array Sequence Analysis, Primary Cell Culture, Real-Time Polymerase Chain Reaction, Signal Transduction, Time Factors, Trans-Activators metabolism, Up-Regulation, Coronary Artery Disease enzymology, Coronary Vessels enzymology, Foam Cells enzymology, Inflammasomes metabolism, Mitogen-Activated Protein Kinase 13 metabolism, NLR Family, Pyrin Domain-Containing 3 Protein metabolism, Plaque, Atherosclerotic
- Abstract
Objective: Activation of the inflammasome pathway in macrophages results in the secretion of 2 potent proinflammatory and proatherogenic cytokines, interleukin (IL)-1β, and IL-18. Atherosclerotic lesions are characterized by the presence of various endogenous activators of the NLR family pyrin domain containing 3 (NLRP3) inflammasome, including cholesterol crystals and extracellular ATP. The aim of this study was to comprehensively characterize the expression of inflammasome pathway components and regulators in human atherosclerotic lesions., Approach and Results: Twenty human coronary artery RNA samples from 10 explanted hearts were analyzed using an inflammasome pathway-focused quantitative polymerase chain reaction array. Advanced atherosclerotic plaques, when compared with early-to-intermediate lesions from the same coronary trees, displayed significant upregulation of 12 target genes, including the key inflammasome components apoptosis-associated speck-like protein containing a CARD domain, caspase-1, and IL-18. Immunohistochemical stainings of the advanced plaques revealed macrophage foam cells positive for NLRP3 inflammasome components around the necrotic lipid cores. The polymerase chain reaction array target p38δ mitogen-activated protein kinase was upregulated in advanced plaques and strongly expressed by lesional macrophage foam cells. In cultured human monocyte-derived macrophages, the p38δ mitogen-activated protein kinase was activated by intracellular stress signals triggered during ATP- and cholesterol crystal-induced NLRP3 inflammasome activation and was required for NLRP3-mediated IL-1β secretion., Conclusions: Increased expression of the key inflammasome components in advanced coronary lesions implies enhanced activity of the inflammasome pathway in progression of coronary atherosclerosis. The p38δ mitogen-activated protein kinase was identified as a novel regulator of NLRP3 inflammasome activation in primary human macrophages, and thus, represents a potential target for modulation of atherosclerotic inflammation., (© 2016 American Heart Association, Inc.)
- Published
- 2016
- Full Text
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