118 results on '"Nobuaki Okumura"'
Search Results
2. Brazilian green propolis prevent Alzheimer’s disease-like cognitive impairment induced by amyloid beta in mice
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Takashi Ito, Tomomi Degawa, and Nobuaki Okumura
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Alzheimer’s Disease ,Astrocytes ,Brazilian green propolis ,Cognitive impairment ,Microglia ,Other systems of medicine ,RZ201-999 - Abstract
Abstract Background The increasing incidence of cognitive impairment has become a health problem in the aging society. Owing to its antioxidant and anti-inflammatory properties, Brazilian green propolis—derived from Baccharis dracunculifolia—is anticipated to possess anticognitive properties. However, the preventive effect of Brazilian green propolis on cognitive impairment remains unexplained. This study aimed to investigate the effect of Brazilian green propolis on cognitive impairment using a mouse model of Alzheimer’s disease (AD) induced by intracerebroventricular injection of amyloid beta (Aβ)25‒35. Methods Five-week-old male Slc:ddY mice were randomly divided into five groups (n = 8). The groups were pretreated with vehicle and propolis at a dose of 100, 300 and 900 mg/kg body weight for 8 days, then AD-like phenotypes were induced by intracerebroventricular (ICV) injection of Aβ25‒35. A sham operation group was set as the control. Memory and learning ability were measured at 7 to 8 days after ICV injection. Gene expression and histological studies were performed at the endpoint of the study. Results In a passive avoidance test, the administration of Brazilian green propolis prevented the impairment of learning and memory function. Furthermore, comprehensive gene expression analysis in the hippocampus and forebrain cortex revealed that Brazilian green propolis suppressed Aβ25–35-induced inflammatory and immune responses. In particular, Brazilian green propolis prevented alterations in gene expressions of microglial and astrocytic markers such as Trem2 and Lcn2 induced by Aβ25‒35 injection, suggesting the suppression of excessive activation of glial cells in the brain. In addition, Brazilian green propolis suppressed the elevation of plasma interleukin (IL)-6 levels induced by Aβ25‒35 injection. Conclusions The results suggest that the prophylactic administration of Brazilian green propolis has a preventive effect against AD by suppressing excessive inflammation and immune response in glial cells. To our knowledge, this study is the first to demonstrate that Brazilian green propolis may inhibit the hyperactivation of microglia and astrocytes as a mechanism of action to prevent AD. Thus, it is a promising ingredient for preventing AD-type dementia.
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- 2023
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3. A Study of Small Intestinal Epigenomic Changes Induced by Royal Jelly
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Genki Kobayashi, Takahiro Ichikawa, Takuro Okamura, Tomoyuki Matsuyama, Masahide Hamaguchi, Hideto Okamoto, Nobuaki Okumura, and Michiaki Fukui
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royal jelly ,genomics ,epigenomics ,CUT&Tag ,multi-omics ,Cytology ,QH573-671 - Abstract
This study explores the impact of royal jelly (RJ) on small intestinal epigenomic changes. RJ, produced by honeybees, is known for its effects on metabolic diseases. The hypothesis is that RJ induces epigenomic modifications in small intestinal epithelial cells, affecting gene expression and contributing to metabolic health. Male db/m and db/db mice were used to examine RJ’s effects through mRNA sequencing and CUT&Tag methods. This study focused on histone modifications and gene expression changes, with statistical significance set at p < 0.05. RJ administration improved insulin sensitivity and lipid metabolism without affecting body weight. GO and KEGG pathway analyses showed significant enrichment in metabolic processes, cellular components, and molecular functions. RJ altered histone modifications, increasing H3K27me3 and decreasing H3K23Ac in genes associated with the G2M checkpoint. These genes, including Smc2, Mcm3, Ccnd1, Rasal2, Mcm6, and Mad2l1, are linked to cancer progression and metabolic regulation. RJ induces beneficial epigenomic changes in small intestinal epithelial cells, improving metabolic health and reducing cancer-associated gene expression. These findings highlight RJ’s potential as a therapeutic agent for metabolic disorders. Further research is needed to fully understand the mechanisms behind these effects and their implications for human health.
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- 2024
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4. Brazilian green propolis improves gut microbiota dysbiosis and protects against sarcopenic obesity
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Takuro Okamura, Masahide Hamaguchi, Ryo Bamba, Hanako Nakajima, Yuta Yoshimura, Tomonori Kimura, Yoshitaka Hashimoto, Saori Majima, Takafumi Senmaru, Emi Ushigome, Naoko Nakanishi, Mai Asano, Masahiro Yamazaki, Yuichiro Nishimoto, Takuji Yamada, Chizuru Fujikura, Takashi Asama, Nobuaki Okumura, Hiroshi Takakuwa, Ryoichi Sasano, and Michiaki Fukui
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Brazilian green propolis ,Propolis ,Sarcopenic obesity ,Metabolite ,Gut microbiota ,Diseases of the musculoskeletal system ,RC925-935 ,Human anatomy ,QM1-695 - Abstract
Abstract Introduction Brazilian green propolis is an important honeybee product that is considered beneficial for health. Here, we examined the therapeutic potential of dietary supplementation with propolis against sarcopenic obesity using Db/Db mice. Methods Db/m mice fed a normal diet alone and Db/Db mice fed normal diet alone, or supplemented with different amounts of propolis (0.08, 0.4 and 2%), were examined for effects on sarcopenic obesity. Results Propolis improved the glucose tolerance (P
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- 2022
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5. ACE2 N-glycosylation modulates interactions with SARS-CoV-2 spike protein in a site-specific manner
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Ayana Isobe, Yasuha Arai, Daisuke Kuroda, Nobuaki Okumura, Takao Ono, Shota Ushiba, Shin-ichi Nakakita, Tomo Daidoji, Yasuo Suzuki, Takaaki Nakaya, Kazuhiko Matsumoto, and Yohei Watanabe
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Biology (General) ,QH301-705.5 - Abstract
Three glycosylation sites on the cellular receptor for SARS-CoV-2, ACE2, are probed for interactions with the spike protein and cooperativity.
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- 2022
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6. Royal Jelly Enhances the Ability of Myoblast C2C12 Cells to Differentiate into Multilineage Cells
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Takumi Ito, Thira Rojasawasthien, Sachiko Yamashita Takeuchi, Hideto Okamoto, Nobuaki Okumura, Tomohiko Shirakawa, Takuma Matsubara, Tatsuo Kawamoto, and Shoichiro Kokabu
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C2C12 ,royal jelly ,myogenesis ,osteoblastogenesis ,adipogenesis ,RNA-seq ,Organic chemistry ,QD241-441 - Abstract
Royal jelly (RJ) is recognized as beneficial to mammalian health. Multilineage differentiation potential is an important property of mesenchymal stem cells (MSCs). C2C12 cells have an innate ability to differentiate into myogenic cells. Like MSCs, C2C12 cells can also differentiate into osteoblast- and adipocyte-lineage cells. We recently reported that RJ enhances the myogenic differentiation of C2C12 cells. However, the effect of RJ on osteoblast or adipocyte differentiation is still unknown. Here in this study, we have examined the effect of RJ on the osteoblast and adipocyte differentiation of C2C12 cells. Protease-treated RJ was used to reduce the adverse effects caused by RJ supplementation. To induce osteoblast or adipocyte differentiation, cells were treated with bone morphogenetic proteins (BMP) or peroxisome proliferator-activated receptor γ (PPARγ) agonist, respectively. RNA-seq was used to analyze the effect of RJ on gene expression. We found that RJ stimulates osteoblast and adipocyte differentiation. RJ regulated 279 genes. RJ treatment upregulated glutathione-related genes. Glutathione, the most abundant antioxidative factor in cells, has been shown to promote osteoblast differentiation in MSC and MSC-like cells. Therefore, RJ may promote osteogenesis, at least in part, through the antioxidant effects of glutathione. RJ enhances the differentiation ability of C2C12 cells into multiple lineages, including myoblasts, osteoblasts, and adipocytes.
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- 2024
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7. Multiple antiviral activities of the antimalarial and anti-hepatitis C drug candidates N-89 and N-251
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Youki Ueda, Weilin Gu, Hiromichi Dansako, Hye-Sook Kim, Sayaka Yoshizaki, Nobuaki Okumura, Tomohiro Ishikawa, Hironori Nishitsuji, Fumihiro Kato, Takayuki Hishiki, Shinya Satoh, Koji Ishii, Michiaki Masuda, Kunitada Shimotohno, Masanori Ikeda, and Nobuyuki Kato
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Biology (General) ,QH301-705.5 ,Biochemistry ,QD415-436 - Abstract
The chemically synthesized endoperoxide compound N-89 and its derivative N-251 were shown to have potent antimalarial activity. We previously demonstrated that N-89 and N-251 potently inhibited the RNA replication of hepatitis C virus (HCV), which belongs to the Flaviviridae family. Since antimalarial and anti-HCV mechanisms have not been clarified, we were interested whether N-89 and N-251 possessed the activity against viruses other than HCV. In this study, we examined the effects of N-89 and N-251 on other flaviviruses (dengue virus and Japanese encephalitis virus) and hepatitis viruses (hepatitis B virus and hepatitis E virus). Our findings revealed that N-89 and N-251 moderately inhibited the RNA replication of Japanese encephalitis virus and hepatitis E virus, although we could not detect those anti-dengue virus activities. We also observed that N-89 and N-251 moderately inhibited the replication of hepatitis B virus at the step after viral translation. These results suggest the possibility that N-89 and N-251 act on some common host factor(s) that are necessary for viral replications, rather than the possibility that N-89 and N-251 directly act on the viral proteins except for HCV. We describe a new type of antiviral reagents, N-89 and N-251, which are applicable to multiple different viruses. Keywords: N-89, N-251, Japanese encephalitis virus, Hepatitis E virus, Hepatitis B virus, Multiple antiviral activities
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- 2018
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8. Diversity in protein profiles of individual calcium oxalate kidney stones.
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Nobuaki Okumura, Masao Tsujihata, Chikahiro Momohara, Iwao Yoshioka, Kouzou Suto, Norio Nonomura, Akihiko Okuyama, and Toshifumi Takao
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Medicine ,Science - Abstract
Calcium oxalate kidney stones contain low amounts of proteins, some of which have been implicated in progression or prevention of kidney stone formation. To gain insights into the pathophysiology of urolithiasis, we have characterized protein components of calcium oxalate kidney stones by proteomic approaches. Proteins extracted from kidney stones showed highly heterogeneous migration patterns in gel electrophoresis as reported. This was likely to be mainly due to proteolytic degradation and protein-protein crosslinking of Tamm-Horsfall protein and prothrombin. Protein profiles of calcium oxalate kidney stones were obtained by in-solution protease digestion followed by nanoLC-MALDI-tandem mass spectrometry, which resulted in identification of a total of 92 proteins in stones from 9 urolithiasis patients. Further analysis showed that protein species and their relative amounts were highly variable among individual stones. Although proteins such as prothrombin, osteopontin, calgranulin A and calgranulin B were found in most stones tested, some samples had high contents of prothrombin and osteopontin, while others had high contents of calgranulins. In addition, calgranulin-rich stones had various neutrophil-enriched proteins such as myeloperoxidase and lactotransferrin. These proteomic profiles of individual kidney stones suggest that multiple systems composed of different groups of proteins including leucocyte-derived ones are differently involved in pathogenesis of individual kidney stones depending on situations.
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- 2013
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9. PACAP-deficient mice exhibit light parameter-dependent abnormalities on nonvisual photoreception and early activity onset.
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Chihiro Kawaguchi, Yasushi Isojima, Norihito Shintani, Michiyoshi Hatanaka, Xiaohong Guo, Nobuaki Okumura, Katsuya Nagai, Hitoshi Hashimoto, and Akemichi Baba
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Medicine ,Science - Abstract
BACKGROUND: The photopigment melanopsin has been suggested to act as a dominant photoreceptor in nonvisual photoreception including resetting of the circadian clock (entrainment), direct tuning or masking of vital status (activity, sleep/wake cycles, etc.), and the pupillary light reflex (PLR). Pituitary adenylate cyclase-activating polypeptide (PACAP) is exclusively coexpressed with melanopsin in a small subset of retinal ganglion cells and is predicted to be involved extensively in these responses; however, there were inconsistencies in the previous reports, and its functional role has not been well understood. METHODOLOGY/PRINCIPAL FINDINGS: Here we show that PACAP-deficient mice exhibited severe dysfunctions of entrainment in a time-dependent manner. The abnormalities in the mutant mice were intensity-dependent in phase delay and duration-dependent in phase advance. The knockout mice also displayed blunted masking, which was dependent on lighting conditions, but not completely lost. The dysfunctions of masking in the mutant mice were recovered by infusion of PACAP-38. By contrast, these mutant mice show a normal PLR. We examined the retinal morphology and innervations in the mutant mice, and no apparent changes were observed in melanopsin-immunoreactive cells. These data suggest that the dysfunctions of entrainment and masking were caused by the loss of PACAP, not by the loss of light input itself. Moreover, PACAP-deficient mice express an unusually early onset of activities, from approximately four hours before the dark period, without influencing the phase of the endogenous circadian clock. CONCLUSIONS/SIGNIFICANCE: Although some groups including us reported the abnormalities in photic entrainments in PACAP- and PAC(1)-knockout mice, there were inconsistencies in their results. The time-dependent dysfunctions of photic entrainment in the PACAP-knockout mice described in this paper can integrate the incompatible data in previous reports. The recovery of impaired masking by infusion of PACAP-38 in the mutant mice is the first direct evidence of the relationship between PACAP and masking. These results indicate that PACAP regulates particular nonvisual light responses by conveying parametric light information--that is, intensity and duration. The "early-bird" phenotype in the mutant mice originally reported in this paper supposed that PACAP also has a critical role in daily behavioral patterns, especially during the light-to-dark transition period.
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- 2010
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10. Royal Jelly Increases Hematopoietic Stem Cells in Peripheral Blood: A Double-Blind, Placebo-Controlled, Randomized Trial in Healthy Subjects
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Hideto Okamoto, Akio Ohkuma, Mitsuhiko Kawaguchi, Norihiro Shigematsu, and Nobuaki Okumura
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Article Subject ,Complementary and alternative medicine - Abstract
Objectives. Royal jelly (RJ), produced by honeybees, influences stem cell functions, such as pluripotency maintenance of mouse embryonic stem cells and prevention of aging-related muscle stem cell functional deterioration. Thus, we hypothesized that RJ administration has various health-promoting effects based on stem cells. However, its effects are unknown in humans. In this study, we have attempted for the first time to clarify whether the administration of RJ in humans affects stem cells. Materials and Methods. This randomized, double-blind, placebo-controlled study was performed on healthy subjects (n = 90) who received protease-treated RJ at a dose of 1200 mg/day or placebo daily for four weeks. Also, the participants with a low number of hematopoietic stem cells (HSCs) in peripheral blood were preferentially selected. HSC counts, endothelial progenitor cell (EPC) counts, blood cell counts in peripheral blood, cytokines in serum, and physical conditions were evaluated. Results and Conclusion. Eligible data from 86 subjects (placebo: 42, RJ: 44) who completed the study were analyzed. There were no significant differences between the two groups regarding the changes in peripheral HSC count ( p = 0.103 ), while diastolic blood pressure showed a significant improvement in the RJ group compared to that in the placebo group ( p = 0.032 ). The subgroup analysis excluded 14 subjects who complained of cold symptoms at baseline or within five days of the four-week study. The changes in the HSC populations were significantly higher in the RJ group than those in the placebo group ( p = 0.042 ). No adverse effects were observed in any of the groups. These results suggest that RJ administration affected the peripheral HSC count and may influence stem cell functions. Further research is needed to reveal the various health-promoting benefits of RJ based on stem cells.
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- 2023
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11. Effects of Royal Jelly on Gut Dysbiosis and NAFLD in db/db Mice
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Fukui, Genki Kobayashi, Takuro Okamura, Saori Majima, Takafumi Senmaru, Hiroshi Okada, Emi Ushigome, Naoko Nakanishi, Yuichiro Nishimoto, Takuji Yamada, Hideto Okamoto, Nobuaki Okumura, Ryoichi Sasano, Masahide Hamaguchi, and Michiaki
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royal jelly ,non-alcoholic fatty liver disease ,medium-chain fatty acids ,dysbiosis ,gut microbiota - Abstract
Royal jelly (RJ) is a naturally occurring substance synthesized by honeybees and has various health benefits. Herein, we focused on the medium-chain fatty acids (MCFAs) unique to RJ and evaluated their therapeutic efficacy in treating non-alcoholic fatty liver disease (NAFLD). We examined db/m mice that were exclusively fed a normal diet, db/db mice exclusively fed a normal diet, and db/db mice fed varying RJ quantities (0.2, 1, and 5%). RJ improved NAFLD activity scores and decreased gene expression related to fatty acid metabolism, fibrosis, and inflammation in the liver. RJ regulated innate immunity-related inflammatory responses in the small intestine and decreased the expression of genes associated with inflammation and nutrient absorption transporters. RJ increased the number of operational taxonomic units, the abundance of Bacteroides, and seven taxa, including bacteria that produce short-chain fatty acids. RJ increased the concentrations of RJ-related MCFAs (10-hidroxy-2-decenoic acid, 10-hydroxydecanoic acid, 2-decenedioic acid, and sebacic acid) in the serum and liver. These RJ-related MCFAs decreased saturated fatty acid deposition in HepG2 cells and decreased the gene expression associated with fibrosis and fatty acid metabolism. RJ and RJ-related MCFAs improved dysbiosis and regulated the expression of inflammation-, fibrosis-, and nutrient absorption transporter-related genes, thereby preventing NAFLD.
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- 2023
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12. Cleavage of the Jaw1 C-terminal region enhances its augmentative effect on the Ca2+ release via IP3 receptors
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Takuma Kozono, Chifuyu Jogano, Wataru Okumura, Hiroyuki Sato, Hitomi Matsui, Tsubasa Takagi, Nobuaki Okumura, Toshifumi Takao, Takashi Tonozuka, and Atsushi Nishikawa
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Cell Biology - Abstract
Jaw1 (also known as IRAG2), a tail-anchored protein with 39 carboxyl (C)-terminal amino acids, is oriented to the lumen of the endoplasmic reticulum and outer nuclear membrane. We previously reported that Jaw1, as a member of the KASH protein family, plays a role in maintaining nuclear shape via its C-terminal region. Furthermore, we recently reported that Jaw1 functions as an augmentative effector of Ca2+ release from the endoplasmic reticulum by interacting with the inositol 1,4,5-trisphosphate receptors (IP3Rs). Intriguingly, the C-terminal region is partially cleaved, meaning that Jaw1 exists in the cell in at least two forms – uncleaved and cleaved. However, the mechanism of the cleavage event and its physiological significance remain to be determined. In this study, we demonstrate that the C-terminal region of Jaw1 is cleaved after its insertion by the signal peptidase complex (SPC). Particularly, our results indicate that the SPC with the catalytic subunit SEC11A, but not SEC11C, specifically cleaves Jaw1. Furthermore, using a mutant with a defect in the cleavage event, we demonstrate that the cleavage event enhances the augmentative effect of Jaw1 on the Ca2+ release ability of IP3Rs.
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- 2023
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13. Chemical synthesis of per ‐selenocysteine human epidermal growth factor
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Toshiki Takei, Hideaki Tanaka, Nobuaki Okumura, Toshifumi Takao, Luis Moroder, and Hironobu Hojo
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Pharmacology ,Structural Biology ,Organic Chemistry ,Drug Discovery ,Molecular Medicine ,General Medicine ,Molecular Biology ,Biochemistry - Abstract
Human seleno-epidermal growth factor (seleno-EGF), a 53-residue peptide where all six cysteine residues of the parent human EGF sequence were replaced by selenocysteines, was synthesized and the oxidative folding of a polypeptide containing three diselenide bonds was compared to that of the parent cysteine peptide. The crude high performance liquid chromatography (HPLC) profiles clearly showed that both the native EGF and its selenocysteine-analogue fold smoothly, yielding a single sharp peak, proving that even in the case of three disulfide-bonded polypeptides the disulfide-to-diselenide bond substitution is highly isomorphous, as confirmed by conformational circular dichroism measurements and particularly by the biological assays.
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- 2022
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14. Cleavage of the Jaw1 C-terminal region enhances its augmentative effect on the Ca2+release via inositol 1,4,5-trisphosphate receptors
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Takuma Kozono, Chifuyu Jogano, Wataru Okumura, Hiroyuki Sato, Hitomi Matsui, Tsubasa Takagi, Nobuaki Okumura, Toshifumi Takao, Takashi Tonozuka, and Atsushi Nishikawa
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Jaw1, a tail-anchored protein with 39 carboxyl (C)-terminal amino acids, is oriented to the lumen of the endoplasmic reticulum and outer nuclear membrane. We previously reported that Jaw1, as a member of the KASH protein family, plays a role in maintaining nuclear shape via its C-terminal region. Furthermore, we recently reported that Jaw1 functions as an augmentative effector of Ca2+release from the endoplasmic reticulum by interacting with the inositol 1,4,5-trisphosphate receptors (IP3Rs). Intriguingly, the C-terminal region is partially cleaved, meaning that Jaw1 exists in the cell in at least two forms: uncleaved and cleaved. However, the mechanism of the cleavage event and its physiological significance remain to be determined. In this study, we demonstrate that the C-terminal region of Jaw1 is cleaved after its insertion by the signal peptidase complex (SPC). Particularly, our results indicate that the SPC with the catalytic subunit SEC11A, but not SEC11C, specifically cleaves Jaw1. Furthermore, using a mutant with a deficit in the cleavage event, we demonstrate that the cleavage event enhances the augmentative effect of Jaw1 on the Ca2+release ability of IP3Rs.Summary statementThe C-terminal region of Jaw1, a tail-anchored protein, is cleaved by signal peptidase complex and this cleavage event enhances the augmentative effect of Jaw1 on the Ca2+release activity of inositol 1,4,5-trisphosphate receptors
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- 2022
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15. Carnosine dipeptidase II (CNDP2) protects cells under cysteine insufficiency by hydrolyzing glutathione-related peptides
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Sho Kobayashi, Jia Han, Sohsuke Yamada, Junichi Fujii, Keita Nagaoka, Hideyo Sato, Nobuaki Okumura, Toshifumi Takao, Hiroyuki Konno, and Takujiro Homma
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Dipeptidases ,Kidney ,Carnosine ,Glutathione ,Oxidative phosphorylation ,Fibroblasts ,Biochemistry ,Embryonic stem cell ,Molecular biology ,Mice ,chemistry.chemical_compound ,Cytosol ,medicine.anatomical_structure ,chemistry ,Physiology (medical) ,Extracellular ,medicine ,Animals ,Macrophage ,Cysteine - Abstract
The knockout (KO) of the cystine transporter xCT causes ferroptosis, a type of iron-dependent necrotic cell death, in mouse embryonic fibroblasts, but this does not occur in macrophages. In this study, we explored the gene that supports cell survival under a xCT deficiency using a proteomics approach. Analysis of macrophage-derived peptides that were tagged with iTRAQ by liquid chromatography-mass spectrometry revealed a robust elevation in the levels of carnosine dipeptidase II (CNDP2) in xCT KO macrophages. The elevation in the CNDP2 protein levels was confirmed by immunoblot analyses and this elevation was accompanied by an increase in hydrolytic activity towards cysteinylglycine, the intermediate degradation product of glutathione after the removal of the γ-glutamyl group, in xCT KO macrophages. Supplementation of the cystine-free media of Hepa1-6 cells with glutathione or cysteinylglycine extended their survival, whereas the inclusion of bestatin, an inhibitor of CNDP2, counteracted the effects of these compounds. We established CNDP2 KO mice by means of the CRISPR/Cas9 system and found a decrease in dipeptidase activity in the liver, kidney, and brain. An acetaminophen overdose (350 mg/kg) showed not only aggravated hepatic damage but also renal injury in the CNDP2 KO mice, which was not evident in the wild-type mice that were receiving the same dose. The aggravated renal damage in the CNDP2 KO mice was consistent with the presence of abundant levels of CNDP2 in the kidney, the organ prone to developing ferroptosis. These collective data imply that cytosolic CNDP2, in conjugation with the removal of the γ-glutamyl group, recruits Cys from extracellular GSH and supports redox homeostasis of cells, particularly in epithelial cells of proximal tubules that are continuously exposed to oxidative insult from metabolic wastes that are produced in the body.
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- 2021
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16. Royal jelly maintains epidermal stem cell properties by repressing senescence
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Mariko Moriyama, Yuko Miyake, Tomomi Degawa, Nobuaki Okumura, and Hiroyuki Moriyama
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Royal jelly (RJ), a natural product secreted by honeybees, is used in various topical products for skincare and aids in maintaining cutaneous homeostasis. However, the mechanism underlying the effect of RJ on the skin has not yet been fully explored. Our previous data indicated that the epidermal equivalents become thicker and contain more p63-expressing proliferative cells after the addition of RJ to the medium. Therefore, we examined the effect of RJ on the proliferative ability of human primary epidermal keratinocytes (HPEKs) in a two-dimensional culture here. We observed only a slight increase in the proliferation of cells with the addition of RJ, suggesting that it is not actively involved in the proliferation of HPEKs. However, population doubling was enhanced in the RJ-treated group in the long-term culture experiment, indicating that RJ inhibits senescence. Additionally, RJ suppressed cellular senescence by regulating the expression levels of ΔNp63, p16, and p21. These results were further confirmed by the presence of major fatty acids, such as 10-hydroxy-2-decenoic acid, in RJ. Overall, our data indicate that RJ can maintain epidermal stem cell properties by repressing senescence.
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- 2022
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17. Effect of facial application of essence containing royal jelly extract on stratum corneum moisture content: A placebo-controlled, double-blind, parallel-group study
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Yuka Maeda, Chizuru Fujikura, Takashi Asama, Masayuki Yagi, Nobuaki Okumura, Ayanori Yamaki, Akio Ohkuma, and Kayoko Numano
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Dermatology - Abstract
To evaluate the moisturizing function and other effects of royal jelly extract on the skin. The effects of applying an essence containing royal jelly extract on the skin of healthy Japanese males and females were examined.Thirty-five healthy Japanese men and women who were aware of their skin dryness applied an essence containing royal jelly extract or placebo for 4 weeks using the split-face method in a placebo-controlled, double-blind, parallel comparative study. The stratum corneum water content, transepidermal water evaporation, pigmentation, pores, and redness were evaluated.The stratum corneum water content significantly increased by the application of essence containing royal jelly extract to the cheeks for 4 weeks compared with placebo.The application of an essence containing royal jelly extract significantly improved the moisture content of the stratum corneum of the cheeks, confirming the improvement in the moisturizing function of the royal jelly extract. Furthermore, no adverse events were observed at the application site during the application period, and the test products and royal jelly extract contained in the test product were considered highly safe.
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- 2022
18. Royal Jelly Protects against Epidermal Stress through Upregulation of the NQO1 Expression
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Tomomi Degawa, Hiroyuki Moriyama, Takashi Ito, Nobuaki Okumura, and Mariko Moriyama
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Keratinocytes ,food.ingredient ,QH301-705.5 ,keratinocyte ,medicine.disease_cause ,royal jelly ,fatty acids ,Antioxidants ,Article ,Catalysis ,Skin Aging ,NAD(P)H quinone dehydrogenase 1 (NQO1) ,Fatty Acids, Monounsaturated ,Inorganic Chemistry ,Apitherapy ,chemistry.chemical_compound ,food ,Downregulation and upregulation ,Menadione ,Royal jelly ,NAD(P)H Dehydrogenase (Quinone) ,medicine ,Animals ,Humans ,Physical and Theoretical Chemistry ,Biology (General) ,Molecular Biology ,QD1-999 ,Cells, Cultured ,Spectroscopy ,Skin ,anti-oxidant ,integumentary system ,Organic Chemistry ,General Medicine ,Bees ,Molecular biology ,Up-Regulation ,Computer Science Applications ,Oxidative Stress ,Chemistry ,medicine.anatomical_structure ,chemistry ,NAD+ kinase ,Epidermis ,Keratinocyte ,Oxidative stress - Abstract
Royal jelly (RJ) is secreted by honeybees and has been used as an apitherapy to obtain healthy skin since ancient times. However, the mechanism of the protective effects of RJ against skin aging and skin diseases caused by skin stress and its components have not been clarified. In this study, we attempted to understand the effect of RJ on epidermal function and observed that NAD(P)H quinone dehydrogenase 1 (NQO1) is significantly induced by RJ in keratinocytes. The expression of NQO1 was also increased in the 3D epidermal skin model. NQO1 is involved in antioxidation and detoxification metabolism, and we found that RJ protects against the epidermal stress caused by UVB and menadione through the upregulation of NQO1. We identified 10-hydroxy-2-decenoic acid (10H2DA), a major fatty acid in RJ, as an active compound in this reaction as it induced the expression of NQO1 and protected the skin against oxidative stress. We demonstrated that the protective effect of RJ against epidermal stress is mediated through the upregulation of NQO1 by 10H2DA.
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- 2021
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19. Cleavage of the Jaw1 C-terminal region enhances its augmentative effect on the Ca2+ release via IP3 receptors.
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Takuma Kozono, Chifuyu Jogano, Wataru Okumura, Hiroyuki Sato, Hitomi Matsui, Tsubasa Takagi, Nobuaki Okumura, Toshifumi Takao, Takashi Tonozuka, and Atsushi Nishikawa
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NUCLEAR membranes ,NUCLEAR shapes ,ENDOPLASMIC reticulum ,PEPTIDASE ,AMINO acids ,INOSITOL - Abstract
Jaw1 (also known as IRAG2), a tail-anchored protein with 39 carboxyl (C)-terminal amino acids, is oriented to the lumen of the endoplasmic reticulum and outer nuclear membrane. We previously reported that Jaw1, as a member of the KASH protein family, plays a role in maintaining nuclear shape via its C-terminal region. Furthermore, we recently reported that Jaw1 functions as an augmentative effector of Ca
2+ release from the endoplasmic reticulum by interacting with the inositol 1,4,5-trisphosphate receptors (IP3Rs). Intriguingly, the C-terminal region is partially cleaved, meaning that Jaw1 exists in the cell in at least two forms -- uncleaved and cleaved. However, the mechanism of the cleavage event and its physiological significance remain to be determined. In this study, we demonstrate that the C-terminal region of Jaw1 is cleaved after its insertion by the signal peptidase complex (SPC). Particularly, our results indicate that the SPC with the catalytic subunit SEC11A, but not SEC11C, specifically cleaves Jaw1. Furthermore, using a mutant with a defect in the cleavage event, we demonstrate that the cleavage event enhances the augmentative effect of Jaw1 on the Ca2+ release ability of IP3Rs. [ABSTRACT FROM AUTHOR]- Published
- 2023
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20. A case report on prosthodontic reconstruction for open-bite resulting from mandibular condylar tumor resection
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Atsushi Kawamura, Mana Hasegawa, Yoshiaki Arai, Sayaka Hara, Maki Komatsu, Ritsuo Takagi, Nobuaki Okumura, and Noritaka Fujii
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Open bite ,Orthodontics ,business.industry ,Tumor resection ,Medicine ,General Medicine ,business ,Condyle - Published
- 2020
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21. Cognitive Improvement and Safety Assessment of a Dietary Supplement Containing Propolis Extract in Elderly Japanese: A Placebo-Controlled, Randomized, Parallel-Group, Double-Blind Human Clinical Study
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Akio Ohkuma, Nobuaki Okumura, Takashi Asama, Toshihito Hiraoka, Ayanori Yamaki, and Katsuya Urakami
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medicine.medical_specialty ,Article Subject ,Subgroup analysis ,Urine ,Placebo ,Gastroenterology ,03 medical and health sciences ,chemistry.chemical_compound ,Other systems of medicine ,0302 clinical medicine ,Internal medicine ,Medicine ,030304 developmental biology ,0303 health sciences ,Creatinine ,business.industry ,Propolis ,Complementary and alternative medicine ,chemistry ,Uric acid ,Verbal memory ,business ,Neurocognitive ,030217 neurology & neurosurgery ,RZ201-999 ,Research Article - Abstract
Objectives. This study aimed to evaluate the effect of propolis on cognitive function in elderly Japanese with a placebo-controlled design. Material and Methods. This study was performed on 79 elderly Japanese. Participants orally received either a placebo or dietary supplement containing propolis extract for 24 weeks. Cognitive function assessed by Cognitrax and various blood or urine markers were measured at pre- and postadministration. Results and Conclusion. Eligible data from 68 subjects (placebo: 33, propolis: 35) who completed the study were analyzed. Compared to the placebo group, the propolis group showed significant improvement in verbal memory in Cognitrax ( P = 0.028 ). Total cholesterol, LDL cholesterol, urea nitrogen, creatinine, and uric acid were significantly improved in the propolis group compared to the placebo group ( P = 0.011 , P = 0.004 , P = 0.048 , P = 0.045 , and P = 0.005 , respectively). However, urea nitrogen, creatinine, and uric acid fluctuated within the normal level. Furthermore, a subgroup analysis was performed on those with higher than 100 of the standardized score of the neurocognitive index indicated by the overall Cognitrax score. Significant improvements in the propolis group compared to placebo were confirmed in verbal memory ( P = 0.007 ) and processing speed as indications for information processing ability, complex attention, and concentration ( P = 0.029 ). No side effects were observed in any of the groups. This study demonstrates that propolis is effective in improving cognitive functions such as memory, information processing, complex attention, and concentration in elderly Japanese.
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- 2021
22. Identification of the ternary complex of ribonuclease HI:RNA/DNA hybrid:metal ions by ESI mass spectrometry
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Shigenori Kanaya, Nobuaki Okumura, Tomoshige Ando, Toshifumi Takao, Nujarin Jongruja, and Kosuke Morikawa
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0301 basic medicine ,Spectrometry, Mass, Electrospray Ionization ,RNase P ,Stereochemistry ,Cations, Divalent ,Electrospray ionization ,Metal ions in aqueous solution ,Endoribonuclease ,Ribonuclease H ,Biochemistry ,RF, radio-frequency ,Catalysis ,Substrate Specificity ,03 medical and health sciences ,chemistry.chemical_compound ,metal ion–protein interaction ,ESI-MS, electrospray ionization–mass spectrometry ,Endoribonucleases ,Escherichia coli ,Magnesium ,mass spectrometry (MS) ,Ribonuclease ,HIV-1, human immunodeficiency virus type-1 ,Molecular Biology ,Ternary complex ,Ions ,Manganese ,Binding Sites ,030102 biochemistry & molecular biology ,biology ,Escherichia coli Proteins ,Hydrolysis ,zinc ,EDTA, ethylenediaminetetraacetate ,TEA, Triethylamine ,Substrate (chemistry) ,Cell Biology ,DNA ,Kinetics ,030104 developmental biology ,chemistry ,DTT, dithiothreitol ,HPLC, high-performance liquid chromatography ,RT, reverse transcriptase ,biology.protein ,RNA ,ribonuclease ,Research Article - Abstract
Ribonuclease HI, an endoribonuclease, catalyzes the hydrolysis of the RNA strand of an RNA/DNA hybrid and requires divalent metal ions for its enzymatic activity. However, the mechanistic details of the activity of ribonuclease HI and its interaction with divalent metal ions remain unclear. In this study, we performed real-time monitoring of the enzyme–substrate complex in the presence of divalent metal ions (Mn2+ or Zn2+) using electrospray ionization–mass spectrometry (ESI-MS). The findings provide clear evidence that the enzymatic activity of the ternary complex requires the binding of two divalent metal ions. The Zn2+ ions bind to both the enzyme itself and the enzyme:substrate complex more strongly than Mn2+ ions, and gives, in part, the ternary complex, [RNase HI:nicked RNA/DNA hybrid:2Zn2+], suggesting that the ternary complex is retained, even after the hydrolysis of the substrate. The collective results presented herein shed new light on the essential role of divalent metal ions in the activity of ribonuclease HI and demonstrate how Zn2+ ions confer inhibitory properties on the activity of this enzyme by forming a highly stable complex with the substrate.
- Published
- 2020
23. A case report on the reconstruction of occlusal function with a dental implant prosthesis involving a potential risk for non-vertical stop
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Nobuaki Okumura
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Orthodontics ,Potential risk ,business.industry ,medicine.medical_treatment ,media_common.quotation_subject ,medicine ,General Medicine ,Dental implant ,Function (engineering) ,business ,Prosthesis ,media_common - Published
- 2019
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24. Cover Image
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Yang Wang, Etsuko Nakajima, Yoshihito Okamura, Danqing Wang, Nobuaki Okumura, and Toshifumi Takao
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Organic Chemistry ,Spectroscopy ,Analytical Chemistry - Published
- 2020
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25. Metastable decomposition at the peptide C-terminus: Possible use in protein identification
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Yoshihito Okamura, Yang Wang, Nobuaki Okumura, Toshifumi Takao, Etsuko Nakajima, and Danqing Wang
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Stereochemistry ,medicine.medical_treatment ,Peptide ,Mass spectrometry ,01 natural sciences ,Analytical Chemistry ,Ion ,Fragmentation (mass spectrometry) ,Tandem Mass Spectrometry ,medicine ,Peptide bond ,Animals ,Humans ,Horses ,Amino Acids ,Spectroscopy ,chemistry.chemical_classification ,Protease ,Chemistry ,C-terminus ,010401 analytical chemistry ,Organic Chemistry ,Proteins ,Peptide Fragments ,0104 chemical sciences ,Amino acid ,HEK293 Cells ,Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization ,Cattle - Abstract
Rationale The b n-1 ion of a peptide, as well as a [b n-1 + 18] ion, can be observed not only as normal product ions, but also as prominent metastable ions in a reflectron-embedded matrix-assisted laser desorption ionization time-of-flight spectrometer. The m/z values for the peaks are slightly shifted compared with the ordinary product ions and appear as relatively broad peaks, which permits them to be discriminated from other ions. Methods A standard protein mixture and gel-derived proteins digested with LysN protease, which cleaves peptide linkages in proteins at the N-terminal side of Lys residues, were examined. The collected data were used for protein identification using in-house software, iD-plus (http://coco.protein.osaka-u.ac.jp/id-plus/), which was developed for searching for proteins in the peptide database, based on enzyme specificity (N-terminal Lys in this study), peptide masses and C-terminal amino acids. Results The b n-1 as well as [b n-1 + 18] ions were observed as broad ion peaks for all of the peptides (86 peptides) examined in this study. In silico calculations using the database of LysN digested peptides (11 969 470), created from 553 941 protein sequences (SwissProt: 2017_03), indicate that the use of no less than four peptides permits a protein to be identified without the need of any probability-based scoring. Conclusions The preference for b n-1 ion formation is probably due to the higher propensity of the C-terminal peptide bond to be cleaved than other internal bonds. The fact that such C-terminal fragmentation takes place for most of the peptides examined suggests that the use of an N-terminal specific enzyme would allow the C-terminal amino acids to be more reliably read out than other internal sequences, information that could be efficiently used for protein identification.
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- 2019
26. Daily Oral Administration of Protease-Treated Royal Jelly Protects Against Denervation-Induced Skeletal Muscle Atrophy
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Toshiyuki Tsujisawa, Aki Miyawaki, Takuma Matsubara, Tatsuo Kawamoto, Hideto Okamoto, Naoya Nakai, Tomohiko Shirakawa, Thira Rojasawasthien, Kazumasa Morikawa, Ayako Washio, Akino Goto, Asako Inoue, Nobuaki Okumura, and Shoichiro Kokabu
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0301 basic medicine ,Sarcopenia ,medicine.medical_specialty ,food.ingredient ,Administration, Oral ,lcsh:TX341-641 ,Muscle Development ,royal jelly ,Article ,Receptor, IGF Type 1 ,Fatty Acids, Monounsaturated ,03 medical and health sciences ,0302 clinical medicine ,food ,Atrophy ,atrophy ,Internal medicine ,Royal jelly ,medicine ,Animals ,Myocyte ,Insulin-Like Growth Factor I ,skeletal muscle ,Muscle, Skeletal ,Cells, Cultured ,Denervation ,Nutrition and Dietetics ,denervation ,Myogenesis ,business.industry ,Fatty Acids ,myoblasts ,Skeletal muscle ,medicine.disease ,Muscle atrophy ,Mice, Inbred C57BL ,Muscular Atrophy ,030104 developmental biology ,Endocrinology ,medicine.anatomical_structure ,medicine.symptom ,business ,Decanoic Acids ,lcsh:Nutrition. Foods and food supply ,030217 neurology & neurosurgery ,Peptide Hydrolases ,Food Science - Abstract
Honeybees produce royal jelly (RJ) from their cephalic glands. Royal jelly is a source of nutrition for the queen honey bee throughout its lifespan and is also involved in fertility and longevity. Royal jelly has long been considered beneficial to human health. We recently observed that RJ delayed impairment of motor function during aging, affecting muscle fiber size. However, how RJ affects skeletal muscle metabolism and the functional component of RJ is as of yet unidentified. We demonstrate that feeding mice with RJ daily prevents a decrease in myofiber size following denervation without affecting total muscle weight. RJ did not affect atrophy-related genes but stimulated the expression of myogenesis-related genes, including IGF-1 and IGF receptor. Trans-10-hydroxy-2-decenoic acid (10H2DA) and 10-hydroxydecanoic acid (10HDAA), two major fatty acids contained in RJ. After ingestion, 10H2DA and 10HDAA are metabolized into 2-decenedioic acid (2DA) and sebacic acid (SA) respectively. We found that 10H2DA, 10HDAA, 2DA, and SA all regulated myogenesis of C2C12 cells, murine myoblast cells. These novel findings may be useful for potential preventative and therapeutic applications for muscle atrophy disease included in Sarcopenia, an age-related decline in skeletal muscle mass and strength.
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- 2020
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27. Royal Jelly Delays Motor Functional Impairment During Aging in Genetically Heterogeneous Male Mice
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Kenji Watanabe, Toshihiko Toda, Takahiko Shimizu, Yusuke Ozawa, Nobuaki Okumura, Tomoki Tatefuji, Ken Hashimoto, and Tomoki Ikuta
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Male ,0301 basic medicine ,muscle atrophy ,medicine.medical_specialty ,Functional impairment ,food.ingredient ,Longevity ,genetically heterogeneous mice ,Male mice ,lcsh:TX341-641 ,Normal aging ,Motor Activity ,Motor function ,royal jelly ,Article ,Genetic Heterogeneity ,03 medical and health sciences ,Grip strength ,Sex Factors ,food ,muscle stemness ,Internal medicine ,Royal jelly ,medicine ,Animals ,Muscle Strength ,Muscle, Skeletal ,Mice, Inbred BALB C ,Mice, Inbred C3H ,Nutrition and Dietetics ,Genetic heterogeneity ,business.industry ,Fatty Acids ,aging ,motor function ,Age Factors ,Muscle atrophy ,Mice, Inbred C57BL ,Muscular Atrophy ,030104 developmental biology ,Endocrinology ,Gene Expression Regulation ,Motor Skills ,Dietary Supplements ,medicine.symptom ,business ,lcsh:Nutrition. Foods and food supply ,Food Science - Abstract
Aging is associated with motor disorders that decrease the quality of life (QOL). Royal jelly (RJ), used as a dietary supplement, has shown various health benefits and, therefore, it has the potential to improve the QOL during aging. We have previously developed protease enzyme-treated RJ to avoid the anaphylactic response induced by RJ supplementation. However, the effects of a lifelong treatment with RJ on normal aging have not been fully clarified. In this study, we investigated the effects of enzyme-untreated RJ (NRJ) and enzyme-treated RJ (ERJ) on the aging process focusing on motor functions, by using a genetically heterogeneous (HET) mouse model experimentally endowed with genetic diversity. We performed four different physical performance tests (grip strength, wire hang, horizontal bar, and rotarod). We showed that the age-related impairment of the motor functions was significantly delayed in RJ-treated mice. Both NRJ and ERJ were similarly effective against these types of aging-associated declines. Histological analyses revealed that the RJ treatment affected the muscle fiber size at an advanced age. We also demonstrated that age-related changes in muscle satellite cell markers and catabolic genes were affected in RJ-treated mice. These results suggest that non-protein components of RJ improved the motor function in aging mice. These findings indicate that RJ has the potential to change the QOL during aging by regulating the motor function.
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- 2018
28. Heterosis extends the reproductive ability in aged female mice†
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Naoki Okamoto, Kenji Watanabe, Ikko Kawashima, Nobuaki Okumura, Yusuke Ozawa, Kazuhiro Kawamura, Takahiko Shimizu, Shuichi Shibuya, Toshihiko Toda, and Yorino Sato
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0301 basic medicine ,Aging ,Heterozygote ,animal structures ,Offspring ,Heterosis ,medicine.medical_treatment ,media_common.quotation_subject ,Fertility ,Ovary ,Mice, Transgenic ,Biology ,Andrology ,03 medical and health sciences ,Mice ,0302 clinical medicine ,Human fertilization ,Follicular phase ,medicine ,Hybrid Vigor ,Animals ,Crosses, Genetic ,media_common ,Mice, Inbred BALB C ,Mice, Inbred C3H ,030219 obstetrics & reproductive medicine ,In vitro fertilisation ,Reproduction ,Cell Biology ,General Medicine ,Mice, Inbred C57BL ,030104 developmental biology ,medicine.anatomical_structure ,Reproductive Medicine ,Mice, Inbred DBA ,Female ,Maternal Age - Abstract
Heterosis is the beneficial effect of genetical heterogeneity in animals and plants. Although heterosis induces changes in the cells and individual abilities, few reports have described the effect of heterosis on the female reproductive ability during aging. In this study, we investigated the reproductive capability of genetically heterogeneous (HET) mice established by the four-way crossing of C57BL/6N, BALB/c, C3H/He, and DBA/2. We found the HET females naturally and repeatedly produced offspring, even in old age (14-18 months of age). We also found that HET females showed a significantly enlarged body and organ sizes in both youth and old age. In histological analyses, the numbers of primordial follicles, primary follicles, secondary follicles, and corpora lutea were significantly increased in the old ovaries of HET females compared with those in inbred C57BL/6 mice of the same age. In vitro fertilization experiments revealed that aged HET oocytes showed identical rates of fertilization, early development, and birth compared to those of young and old C57BL/6 oocytes. We further found the significantly increased expression of sirtuin genes concomitant with the up-regulation of R-spondin2 in old HET ovaries. These results confirm the novel phenotype, characterized by fertility extension and follicular retention due to heterosis, in old HET females. The HET female will be a valuable model for clarifying the mechanism underlying the effect of heterosis in the field of reproduction.
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- 2018
29. Evidence for an essential role of intradimer interaction in catalytic function of carnosine dipeptidase II using electrospray-ionization mass spectrometry
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Toshifumi Takao, Nobuaki Okumura, and Jun Tamura
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0301 basic medicine ,Dipeptidase ,Metallopeptidase ,biology ,Stereochemistry ,Electrospray ionization ,Dimer ,Mutant ,Active site ,Carnosine ,Biochemistry ,03 medical and health sciences ,chemistry.chemical_compound ,Residue (chemistry) ,030104 developmental biology ,chemistry ,biology.protein ,Molecular Biology - Abstract
Carnosine dipeptidase II (CN2/CNDP2) is an M20 family metallopeptidase that hydrolyses various dipeptides including β-alanyl-L-histidine (carnosine). Crystallographic analysis showed that CN2 monomer is composed of one catalytic and one dimerization domains, and likely to form homodimer. In this crystal, H228 residue of the dimerization domain interacts with the substrate analogue bestatin on the active site of the dimer counterpart, indicating that H228 is involved in enzymatic reaction. In the present study, the role of intradimer interaction of CN2 in its catalytic activity was investigated using electrospray-ionization time-of-flight mass spectrometry (ESI-TOF MS). First, a dimer interface mutant I319K was prepared and shown to be present as a folded monomer in solution as examined by using ESI-TOF MS. Since the mutant was inactive, it was suggested that dimer formation is essential to its enzymatic activity. Next, we prepared H228A and D132A mutant proteins with different N-terminal extended sequences, which enabled us to monitor dimer exchange reaction by ESI-TOF MS. The D132A mutant is a metal ligand mutant and also inactive. But the activity was partially recovered time-dependently when H228A and D132A mutant proteins were incubated together. In parallel, H228A/D132A heterodimer was formed as detected by ESI-TOF MS, indicating that interaction of a catalytic center with H228 residue of the other subunit is essential to the enzymatic reaction. These results provide evidence showing that intradimer interaction of H228 with the reaction center of the dimer counterpart is essential to the enzymatic activity of CN2.
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- 2015
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30. Phospholipid methylation controls Atg32-mediated mitophagy and Atg8 recycling
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Machiko Sakoh-Nakatogawa, Hiromi Kirisako, Ayako Hashimoto, Akinori Eiyama, Nobuaki Okumura, Yoshinori Ohsumi, Kaori Sakakibara, Eri Asai, Chika Kondo-Kakuta, Koji Okamoto, Motohiro Tani, Toshifumi Takao, Sho W. Suzuki, Osamu Kuge, Hitoshi Nakatogawa, Sachiyo Nagumo, and Noriko Kondo-Okamoto
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Transcriptional Activation ,Methyltransferase ,Saccharomyces cerevisiae Proteins ,ATG8 ,Autophagy-Related Proteins ,Receptors, Cytoplasmic and Nuclear ,Oxidative phosphorylation ,Saccharomyces cerevisiae ,Mitochondrion ,Biology ,Methylation ,General Biochemistry, Genetics and Molecular Biology ,chemistry.chemical_compound ,Gene Expression Regulation, Fungal ,Mitophagy ,Humans ,Molecular Biology ,Phospholipids ,Phosphatidylethanolamine ,General Immunology and Microbiology ,General Neuroscience ,Autophagy ,Autophagy-Related Protein 8 Family ,Articles ,Cell biology ,Mitochondria ,Protein Transport ,chemistry ,Biochemistry ,Microtubule-Associated Proteins - Abstract
Degradation of mitochondria via selective autophagy, termed mitophagy, contributes to mitochondrial quality and quantity control whose defects have been implicated in oxidative phosphorylation deficiency, aberrant cell differentiation, and neurodegeneration. How mitophagy is regulated in response to cellular physiology remains obscure. Here, we show that mitophagy in yeast is linked to the phospholipid biosynthesis pathway for conversion of phosphatidylethanolamine to phosphatidylcholine by the two methyltransferases Cho2 and Opi3. Under mitophagy-inducing conditions, cells lacking Opi3 exhibit retardation of Cho2 repression that causes an anomalous increase in glutathione levels, leading to suppression of Atg32, a mitochondria-anchored protein essential for mitophagy. In addition, loss of Opi3 results in accumulation of phosphatidylmonomethylethanolamine (PMME) and, surprisingly, generation of Atg8-PMME, a mitophagy-incompetent lipid conjugate of the autophagy-related ubiquitin-like modifier. Amelioration of Atg32 expression and attenuation of Atg8-PMME conjugation markedly rescue mitophagy in opi3-null cells. We propose that proper regulation of phospholipid methylation is crucial for Atg32-mediated mitophagy.
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- 2015
31. Negative regulation of hepatitis B virus replication by forkhead box protein A in human hepatoma cells
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Masashi Mizokami, Masaya Sugiyama, Hiromichi Dansako, Masanori Ikeda, Nobuyuki Kato, Nobuaki Okumura, and Shinya Satoh
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DNA Replication ,Hepatocyte Nuclear Factor 3-alpha ,Hepatitis B virus ,Carcinoma, Hepatocellular ,animal structures ,Biophysics ,Biology ,Virus Replication ,medicine.disease_cause ,Biochemistry ,Hepatitis B virus PRE beta ,HNF3 ,Structural Biology ,Transcription (biology) ,Cell Line, Tumor ,Genetics ,medicine ,Humans ,Molecular Biology ,Liver Neoplasms ,fungi ,DNA replication ,virus diseases ,Cell Biology ,Virology ,Molecular biology ,digestive system diseases ,Neoplasm Proteins ,Hepatocyte Nuclear Factor 4 ,Viral replication ,FOXA3 ,DNA, Viral ,embryonic structures ,Hepatocyte Nuclear Factor 3-beta ,Hepatitis B virus replication ,FOXA2 ,FOXA1 - Abstract
Hepatitis B virus (HBV) replication is controlled by liver-enriched transcriptional factors, including forkhead box protein A (FOXA) members. Here, we found that FOXA members are directly and indirectly involved in HBV replication in human hepatic cells. HBV replication was elevated in HuH-7 treated with individual FOXA members-specific siRNA. Reciprocally, the downregulation of HBV replication was observed in FOXA-induced HuH-7. However, the mechanism of downregulation is different among FOXA members at the level of HBV RNA transcription, such as precore/pg RNA and 2.1kb RNA. In addition, FOXA1 and FOXA2 suppressed nuclear hormone receptors, such as HNF4α, that are related to HBV replication.
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- 2015
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32. The zinc form of carnosine dipeptidase 2 (CN2) has dipeptidase activity but its substrate specificity is different from that of the manganese form
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Toshifumi Takao and Nobuaki Okumura
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0301 basic medicine ,Dipeptidases ,Metallopeptidase ,Biophysics ,Carnosine ,chemistry.chemical_element ,Zinc ,Biochemistry ,Catalysis ,Substrate Specificity ,03 medical and health sciences ,chemistry.chemical_compound ,Hydrolysis ,Humans ,Molecular Biology ,chemistry.chemical_classification ,Manganese ,Dipeptide ,Binding Sites ,030102 biochemistry & molecular biology ,Cell Biology ,Dipeptides ,Enzyme Activation ,Cytosol ,030104 developmental biology ,Enzyme ,HEK293 Cells ,chemistry ,Dipeptidase 2 ,Protein Binding - Abstract
Carnosine dipeptidase II (CN2), a metallopeptidase present in the cytosol of various vertebrate tissues, catalyzes the hydrolysis of carnosine and several other dipeptides in the presence of Mn2+. Although the metal-binding center of mouse CN2 is also able to associate with Zn2+ in vitro, it was not known whether the zinc form of CN2 has any enzymatic activity. In the present study, we show that Zn2+ has a higher affinity for binding to CN2 than Mn2+, as evidenced by native mass spectrometry. The issue of whether the zinc form of CN2 has enzymatic activity was also examined using various dipeptides as substrates. The findings indicate that the zinc form of CN2 catalyzes the hydrolysis of several different dipeptides including Leu-His, Met-His and Ala-His at a reaction rate comparable to that for its manganese form. On the other hand, the zinc form of CN2 did not catalyze the hydrolysis of carnosine and several other dipeptides that are hydrolyzed by the manganese form of CN2. Substrate specificity was also examined in HEK293T cells expressing CN2, and the findings indicate that Leu-His, Met-His, but not carnosine, were hydrolyzed in the cell culture. These results suggest that the zinc form of CN2 is an active enzyme, but with a different substrate specificity from that of the manganese form.
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- 2017
33. Early detection of pancreatic ductal adenocarcinoma by measuring the abnormal urinary fragmentation ratios of kininogen
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Nobuhiro Matsumoto, Motoyasu Kan, Izumi Ohno, Masafumi Ikeda, Masamitsu Nakazato, Nobuaki Okumura, Shuichi Mitsunaga, Hironobu Tsubouchi, Shigehisa Yanagi, and Toshifumi Takao
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Kininogen ,medicine.medical_specialty ,Proteases ,endocrine system diseases ,Receiver operating characteristic ,business.industry ,Urinary system ,Cancer ,Hematology ,Urine ,Trypsin ,medicine.disease ,Gastroenterology ,digestive system diseases ,Oncology ,Internal medicine ,medicine ,Fragmentation (cell biology) ,business ,medicine.drug - Abstract
Background Intact kininogen (KNG), the precursor of kinin that originates from the liver, is fragmented by proteases. A recent research showed an increase in the serum levels of KNG fragments in cancer patients (pts), which were possibly produced by proteases in the tumor microenvironment. We hypothesized that urinary excretion of KNG fragments would also be elevated in pancreatic ductal adenocarcinoma (PDAC) pts. This study was conducted to investigate the diagnostic usefulness of urinary KNG fragment measurement by the multiple-reaction-monitoring technique (MRM). Methods Treatment-naive PDAC pts and healthy participants for whom pooled frozen urine specimens were available were enrolled in this study. Urine samples from resectable PDAC pts were collected prior to the surgery. The urinary proteins were digested with trypsin, and the resultant peptides were measured by MRM analysis; the degree of protein fragmentation was estimated by the ratio of the amount of a protein fragment to that of a constant region of the original protein. Fragments for which the fragmentation ratios were higher in resectable PDAC pts than in the healthy participants were defined as having abnormal protein fragments. The diagnostic capability of each abnormal protein fragment and CA19-9 for discriminating resectable PDAC pts from healthy participants was evaluated by receiver operating characteristic (ROC) curve analysis. Results A total of 19 pts with resectable PDAC (median age 73 years, male 74%) and 30 healthy participants (median age 34 years, male 40%) were analyzed. The fragmentation ratios for three fragments were found to be higher in the resectable PDAC pts than in the healthy participants, and these fragments were determined as abnormal protein fragments. The areas under the ROC curves were 0.73, 0.78 and 0.82, respectively (CA19-9: 0.82). Conclusion Measurement of the urinary fragmentation ratios of KNG enabled discrimination between resectable PDAC pts and healthy volunteers.
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- 2019
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34. Early detection of pancreatic ductal adenocarcinoma using abnormal urinary fragmentation ratio of a liver-originated protein
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Izumi Ohno, Hironobu Tsubouchi, Nobuaki Okumura, Shigehisa Yanagi, Nobuhiro Matsumoto, Shuichi Mitsunaga, Motoyasu Kan, Masamitsu Nakazato, Toshifumi Takao, and Masafumi Ikeda
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Cancer Research ,Proteases ,Pancreatic ductal adenocarcinoma ,endocrine system diseases ,Oncology ,business.industry ,Urinary system ,Cancer research ,Early detection ,Medicine ,Urine ,business ,digestive system diseases - Abstract
214 Background: Non PDAC tissue-originated proteins are cleaved by proteases derived from PDAC, which can result in abnormal cleavage patterns in the urine of PDAC patients. Urinary proteomic analysis for quantifying the ratios of the abnormal protein fragments to the non-fragmented protein levels in the urine may be useful to distinguish early PDAC from healthy controls. This proof-of-concept study was planned to determine the usefulness of measuring the protein fragments from non PDAC tissue-originated proteins in the urine using the multiple-reaction-monitoring technique (MRM) for discriminating resectable PDAC from healthy controls. Methods: Urinary proteins were digested with trypsin, and resultant peptides were measured by MRM analysis and the ratio of the level of each fragment to the non-fragmented protein level (fragmentation ratio) was calculated. Fragments for which the fragmentation ratios were higher in the PDAC group than those in the healthy group were defined as abnormal protein fragments. The diagnostic capability of each abnormal protein fragment for discriminating cases of PDAC from healthy controls was evaluated by receiver operating characteristic (ROC) curve analysis. Results: A total of 21 patients with resectable PDAC and 30 healthy control subjects were enrolled in this study. All the PDAC patients were treated by pancreatic resection. Urine samples for this study were collected prior to the surgery from the PDAC patients. The non PDAC tissue-originated protein was determined as a liver-originated protein. The fragmentation ratios for six fragments were found to be higher in the PDAC group as compared to those in the healthy control group, and these fragments were determined as abnormal protein fragments. ROC curve analysis was performed for each of the abnormal fragments to determine the areas under the curve (AUCs) for discriminating cases of PDAC from healthy controls. The best AUC was 0.81 (95% CI, 0.68-0.91). Conclusions: The urinary fragmentation ratios showed the ability to discriminate cases of resectable PDAC from a healthy control group; abnormal fragmentation ratios may be promising, noninvasively measurable biomarkers of early PDAC.
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- 2019
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35. Measurement of urinary kininogen (KNG) fragments as a noninvasive tool for early diagnosis of pancreatic cancer (PaCa)
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Nobuaki Okumura, Nobuhiro Matsumoto, Motoyasu Kan, Shigehisa Yanagi, Masamitsu Nakazato, Shuichi Mitsunaga, Toshifumi Takao, Izumi Ohno, Masafumi Ikeda, and Hironobu Tsubouchi
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Cancer Research ,Kininogen ,endocrine system diseases ,biology ,business.industry ,Urinary system ,biology.organism_classification ,medicine.disease ,Oncology ,Pancreatic cancer ,medicine ,Cancer research ,Overall survival ,Paca ,business - Abstract
209 Background: There is a clear need to identify a non-invasive biomarker for early diagnosis of PaCa, in order to improve the overall survival of PaCa patients. Secretion of large amounts of proteases is a hallmark of PaCa, which results in an abundance of protease-induced cleavage products being excreted in the urine. This has led to speculation that measurement of PaCa-specific fragments in the urine might be useful as a tool for discrimination between PaCa patients and healthy controls. Herein, we introduce urinary KNG fragments as a promising biomarker for early diagnosis of PaCa. Methods: Urine samples were collected from PaCa patients and healthy volunteers, with the written informed consent, from January 2014 to July 2016. Urinary protein tryptic fragments derived from protein C-termini were measured using isobaric tags (iTRAQ) for their relative quantitation, and the diagnostic ability of the urinary levels of these fragments was evaluated by receiver operating characteristic (ROC) curve analysis. The fragments which showed an area-under-the-curve (AUC) of over 0.8 were selected as candidate fragments for further validation by the multiple-reaction-monitoring technique (MRM) combined with high-speed liquid chromatography. The urinary level of each candidate fragment was quantified by MRM, and the diagnostic capability of each for discriminating PaCa patients from healthy controls was evaluated by ROC curve analysis. Results: Urine samples of 39 PaCa patients (7 resectable, 32 unresectable) and 42 healthy controls were examined by iTRAQ to find 12,783 fragments. ROC curve analysis was carried out to select two candidate fragments (fragments A, B), both of which turned out to be KNG cleavage products. The urinary levels of the two fragments were measured in 23 resectable PaCa, 118 unresectable PaCa patients, and 42 healthy volunteers using high-speed-LC-/MRM. The AUCs of serum CA19-9 and urinary levels of fragments A and B for discriminating patients of PaCa from healthy controls were 0.89, 0.81 and 0.70, respectively. Conclusions: Urinary KNG fragments showed favorable diagnostic capability and were considered as promising, noninvasively measurable biomarkers of PaCa.
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- 2019
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36. Metastable decomposition at the peptide C-terminus: Possible use in protein identification.
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Yang Wang, Etsuko Nakajima, Yoshihito Okamura, Danqing Wang, Nobuaki Okumura, and Toshifumi Takao
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PROTEOMICS ,ENZYME specificity ,DAUGHTER ions ,METASTABLE ions ,AMINO acid sequence - Abstract
Rationale: The b
n−1 ion of a peptide, as well as a [bn−1 + 18] ion, can be observed not only as normal product ions, but also as prominent metastable ions in a reflectronembedded matrix-assisted laser desorption ionization time-of-flight spectrometer. The m/z values for the peaks are slightly shifted compared with the ordinary product ions and appear as relatively broad peaks, which permits them to be discriminated from other ions. Methods: A standard protein mixture and gel-derived proteins digested with LysN protease, which cleaves peptide linkages in proteins at the N-terminal side of Lys residues, were examined. The collected data were used for protein identification using in-house software, iD-plus (http://coco.protein.osaka-u.ac.jp/id-plus/), which was developed for searching for proteins in the peptide database, based on enzyme specificity (N-terminal Lys in this study), peptide masses and C-terminal amino acids. Results: The bn−1 as well as [bn−1 + 18] ions were observed as broad ion peaks for all of the peptides (86 peptides) examined in this study. In silico calculations using the database of LysN digested peptides (11 969 470), created from 553 941 protein sequences (SwissProt: 2017_03), indicate that the use of no less than four peptides permits a protein to be identified without the need of any probability-based scoring. Conclusions: The preference for bn−1 ion formation is probably due to the higher propensity of the C-terminal peptide bond to be cleaved than other internal bonds. The fact that such C-terminal fragmentation takes place for most of the peptides examined suggests that the use of an N-terminal specific enzyme would allow the C-terminal amino acids to be more reliably read out than other internal sequences, information that could be efficiently used for protein identification. [ABSTRACT FROM AUTHOR]- Published
- 2020
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37. Identification of Cargo Proteins Specific for Importin-β with Importin-α Applying a Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC)-based in Vitro Transport System*
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Makoto Kimura, Nobuaki Okumura, Naoko Imamoto, Toshifumi Takao, and Shingo Kose
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alpha Karyopherins ,macromolecular substances ,Cell Biology ,Importin ,Karyopherins ,Biology ,beta Karyopherins ,Proteomics ,environment and public health ,Biochemistry ,Mass Spectrometry ,Protein–protein interaction ,Protein Transport ,Nucleocytoplasmic Transport ,Isotope Labeling ,Stable isotope labeling by amino acids in cell culture ,Humans ,Nuclear pore ,Nuclear transport ,Nuclear protein ,Molecular Biology ,HeLa Cells - Abstract
The human importin (Imp)-β family consists of 21 nucleocytoplasmic transport carrier proteins, which transport thousands of proteins (cargoes) across the nuclear envelope through nuclear pores in specific directions. To understand the nucleocytoplasmic transport in a physiological context, the specificity of cargoes for their cognate carriers should be determined; however, only a limited number of nuclear proteins have been linked to specific carriers. To address this biological question, we recently developed a novel method to identify carrier-specific cargoes. This method includes the following three steps: (i) the cells are labeled by stable isotope labeling by amino acids in cell culture (SILAC); (ii) the labeled cells are permeabilized, and proteins in the unlabeled cell extracts are transported into the nuclei of the permeabilized cells by a particular carrier; and (iii) the proteins in the nuclei are quantitatively identified by LC-MS/MS. The effectiveness of this method was demonstrated by the identification of transportin (Trn)-specific cargoes. Here, we applied this method to identify cargo proteins specific for Imp-β, which is a predominant carrier that exclusively utilizes Imp-α as an adapter for cargo binding. We identified candidate cargoes, which included previously reported and potentially novel Imp-β cargoes. In in vitro binding assays, most of the candidate cargoes bound to Imp-β in one of three binding modes: directly, via Imp-α, or via other cargoes. Thus, our method is effective for identifying a variety of Imp-β cargoes. The identified Imp-β and Trn cargoes were compared, ensuring the carrier specificity of the method and illustrating the complexity of these transport pathways. Background: A limited number of cargoes specific for importin-β family nucleocytoplasmic transport carriers have been reported. We have developed a stable isotope labeling by amino acids in cell culture (SILAC)-based transport method to identify specific cargo. Results: Candidate importin-β (with or without importin-α) cargoes were identified by our method and corroborated with binding assays. Conclusion: New importin-β-specific cargoes were identified. Significance: Our method has the potential to identify cargoes specific for other carriers.
- Published
- 2013
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38. Involvement of Brain-Enriched Guanylate Kinase-Associated Protein (BEGAIN) in Chronic Pain after Peripheral Nerve Injury
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Tadashi Yamamoto, Maya Yamazaki, Nobuaki Okumura, Seiji Ito, Ikuko Yao, Takanobu Nakazawa, Tayo Katano, Masafumi Fukuda, Yutaka Hata, Kazuhiko Nishida, Hidemasa Furue, Akihiro Yamada, Toshifumi Takao, Manabu Abe, Kenji Sakimura, and Masahiko Watanabe
- Subjects
Pain Threshold ,SNi ,Proteome ,Gene Expression ,Mice, Transgenic ,Nerve Tissue Proteins ,AMPA receptor ,Receptors, N-Methyl-D-Aspartate ,proteomics ,Peripheral Nerve Injuries ,medicine ,Animals ,neuropathic pain ,Chemistry ,General Neuroscience ,Excitatory Postsynaptic Potentials ,General Medicine ,spinal lamina II ,Nerve injury ,New Research ,Cell biology ,SAP90-PSD95 Associated Proteins ,BEGAIN ,Mice, Inbred C57BL ,GluN2B ,Disease Models, Animal ,Spinal Cord ,postsynaptic density ,Hyperalgesia ,Touch ,Neuropathic pain ,Peripheral nerve injury ,Excitatory postsynaptic potential ,NMDA receptor ,Neuralgia ,Sensory and Motor Systems ,medicine.symptom ,Chronic Pain ,Postsynaptic density ,Neuroscience - Abstract
Visual Overview, Maintenance of neuropathic pain caused by peripheral nerve injury crucially depends on the phosphorylation of GluN2B, a subunit of the N-methyl-d-aspartate (NMDA) receptor, at Tyr1472 (Y1472) and subsequent formation of a postsynaptic density (PSD) complex of superficial spinal dorsal horn neurons. Here we took advantage of comparative proteomic analysis based on isobaric stable isotope tags (iTRAQ) between wild-type and knock-in mice with a mutation of Y1472 to Phe of GluN2B (Y1472F-KI) to search for PSD proteins in the spinal dorsal horn that mediate the signaling downstream of phosphorylated Y1472 GluN2B. Among several candidate proteins, we focused on brain-enriched guanylate kinase-associated protein (BEGAIN), which was specifically up-regulated in wild-type mice after spared nerve injury (SNI). Immunohistochemical analysis using the generated antibody demonstrated that BEGAIN was highly localized at the synapse of inner lamina II in the spinal dorsal horn and that its expression was up-regulated after SNI in wild-type, but not in Y1472F-KI, mice. In addition, alteration of the kinetics of evoked excitatory postsynaptic currents for NMDA but not those for α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptors in spinal lamina II was demonstrated by BEGAIN deletion. We demonstrated that mechanical allodynia, a condition of abnormal pain induced by innocuous stimuli, in the SNI model was significantly attenuated in BEGAIN-deficient mice. However, there was no significant difference between naive wild-type and BEGAIN-knockout mice in terms of physiological threshold for mechanical stimuli. These results suggest that BEGAIN was involved in pathological pain transmission through NMDA receptor activation by the phosphorylation of GluN2B at Y1472 in spinal inner lamina II.
- Published
- 2016
39. Influence of maxillary cortical bone thickness, implant design and implant diameter on stress around implants: A three-dimensional finite element analysis
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Roxana Stegaroiu, Shuichi Nomura, Kouichi Kurokawa, Nobuaki Okumura, and Eriko Kitamura
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Dental Implants ,Dental Stress Analysis ,Materials science ,business.industry ,medicine.medical_treatment ,Biomechanics ,Dentistry ,Finite element method ,Stress (mechanics) ,medicine.anatomical_structure ,Dental Prosthesis Design ,Maxilla ,medicine ,Humans ,Computer Simulation ,Dentistry (miscellaneous) ,Cortical bone ,Stress, Mechanical ,Implant ,Oral Surgery ,Dental implant ,business ,Cancellous bone ,Sinus (anatomy) - Abstract
Purpose There is no clear evidence of the factors that could improve implant biomechanics in the posterior maxilla. Thus, a finite element analysis was performed to investigate the effect of maxillary cortical bone thickness, implant design and diameter on stress around implants. Methods A total of 12 models of the posterior maxilla with implant were computer-simulated by varying the thickness of the alveolar cortical bone (1.5, 1.0, 0.5 or 0mm) and implant characteristics (cylindrical implant of 4.1-mm diameter, screw-type implants of 4.1-mm or 4.8-mm outer diameters). On top of each implant, forces were separately applied axially (100N) and buccolingually (50N), and the von Mises stresses were calculated. Results Regardless of load direction, implant design and diameter, cortical and cancellous bone stresses increased with the decrease of crestal cortical bone thickness. In the absence of crestal cortical bone, cancellous bone stresses were highest and, under axial load, were transferred to the sinus floor. Implant design and diameter influenced stress to a less extent, especially under buccolingual load and in the presence of crestal cortical bone. Conclusions From a biomechanical viewpoint, to improve implant success odds in the posterior maxilla, rather than implant selection, careful preoperative evaluation of the cortical bone at the planned implant site is recommended. If this cortical bone is very thin or even lacking, implant treatment should be carried on with caution by progressive loading in the range of functional loads.
- Published
- 2010
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40. A Novel Function of Thrombin-activatable Fibrinolysis Inhibitor during Rat Liver Regeneration and in Growth-promoted Hepatocytes in Primary Culture
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Taiichiro Seki, Yuichi Hasebe, Tomohiko Koh, Nobuaki Okumura, and Toyohiko Ariga
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Male ,Carboxypeptidase B2 ,medicine.medical_specialty ,Plasmin ,medicine.medical_treatment ,Biology ,Biochemistry ,Fibrin ,Molecular Basis of Cell and Developmental Biology ,Internal medicine ,Gene expression ,Fibrinolysis ,medicine ,Animals ,Hepatectomy ,RNA, Messenger ,RNA, Small Interfering ,Rats, Wistar ,Receptor ,Carbon Tetrachloride ,Molecular Biology ,Cells, Cultured ,Cell growth ,Liver Diseases ,Cell Biology ,Liver regeneration ,Liver Regeneration ,Rats ,Cell biology ,Disease Models, Animal ,Endocrinology ,medicine.anatomical_structure ,Hepatocyte ,Acute Disease ,Hepatocytes ,biology.protein ,Chemical and Drug Induced Liver Injury ,Cell Division ,medicine.drug - Abstract
Thrombin-activatable fibrinolysis inhibitor (TAFI) exhibits anti-fibrinolytic activity by removing C-terminal lysine residues from fibrin or plasminogen receptor proteins on the cellular surface, and plays an important role in the regulation of fibrinolysis. In this study, we examined the regulation of TAFI in hepatocytes during liver regeneration, and revealed its pivotal role in hepatocyte proliferation. In rat models, partial hepatectomy or carbon tetrachloride (CCl4)-induced acute liver injury suppressed the levels of plasma TAFI activity and hepatic TAFI mRNA, whereas this operation markedly increased both the hepatic plasmin activity and the level of proliferating cell nuclear antigen. In primary cultures of rat hepatocytes, the TAFI mRNA level was decreased under growth-promoting culture conditions. Treatment of the hepatocytes with TAFI siRNA increased the amount of plasmin on the hepatocytes and promoted hepatocyte proliferation. We concluded that TAFI regulates plasmin activity through its enzymatic activity whereby it reduces the plasminogen-binding capacity of the hepatocytes. The TAFI gene expression is down-regulated in hepatocyte proliferation for producing a fibrinolytic microenvironment suitable for cell growth. This is the first report on the role of TAFI in the pericellular fibrinolysis necessary for cellular proliferation.
- Published
- 2009
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41. The roles of TAFI in the cellular fibrinolysis
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Toyohiko Ariga, Nobuaki Okumura, and Taiichiro Seki
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Chemistry ,medicine.medical_treatment ,Immunology ,Fibrinolysis ,medicine - Published
- 2009
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42. Localization of phospho-tyrosine489-β-adducin immunoreactivity in the hypothalamic tanycytes and its involvement in energy homeostasis
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Akiko Okumura, Nobuaki Okumura, Hitoshi Gotoh, and Katsuya Nagai
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Male ,Dopamine and cAMP-Regulated Phosphoprotein 32 ,medicine.medical_specialty ,Immunoblotting ,Hypothalamus ,macromolecular substances ,Deoxyglucose ,Biology ,Energy homeostasis ,Cerebral Ventricles ,Eating ,chemistry.chemical_compound ,FYN ,Arcuate nucleus ,Internal medicine ,medicine ,Animals ,Homeostasis ,Phosphorylation ,Rats, Wistar ,Cytoskeleton ,Molecular Biology ,Injections, Intraventricular ,Tanycyte ,General Neuroscience ,Arcuate Nucleus of Hypothalamus ,Median Eminence ,Tyrosine phosphorylation ,Fasting ,Phosphoproteins ,Immunohistochemistry ,Rats ,Cytoskeletal Proteins ,Endocrinology ,medicine.anatomical_structure ,chemistry ,Median eminence ,Tyrosine ,Calmodulin-Binding Proteins ,Neurology (clinical) ,Energy Metabolism ,Injections, Intraperitoneal ,Developmental Biology - Abstract
beta-Adducin is a cytoskeletal protein that interacts with the actin filaments to suppress actin polymerization and facilitate actin-spectrin binding. We have previously shown that beta-adducin is phosphorylated by Fyn at tyrosine489 in the rat brain and bound to its Src-homology 2 domain. In the present study, we examined the immunohistochemical localization of the tyrosine489-phosphorylated form of beta-adducin (pY489-beta-adducin) in the rat brain. Among brain regions, highest immunoreactivity was located in the hypothalamic tanycytes that are of glial origin lining around the third cerebral ventricle. Their immunoreactive processes extended into the arcuate nucleus, ventromedial hypothalamus and the median eminence. In addition, the pY489-beta-adducin immunoreactivity in the tanycytes was enhanced after fasting for 36-48 h, being associated with a morphological change of the DARPP-32-immunoreactivity. Intraperitoneal injection of 2-deoxy-d-glucose also enhances pY489-beta-adducin immunoreactivity in the tanycytes, along with increased food intake. These results suggest that tyrosine phosphorylation of beta-adducin in the tanycytes is involved in hypothalamic regulation of food intake and energy homeostasis.
- Published
- 2008
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43. Effects of central injection of l-carnosine on sympathetic nerve activity innervating brown adipose tissue and body temperature in rats
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Nobuo Tsuruoka, Nobuaki Okumura, Hiroto Otani, Jiao Shen, Hitoshi Gotoh, Yoshinobu Kiso, Mamoru Tanida, Hiroyuki Taniguchi, Takuo Nakamura, and Katsuya Nagai
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Male ,medicine.medical_specialty ,Sympathetic nervous system ,Sympathetic Nervous System ,Time Factors ,animal structures ,Physiology ,Clinical Biochemistry ,Central nervous system ,Carnosine ,Biology ,Urethane ,Biochemistry ,c-Fos ,Body Temperature ,Cellular and Molecular Neuroscience ,chemistry.chemical_compound ,Endocrinology ,Adipose Tissue, Brown ,Internal medicine ,Brown adipose tissue ,medicine ,Animals ,Rats, Wistar ,Autonomic nerve ,Dose-Response Relationship, Drug ,Thermoregulation ,Rats ,body regions ,medicine.anatomical_structure ,chemistry ,Hypothalamus ,biology.protein ,Anesthetics, Intravenous - Abstract
In the present study, using urethane-anesthetized rats, we examined the effects of intralateral cerebral ventricular (LCV) injection of various doses of l -carnosine on neural activity innervating brown adipose tissue (BAT-SNA) and body temperature (BT). We found that injection of a low dose of l -carnosine (0.01 μg) suppressed BAT-SNA significantly. Conversely, a high dose (100 μg) of l -carnosine significantly elevated BAT-SNA. In the light period (14:00), brown adipose tissue temperature (BAT-T) and BT were suppressed after low and elevated after high dose injection of l -carnosine whereas in the dark period (2:00), these parameters remained unchanged with l -carnosine treatment. Bilateral lesions of the hypothalamic suprachiasmatic nucleus (SCN) abolished the effects of low and high doses of l -carnosine on BAT-SNA, BAT-T and BT. Furthermore, high dose treatment with l -carnosine altered c-Fos induction in the SCN and the PVN. These results suggest that l -carnosine affects BAT-SNA, BAT-T and BT in a dose-dependent manner in the rat, and that the SCN may be involved in these effects.
- Published
- 2007
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44. Interaction of α1-syntrophin with multiple isoforms of heterotrimeric G protein α subunits
- Author
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Akiko Okumura, Nobuaki Okumura, and Katsuya Nagai
- Subjects
Pleckstrin homology domain ,G beta-gamma complex ,Membrane protein ,Biochemistry ,G protein ,GTP-Binding Protein alpha Subunits ,Dystrobrevin ,Heterotrimeric G protein ,Cell Biology ,Biology ,Molecular Biology ,Syntrophin - Abstract
Syntrophins are components of the dystrophin-glycoprotein complex of the plasma membrane in muscular and neuronal cells, and recruit signaling proteins such as neuronal nitric oxide synthase via their multiple protein-protein interaction motifs. In this study, we found that alpha1-syntrophin binds to various subtypes of guanine nucleotide-binding protein alpha subunits (Galpha). A pull-down analysis using full-length recombinant alpha1-syntrophin and MS analysis showed that alpha1-syntrophin was coprecipitated with several isoforms of Galpha proteins in addition to known binding partners such as dystrobrevin and neuronal nitric oxide synthase. Further analysis using recombinant Galpha isoforms showed that alpha1-syntrophin associates with at least Galphai, Galphao, Galphas and Galphaq subtypes. The region of alpha1-syntrophin required for its interaction with Galphas was determined as the N-terminal half of the first pleckstrin homology domain. In addition, the syntrophin unique domain of alpha1-syntrophin was suggested to contribute to this interaction. In COS-7 cells, downregulation of alpha1-syntrophin by RNAi resulted in enhanced cAMP production and cAMP response element-binding protein phosphorylation induced by isoproterenol treatment. These results suggest that alpha1-syntrophin provides a scaffold for the Galpha family of heterotrimeric G proteins in the brain to regulate the efficiency of signal transduction evoked by G-protein-coupled receptors.
- Published
- 2007
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45. Evidence for an essential role of intradimer interaction in catalytic function of carnosine dipeptidase II using electrospray-ionization mass spectrometry
- Author
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Nobuaki, Okumura, Jun, Tamura, and Toshifumi, Takao
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Models, Molecular ,Dipeptidases ,Mice ,Spectrometry, Mass, Electrospray Ionization ,Molecular Sequence Data ,Animals ,Humans ,Point Mutation ,Amino Acid Sequence ,Articles ,Protein Multimerization ,Sequence Alignment - Abstract
Carnosine dipeptidase II (CN2/CNDP2) is an M20 family metallopeptidase that hydrolyses various dipeptides including β‐alanyl‐l‐histidine (carnosine). Crystallographic analysis showed that CN2 monomer is composed of one catalytic and one dimerization domains, and likely to form homodimer. In this crystal, H228 residue of the dimerization domain interacts with the substrate analogue bestatin on the active site of the dimer counterpart, indicating that H228 is involved in enzymatic reaction. In the present study, the role of intradimer interaction of CN2 in its catalytic activity was investigated using electrospray‐ionization time‐of‐flight mass spectrometry (ESI‐TOF MS). First, a dimer interface mutant I319K was prepared and shown to be present as a folded monomer in solution as examined by using ESI‐TOF MS. Since the mutant was inactive, it was suggested that dimer formation is essential to its enzymatic activity. Next, we prepared H228A and D132A mutant proteins with different N‐terminal extended sequences, which enabled us to monitor dimer exchange reaction by ESI‐TOF MS. The D132A mutant is a metal ligand mutant and also inactive. But the activity was partially recovered time‐dependently when H228A and D132A mutant proteins were incubated together. In parallel, H228A/D132A heterodimer was formed as detected by ESI‐TOF MS, indicating that interaction of a catalytic center with H228 residue of the other subunit is essential to the enzymatic reaction. These results provide evidence showing that intradimer interaction of H228 with the reaction center of the dimer counterpart is essential to the enzymatic activity of CN2.
- Published
- 2015
46. Effects of the probiotic strain Lactobacillus johnsonii strain La1 on autonomic nerves and blood glucose in rats
- Author
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Toshihiko Yamano, Nobuaki Okumura, Katsuya Nagai, Yoichi Fukushima, Keiko Maeda, Mamoru Tanida, and Akira Niijima
- Subjects
Blood Glucose ,Male ,medicine.medical_specialty ,Lactobacillus casei ,Drinking ,Administration, Oral ,Deoxyglucose ,Carbohydrate metabolism ,Glucagon ,General Biochemistry, Genetics and Molecular Biology ,Oral administration ,Internal medicine ,Adrenal Glands ,medicine ,Animals ,Autonomic Pathways ,Rats, Wistar ,General Pharmacology, Toxicology and Pharmaceutics ,Lactobacillus johnsonii ,Autonomic nerve ,biology ,business.industry ,Probiotics ,Glucagon secretion ,General Medicine ,Glucose Tolerance Test ,biology.organism_classification ,Rats ,Vagus nerve ,Lactobacillus ,Endocrinology ,business - Abstract
Oral administration of Lactobacillus casei reportedly reduces blood glucose concentrations in a non-insulin-dependent diabetic KK-Ay mouse model. In order to determine if other lactobacillus strains affect glucose metabolism, we evaluated the effect of the probiotic strain Lactobacillus johnsonii La1 (LJLa1) strain on glucose metabolism in rats. Oral administration of LJLa1 via drinking water for 2 weeks inhibited the hyperglycemia induced by intracranial injection of 2-deoxy- d -glucose (2DG). We found that the hyperglucagonemic response induced by 2DG was also suppressed by LJLa1. Oral administration of LJLa1 for 2 weeks also reduced the elevation of blood glucose and glucagon levels after an oral glucose load in streptozotocin-diabetic rats. In addition, we recently observed that intraduodenal injection of LJLa1 reduced renal sympathetic nerve activity and enhanced gastric vagal nerve activity, suggesting that LJLa1 might affect glucose metabolism by changing autonomic nerve activity. Therefore, we evaluated the effect of intraduodenal administration of LJLa1 on adrenal sympathetic nerve activity (ASNA) in urethane-anesthetized rats, since the autonomic nervous system, including the adrenal sympathetic nerve, may be implicated in the control of the blood glucose levels. Indeed, we found that ASNA was suppressed by intraduodenal administration of LJLa1, suggesting that LJLa1 might improve glucose tolerance by reducing glucagon secretion via alteration of autonomic nerve activities.
- Published
- 2006
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47. Fyn-induced phosphorylation of β-adducin at tyrosine 489 and its role in their subcellular localization
- Author
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Takeshi Yagi, Katsuya Nagai, Nobuaki Okumura, Takaki Shima, Akiko Okumura, and Hitoshi Gotoh
- Subjects
Biophysics ,Protein tyrosine phosphatase ,Proto-Oncogene Proteins c-fyn ,SH2 domain ,environment and public health ,Biochemistry ,Mice ,chemistry.chemical_compound ,FYN ,Chlorocebus aethiops ,Animals ,Phosphorylation ,Molecular Biology ,Mice, Knockout ,Tyrosine-protein kinase CSK ,Chemistry ,Cell Membrane ,hemic and immune systems ,Tyrosine phosphorylation ,Cell Biology ,Immunohistochemistry ,Molecular biology ,Protein Transport ,enzymes and coenzymes (carbohydrates) ,Tyrosine kinase 2 ,COS Cells ,embryonic structures ,Tyrosine ,Calmodulin-Binding Proteins ,Rabbits ,biological phenomena, cell phenomena, and immunity ,Protein Binding ,Signal Transduction ,Proto-oncogene tyrosine-protein kinase Src - Abstract
Fyn is a Src-family tyrosine kinase involved in neuronal development, transmission, and plasticity in mammalian central nervous system. We have previously reported that Fyn binds to a cytoskeletal protein, beta-adducin, in a phosphorylation-dependent manner. In the present report, we show that Fyn phosphorylates beta-adducin at tyrosine 489 located in its C-terminal tail domain. Phosphorylation of beta-adducin at Y489 was required for its association with the Fyn-SH2 domain. An antibody specific to the phosphorylated form of beta-adducin was raised in rabbits and showed that Y489 of beta-adducin was phosphorylated in wild type, but not in Fyn(-/-) mice, suggesting that Y489 of beta-adducin is phosphorylated downstream of Fyn in vivo. After phosphorylation at Y489, beta-adducin was translocated to the cell periphery, and colocalized with Fyn. These results suggest that Fyn phosphorylates and binds to beta-adducin at Y489, resulting in translocation of beta-adducin to the Fyn-enriched regions in the plasma membrane.
- Published
- 2006
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48. Regulation of sympathetic and parasympathetic nerve activities by BIT/SHPS-1
- Author
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Hiroyuki Taniguchi, Nobuaki Okumura, Shin-ichiro Sano, Katsuya Nagai, Juri Hamada, and Mamoru Tanida
- Subjects
Male ,medicine.medical_specialty ,Sympathetic Nervous System ,Central nervous system ,Hypothalamus ,Blood Pressure ,Biology ,Kidney ,Body Temperature ,chemistry.chemical_compound ,Parasympathetic nervous system ,Adipose Tissue, Brown ,Parasympathetic Nervous System ,Internal medicine ,Abdomen ,Brown adipose tissue ,medicine ,Animals ,Phosphorylation ,Rats, Wistar ,Receptors, Immunologic ,Cells, Cultured ,Injections, Intraventricular ,Cerebral Cortex ,General Neuroscience ,Stomach ,Antibodies, Monoclonal ,Vagus Nerve ,Tyrosine phosphorylation ,Embryo, Mammalian ,Rats ,Vagus nerve ,Electrophysiology ,Autonomic nervous system ,medicine.anatomical_structure ,Endocrinology ,chemistry ,Tyrosine ,Homeostasis - Abstract
The hypothalamus plays a central role in the homeostatic regulation of internal physiological conditions such as body temperature and energy balance. We have previously shown that cold exposure enhances tyrosine phosphorylation of BIT/SHPS-1 (brain immunoglobulin-like molecule with tyrosine-based activation motifs/SHP substrate-1) in hypothalamic nuclei including the suprachiasmatic nucleus. In order to elucidate the function of BIT/SHPS-1 in the hypothalamus, we stimulated BIT/SHPS-1 in vivo by using the anti-BIT monoclonal antibody (mAb) 1D4, which reacts with the extracellular domain of BIT/SHPS-1 and induces its tyrosine phosphorylation. Administration of mAb 1D4 into the third cerebral ventricle enhanced the electrical activity of the renal sympathetic nerves, while it suppressed that of the gastric parasympathetic nerves. Similarly, blood pressure increased in response to the mAb 1D4 injection, and additionally, temperatures of the abdomen and brown adipose tissue increased. These results indicate that BIT/SHPS-1 is involved in the hypothalamic regulation of thermogenesis via the autonomic nervous system.
- Published
- 2006
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49. Evidence for phosphorylation of rat liver glucose-regulated protein 58, GRP58/ERp57/ER-60, induced by fasting and leptin
- Author
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Katsuya Nagai, Osamu Nishimura, Nobuaki Okumura, Kanako Kita, Makoto Watanabe, Toshiya Matsubara, and Toshifumi Takao
- Subjects
Leptin ,Male ,STAT3 Transcription Factor ,medicine.medical_specialty ,GRP58 ,Glucose-regulated protein ,Protein Disulfide-Isomerases ,Biophysics ,Biochemistry ,Mass Spectrometry ,STAT3 ,Structural Biology ,Internal medicine ,Alkaline phosphatase ,Serine ,Genetics ,medicine ,Animals ,Electrophoresis, Gel, Two-Dimensional ,Phosphorylation ,Rats, Wistar ,Protein disulfide-isomerase ,Hydrogen fluoride ,Molecular Biology ,Heat-Shock Proteins ,biology ,Activator (genetics) ,Chemistry ,Fasting ,Cell Biology ,MALDI-TOF-MS ,Rats ,Endocrinology ,Liver ,biology.protein ,Antibody ,Food Deprivation ,ERp57 ,Protein Processing, Post-Translational ,Signal Transduction - Abstract
Glucose-regulated protein 58 (GRP58)-like immunoreactivity in rat liver obtained in the evening or after fasting underwent an electrophoretic band-shift, which disappeared after phosphatase-treatment. Since mass spectrometric analysis raised a possibility that Ser150 of GRP58 is phosphorylated, an antibody against the phosphoserine150 GRP58 was generated. Immunoreactivity to this antibody was increased in the evening and after fasting. Since GRP58 was shown to interact with signal transducer and activator of transduction 3 (STAT3), a leptin-related protein, the effect of leptin was examined. Immunoreactivity to the anti-phosphoGRP58 antibody was markedly elevated after the leptin injection, indicating that Ser150 of GRP58 is phosphorylated after fasting and leptin-treatment.
- Published
- 2005
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50. Identification and Characterization of a Mouse Dipeptidase That Hydrolyzes l-Carnosine
- Author
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Katsuya Nagai, Nobuaki Okumura, Hiroto Otani, and Akiko Hashida-Okumura
- Subjects
Dipeptidase ,Dipeptidases ,Molecular Sequence Data ,Central nervous system ,Striatum ,Biochemistry ,Mice ,medicine ,Animals ,Tissue Distribution ,Amino Acid Sequence ,Rats, Wistar ,Molecular Biology ,Phylogeny ,Neurons ,chemistry.chemical_classification ,biology ,Carnosine ,Hydrolysis ,Brain ,General Medicine ,Rats ,Olfactory bulb ,Autonomic nervous system ,medicine.anatomical_structure ,Enzyme ,nervous system ,chemistry ,Hypothalamus ,biology.protein ,Female ,Tuberomammillary nucleus - Abstract
L-Carnosine is a bioactive dipeptide present in mammalian tissues including the central nervous system. We have recently shown that L-carnosine is involved in the regulation of energy homeostasis through the autonomic nervous system, but the mechanisms for its biosynthesis and degradation have not yet been fully elucidated. Here we report the biochemical and immunohistochemical characterization of a mammalian protein that has a 17% overall amino acid sequence homology with a Lactobacilus carnosinase, PepV. A recombinant protein expressed in E. coli has the enzymatic ability to digest L-carnosine and various other dipeptides, and this activity is inhibited by bestatin. It requires Mn 2 + for enzymatic activity and its effect is reversible. Immunohistochemical analysis showed that a few neuronal populations express this protein at very high levels. It is highly expressed in the parafascicular nucleus of the thalamus, tuberomammillary nucleus of the hypothalamus and the mitral cell layer of the olfactory bulb. In addition, neuronal processes, but not cell bodies, are stained in the striatum. In all these areas, the protein did not colocalize with the glial fibrilary acidic protein. These results suggest that a peptidase that digests L-carnosine is enriched in several specific neuronal populations in the central nervous system.
- Published
- 2005
- Full Text
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