35 results on '"Norito Shibata"'
Search Results
2. Review for 'Cell quiescence in planarian stem cells, interplay between p53 and nutritional stimuli'
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Norito Shibata
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- 2022
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3. Planarian PIWI-piRNA Interaction Analysis Using Immunoprecipitation and piRNA Sequencing
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Makoto, Kashima, Atsumi, Miyata, and Norito, Shibata
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Pluripotent Stem Cells ,Adult Stem Cells ,Argonaute Proteins ,Animals ,Immunoprecipitation ,Planarians ,RNA, Small Interfering - Abstract
The freshwater planarian Dugesia japonica is a good in vivo model for studying the function of piwi genes in adult pluripotent stem cell (aPSC) due to their abundant aPSCs. Generally, PIWI family proteins encoded by piwi genes bind to small noncoding RNAs called piRNAs (PIWI-interacting piRNAs). The analysis of PIWI-piRNA complexes in the planarian is useful for revealing the functions of piwi genes in the aPSC system. In this chapter, we present an immunoprecipitation protocol for PIWI-piRNA complexes from whole planarians.
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- 2022
4. Planarian PIWI–piRNA Interaction Analysis Using Immunoprecipitation and piRNA Sequencing
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Makoto Kashima, Atsumi Miyata, and Norito Shibata
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- 2022
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5. Migratory regulation by MTA homologous genes is essential for the uniform distribution of planarian adult pluripotent stem cells
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Yuki Sato, Norito Shibata, Chikara Hashimoto, and Kiyokazu Agata
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Pluripotent Stem Cells ,Adult Stem Cells ,Animals ,Cell Differentiation ,Cell Biology ,Pemetrexed ,Planarians ,Developmental Biology - Abstract
The migration of adult stem cells in vivo is an important issue, but the complex tissue structures involved, and limited accessibility of the cells hinder a detailed investigation. To overcome these problems, the freshwater planarian Dugesia japonica was used because it has a simple body plan and abundant adult pluripotent stem cells (neoblasts) distributed uniformly throughout its body. To investigate the migratory mechanisms of neoblasts, two planarian homologous genes of metastatic tumor antigen (MTA-A and MTA-B), a protein involved in cancer metastasis that functions through histone deacetylation, were identified, and their function was analyzed using RNA interference (RNAi). MTA-A or MTA-B knockdown disrupted homeostatic tissue turnover and regeneration in planarians. Whereas neoblasts in MTA-A (RNAi) and MTA-B (RNAi) animals were maintained, neoblast differentiation was inhibited. Furthermore, the normal uniform neoblast distribution pattern changed to a branch-like pattern in MTA-A (RNAi) and MTA-B (RNAi) animals. To examine the neoblast migratory ability, a partial X-ray irradiation assay was performed in D. japonica. Using this assay system, the MTA-A knockdown neoblasts migrated collectively in a branch-like pattern, and the MTA-B knockdown neoblasts were not able to migrate. These results indicated that MTA-A was required for the exit of neoblasts from the branch-like region, and that MTA-B was required for neoblast migration. Thus, the migration mediated by MTA-A and MTA-B enabled uniform neoblast distribution and was required for neoblast differentiation to achieve tissue homeostasis and regeneration.
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- 2021
6. What is the role of PIWI family proteins in adult pluripotent stem cells? Insights from asexually reproducing animals, planarians
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Norito Shibata, Kiyokazu Agata, and Makoto Kashima
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Pluripotent Stem Cells ,0303 health sciences ,biology ,Regeneration (biology) ,Cellular differentiation ,Piwi-interacting RNA ,Cell Biology ,Planarians ,biology.organism_classification ,Planaria ,Cell biology ,03 medical and health sciences ,0302 clinical medicine ,Planarian ,Argonaute Proteins ,Reproduction, Asexual ,Animals ,Stem cell ,Induced pluripotent stem cell ,030217 neurology & neurosurgery ,Tissue homeostasis ,030304 developmental biology ,Developmental Biology - Abstract
Planarians have a remarkable regenerative ability owing to their adult pluripotent stem cells (aPSCs), which are called "neoblasts." Planarians maintain a considerable number of neoblasts throughout their adulthood to supply differentiated cells for the maintenance of tissue homeostasis and asexual reproduction (fission followed by regeneration). Thus, planarians serve as a good model to study the regulatory mechanisms of in vivo aPSCs. In asexually reproducing invertebrates, such as sponge, Hydra, and planaria, piwi family genes are the markers most commonly expressed in aPSCs. While piwi family genes are known as guardians against transposable elements in the germline cells of animals that only sexually propagate, their functions in the aPSC system have remained elusive. In this review, we introduce recent knowledge on the PIWI family proteins in the aPSC system in planarians and other organisms and discuss how PIWI family proteins contribute to the regulation of the aPSC system.
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- 2020
7. Loss of plac8 expression rapidly leads pluripotent stem cells to enter active state during planarian regeneration.
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Hayoung Lee, Kanon Hikasa, Yoshihiko Umesono, Tetsutaro Hayashi, Kiyokazu Agata, and Norito Shibata
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STEM cells ,PLURIPOTENT stem cells ,CELL populations ,MOLECULAR switches ,REGENERATION (Biology) - Abstract
The regenerative ability of planarians relies on their adult pluripotent stem cell population. Although all stem cells express a piwi homolog, recently it has become possible to classify the piwi+ stem cell population into specialized subpopulations according to the expression of genes related to differentiation. However, piwi+ stem cells behave practically as a homogeneous population after amputation, during which stem cells show accelerated proliferation, named 'induced hyperproliferation'. Here, we show that plac8-A was expressed in almost all of the stem cells, and that a decrease of the plac8-A expression level led to induced hyperproliferation uniformly in a broad stem cell subpopulation after amputation. This reduction of plac8-A expression was caused by activated JNK signaling after amputation. Pharmacological inhibition of JNK signaling caused failure to induce hyperproliferation and resulted in regenerative defects. Such defects were abrogated by simultaneous knockdown of plac8-A expression. Thus, JNK-dependent suppression of plac8-A expression is indispensable for stem cell dynamics involved in regeneration. These findings suggest that plac8-A acts as a molecular switch of piwi+ stem cells for entry into the regenerative state after amputation. [ABSTRACT FROM AUTHOR]
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- 2022
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8. Inheritance of a Nuclear PIWI from Pluripotent Stem Cells by Somatic Descendants Ensures Differentiation by Silencing Transposons in Planarian
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Kuniaki Saito, Labib Rouhana, Taisuke Ishiko, Kiyokazu Agata, Shigenobu Yonemura, Kazuyo Misaki, Osamu Nishimura, Makoto Kashima, Haruhiko Siomi, Mikiko C. Siomi, and Norito Shibata
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Pluripotent Stem Cells ,0301 basic medicine ,endocrine system ,Somatic cell ,Cellular differentiation ,Inheritance Patterns ,Piwi-interacting RNA ,Models, Biological ,General Biochemistry, Genetics and Molecular Biology ,Germline ,03 medical and health sciences ,Animals ,Gene silencing ,Gene Silencing ,RNA, Small Interfering ,Induced pluripotent stem cell ,Molecular Biology ,Cell Nucleus ,Genetics ,Base Sequence ,biology ,urogenital system ,Cell Differentiation ,Planarians ,Cell Biology ,Argonaute ,biology.organism_classification ,Immunohistochemistry ,030104 developmental biology ,Planarian ,Argonaute Proteins ,DNA Transposable Elements ,Developmental Biology - Abstract
Differentiation of pluripotent stem cells (PSCs) requires transposon silencing throughout the process. PIWIs, best known as key factors in germline transposon silencing, are also known to act in somatic differentiation of planarian PSCs (neoblasts). However, how PIWIs control the latter process remains elusive. Here, using Dugesia japonica, we show that a nuclear PIWI, DjPiwiB, was bound to PIWI-interacting RNAs (generally key mediators of PIWI-dependent transposon silencing), and was detected in not only neoblasts but also their descendant somatic cells, which do not express piwi. In contrast, cytoplasmic DjPiwiA and DjPiwiC were detected only in neoblasts, in accord with their transcription there. DjPiwiB was indispensable for regeneration, but dispensable for transposon silencing in neoblasts. However, transposons were derepressed at the onset of differentiation in DjPiwiB-knockdown planarians. Thus, DjPiwiB appears to be inherited by descendant somatic cells of neoblasts to ensure transposon silencing in those cells, which are unable to produce PIWI proteins.
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- 2016
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9. RNA Interference in Planarians: Feeding and Injection of Synthetic dsRNA
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Norito, Shibata and Kiyokazu, Agata
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Phenotype ,Animals ,Regeneration ,RNA Interference ,Planarians ,Injections ,RNA, Double-Stranded - Abstract
RNA interference (RNAi) is one of the simplest and easiest methods for specifically perturbing gene function in an organism. In planarian research, RNAi is one of the essential methods for defining gene functions not only during regeneration, but also during other life history stages. Since the first report of the efficacy of RNAi in planarians in 1999, several RNAi protocols have been reported. Here, we describe protocols to synthesize and deliver synthetic double-stranded RNA (dsRNA) to planarians, either by injection or by feeding. Both are easy, effective, and economical means of investigating gene functions in planarians.
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- 2018
10. Searching for non-transposable targets of planarian nuclear PIWI in pluripotent stem cells and differentiated cells
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Norito Shibata, Makoto Kashima, and Kiyokazu Agata
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0301 basic medicine ,Transposable element ,Pluripotent Stem Cells ,endocrine system ,Cellular differentiation ,Piwi-interacting RNA ,Biology ,Transcriptome ,03 medical and health sciences ,RNA interference ,Animals ,RNA, Messenger ,Induced pluripotent stem cell ,Gene ,RNA, Double-Stranded ,urogenital system ,Computational Biology ,Gene Expression Regulation, Developmental ,Cell Differentiation ,Cell Biology ,Planarians ,biology.organism_classification ,Cell biology ,030104 developmental biology ,Planarian ,Argonaute Proteins ,RNA Interference ,Developmental Biology - Abstract
Nuclear PIWIs together with their guide RNAs (piRNAs) epigenetically silence various genes including transposons in many organisms. In planarians, the nuclear piwi family gene, DjpiwiB is specifically transcribed in adult pluripotent stem cells (adult PSC, neoblast), but not in differentiated cells. However, the protein accumulates in the nuclei of both neoblasts and their descendant differentiated cells. Interestingly, PIWI(DjPiwiB)-piRNA complexes are indispensable for the repression of transposable genes at the onset of differentiation from neoblasts. Here, we conducted a comparative transcriptome analysis between control and DjpiwiB(RNAi) animals to identify non-transposable target genes of the DjPiwiB-piRNA complexes. Using bioinformatic analyses and RNAi we demonstrate that DjPiwiB-piRNA complexes are required for the proper expression of Djmcm2 and Djhistone h4 in neoblasts and that DjPiwiB-piRNA complexes regulate the transient expression of Djcalu during neoblast differentiation. Thus, DjPiwiB-piRNA complexes regulate the correct expression patterns during neoblast self-renewal and differentiation.
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- 2018
11. RNA Interference in Planarians: Feeding and Injection of Synthetic dsRNA
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Kiyokazu Agata and Norito Shibata
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0301 basic medicine ,biology ,Regeneration (biology) ,fungi ,RNA ,biology.organism_classification ,Cell biology ,03 medical and health sciences ,RNA silencing ,030104 developmental biology ,0302 clinical medicine ,RNA interference ,Planarian ,Gene ,030217 neurology & neurosurgery ,Organism ,Function (biology) - Abstract
RNA interference (RNAi) is one of the simplest and easiest methods for specifically perturbing gene function in an organism. In planarian research, RNAi is one of the essential methods for defining gene functions not only during regeneration, but also during other life history stages. Since the first report of the efficacy of RNAi in planarians in 1999, several RNAi protocols have been reported. Here, we describe protocols to synthesize and deliver synthetic double-stranded RNA (dsRNA) to planarians, either by injection or by feeding. Both are easy, effective, and economical means of investigating gene functions in planarians.
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- 2018
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12. RNA interference by feeding in vitro–synthesized double‐stranded RNA to planarians: Methodology and dynamics
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Norito Shibata, Jennifer A. Weiss, David J. Forsthoefel, Hayoung Lee, Takeshi Inoue, Phillip A. Newmark, Kiyokazu Agata, Labib Rouhana, and Ryan S. King
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Regulation of gene expression ,Genetics ,Gene knockdown ,Bacteria ,biology ,Genetic Vectors ,fungi ,Gene Expression Regulation, Developmental ,Reproducibility of Results ,RNA ,Planarians ,biology.organism_classification ,Article ,Cell biology ,RNA silencing ,Phenotype ,Subcloning ,Genetic Techniques ,Schmidtea mediterranea ,RNA interference ,Animals ,RNA Interference ,Gene ,RNA, Double-Stranded ,Developmental Biology - Abstract
Background The ability to assess gene function is essential for understanding biological processes. Currently, RNA interference (RNAi) is the only technique available to assess gene function in planarians, in which it has been induced by means of injection of double-stranded RNA (dsRNA), soaking, or ingestion of bacteria expressing dsRNA. Results We describe a simple and robust RNAi protocol, involving in vitro synthesis of dsRNA that is fed to the planarians. Advantages of this protocol include the ability to produce dsRNA from any vector without subcloning, resolution of ambiguities in quantity and quality of input dsRNA, as well as time and ease of application. We have evaluated the logistics of inducing RNAi in planarians using this methodology in careful detail, from the ingestion and processing of dsRNA in the intestine, to timing and efficacy of knockdown in neoblasts, germline, and soma. We also present systematic comparisons of effects of amount, frequency, and mode of dsRNA delivery. Conclusions This method gives robust and reproducible results and is amenable to high-throughput studies. Overall, this RNAi methodology provides a significant advance by combining the strengths of current protocols available for dsRNA delivery in planarians and has the potential to benefit RNAi methods in other systems. Developmental Dynamics 242:718–730, 2013. © 2013 Wiley Periodicals, Inc.
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- 2013
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13. Molecular markers for X-ray-insensitive differentiated cells in the Inner and outer regions of the mesenchymal space in planarian Dugesia japonica
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Tomomi Kudome-Takamatsu, Norito Shibata, Osamu Nishimura, Kiyokazu Agata, Yang An, Machiko Teramoto, and Makoto Kashima
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0301 basic medicine ,Cellular differentiation ,Cell ,Biology ,Radiation Tolerance ,Extracellular matrix ,Animals, Genetically Modified ,Mesoderm ,03 medical and health sciences ,medicine ,Animals ,RNA, Small Interfering ,Gene ,X-Rays ,Mesenchymal stem cell ,Gene Expression Regulation, Developmental ,Cell Differentiation ,Cell Biology ,Helminth Proteins ,Planarians ,biology.organism_classification ,Molecular biology ,030104 developmental biology ,medicine.anatomical_structure ,Planarian ,Dugesia japonica ,Stem cell ,Biomarkers ,Developmental Biology - Abstract
Planarian's strong regenerative ability is dependent on stem cells (called neoblasts) that are X-ray-sensitive and proliferative stem cells. In addition to neoblasts, another type of X-ray-sensitive cells was newly identified by recent research. Thus, planarian's X-ray-sensitive cells can be divided into at least two populations, Type 1 and Type 2, the latter corresponding to planarian's classically defined “neoblasts”. Here, we show that Type 1 cells were distributed in the outer region (OR) immediately underneath the muscle layer at all axial levels from head to tail, while the Type 2 cells were distributed in a more internal region (IR) of the mesenchymal space at the axial levels from neck to tail. To elucidate the biological significance of these two regions, we searched for genes expressed in differentiated cells that were locate close to these X-ray-sensitive cell populations in the mesenchymal space, and identified six genes mainly expressed in the OR or IR, named OR1, OR2, OR3, IR1, IR2 and IR3. The predicted amino acid sequences of these genes suggested that differentiated cells expressing OR1, OR3, IR1, or IR2 provide Type 1 and Type 2 cells with specific extracellular matrix (ECM) environments.
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- 2016
14. Comprehensive gene expression analyses in pluripotent stem cells of a planarian, Dugesia japonica
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Tetsutaro Hayashi, Nobuko Suzuki, Fuyan Son, Syozo Sano, Ryoko Araki, Norito Shibata, Ryutaro Fukumura, Junsuke Fujii, Osamu Nishimura, Masumi Abe, Kiyokazu Agata, and Tomomi Kudome-Takamatsu
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Pluripotent Stem Cells ,Embryology ,Population ,Real-Time Polymerase Chain Reaction ,Transcriptome ,Animals ,Regeneration ,RNA, Messenger ,Induced pluripotent stem cell ,education ,Gene ,In Situ Hybridization ,Oligonucleotide Array Sequence Analysis ,Genetics ,Regulation of gene expression ,education.field_of_study ,biology ,Gene Expression Profiling ,Gene Expression Regulation, Developmental ,Helminth Proteins ,Planarians ,biology.organism_classification ,Cell biology ,Gene expression profiling ,Planarian ,Biomarkers ,Developmental Biology ,Adult stem cell - Abstract
The neoblasts are the only somatic stem cells in planarians possessing pluripotency, and can give rise to all types of cells, including germline cells. Recently, accumulated knowledge about the transcriptome and expression dynamics of various pluripotent somatic stem cells has provided important opportunities to understand not only fundamental mechanisms of pluripotency, but also stemness across species at the molecular level. The neoblasts can easily be eliminated by radiation. Also, by using fluorescence activated cell sorting (FACS), we can purify and collect many neoblasts, enabling identification of neoblast-related genes by comparison of the gene expression level among intact and X-ray-irradiated animals, and purified neoblasts. In order to find such genes, here we employed the high coverage expression profiling (HiCEP) method, which enables us to observe and compare genome-wide gene expression levels between different samples without advance sequence information, in the planarian D. japonica as a model organism of pluripotent stem cell research. We compared expression levels of ~17,000 peaks corresponding to independent genes among different samples, and obtained 102 peaks as candidates. Expression analysis of genes identified from those peaks by in situ hybridization revealed that at least 42 genes were expressed in the neoblasts and in neoblast-related cells that had a different distribution pattern in the body than neoblasts. Also, single-cell PCR analysis of those genes revealed heterogeneous expression of some genes in the neoblast population. Thus, using multidimensional gene expression analyses, we were able to obtain a valuable data set of neoblast-related genes and their expression patterns.
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- 2012
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15. ERK signaling controls blastema cell differentiation during planarian regeneration
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Yoshimichi Tabata, Nobuko Suzuki, Fuyan Son, Yoshihiko Umesono, Junichi Tasaki, Ryoko Araki, Norito Shibata, Osamu Nishimura, Masumi Abe, Kazu Itomi, and Kiyokazu Agata
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MAPK/ERK pathway ,education.field_of_study ,biology ,MAP Kinase Signaling System ,Stem Cells ,Regeneration (biology) ,Cellular differentiation ,fungi ,Population ,Cell Differentiation ,Planarians ,biology.organism_classification ,Cell biology ,body regions ,Planarian ,Animals ,Regeneration ,Dugesia japonica ,Extracellular Signal-Regulated MAP Kinases ,education ,Molecular Biology ,Blastema ,Developmental Biology ,Adult stem cell - Abstract
The robust regenerative ability of planarians depends on a population of somatic stem cells called neoblasts, which are the only mitotic cells in adults and are responsible for blastema formation after amputation. The molecular mechanism underlying neoblast differentiation associated with blastema formation remains unknown. Here, using the planarian Dugesia japonica we found that DjmkpA, a planarian mitogen-activated protein kinase (MAPK) phosphatase-related gene, was specifically expressed in blastema cells in response to increased extracellular signal-related kinase (ERK) activity. Pharmacological and genetic [RNA interference (RNAi)] approaches provided evidence that ERK activity was required for blastema cells to exit the proliferative state and undergo differentiation. By contrast, DjmkpA RNAi induced an increased level of ERK activity and rescued the differentiation defect of blastema cells caused by pharmacological reduction of ERK activity. These observations suggest that ERK signaling plays an instructive role in the cell fate decisions of blastema cells regarding whether to differentiate or not, by inducing DjmkpA as a negative regulator of ERK signaling during planarian regeneration.
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- 2011
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16. Role of c-Jun N-terminal kinase activation in blastema formation during planarian regeneration
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Toshihide Sakurai, Yoshihiko Umesono, Kiyokazu Agata, Junichi Tasaki, and Norito Shibata
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education.field_of_study ,animal structures ,Regeneration (biology) ,Population ,c-jun ,Cell Biology ,Biology ,biology.organism_classification ,Cell biology ,body regions ,Planarian ,Dugesia japonica ,education ,Blastema ,Mitosis ,Developmental biology ,Developmental Biology - Abstract
The robust regenerative abilities of planarians absolutely depend on a unique population of pluripotent stem cells called neoblasts, which are the only mitotic somatic cells in adult planarians and are responsible for blastema formation after amputation. Little is known about the molecular mechanisms that drive blastema formation during planarian regeneration. Here we found that treatment with the c-Jun N-terminal kinase (JNK) inhibitor SP600125 blocked the entry of neoblasts into the M-phase of the cell cycle, while allowing neoblasts to successfully enter S-phase in the planarian Dugesia japonica. The rapid and efficient blockage of neoblast mitosis by treatment with the JNK inhibitor provided a method to assess whether temporally regulated cell cycle activation drives blastema formation during planarian regeneration. In the early phase of blastema formation, activated JNK was detected prominently in a mitotic region (the "postblastema") proximal to the blastema region. Furthermore, we demonstrated that undifferentiated mitotic neoblasts in the postblastema showed highly activated JNK at the single cell level. JNK inhibition by treatment with SP600125 during this period caused a severe defect of blastema formation, which accorded with a drastic decrease of mitotic neoblasts in regenerating animals. By contrast, these animals still retained many undifferentiated neoblasts near the amputation stump. These findings suggest that JNK signaling plays a crucial role in feeding into the blastema neoblasts for differentiation by regulating the G2/M transition in the cell cycle during planarian regeneration.
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- 2011
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17. Different requirements for conserved post-transcriptional regulators in planarian regeneration and stem cell maintenance
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Labib Rouhana, Kiyokazu Agata, Norito Shibata, and Osamu Nishimura
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Ribonucleoprotein granule ,Biology ,RNP ,03 medical and health sciences ,0302 clinical medicine ,Schmidtea mediterranea ,Regeneration ,Vasa ,Animals ,Molecular Biology ,Chromatoid body ,030304 developmental biology ,Regulation of gene expression ,Planarian ,0303 health sciences ,Stem cell ,Post-transcriptional regulation ,Regeneration (biology) ,Gene Expression Regulation, Developmental ,Planarians ,Cell Biology ,P-bodies ,biology.organism_classification ,Cell biology ,Argonaute ,Ribonucleoproteins ,Dugesia japonica ,RNA Interference ,Germ granules ,030217 neurology & neurosurgery ,Developmental Biology - Abstract
Planarian regeneration depends on the presence and precise regulation of pluripotent adult somatic stem cells named neoblasts, which differentiate to replace cells of any missing tissue. A characteristic feature of neoblasts is the presence of large perinuclear nonmembranous organelles named “chromatoid bodies”, which are comparable to ribonucleoprotein structures found in germ cells of organisms across different phyla. In order to better understand regulation of gene expression in neoblasts, and potentially the function and composition of chromatoid bodies, we characterized homologues to known germ and soma ribonucleoprotein granule components from other organisms and analyzed their function during regeneration of the planarian Dugesia japonica. Expression in neoblasts was detected for 49 of 55 analyzed genes, highlighting the prevalence of post-transcriptional regulation in planarian stem cells. RNAi-mediated knockdown of two factors [ago-2 and bruli] lead to loss of neoblasts, and consequently loss of regeneration, corroborating with results previously reported for a bruli ortholog in the planarian Schmidtea mediterranea (Guo et al., 2006). Conversely, depletion mRNA turnover factors [edc-4 or upf-1], exoribonucleases [xrn-1 or xrn-2], or DEAD box RNA helicases [Djcbc-1 or vas-1] inhibited planarian regeneration, but did not reduce neoblast proliferation or abundance. We also found that depletion of cap-dependent translation initiation factors eIF-3A or eIF-2A interrupted cell cycle progression outside the M-phase of mitosis. Our results show that a set of post-transcriptional regulators is required to maintain the stem cell identity in neoblasts, while another facilitates proper differentiation. We propose that planarian neoblasts maintain pluripotency by employing mechanisms of post-transcriptional regulation exhibited in germ cells and early development of most metazoans.
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- 2010
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18. Single-cell gene profiling of planarian stem cells using fluorescent activated cell sorting and its 'index sorting' function for stem cell research
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Hiroshi Tarui, Tetsutaro Hayashi, Tomomi Kudome, Ryo Okumura, Norito Shibata, Kiyokazu Agata, and Osamu Nishimura
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Cell division ,Cell ,Helminth genetics ,Cell Biology ,Biology ,Cell cycle ,Cell sorting ,Molecular biology ,Cell cycle phase ,Cell biology ,medicine.anatomical_structure ,medicine ,Stem cell ,Developmental Biology ,Adult stem cell - Abstract
To achieve an integrated understanding of the stem cell system of planarians at both the cellular and molecular levels, we developed a new method by combining "fluorescent activated cell sorting (FACS) index sorting" analysis and single-cell reverse transcription-polymerase chain reaction (RT-PCR) to detect the gene expression and cell cycle state of stem cells simultaneously. Single cells were collected using FACS, and cDNAs of each cell were used for semi-quantitative RT-PCR. The results were plotted on the FACS sorting profile using the "index sorting" function, which enabled us to analyze the gene expression in combination with cell biological data (such as cell cycle phase) for each cell. Here we investigated the adult stem cells of planarians using this method and obtained findings suggesting that the stem cells might undergo commitment during S to G2/M phase. This method could be a powerful and straightforward tool for examining the stem cell biology of not only planarians but also other organisms, including vertebrates.
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- 2010
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19. Expression and functional analysis of musashi-like genes in planarian CNS regeneration
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Kiyokazu Agata, Osamu Nishimura, Sayaka Higuchi, Tetsutaro Hayashi, Kaneyasu Nishimura, Hiroshi Sakamoto, Hiroshi Tarui, and Norito Shibata
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Genetics ,Central Nervous System ,Embryology ,biology ,Cellular differentiation ,Molecular Sequence Data ,RNA-Binding Proteins ,Helminth Proteins ,Planarians ,biology.organism_classification ,Stem cell marker ,Neural stem cell ,Planarian ,Dugesia japonica ,Animals ,Drosophila Proteins ,Regeneration ,Amino Acid Sequence ,Stem cell ,Induced pluripotent stem cell ,Gene ,Developmental Biology - Abstract
The remarkable regenerative ability of planarians is made possible by a system of pluripotent stem cells. Recent molecular biological and ultrastructural studies have revealed that planarian stem cells consist of heterogeneous populations, which can be classified into several subsets according to their differential expression of RNA binding protein genes. In this study, we focused on planarian musashi family genes. Musashi encodes an evolutionarily conserved RNA binding protein known to be expressed in neural lineage cells, including neural stem cells, in many animals. Here, we investigated whether planarian musashi-like genes can be used as markers for detecting neural fate-restricted cells. Three musashi family genes, DjmlgA, DjmlgB and DjmlgC (Dugesia japonica musashi-like gene A, B, C), and Djdmlg (Dugesia japonica DAZAP-like/musashi-like gene) were obtained by searching a planarian EST database and 5' RACE, and each was found to have two RNA recognition motifs. We analyzed the types of cells expressing DjmlgA, DjmlgB, DjmlgC and Djdmlg by in situ hybridization, RT-PCR and single-cell RT-PCR analysis. Although Djdmlg was expressed in X-ray-sensitive stem cells and various types of differentiated cells, expression of the other three musashi-like genes was restricted to neural cells, as we expected. Further detailed analyses yielded the unexpected finding that these three planarian musashi family genes were predominantly expressed in X-ray-resistant differentiated neurons, but not in X-ray-sensitive stem cells. RNAi experiments suggested that these planarian musashi family genes might be involved in neural cell differentiation after neural cell-fate commitment.
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- 2008
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20. DjCBC-1, a conserved DEAD box RNA helicase of the RCK/p54/Me31B family, is a component of RNA-protein complexes in planarian stem cells and neurons
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Kiyokazu Agata, Maki Yoshida-Kashikawa, Norito Shibata, and Katsuaki Takechi
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Male ,DNA, Complementary ,DEAD box ,Macromolecular Substances ,Somatic cell ,Immunoelectron microscopy ,Molecular Sequence Data ,DEAD-box RNA Helicases ,Animals ,Amino Acid Sequence ,Cloning, Molecular ,Conserved Sequence ,Neurons ,Base Sequence ,Sequence Homology, Amino Acid ,biology ,Stem Cells ,Gene Expression Regulation, Developmental ,Planarians ,biology.organism_classification ,RNA Helicase A ,Molecular biology ,Germ Cells ,Planarian ,Dugesia japonica ,Female ,Chromatoid body ,Stem cell ,Developmental Biology - Abstract
The stem cells of planarians, known as neoblasts, can give rise to all cell types in planarians. Neoblasts can be identified by electron microscopy as cells with electron-dense chromatoid bodies, which are large RNP (ribonucleoprotein) complexes, in their cytoplasm. However, the components and function of chromatoid bodies are still relatively unknown. Here we identified a DEAD box RNA helicase gene of the RCK/p54/Me31B family from a planarian EST database and showed the localization of its product in chromatoid bodies by immunoelectron microscopy. We named this gene Djcbc-1 (Dugesia japonica chromatoid body component 1). Djcbc-1 was also strongly expressed in the brain and in the germline stem cells of sexualized planarians. We observed chromatoid body-like electron-dense bodies in brain neurons, where DjCBC-1 was also expressed. These observations suggest that common molecular components of RNP complexes may be involved in the regulation of somatic and germline stem cells, and neurons in planarians.
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- 2007
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21. Characterization and categorization of fluorescence activated cell sorted planarian stem cells by ultrastructural analysis
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Sayaka Higuchi, Kiyokazu Agata, Tetsutaro Hayashi, Hiroshi Sakamoto, Norito Shibata, and Isao Hori
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biology ,Cell ,Cell Biology ,Embryoid body ,biology.organism_classification ,Cell biology ,medicine.anatomical_structure ,Planarian ,Neurosphere ,medicine ,Chromatoid body ,Progenitor cell ,Stem cell ,Induced pluripotent stem cell ,Developmental Biology - Abstract
Planarians have regenerative ability made possible by pluripotent stem cells referred to as neoblasts. Classical ultrastructural studies have indicated that stem cells can be distinguished by a unique cytoplasmic structure known as the chromatoid body and their undifferentiated features, and they are specifically eliminated by X-ray irradiation. Recently, by using fluorescence activated cell sorting (FACS), planarian cells were separated into two X-ray-sensitive fractions (X1 and X2) and an X-ray-insensitive fraction (XIS) according to DNA content and cytoplasmic size. Here we analyzed the fractionated cells by transmission electron microscopy (TEM). First, we found that both undifferentiated cells (stem cells) and regenerative cells (differentiating cells) were concentrated in the X1 fraction containing the S/G2/M phase cells. The regenerative cells were considered to be committed stem cells or progenitor cells, suggesting that some stem cells may maintain proliferative ability even after cell fate-commitment. Second, we succeeded in identifying a new type of stem cells, which were small in size with few chromatoid bodies and a heterochromatin-rich nucleus. Interestingly, they were concentrated in the X2 fraction, containing G0/G1 phase cells. These results suggest that planarian stem cells are not homogeneous, but may consist of heterogeneous populations, like mammalian stem cells.
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- 2007
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22. Heterogeneity of chromatoid bodies in adult pluripotent stem cells of planarian Dugesia japonica
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Makoto Kashima, Nobuyoshi Kumagai, Norito Shibata, and Kiyokazu Agata
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inorganic chemicals ,0301 basic medicine ,Pluripotent Stem Cells ,congenital, hereditary, and neonatal diseases and abnormalities ,Piwi-interacting RNA ,Germline ,03 medical and health sciences ,0302 clinical medicine ,RNA interference ,Animals ,Regeneration ,Induced pluripotent stem cell ,Ribonucleoprotein ,Genetics ,biology ,organic chemicals ,nutritional and metabolic diseases ,Cell Biology ,Helminth Proteins ,Planarians ,biology.organism_classification ,Cell biology ,Adult Stem Cells ,030104 developmental biology ,Planarian ,Dugesia japonica ,Chromatoid body ,030217 neurology & neurosurgery ,Developmental Biology - Abstract
The robust regenerative ability of planarians is known to be dependent on adult pluripotent stem cells called neoblasts. One of the morphological features of neoblasts is cytoplasmic ribonucleoprotein granules (chromatoid bodies: CBs), which resemble germ granules present in germline cells in other animals. Previously, we showed by immuno-electron microscopic analysis that DjCBC-1, a planarian Me31B/Dhh1/DDX6 homologue, which is a component of ribonucleoprotein granules, was localized in CBs in the planarian Dugesia japonica. Also, recently it was reported using another planarian species that Y12 antibody recognizing symmetrical dimethylarginine (sDMA) specifically binds to CBs in which histone mRNA is co-localized. Here, we showed by double immunostaining and RNA interference (RNAi) that DjCBC-1-containing CBs and Y12-immunoreactive CBs are distinct structures, suggesting that CBs are composed of heterogeneous populations. We also found that the Y12-immunoreactive CBs specifically contained a cytoplasmic type of planarian PIWI protein (DjPiwiC). We revealed by RNAi experiments that Y12-immunoreactive CBs may have anti-transposable element activity involving the DjPiwiC protein in the neoblasts.
- Published
- 2015
23. Mouse RanBPM is a partner gene to a germline specific RNA helicase, mouse vasa homolog protein
- Author
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Ako Tokumasu, Ryuko Akasu, Naoki Tsunekawa, Shino Okamoto-Ito, Toshiaki Noce, and Norito Shibata
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Male ,Molecular Sequence Data ,Biology ,Microtubules ,Germline ,DEAD-box RNA Helicases ,Mice ,Two-Hybrid System Techniques ,Testis ,Translational regulation ,Genetics ,medicine ,Animals ,Humans ,Tissue Distribution ,Amino Acid Sequence ,Nuclear protein ,Spermatogenesis ,In Situ Hybridization ,Adaptor Proteins, Signal Transducing ,Microtubule nucleation ,Mice, Knockout ,Nuclear Proteins ,Cell Biology ,RNA Helicase A ,Molecular biology ,Cytoskeletal Proteins ,Meiosis ,Germ Cells ,ran GTP-Binding Protein ,medicine.anatomical_structure ,Knockout mouse ,Chromatoid body ,RNA Helicases ,Germ cell ,Developmental Biology - Abstract
Germ cell-specific ATP-dependent RNA helicase, the product of the mouse vasa homolog (Mvh), has been shown to play an essential role in the development of the male germ cell. In male Mvh knockout mice, premeiotic germ cells arrest at the zygotene stage. To investigate the role of MVH protein in the progression of meiosis, we searched for genes encoding partners that interact with MVH in testicular germ cells. Using the yeast two-hybrid system, we found that MVH interacts with mouse RanBPM, a Ran-GTP binding protein involved in microtubule nucleation. RanBPM is predominantly expressed in the testis, especially in maturating spermatocytes. Within the cell, RanBPM and MVH are closely associated with perinuclear RNA-protein complexes and chromatoid bodies. The interaction of MVH with RanBPM points to a functional relationship between translational regulation and the microtubule nucleation during meiosis. Mol. Reprod. Dev. 66: 1-7, 2004.
- Published
- 2003
- Full Text
- View/download PDF
24. Expression ofvasa(vas)-Related Genes in Germline Cells and Totipotent Somatic Stem Cells of Planarians
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Kiyokazu Agata, Yoshihiko Umesono, Norito Shibata, Kenji Watanabe, Takashige Sakurai, and Hidefumi Orii
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Somatic cell ,Cellular differentiation ,totipotent stem cell ,Molecular Sequence Data ,Helminth genetics ,vasa ,Biology ,Germline ,DEAD-box RNA Helicases ,Animals ,Drosophila Proteins ,Regeneration ,Amino Acid Sequence ,blastema ,Molecular Biology ,Genes, Helminth ,In Situ Hybridization ,neoblast ,Genetics ,Stem Cells ,X-Rays ,Totipotent ,Gene Expression Regulation, Developmental ,Proteins ,RNA Nucleotidyltransferases ,Helminth Proteins ,Planarians ,Sequence Analysis, DNA ,Cell Biology ,biology.organism_classification ,chromatoid body ,Cell biology ,PL10 ,Germ Cells ,planarian ,Planarian ,Chromatoid body ,Drosophila ,Sequence Alignment ,RNA Helicases ,Adult stem cell ,Developmental Biology - Abstract
Planarians are known for their strong regenerative ability. This ability has been considered to reside in the totipotent somatic stem cell called the "neoblast." Neoblasts contain a unique cytoplasmic structure called the "chromatoid body," which has similar characteristics to the germline granules of germline cells of other animals. The chromatoid bodies decrease in number and size during cytodifferentiation and disappear in completely differentiated cells during regeneration. However, germ cells maintain the chromatoid body during their differentiation from neoblasts. These observations suggest that the chromatoid body is concerned with the totipotency of cells. To understand the molecular nature of the chromatoid body in the neoblast, we focused on vasa (vas)-related genes, since VAS and VAS-related proteins are known to be components of the germline granules in Drosophila and Caenorhabditis elegans. By PCR, two vas-related genes (Dugesia japonica vasa-like gene, DjvlgA and DjvlgB) were isolated, and they were shown to be expressed in germ cells. Interestingly, DjvlgA was also expressed in a number of somatic cells in the mesenchymal space. In regenerating planarians, accumulation of DjvlgA-expressing cells was observed in both the blastema and the blastema-proximal region. In X-ray-irradiated planarians, which had lost regenerative capacity, the number of DjvlgA-expressing cells decreased drastically. These results suggest that the product of DjvlgA may be a component of the chromatoid body and may be involved in the totipotency of the neoblast.
- Published
- 1999
- Full Text
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25. The planarian P2X homolog in the regulation of asexual reproduction
- Author
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Tomomi Kudome-Takamatsu, Osamu Nishimura, Hayoung Lee, Kiyokazu Agata, Yumi Saito, Makoto Kashima, Tetsutaro Hayashi, Norito Shibata, and Toshihide Sakurai
- Subjects
Embryology ,Blotting, Western ,Real-Time Polymerase Chain Reaction ,Immunoenzyme Techniques ,RNA interference ,Reproduction, Asexual ,Animals ,Regeneration ,RNA, Messenger ,RNA, Small Interfering ,Induced pluripotent stem cell ,Cell Proliferation ,Genetics ,biology ,Reverse Transcriptase Polymerase Chain Reaction ,Regeneration (biology) ,Stem Cells ,Feeding Behavior ,Helminth Proteins ,Planarians ,biology.organism_classification ,Phenotype ,Cell biology ,Planarian ,Dugesia japonica ,Stem cell ,Developmental Biology ,Adult stem cell - Abstract
The growth in size of freshwater planarians in response to nutrient intake is limited by the eventual separation of tail and body fragments in a process called fission. The resulting tail fragment regenerates the entire body as an artificially amputated tail fragment would do, and the body fragment regenerates a tail, resulting in two whole planarians. This regenerative ability is supported by pluripotent somatic stem cells, called neoblasts, which are distributed throughout almost the entire body of the planarian. Neoblasts are the only planarian cells with the ability to continuously proliferate and give rise to all types of cells during regeneration, asexual reproduction, homeostasis, and growth. In order to investigate the molecular characteristics of neoblasts, we conducted an extensive search for neoblast-specific genes using the High Coverage Expression Profiling (HiCEP) method, and tested the function of the resulting candidates by RNAi. Disruption of the expression of one candidate gene, DjP2X-A (Dugesia japonica membrane protein P2X homologue), resulted in a unique phenotype. DjP2X-A RNAi leads to an increase of fission events upon feeding. We confirmed by im-munohistochemistry that DjP2X-A is a membrane protein, and elucidated its role in regulating neoblast proliferation, thereby explaining its unique phenotype. We found that DjP2X-A decreases the burst of neoblast proliferation that normally occurs after feeding. We also found that DjP2X-A is required for normal proliferation in starved animals. We propose that DjP2X-A modulates stem cell proliferation in response to the nutritional condition.
- Published
- 2012
26. Role of c-Jun N-terminal kinase activation in blastema formation during planarian regeneration
- Author
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Junichi, Tasaki, Norito, Shibata, Toshihide, Sakurai, Kiyokazu, Agata, and Yoshihiko, Umesono
- Subjects
Anthracenes ,Enzyme Activation ,G2 Phase ,JNK Mitogen-Activated Protein Kinases ,Animals ,Regeneration ,Helminth Proteins ,Planarians ,Cell Division ,Signal Transduction - Abstract
The robust regenerative abilities of planarians absolutely depend on a unique population of pluripotent stem cells called neoblasts, which are the only mitotic somatic cells in adult planarians and are responsible for blastema formation after amputation. Little is known about the molecular mechanisms that drive blastema formation during planarian regeneration. Here we found that treatment with the c-Jun N-terminal kinase (JNK) inhibitor SP600125 blocked the entry of neoblasts into the M-phase of the cell cycle, while allowing neoblasts to successfully enter S-phase in the planarian Dugesia japonica. The rapid and efficient blockage of neoblast mitosis by treatment with the JNK inhibitor provided a method to assess whether temporally regulated cell cycle activation drives blastema formation during planarian regeneration. In the early phase of blastema formation, activated JNK was detected prominently in a mitotic region (the "postblastema") proximal to the blastema region. Furthermore, we demonstrated that undifferentiated mitotic neoblasts in the postblastema showed highly activated JNK at the single cell level. JNK inhibition by treatment with SP600125 during this period caused a severe defect of blastema formation, which accorded with a drastic decrease of mitotic neoblasts in regenerating animals. By contrast, these animals still retained many undifferentiated neoblasts near the amputation stump. These findings suggest that JNK signaling plays a crucial role in feeding into the blastema neoblasts for differentiation by regulating the G2/M transition in the cell cycle during planarian regeneration.
- Published
- 2011
27. [Planarian RNA world]
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Kiyokazu, Agata and Norito, Shibata
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Inclusion Bodies ,Proteomics ,Gene Expression Profiling ,Multiprotein Complexes ,Stem Cells ,Animals ,RNA-Binding Proteins ,Cell Differentiation ,Cell Separation ,Helminth Proteins ,Planarians ,RNA, Helminth - Published
- 2010
28. Single-cell gene profiling of planarian stem cells using fluorescent activated cell sorting and its 'index sorting' function for stem cell research
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Tetsutaro, Hayashi, Norito, Shibata, Ryo, Okumura, Tomomi, Kudome, Osamu, Nishimura, Hiroshi, Tarui, and Kiyokazu, Agata
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G2 Phase ,Male ,Reverse Transcriptase Polymerase Chain Reaction ,Gene Expression Profiling ,Stem Cells ,Cell Separation ,Helminth Proteins ,Planarians ,Flow Cytometry ,S Phase ,Research Design ,Proliferating Cell Nuclear Antigen ,Animals ,Cluster Analysis ,Female ,Cell Division ,Genes, Helminth ,In Situ Hybridization - Abstract
To achieve an integrated understanding of the stem cell system of planarians at both the cellular and molecular levels, we developed a new method by combining "fluorescent activated cell sorting (FACS) index sorting" analysis and single-cell reverse transcription-polymerase chain reaction (RT-PCR) to detect the gene expression and cell cycle state of stem cells simultaneously. Single cells were collected using FACS, and cDNAs of each cell were used for semi-quantitative RT-PCR. The results were plotted on the FACS sorting profile using the "index sorting" function, which enabled us to analyze the gene expression in combination with cell biological data (such as cell cycle phase) for each cell. Here we investigated the adult stem cells of planarians using this method and obtained findings suggesting that the stem cells might undergo commitment during S to G2/M phase. This method could be a powerful and straightforward tool for examining the stem cell biology of not only planarians but also other organisms, including vertebrates.
- Published
- 2010
29. Cellular and molecular dissection of pluripotent adult somatic stem cells in planarians
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Norito, Shibata, Labib, Rouhana, and Kiyokazu, Agata
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Pluripotent Stem Cells ,Microscopy, Electron, Transmission ,Animals ,Gene Expression Regulation, Developmental ,Regeneration ,Cell Differentiation ,Planarians ,Models, Biological ,Genes, Helminth - Abstract
Freshwater planarians, Plathelminthes, have been an intriguing model animal of regeneration studies for more than 100 years. Their robust regenerative ability is one of asexual reproductive capacity, in which complete animals develop from tiny body fragments within a week. Pluripotent adult somatic stem cells, called neoblasts, assure this regenerative ability. Neoblasts give rise to not only all types of somatic cells, but also germline cells. During the last decade, several experimental techniques for the analysis of planarian neoblasts at the molecular level, such as in situ hybridization, RNAi and fluorescence activated cell sorting, have been established. Moreover, information about genes involved in maintenance and differentiation of neoblasts has been accumulated. One of the molecular features of neoblasts is the expression of many RNA regulators, which are involved in germline development in other animals, such as vasa and piwi family genes. In this review, we introduce physiological and molecular features of the neoblast, and discuss how germline genes regulate planarian neoblasts and what differences exist between neoblasts and germline cells.
- Published
- 2010
30. Identification and origin of the germline stem cells as revealed by the expression of nanos-related gene in planarians
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Satoru Kobayashi, Kenji Watanabe, Kimihiro Sato, Hidefumi Orii, Norito Shibata, Kiyokazu Agata, Reiko Amikura, and Takashige Sakurai
- Subjects
Genetics ,Regulation of gene expression ,biology ,Regeneration (biology) ,Stem Cells ,Molecular Sequence Data ,Gene Expression Regulation, Developmental ,Cell Biology ,Helminth Proteins ,Planarians ,biology.organism_classification ,Germline ,Cell biology ,DNA-Binding Proteins ,Germ Cells ,Planarian ,Dugesia japonica ,Animals ,Chromatoid body ,Amino Acid Sequence ,Stem cell ,Genes, Helminth ,Developmental Biology ,Adult stem cell - Abstract
The planarian's remarkable regenerative ability is thought to be supported by the stem cells (neoblasts) found throughout its body. Here we report the identification of a subpopulation of neoblasts, which was revealed by the expression of the nanos-related gene of the planarian Dugesia japonica, termed Djnos. Djnos-expressing cells in the asexual planarian were distributed to the prospective ovary or testes forming region in the sexual planarian. During sexualization, Djnos-expressing cells produce germ cells, suggesting that in the asexual state these cells were kept as germline stem cells for the oogonia and spermatogonia. Interestingly, the germline stem cells were indistinguishable from the neoblasts by morphology and X-ray sensitivity and did not seem to contribute to the regeneration at all. Germline stem cells initially appear in the growing infant planarian, suggesting that germline stem cells are separated from somatic stem cells in the planarian. Thus, planarian neoblasts can be classified into two groups; somatic stem cells for regeneration and tissue renewal, and germline stem cells for production of germ cells during sexualization. However, Djnos-positive cells appeared in the newly formed trunk region from the head piece, suggesting that somatic stem cells can convert to germline stem cells.
- Published
- 2006
31. Isolation of planarian X-ray-sensitive stem cells by fluorescence-activated cell sorting
- Author
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Sayaka Higuchi, Norito Shibata, Tetsutaro Hayashi, Kiyokazu Agata, and Maki Asami
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Cell ,Fluorescent Antibody Technique ,Gene Expression ,Helminth genetics ,Cell Separation ,Biology ,Schmidtea mediterranea ,Microscopy, Electron, Transmission ,medicine ,Animals ,Microscopy, Phase-Contrast ,Fluorescent Dyes ,Reverse Transcriptase Polymerase Chain Reaction ,Stem Cells ,X-Rays ,Cell Biology ,Planarians ,Cell sorting ,biology.organism_classification ,Flow Cytometry ,Cell biology ,medicine.anatomical_structure ,Planarian ,Cytoplasm ,Stem cell ,RNA, Helminth ,Biomarkers ,Developmental Biology ,Adult stem cell - Abstract
The remarkable capability of planarian regeneration is mediated by a group of adult stem cells referred to as neoblasts. Although these cells possess many unique cytological characteristics (e.g. they are X-ray sensitive and contain chromatoid bodies), it has been difficult to isolate them after cell dissociation. This is one of the major reasons why planarian regenerative mechanisms have remained elusive for a long time. Here, we describe a new method to isolate the planarian adult stem cells as X-ray-sensitive cell populations by fluorescence-activated cell sorting (FACS). Dissociated cells from whole planarians were labeled with fluorescent dyes prior to fractionation by FACS. We compared the FACS profiles from X-ray-irradiated and non-irradiated planarians, and thereby found two cell fractions which contained X-ray-sensitive cells. These fractions, designated X1 and X2, were subjected to electron microscopic morphological analysis. We concluded that X-ray-sensitive cells in both fractions possessed typical stem cell morphology: an ovoid shape with a large nucleus and scant cytoplasm, and chromatoid bodies in the cytoplasm. This method of isolating X-ray-sensitive cells using FACS may provide a key tool for advancing our understanding of the stem cell system in planarians.
- Published
- 2006
32. Two different evolutionary origins of stem cell systems and their molecular basis
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Yumi Saito, Yoshihiko Umesono, Noriko Funayama, Elizabeth Nakajima, Kiyokazu Agata, and Norito Shibata
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Pluripotent Stem Cells ,Cellular differentiation ,Asexual reproduction ,Models, Biological ,Evolution, Molecular ,Botany ,Reproduction, Asexual ,medicine ,Animals ,Induced pluripotent stem cell ,Gene ,Neurons ,biology ,Stem Cells ,Hematopoietic stem cell ,Cell Differentiation ,Cell Biology ,biology.organism_classification ,Hematopoietic Stem Cells ,medicine.anatomical_structure ,Germ Cells ,Evolutionary biology ,Planarian ,Stem cell ,Developmental Biology ,Stem cell lineage database - Abstract
We propose two major evolutionary origins of stem cell systems in the animal kingdom. Adult pluripotent stem cell systems are found in many invertebrates and probably evolved as components of asexual reproduction. Lineage-specific stem cell systems probably evolved later and include neural and hematopoietic stem cell types. We propose that these two types of stem cell systems evolved independently. The vasa-like genes regulate reproductive stem cells, but not lineage-specific stem cells, which may be regulated by gcm genes. Here, we review the evidence for the molecular basis for the evolutionary origin of these two different stem cell systems.
- Published
- 2006
33. RNA interference by feeding in vitro-synthesized double-stranded RNA to planarians: Methodology and dynamics
- Author
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Ryan S. King, Labib Rouhana, Phillip A. Newmark, Takeshi Inoue, Norito Shibata, David J. Forsthoefel, Hayoung Lee, Kiyokazu Agata, and Jennifer A. Weiss
- Subjects
RNA silencing ,biology ,RNA interference ,Planarian ,Dynamics (mechanics) ,Double stranded rna ,biology.organism_classification ,In vitro ,Developmental Biology ,Cell biology - Published
- 2013
- Full Text
- View/download PDF
34. 19-P035 Cellular and molecular dynamics of stem cell differentiation during planarian regeneration
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Junichi Tasaki, Osamu Nishimura, Kazu Itomi, Yoshihiko Umesono, Ryoko Araki, Kiyokazu Agata, Masumi Abe, Norito Shibata, Nobuko Suzuki, Fuyan Son, and Yoshimichi Tabata
- Subjects
Embryology ,biology ,Planarian ,Regeneration (biology) ,Cellular differentiation ,biology.organism_classification ,Developmental Biology ,Cell biology - Published
- 2009
- Full Text
- View/download PDF
35. Mouse RanBPM is a partner gene to a germline specific RNA helicase, mouse vasa homolog protein.
- Author
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Norito Shibata, Naoki Tsunekawa, Shino Okamoto-Ito, Ryuko Akasu, Ako Tokumasu, and Toshiaki Noce
- Published
- 2004
- Full Text
- View/download PDF
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