21 results on '"Nordeide JT"'
Search Results
2. Population connectivity among migratory and stationary cod Gadus morhua in the Northeast Atlantic—A review of 80 years of study
- Author
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Nordeide, JT, primary, Johansen, SD, additional, Jørgensen, TE, additional, Karlsen, BO, additional, and Moum, T, additional
- Published
- 2011
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3. Does egg carotenoid improve larval quality in Arctic charr ( Salvelinus alpinus )?
- Author
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Egeland TB, Egeland ES, and Nordeide JT
- Abstract
Females in mutually ornamented species are often less conspicuously ornamented than their male conspecifics. It has been hypothesized that offspring quality may decrease if females invest more resources into ornaments at the expense of resources in eggs. An experiment was carried out to test whether natural variation in carotenoid in the eggs from a wild population of Arctic charr ( Salvelinus alpinus ) was associated with survival and growth of their offspring until hatching. Wild Arctic charr were caught at a spawning ground during the spawning period. Eggs from two different females, one female with yellowish carotenoid-rich eggs and one with paler eggs, were fertilized by sperm from the same male. This was repeated until gametes were collected from 42 females and 21 males, giving a total of 21 groups. After fertilization, the zygotes from each of the two females were reared in four replicated groups. These 168 groups were reared separately until hatching when the surviving larvae were counted and their body length measured. For the two response variables survival and body length at hatching, no effect was demonstrated of any of the predictors (i) amount of carotenoid in the unfertilized eggs, (ii) the mothers' body condition, or (iii) ornament intensity of their red carotenoid-based abdominal ornament. Thus, this study gives no support for the hypothesis that females investing less carotenoid into their eggs suffer from decreased offspring quality until hatching. This lack of association between female ornament intensity and their fitness is not as expected if female ornaments evolved due to direct sexual selection from males on the more ornamented females ("direct selection hypothesis")., Competing Interests: None declared., (© 2022 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd.)
- Published
- 2022
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4. Cohabitation With Atlantic Salmon ( Salmo salar ) Affects Brain Neuromodulators But Not Welfare Indicators in Lumpfish ( Cyclopterus lumpus ).
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Staven FR, Gesto M, Iversen MH, Andersen P, Patel DM, Nordeide JT, and Kristensen T
- Abstract
Lumpfish are utilized to combat ectoparasitic epidemics in salmon farming. Research gaps on both cleaning behavior and client preferences in a natural environment, emphasizes the need to investigate the physiological impacts on lumpfish during cohabitation with piscivorous Atlantic salmon. Lumpfish (39.9 g, S.D ± 8.98) were arranged in duplicate tanks ( n = 40 per treatment) and exposed to Live Atlantic salmon (245.7 g, S.D ± 25.05), salmon Olfaction or lifelike salmon Models for 6 weeks. Growth and health scores were measured every second week. In addition, the final sampling included measurements of neuromodulators, body color, and plasma cortisol. A stimulation and suppression test of the hypothalamic-pituitary-interrenal (HPI) axis was used for chronic stress assessment. Results showed that growth, health scores, and body color remained unaffected by treatments. Significant reductions in levels of brain dopamine and norepinephrine were observed in Live compared to Control. Plasma cortisol was low in all treatments, while the stimulation and suppression test of the HPI axis revealed no indications of chronic stress. This study presents novel findings on the impact on neuromodulators from Atlantic salmon interaction in the lumpfish brain. We argue that the downregulation of dopamine and norepinephrine indicate plastic adjustments to cohabitation with no negative effect on the species. This is in accordance with no observed deviations in welfare measurements, including growth, health scores, body color, and stress. We conclude that exposure to salmon or salmon cues did not impact the welfare of the species in our laboratory setup, and that neuromodulators are affected by heterospecific interaction., Competing Interests: FS and PA were employed by Aqua Kompetanse AS. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Staven, Gesto, Iversen, Andersen, Patel, Nordeide and Kristensen.)
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- 2022
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5. Cannibalism and protective behavior of eggs in Arctic charr ( Salvelinus alpinus ).
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Frye M, Egeland TB, Nordeide JT, and Folstad I
- Abstract
From video recordings of spawning events, we quantified protective and cannibalistic behavior of Arctic charr occurring immediately after spawning. The number of fish cannibalizing on stray eggs was examined regarding (a) whether more than one male shed milt during the spawning event, that is, whether sperm competition occurred, (b) whether the sperm competition included few or many males, that is, the intensity of sperm competition, and (c) the density of fish at the spawning site. Response behavior toward egg cannibalism was also examined among females and dominant males in order to determine any parental investment toward protecting the eggs after spawning. Cannibalistic behavior was seen in almost 50% of the spawnings, and the multiple spawning events showed the highest numbers of fish cannibalizing on eggs. Both the number of males releasing milt and the number of fish approaching the spawning site were positively correlated with egg cannibalism. Sperm competition was, however, not a prerequisite for egg cannibalism. Although we also observed partial filial cannibalism, protective behavior of eggs was seen both among dominant males and females, suggesting that charr actually conduct parental care., Competing Interests: None declared., (© 2021 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd.)
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- 2021
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6. Carotenoids-based reddish pelvic spines in nonreproducing female and male sticklebacks ( Gasterosteus aculeatus ) - Signalling social dominance?
- Author
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Kroken KK, Sæthre AA, Nicolaisen O, Egeland TB, and Nordeide JT
- Abstract
Conspicuous ornaments are often considered a result of evolution by sexual selection. According to the social selection hypothesis, such conspicuous traits may also evolve as badges of status associated with increased boldness or aggression toward conspecifics in conflicts about ecological resources. This study tested predictions from the social selection hypothesis to explain evolution of conspicuous red color of the pelvic spines of the three-spine stickleback ( Gasterosteus aculeatus ). Wild nonreproducing sticklebacks were presented to pairs of dummies which differed at their pelvic spines, having either (i) normal-sized gray or red pelvic spines or (ii) normal-sized gray or large red pelvic spines. The experimental tank was illuminated by white or green light, since green light impedes the sticklebacks' ability to detect red color. The dummies moved slowly around in circles at each end of the experimental tank. We quantified the parameters (i) which of the two dummies was visited first, (ii) time taken before the first visit to a dummy, (iii) distribution of the focal sticklebacks in the two zones close to each of the two dummies and in the neutral zone of the tank, (iv) close to which of the two dummies did the focal fish eat its first food-piece, and (v) time spent until the first piece of food was eaten. This was carried out for 22 females and 29 males sticklebacks. The results suggested no effect of the color or size of the dummies' pelvic spines, on none of the five behavioral parameters. Moreover, neither the color of the pelvic spines of the focal sticklebacks themselves (as opposed to redness of the dummies' spines) nor their body length was associated with behavior toward the dummies. Thus, this study did not support predictions from the social selection hypothesis to explain evolution of red pelvic spines in sticklebacks., Competing Interests: None declared., (© 2021 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd.)
- Published
- 2021
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7. Accuracy of body mass estimates of formalin-preserved fish - a review.
- Author
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Nordeide JT
- Subjects
- Animals, Body Mass Index, Fresh Water, Osmotic Pressure, Preservation, Biological standards, Salinity, Seawater, Fishes anatomy & histology, Fixatives, Formaldehyde, Preservation, Biological veterinary
- Abstract
This paper highlights possible effects of physical and chemical mechanisms of formalin fixation and preservation on biological tissue and reviews the consequent potential inaccuracies on estimates of body mass of small fishes fixed and preserved in formalin. Twenty-six papers including 65 independent experiments with 35 species which examine effects of formalin on body mass estimates on small fishes are included. The effect of the formalin on the specimens depends on the salinity of the water used to dilute the commercial formalin (usually 1:9 formalin: water) before being used to fixate and preserve fish. Mean wet body mass of the specimens from the studies using seawater or fresh water diluted formalin deceases by 13% and increases by 7%, respectively, from before to after being immersed in formalin. The same trend is found with condition factor in the few papers that report this parameter. Body length decreases on average by c. 2% in fixated and preserved fish regardless of whether the formalin is diluted in seawater or fresh water., (© 2019 The Fisheries Society of the British Isles.)
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- 2020
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8. Fish sperm competition in hatcheries and between wild and hatchery origin fish in nature.
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Beirão J, Egeland TB, Purchase CF, and Nordeide JT
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- Animals, Aquaculture, Fisheries, Male, Reproduction, Sperm Motility, Fishes physiology, Spermatozoa physiology
- Abstract
Males compete pre- and post-mating to fertilize the maximum number of eggs. In polyandry, sperm competition occurs when sperm from two or more males compete to fertilize eggs from a female. Here we review how sperm competition from hatchery origin fish can cause loss of genetic variability in fish populations kept in captivity and in wild populations. In fish hatchery practices, sperm competition occurs in mass spawners that release gametes in tanks, and in artificial fertilizations when pooled semen is used. In mass spawnings sperm competition is difficult to tease apart from pre-mating competition and other post-mating selective mechanisms, whereas, studies focused on the use of pooled semen in different fish species have shown a clear relationship between sperm motility parameters and precedence in fertilization. In both situations, sperm competition will result in a loss of genetic variability that accumulates over generations, but hatchery protocols can be adjusted to mitigate it. Another source of concern regarding sperm competition for hatchery produced fish is the spatial and temporal overlap in spawning with wild individuals, either via aquaculture escapees or purposeful stocking programs. This may result in sperm competition between hatchery origin and wild males and impact natural populations. Our review suggests that in order to give every adult selected as broodstock an equal opportunity to produce offspring in captivity, mass spawning and the use of pooled semen should be limited., (Copyright © 2019 Elsevier Inc. All rights reserved.)
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- 2019
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9. Is Habituation Measurable in Lumpfish Cyclopterus lumpus When Used as Cleaner Fish in Atlantic Salmon Salmo salar Aquaculture?
- Author
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Staven FR, Nordeide JT, Imsland AK, Andersen P, Iversen NS, and Kristensen T
- Abstract
To investigate how lumpfish interact in Atlantic salmon aquaculture, physiological stress responses and changes in behaviour were analysed in experienced and naive lumpfish. Experienced lumpfish (30.2 ± 7.93 g, mean ± SD) coexisted with a commercial scale production unit of Atlantic salmon (1258.5 ± 152.12 g) for 30 to 60 days, while naive lumpfish (38.2 ± 12.37 g) were kept with conspecifics only. Ten trials from each background were tested. For each trial, 10 lumpfish were tagged and transferred to a video monitored experimental tank (2 × 2 × 0.7 m). In each trial, swimming behaviour was mapped for all lumpfish every 60 s in 20 min, 10 min before, and 10 min after the introduction of four Atlantic salmon. Naive lumpfish expressed significantly increased burst swimming activity and maintained longer interspecific distance to Atlantic salmon in comparison with experienced fish. In addition, mean plasma cortisol levels were significantly elevated in naive fish after exposure to Atlantic salmon. We argue that naive lumpfish expressed innate physiological and behavioural stress responses during first encounter with Atlantic salmon, while reduced responses in experienced individuals indicated habituation. The effect from behavioural and physiological stress in newly deployed naive lumpfish-before and during habituation-should be taken account for when lumpfish are introduced in commercial sea cages to improve welfare for the species. In addition, we suggest that habituation could be applicable during the rearing phase to moderate the transition from a simple tank environment with conspecifics only to interspecies interaction with Atlantic salmon in sea cages.
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- 2019
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10. A mitochondrial long noncoding RNA in atlantic cod harbors complex heteroplasmic tandem repeat motifs.
- Author
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Jørgensen TE, Karlsen BO, Emblem Å, Jakt LM, Nordeide JT, Moum T, and Johansen SD
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- Animals, Maternal Inheritance, Polymorphism, Genetic, DNA, Mitochondrial genetics, Gadus morhua genetics, RNA, Long Noncoding genetics, Tandem Repeat Sequences
- Abstract
A heteroplasmic tandem repeat (HTR) array occupies 100 to 300 bp of the mitochondrial DNA control region in the Atlantic cod, and recently we noted that the repeat appeared integrated in a polyadenylated mitochondrial long noncoding RNA. Here we provide a more detailed analysis of the mitochondrial HTR in the mitochondrial genome of 134 Atlantic cod specimens. We report all specimens to harbor mitochondrial HTRs in the control region, and identified 26 distinct variants among the 402 repeat motifs assessed. Whereas most specimens contained HTR profiles of 2-5 copies consisting of the same 40-bp motif, 22 specimens showed compound HTR arrays of at least two types of motifs present in the same mitochondrial DNA molecule. We found HTR profiles to be highly conserved between different tissue types of a single individual, and strictly maternally inherited in a mating experiment between parental Atlantic cod expressing different HTR profiles and array motifs. We conclude that mitochondrial heteroplasmy in the control region is very common in Atlantic cod, and results in length heterogenity of the long noncoding RNA lncCR-H.
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- 2019
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11. No support for cryptic choice by ovarian fluid in an external fertilizer.
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Kleppe SA, Nordeide JT, Rudolfsen G, Figenschou L, Larsen B, Reiss K, and Folstad I
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Whether the ovarian fluid (OF) represents a selective environment influencing cryptic female choice was tested using an external fertilizer experiencing intense sperm competition and large effects of OF on sperm swimming behavior-the Arctic charr ( Salvelinus alpinus ). We physically separated the OF from the eggs of reproductively active females and reintroduced either their own OF or fluid from another female to the eggs. The eggs were then fertilized in vitro in a replicated split-brood design with sperm from two males under synchronized sperm competition trials, while also measuring sperm velocity of the individual males in the individual OFs. We found large effects of males, but no effect of females (i.e., eggs) on paternity, determined from microsatellites. More important, we found no effect of OF treatments on the relative paternity of the two competing males in each pair. This experimental setup does not provide support for the hypothesis that OF plays an important role as medium for cryptic female choice in charr. Power analyses revealed that our sample size is large enough to detect medium-sized changes in relative paternity (medium-sized effect sizes), but not large enough to detect small changes in relative paternity. More studies are needed before a conclusion can be drawn about OF's potential influence on paternity under sperm competition-even in charr.
- Published
- 2018
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12. Spawning behavior of Arctic charr ( Salvelinus alpinus ): Spawning synchrony, vibrational communication, and mate guarding.
- Author
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Brattli MB, Egeland TB, Nordeide JT, and Folstad I
- Abstract
A mismatch in synchrony between male and female gamete release in external fertilizers can result in reduced or failed fertilization, sperm competition, and reduced paternity. In Arctic charr ( Salvelinus alpinus ), males can adopt either a guard or sneak tactic resulting in both pre- and postcopulatory competition between males with alternative reproduction tactics. Here, spawning behavior of free-living Arctic charr was video-recorded, and their reproductive behavior was analyzed. From evaluating 157 spawning events, we observed that females mainly spawned with a guarding male and that the female and the guarding male synchronized timing of gamete release under sperm competition. Although sneakers spawned with higher synchrony than the guarding male in single-male spawning events, the average sneaker released his milt less synchronized with the female than the guarding male under sperm competition. Approximately 50% of the recorded spawning events occurred under sperm competition, where each event included an average of 2.7 males. Additionally, sneakers were more exposed to sperm competition than guarding males. An influx of males, in close proximity to the female, occurred during the behavioral sequences leading up to egg release, but this influx seemed not dependent on egg release, suggesting that something else than gonadal product attracts sneaker males to the spawning female. Just before and during the actual release of gametes, the spawning couple vibrates their bodies in close contact and it seems likely that this vibrational communication between the spawning couple, which results in a larger amplitude sound wave than seen under regular courting, reveals time of gamete release to sneaker males. Thus, vibrational communication may enable synchrony between the guarding male and the female, and this might be traded against the cost of higher detectability from surrounding sneaker males, eavesdropping in close proximity.
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- 2018
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13. Mitochondrial genome variation of Atlantic cod.
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Jørgensen TE, Karlsen BO, Emblem Å, Breines R, Andreassen M, Rounge TB, Nederbragt AJ, Jakobsen KS, Nymark M, Ursvik A, Coucheron DH, Jakt LM, Nordeide JT, Moum T, and Johansen SD
- Subjects
- Animals, Genome, Polymorphism, Single Nucleotide, Sequence Analysis, DNA, DNA, Mitochondrial genetics, Gadus morhua genetics
- Abstract
Objective: The objective of this study was to analyse intraspecific sequence variation of Atlantic cod mitochondrial DNA, based on a comprehensive collection of completely sequenced mitochondrial genomes., Results: We determined the complete mitochondrial DNA sequence of 124 cod specimens from the eastern and western part of the species' distribution range in the North Atlantic Ocean. All specimens harboured a unique mitochondrial DNA haplotype. Nine hundred and fifty-two polymorphic sites were identified, including 109 non-synonymous sites within protein coding regions. Eighteen variable sites were identified as indels, exclusively distributed in structural RNA genes and non-coding regions. Phylogeographic analyses based on 156 available cod mitochondrial genomes did not reveal a clear structure. There was a lack of mitochondrial genetic differentiation between two ecotypes of cod in the eastern North Atlantic, but eastern and western cod were differentiated and mitochondrial genome diversity was higher in the eastern than the western Atlantic, suggesting deviating population histories. The geographic distribution of mitochondrial genome variation seems to be governed by demographic processes and gene flow among ecotypes that are otherwise characterized by localized genomic divergence associated with chromosomal inversions.
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- 2018
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14. Solo Schistocephalus solidus tapeworms are nasty.
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Nordeide JT and Matos F
- Subjects
- Animals, Cestoda growth & development, Cestode Infections parasitology, Flow Cytometry, Parasite Load, Virulence, Cestoda pathogenicity, Cestode Infections veterinary, Fish Diseases parasitology, Host-Parasite Interactions, Smegmamorpha parasitology
- Abstract
Trophically transmitted parasites must trade-off own growth on one hand and energy drain from the intermediate host on the other hand, since killing the host before transmission to the next host is a dead end for both parasites and hosts. This challenge becomes especially intriguing when multiple parasites find themselves within the same individual host. The tapeworm Schistocephalus solidus may gain more than 98% of its final body mass within few months infecting its three-spined stickleback (Gasterosteus aculeatus) intermediate host. During these months the tapeworms may achieve a mass even larger than its host. We studied virulence of single and multiple infections of S. solidus, by comparing body condition of wild stickleback hosts in two perennial stickleback populations located at high latitudes, and each population was studied in two different years. Our results demonstrated multiple compared with single infections to be a highly significant predictor of the condition of stickleback hosts, with multiple-infected hosts having relatively higher body condition. However, this applied only after adjusting for parasite mass, which was another significant predictor for host condition. Thus, our results suggested that, at a given parasite mass, S. solidus was more harmful towards their host's body condition in single compared with multiple infections.
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- 2016
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15. Mitogenome sequence variation in migratory and stationary ecotypes of North-east Atlantic cod.
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Karlsen BO, Emblem Å, Jørgensen TE, Klingan KA, Nordeide JT, Moum T, and Johansen SD
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- Animals, Atlantic Ocean, Base Sequence, Molecular Sequence Data, NADH Dehydrogenase genetics, Polymorphism, Single Nucleotide genetics, Reproductive Isolation, Selection, Genetic, Sequence Analysis, DNA, Ecosystem, Evolution, Molecular, Gadus morhua genetics, Genetic Variation genetics, Genetics, Population, Genome, Mitochondrial genetics
- Abstract
Sequencing of mitochondrial gene fragments from specimens representing a wide range of geographical locations has indicated limited population structuring in Atlantic cod (Gadus morhua). We recently performed whole genome analysis based on next-generation sequencing of two pooled ecotype samples representing offshore migratory and inshore stationary cod from the North-east Atlantic Ocean. Here we report molecular features and variability of the 16.7kb mitogenome component that was collected from the datasets. These sequences represented more than 25 times coverage of each individual and more than 1100 times coverage of each ecotype sample. We estimated the mitogenome to have evolved 14 times more rapidly than the nuclear genome. Among the 365 single nucleotide polymorphism (SNP) sites identified, 121 were shared between ecotypes, and 151 and 93 were private within the migratory and stationary cod, respectively. We found 323 SNPs to be located in protein coding genes, of which 29 were non-synonymous. One synonymous site in ND2 was likely to be under positive selection. FST measurements indicated weak differentiation in ND1 and ND2 between ecotypes. We conclude that the Atlantic cod mitogenome and the nuclear genome apparently evolved by distinct evolutionary constraints, and that the reproductive isolation observed from whole genome analysis was not visible in the mtDNA sequences., (Copyright © 2014 Elsevier B.V. All rights reserved.)
- Published
- 2014
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16. Genomic divergence between the migratory and stationary ecotypes of Atlantic cod.
- Author
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Karlsen BO, Klingan K, Emblem Å, Jørgensen TE, Jueterbock A, Furmanek T, Hoarau G, Johansen SD, Nordeide JT, and Moum T
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- Animals, Atlantic Ocean, Genetic Linkage, Genotype, Polymorphism, Single Nucleotide, Reproductive Isolation, Sequence Analysis, DNA, Animal Migration, Ecotype, Gadus morhua genetics, Genetics, Population
- Abstract
Atlantic cod displays a range of phenotypic and genotypic variations, which includes the differentiation into coastal stationary and offshore migratory types of cod that co-occur in several parts of its distribution range and are often sympatric on the spawning grounds. Differentiation of these ecotypes may involve both historical separation and adaptation to ecologically distinct environments, the genetic basis of which is now beginning to be unravelled. Genomic analyses based on recent sequencing advances are able to document genomic divergence in more detail and may facilitate the exploration of causes and consequences of genome-wide patterns. We examined genomic divergence between the stationary and migratory types of cod in the Northeast Atlantic, using next-generation sequencing of pooled DNA from each of two population samples. Sequence data was mapped to the published cod genome sequence, arranged in more than 6000 scaffolds (611 Mb). We identified 25 divergent scaffolds (26 Mb) with a higher than average gene density, against a backdrop of overall moderate genomic differentiation. Previous findings of localized genomic divergence in three linkage groups were confirmed, including a large (15 Mb) genomic region, which seems to be uniquely involved in the divergence of migratory and stationary cod. The results of the pooled sequencing approach support and extend recent findings based on single-nucleotide polymorphism markers and suggest a high degree of reproductive isolation between stationary and migratory cod in the North-east Atlantic., (© 2013 John Wiley & Sons Ltd.)
- Published
- 2013
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17. Female ornaments revisited - are they correlated with offspring quality?
- Author
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Nordeide JT, Kekäläinen J, Janhunen M, and Kortet R
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- Animals, Female, Pigments, Biological, Biological Evolution, Sex Characteristics
- Abstract
The evolution and signalling content of female ornamentation has remained an enduring challenge to evolutionary biologists, despite the fact that secondary sexual characters are widespread in females. While females usually invest significant amounts of their resources, including carotenoids, in offspring, all the resources allocated to elaborate ornamentation reduce resources available for other purposes. This may in turn constrain female fitness leading to dishonest female signalling. We review the literature for empirical studies on mutually ornamented species with conventional sex roles, by focusing on the association between female ornaments and quality of their offspring. We found 43 papers where 33 (77%) are bird-studies, nine (21%) are on fishes, and one (2%) is a lizard-study. Nine of these report negative, 14 non-existing, and 20 positive associations between female ornament and offspring quality. Eighteen of the bird studies (55%) show a positive association between the two traits investigated, whereas five (15%) of the studies report a negative association. The number of fish studies, although few, is skewed in the opposite direction with two (22%) and four (44%) studies supporting positive and negative association, respectively. A minority of studies on carotenoids-based ornaments reports a positive association (4 of 18 studies, or 22%) between the traits, which is low compared to studies on non-carotenoids-based ornaments (16 of 25 studies, or 64%). The above-mentioned relative large number of studies with negative association, especially common in studies on fishes and in carotenoids-based-ornaments, challenges the generality of the direct selection hypothesis to account for female fineries. This is important because this hypothesis seems to have strong support in recent literature on the topic. In the present paper, we also propose possible explanations for the observed differences between taxa and suggest directions and ideas for future research on the evolution of female ornamentation., (© 2012 The Authors. Journal of Animal Ecology © 2012 British Ecological Society.)
- Published
- 2013
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18. RNA deep sequencing of the Atlantic cod transcriptome.
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Johansen SD, Karlsen BO, Furmanek T, Andreassen M, Jørgensen TE, Bizuayehu TT, Breines R, Emblem A, Kettunen P, Luukko K, Edvardsen RB, Nordeide JT, Coucheron DH, and Moum T
- Subjects
- Animals, Computational Biology, Gene Expression Profiling, MicroRNAs genetics, Gadus morhua genetics, Genome genetics, Sequence Analysis, DNA methods
- Abstract
The Atlantic cod (Gadus morhua) is an emerging aquaculture species. Efforts to develop and characterize its genomic recourses, including draft-grade genome sequencing, have been initiated by the research community. The transcriptome represents the whole complement of RNA transcripts in cells and tissues and reflects the expressed genes at various life stages, tissue types, physiological states, and environmental conditions. We are investigating the Atlantic cod transcriptome by Roche 454, Illumina GA, and ABI SOLiD deep sequencing platforms and corresponding bioinformatics. Both embryonic developmental stages and adult tissues are studied. Here we summarize our recent progress in the analyses of nuclear and mitochondrial polyA mRNAs, non-protein-coding intermediate RNAs, and regulatory microRNAs., (Copyright © 2010 Elsevier Inc. All rights reserved.)
- Published
- 2011
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19. Large-scale sequence analyses of Atlantic cod.
- Author
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Johansen SD, Coucheron DH, Andreassen M, Karlsen BO, Furmanek T, Jørgensen TE, Emblem A, Breines R, Nordeide JT, Moum T, Nederbragt AJ, Stenseth NC, and Jakobsen KS
- Subjects
- Animals, Atlantic Ocean, Base Sequence, Evolution, Molecular, Fisheries, Forecasting, Genetic Markers, Genome, Genome, Mitochondrial, MicroRNAs metabolism, Molecular Sequence Data, Gadus morhua genetics, Sequence Analysis, DNA methods
- Abstract
The Atlantic cod (Gadus morhua) is a key species in the North Atlantic ecosystem and commercial fisheries, with increasing aquacultural production in several countries. A Norwegian effort to sequence the complete 0.9Gbp genome by the 454 pyrosequencing technology has been initiated and is in progress. Here we review recent progress in large-scale sequence analyses of the nuclear genome, the mitochondrial genome and genome-wide microRNA identification in the Atlantic cod. The nuclear genome will be de novo sequenced with 25 times oversampling. A total of 120 mitochondrial genomes, sampled from several locations in the North Atlantic, are being completely sequenced by Sanger technology in a high-throughput pipeline. These sequences will be included in a new database for maternal marker reference of Atlantic cod diversity. High-throughput 454 sequencing, as well as Evolutionary Image Array (EvoArray) informatics, is used to investigate the complete set of expressed microRNAs and corresponding mRNA targets in various developmental stages and tissues. Information about microRNA profiles will be essential in the understanding of transcriptome complexity and regulation. Finally, developments and perspectives of Atlantic cod aquaculture are discussed in the light of next-generation high-throughput sequence technologies.
- Published
- 2009
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20. Ornaments or offspring? Female sticklebacks (Gasterosteus aculeatus L.) trade off carotenoids between spines and eggs.
- Author
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Nordeide JT, Rudolfsen G, and Egeland ES
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- Animals, Erythrocyte Count, Female, Fresh Water, Genitalia, Female physiology, Leukocyte Count, Norway, Sex Characteristics, Smegmamorpha blood, Spine physiology, Carotenoids metabolism, Ovum physiology, Skin Physiological Phenomena, Smegmamorpha anatomy & histology
- Abstract
Hypotheses and models to explain female ornaments often assume that the elaborated traits are condition dependent; nevertheless, few empirical studies have addressed this topic. We studied a population of three-spined sticklebacks (Gasterosteus aculeatus) in which the females have conspicuous, carotenoid-based red coloration to their pelvic spines. The red coloration seems not to be condition dependent, as coloration is negatively associated with age and body length and not associated with condition. Furthermore, redder females did not have a lower density of leucocytes. We found a negative association between the females' red carotenoid-based coloration in the spines and the amount of carotenoids in the female's gonads. Males choosing red-coloured females will fertilize eggs with small amounts of carotenoids and appear not to gain any benefit from their mates' phenotypic quality that could result in offspring of improved quality. These results do not support the 'direct selection hypothesis' to explain the existence of the female ornaments.
- Published
- 2006
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21. Potential fitness benefits from mate selection in the Atlantic cod (Gadus morhua).
- Author
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Rudolfsen G, Figenschou L, Folstad I, Nordeide JT, and Søreng E
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- Animals, Biological Evolution, Female, Fertilization, Male, Population Dynamics, Survival, Gadus morhua genetics, Gadus morhua physiology, Reproduction, Sex Characteristics
- Abstract
Little evidence of benefits from female mate choice has been found when males provide no parental care or resources. Yet, good genes models of sexual selection suggest that elaborated male sexual characters are reliable signals of mate quality and that the offspring of males with elaborate sexual ornaments will perform better than those of males with less elaborate ornaments. We used cod (Gadus morhua L.), an externally fertilizing species where males provide nothing but sperm, to examine the potential of optimal mate selection with respect to offspring survival. By applying in vitro fertilizations, we crossed eight females with nine males in all possible combinations and reared each of the 72 sib groups. We found that offspring survival was dependent on which female was mated with which male and that optimal mate selection has the potential to increase mean offspring survival from 31.9 to 55.6% (a 74% increase). However, the size of the male sexual ornaments and sperm quality (i.e. sperm velocity and sperm density) could not predict offspring survival. Thus, even if there may be large fitness benefits of mate selection, we might not yet have identified the male characteristics generating high offspring survival.
- Published
- 2005
- Full Text
- View/download PDF
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