103 results on '"Nitin Mahajan"'
Search Results
2. Myeloid lineage switch following CD7-targeted chimeric antigen receptor T-cell therapy in relapsed/refractory T-cell acute lymphoblastic leukemia
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Ibrahim Aldoss, Parastou Tizro, Davsheen Bedi, James K. Mangan, Mary C. Clark, David Spencer, Joo Y. Song, Sindhu Cherian, Raju Pillai, Young Kim, Nitin Mahajan, Ketevan Gendzekhadze, Mike James, Kenneth Jacobs, Jan Davidson-Moncada, Stephen J. Forman, Huan-You Wang, and Michelle Afkhami
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Diseases of the blood and blood-forming organs ,RC633-647.5 - Published
- 2023
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3. A novel stability-indicating method for known and unknown impurities profiling for diltiazem hydrochloride pharmaceutical dosage form (tablets)
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Nitin Mahajan, Suparna Deshmukh, and Mazahar Farooqui
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Diltiazem hydrochloride ,Method development ,Method validation ,Impurities profiling ,Stability indicating ,Therapeutics. Pharmacology ,RM1-950 ,Pharmacy and materia medica ,RS1-441 - Abstract
Abstract Background A novel gradient, high-sensitive and specific stability-indicating reverse-phase HPLC method was developed and validated for quantitative purpose of known, unknown and degradant impurities profiling for diltiazem hydrochloride tablets. The impurities were separated on the Zorbax RX C8 column (150 mm × 4.6 mm, 5 μm) with mobile phase-A consisting of a mixture of 0.05 M sodium dihydrogen phosphate monohydrate buffer pH 3.0 and methanol in the ratio 800:200v/v and mobile phase-B consisting of acetonitrile with a flow rate of 1.0 mL min−1. The column compartment was maintained at 35 °C, and the detection wavelength was 240 nm. Diltiazem hydrochloride, its known impurities and unknown impurities have been well resolved from each other. Results The linearity of the method has been demonstrated across the concentration range of 0.18 to 5.65 µg mL−1 for EP impurity-F with correlation coefficient R 2 greater than 0.99. Recovery of method was proved from LOQ to 150% for known and unknown impurities with respect to test concentration and found in between 80 and 120%. Forced degradation study and specificity experiment results with mass balance proved the stability-indicating nature of the method and separated all known, unknown impurities and degradants from each other as well as from main drug component (diltiazem hydrochloride). The mass balance for stress study was found in between 95 and 105%. Conclusion Newly developed analytical method was validated as per ICH Q2 (R1) guidelines “Validation of analytical procedure” and found linear, accurate, specific, robust and precise in the established working range.
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- 2021
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4. Error-corrected sequencing strategies enable comprehensive detection of leukemic mutations relevant for diagnosis and minimal residual disease monitoring
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Erin L. Crowgey, Nitin Mahajan, Wing Hing Wong, Anilkumar Gopalakrishnapillai, Sonali P. Barwe, E. Anders Kolb, and Todd E. Druley
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Error-corrected sequencing ,Minimal residual disease ,Next generation sequencing ,Pediatric leukemia ,Computational biology ,Internal medicine ,RC31-1245 ,Genetics ,QH426-470 - Abstract
Abstract Background Pediatric leukemias have a diverse genomic landscape associated with complex structural variants, including gene fusions, insertions and deletions, and single nucleotide variants. Routine karyotype and fluorescence in situ hybridization (FISH) techniques lack sensitivity for smaller genomic alternations. Next-generation sequencing (NGS) assays are being increasingly utilized for assessment of these various lesions. However, standard NGS lacks quantitative sensitivity for minimal residual disease (MRD) surveillance due to an inherently high error rate. Methods Primary bone marrow samples from pediatric leukemia (n = 32) and adult leukemia subjects (n = 5), cell line MV4–11, and an umbilical cord sample were utilized for this study. Samples were sequenced using molecular barcoding with targeted DNA and RNA library enrichment techniques based on anchored multiplexed PCR (AMP®) technology, amplicon based error-corrected sequencing (ECS) or a human cancer transcriptome assay. Computational analyses were performed to quantitatively assess limit of detection (LOD) for various DNA and RNA lesions, which could be systematically used for MRD assays. Results Matched leukemia patient samples were analyzed at three time points; diagnosis, end of induction (EOI), and relapse. Similar to flow cytometry for ALL MRD, the LOD for point mutations by these sequencing strategies was ≥0.001. For DNA structural variants, FLT3 internal tandem duplication (ITD) positive cell line and patient samples showed a LOD of ≥0.001 in addition to previously unknown copy number losses in leukemia genes. ECS in RNA identified multiple novel gene fusions, including a SPANT-ABL gene fusion in an ALL patient, which could have been used to alter therapy. Collectively, ECS for RNA demonstrated a quantitative and complex landscape of RNA molecules with 12% of the molecules representing gene fusions, 12% exon duplications, 8% exon deletions, and 68% with retained introns. Droplet digital PCR validation of ECS-RNA confirmed results to single mRNA molecule quantities. Conclusions Collectively, these assays enable a highly sensitive, comprehensive, and simultaneous analysis of various clonal leukemic mutations, which can be tracked across disease states (diagnosis, EOI, and relapse) with a high degree of sensitivity. The approaches and results presented here highlight the ability to use NGS for MRD tracking.
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- 2020
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5. The snoRNA target of t(4;14) in multiple myeloma regulates ribosome biogenesis
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Vanessa Oliveira, Nitin Mahajan, Melissa L. Bates, Chakrapani Tripathi, Kyusik Q. Kim, Hani S. Zaher, Leonard B. Maggi Jr, and Michael H. Tomasson
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chromosomal translocation ,hematological malignancy ,protein synthesis ,reactive oxygen species ,Biology (General) ,QH301-705.5 - Abstract
Abstract The orphan small nucleolar RNA (snoRNA) ACA11 is overexpressed as a result of the t(4;14) chromosomal translocation in multiple myeloma (MM), increases reactive oxygen species, and drives cell proliferation. Like other snoRNAs, ACA11 is predominantly localized to a sub‐nuclear organelle, the nucleolus. We hypothesized that increased ACA11 expression would increase ribosome biogenesis and protein synthesis. We found that ACA11 overexpression in MM cells increased nucleolar area and number as well as argyrophilic nuclear organizing regions (AgNORs). Supporting these data, samples from t(4;14)‐positive patients had higher AgNORs scores than t(4;14)‐negative samples. ACA11 also upregulated ribosome production, pre‐47S rRNA synthesis, and protein synthesis in a ROS‐dependent manner. Lastly, ACA11 overexpression enhanced the response to proteasome inhibitor in MM cells, while no effect was found in response to high doses of melphalan. Together, these data demonstrate that ACA11 stimulates ribosome biogenesis and influences responses to chemotherapy. ACA11 may be a useful target to individualize the treatment for t(4;14)‐positive myeloma patients.
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- 2019
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6. Strong concordance between RNA structural and single nucleotide variants identified via next generation sequencing techniques in primary pediatric leukemia and patient-derived xenograft samples
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Sonali P. Barwe, Anilkumar Gopalakrisnapillai, Nitin Mahajan, Todd E. Druley, E. Anders Kolb, and Erin L. Crowgey
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error-corrected sequencing ,genomics ,patient derived xenograft models ,pediatric cancers ,structural variants ,Genetics ,QH426-470 - Abstract
Acute leukemia represents the most common pediatric malignancy comprising diverse subtypes with varying prognosis and treatment outcomes. New and targeted treatment options are warranted for this disease. Patient-derived xenograft (PDX) models are increasingly being used for preclinical testing of novel treatment modalities. A novel approach involving targeted error-corrected RNA sequencing using ArcherDX HemeV2 kit was employed to compare 25 primary pediatric acute leukemia samples and their corresponding PDX samples. A comparison of the primary samples and PDX samples revealed a high concordance between single nucleotide variants and gene fusions whereas other complex structural variants were not as consistent. The presence of gene fusions representing the major driver mutations at similar allelic frequencies in PDX samples compared to primary samples and over multiple passages confirms the utility of PDX models for preclinical drug testing. Characterization and tracking of these novel cryptic fusions and exonal variants in PDX models is critical in assessing response to potential new therapies.
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- 2020
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7. Post-traumatic superolateral dislocation of condyle: A case series of 18 condyles with review of literature and a proposed classification.
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Dichen Palmo Bhutia, Divya Mehrotra, Nitin Mahajan, Debraj Howlader, and Jagdish Gamit
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Superolateral dislocation ,closed reduction ,open reduction ,mandibular condyle ,Dentistry ,RK1-715 - Abstract
Aim: The aim is to review the English literature for post-traumatic superolateral dislocation of mandibular condyle (SDMC),discuss their dynamics and clinical management and to propose to modify the existing classification of SDMC. Patients and Methods: A literature search was carried at Pubmed, Sciencedirect, Google and references from reported articles were crosschecked to look for the cases of SDMC from 1969 to 2015 in English language. Also, we have reviewed 11 of our patients with total of 18 superolateral dislocated intact or sagittal split condyles ,who visited our unit in the previous two years. Results: In our retrospective analysis 58 cases of SDMC were found in the literature, of which 38 had intact mandibular condyles and 20 had sagittal split. Early and intact SDMC were successfully managed conservatively with closed reduction, whereas old cases and largely fractured condyles necessitated open reduction. Additionally, we observed an unusual dislocation associated with fracture of contralateral posterior mandible(angle) in our series which did not gratify the existing classification. Conclusion: Alteration of the existing classification was required to accommodate the unusual type of dislocation.
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- 2017
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8. Prediction of Left Main Coronary Artery Obstruction by 12‐Lead Electrocardiography: ST Segment Deviation in Lead V6 Greater than or Equal to ST Segment Deviation in Lead V1
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Nitin Mahajan, Gerald Hollander, Deepak Thekkoott, Brian Temple, Bilal Malik, Sunil Abrol, David Yens, Jacob Shani, and Edgar Lichstein
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left main coronary ,reciprocal electrocardiographic changes ,acute coronary syndrome ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Background: Acute coronary syndrome (ACS) resulting from culprit lesion in left main coronary artery (LMCA) can cause rapid hemodynamic deterioration. It is important to identify these patients early to facilitate timely revascularization. ST segment elevation in aVR greater than or equal to V1 (aVR‐V1≥ 0) has been suggested as a sensitive predictor of LMCA disease. As a result of balanced forces, we hypothesized that ST deviation in V6 greater than or equal to ST deviation in V1 (V6‐V1≥ 0) might be a good determinant of LMCA disease. Methods: We compared admission 12‐lead ECGs of ACS resulting from culprit LMCA lesion (n = 75, group I) with ACS resulting from culprit left anterior descending lesion (n = 81, group II). Group I was selected over a period of 10 years. We compared V6‐V1≥ 0 to aVR‐V1≥ 0 in both groups. We also looked at ratios of ST deviations in V6,V1 (V6/V1≥ 1) and aVR,V1 (aVR/V1≥ 1) in patients where ST segment in V1 was not isoelectric (group I = 54 and group II = 55). Results: ST deviation in V6 was significantly greater in group I as compared to group II (P < 0.001). The reliabilities of V6‐V1≥ 0, V6/V1≥ 1, aVR‐V1≥ 0, and aVR/V1≥ 1 in predicting LMCA disease were determined. Conclusion: This is the largest series of ECG analysis on ACS resulting from culprit LMCA lesion. V6‐V1≥ 0 and V6/V1≥ 1 were more sensitive in predicting LMCA as culprit vessel in comparison to previously reported greater ST segment elevation in aVR than V1.
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- 2006
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9. Severe Acute Necrotising Pancreatitis Presenting as Pancreaticocutaneous Fistula: A Rare Complication
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Janhavi Nitin Mahajan, Keyur Kishor Saboo, Yogesh Kautikrao Kakde, Sourya Acharya, and Sunil Kumar
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necrostomy ,pancreatic duct ,fistuala ,necrosis ,Medicine - Abstract
Dear Editor, Pancreatic glandular necrosis is the most common contributor to severe acute pancreatitis. When necrosis is present, the mortality and morbidity that come with acute pancreatitis are significantly higher, with associated infection in the necrotic area. Pancreatic fistulas generated by a ruptured pancreatic duct can develop following the surgery. In 15-23% of instances, pancreatic fistulas aggravate necrotising pancreatitis [1]. Treatment can range from early surgical debridement (“necrosectomy”) to aggressive intensive medical care [2]. This letter is about a 36-year-old male, who came to the casualty with complains of pain in abdomen radiating to his back and associated with distension of abdomen, nausea and 8-10 episodes of vomiting since five days. The patient was a chronic alcoholic. There were no other co-morbidities. He was admitted to the Intensive Medical Care Unit. On physical examination, the patient was afebrile, tachycardia was present, and abdomen was tender. Investigations revealed serum amylase to be 800 U/L, serum lipase 1400 U/L, total leucocyte count 12.2×109 /L, platelets 1.62 lac, and serum calcium 6mg/dl. Ultrasonography (abdomen and pelvis) was suggestive of acute pancreatitis, hepatomegaly with grade II fatty liver, and mild splenomegaly. The patient was kept nil by mouth and was started on fluid resuscitation, injection Meropenum 1 gm i/v thrice a day, injectable metronidazole 100 ml thrice a day, injection tramadol 100 ml i.v. thrice a day, pancreatin minimicrospheres capsules 25000-10000-10000 IU thrice a day, multivitamin with L-Methionine, and selenium yeast tablets twice a day. Contrast-enhanced CT abdomen revealed bulky pancreas throughout its course and peri-pancreatic fat stranding and fluid collection abutting lesser curvature of stomach suggestive of acute pancreatitis with necrotic collection, modified CT severity index score was 10. Interventional Radiologist’s opinion was taken in view of necrotic collection. An USG-guided catheter was inserted, and 300 ml output was obtained in five days. The drain was removed when there was less than 20 mL output per day. The patient developed anterior abdominal wall swelling within three days after the drain was removed [Table/Fig-1]. Local examination revealed pus draining through the catheter insertion site along with anterior abdominal wall swelling [Table/Fig-2]. As the abdominal distension increased CECT abdomen was repeated. It revealed acute pancreatitis with necrotic collection in subcutaneous and intramuscular plane of anterior abdominal wall, in the left hypochondriac and supra umbilical region communicating through a tract [Table/Fig-3]. The patient was planned for incision and drainage and 50 cc of necrotic material was drained [Table/Fig-4]. Describe patients condition before discharge and is awaiting followup after one month. This case reports an uncommon complication that happened during the treatment of a reasonably frequent acute surgical illness. Enteroatmospheric fistulas are known to have a notably higher fatality rate than their analogue, enterocutaneous fistulas [3-5]. Pancreaticoatmospheric fistulas may present in similar pattern and is associated with high mortality (28.6%) [3]. When compared to primary open necrosectomy, the Patients with Acute Necrotising Pancreatitis (PANTER) study found that the minimally invasive stepup method lowered the rate of complications and mortality. In this way, more than one-third of patients were effectively treated with percutaneous drainage only [6]. Management of severe acute necrotising pancreatitis necessitate multidisciplinary approaches, including resuscitative and supportive measures, as well as prompt management of fistula drainage for optimal wound management with eventual wound coverage and fistula closure.
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- 2023
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10. Polyglobulia Masquerading as Polycythaemia Vera Presenting as Superior Mesenteric Vein Thrombosis: A Case Report
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Janhavi Nitin Mahajan, Prerna Verma, Yogesh Kakde, Sunil Kumar, and Anil Wanjari
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haemoglobin ,jak2 mutation ,myeloproliferative disorder ,pain abdomen ,Medicine - Abstract
Polyglobulia is secondary polycythaemia commonly due to underlying non haematological diseases like Chronic Obstructive Pulmonary Disease (COPD), obstructive sleep apnoea and also sometimes in people living in hilly or forest areas. It can occur in any venous or atrial thrombosis of the vessels, but cardiac, cerebral, and mesenteric vessels are usually involved. One of the rare causes of abrupt severe abdominal discomfort is portal vein thrombosis, usually associated with liver cirrhosis and thrombophilia. In this case report, the authors have highlighted a case of a 36-year-old male residing in the hilly area of Maharashtra, India, who reported to hospital with severe abdominal pain due to superior mesenteric vein thrombosis. On investigation, he had increased haemoglobin with raised haematocrit diagnosed as polyglobulia and became part of polycythaemia with positive JAK2 V617F mutation.
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- 2022
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11. Scrofula Presenting as Tubercular Meningitis: A Neglected Sequelae
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Yogesh Kautikrao Kakde, Dhruv Talwar, Charan Singh Bagga, Janhavi Nitin Mahajan, and Sunil Kumar
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complication ,extrapulmonary tuberculosis ,scrotal ulcer ,Medicine - Abstract
Tuberculosis (TB) is a multiorgan disease that can affect any part of the body. Though it is thought to be affecting mainly the pulmonary system, genitourinary TB is a rare but important manifestation of TB. It has been reported in
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- 2022
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12. Effect of Magnetic field on dielectric properties in PLT/BNCFO composites
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Indu Sharma, Shruti Mahajan, Vishal Arora, Mehak Arora, Nitin Mahajan, Kanika Aggarwal, and Anupinder Singh
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General Materials Science ,Condensed Matter Physics - Abstract
The main goal of this study is to analyze the magnetic, dielectric, and magneto-dielectric characteristics of Pb1− x La x Ti1− x O 3 - (Ba1–3 x Nd2 x )4Co2Fe36O60 (where x = 0.25) composite material at various temperatures T1-T3 (i.e 1100°C ,1200°C, 1300°C respectively). The X-ray diffraction investigation has been introduced in order to pinpoint the creation of the U-type hexaferrite phase. SEM micrographs reveal that sample sintered at T2 reached the maximum value of grain size and the largest experimental density value of 6.14 g/cm3 due to the composite material's intensified grain growth. The magnetic investigations further indicate that the sample T2 achieved the highest remnant magnetization, measuring 1.550 emu/g, revealing the accuracy of the sintering temperature. The magneto-dielectric investigations demonstrate the presence of multiferroicity in all samples, and came to the conclusion that sample T2 exhibits the highest magneto-dielectric response of 41.99 at 1.2 Tesla and a magneto-dielectric coefficient (γ) of around 0.7609 g2/emu2. Numerous metrics, including nyquist plots, impedance, electrical modulus, dielectric constant, and conductivity, were carefully examined in order to determine the electrical properties of the proposed sample. It was found that sample T2 produced the enhanced results and had the right temperature for the substance to develop.
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- 2023
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13. DEGRADATION KINETICS OF CARVEDILOL PHARMACEUTICAL DOSAGE FORMS (TABLETS) THROUGH STRESS DEGRADATION STUDY
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NITIN MAHAJAN, SUPARNA DESHMUKH, and MAZAHAR FAROOQUI
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Pharmaceutical Science - Abstract
Objective: The aim of the research work to monitor impurities profiling and degradation kinetics of Carvedilol Pharmaceutical Dosage Form (Tablets) through stress degradation study. Methods: To study impurity profiling and degradation kinetics Chromatographic condition used as, Inertsil ODS 3V column (150 mm x 4.6 mm, 5μm) with mobile phase consisting Mobile phase-A (Water, Acetonitrile and Trifluroacetic acid in the ratio of 80:20:0.1 v/v/v respectively and pH adjusted to 2.0 with dilute potassium hydroxide solution) and Mobile phase-B (Water and acetonitrile in the ratio of 100:900 v/v respectively) delivered at flow rate of 1.0 ml min-1 and the detection wavelength 240 nm. The column compartment temperature maintained at 40 °C. Results: Stress degradation study conducted using Acid, Alkali, Oxidation, Humidity, Thermal and Photolytic stress degradation conditions. Known, unknown and degradant impurities nature and degradation kinetics in different stressed degradation conditions were monitored through stability indicated method reverse phase HPLC method. Carvedilol molecule found sensitive to Oxidation and Alkali conditions. Impurity-A significantly increased from its not detected level. Carvedilol molecule found stable in Acid, Humidity, Thermal and Photolytic stress degradation condition. In all stressed conditions, mass balance was found between 95% to 105% and peak purity of carvedilol peak was found pure. Conclusion: Stress degradation study is required to know the degradation pathway of product and to prove the stability indicating nature of the analytical method. Study provide information pertaining to the intrinsic stability of drug product.
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- 2022
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14. Clinical Study to Evaluate the Efficacy of Lekhaniya Mahakashayain the Management of Medoroga w.s.r. to Dyslipidemia
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Poonam Gupta and Nitin Mahajan
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- 2022
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15. Stability Indicating Method for Known and Unknown Impurities Profiling for Vildagliptin in Vildagliptin Tablet
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Mazhar Farooqui, Nitin Mahajan, and Suparna Deshmukh
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Profiling (computer programming) ,Chromatography ,Chemistry ,Impurity ,Stability indicating ,Biophysics ,medicine ,Pharmaceutical Science ,Molecular Medicine ,Vildagliptin ,Biochemistry ,medicine.drug - Abstract
Background: Vildagliptin is a drug for the treatment of diabetes. DPP-IV inhibitor represents a new class of oral antihyperglycemic agents to treat patients with type 2 diabetes. Several RP-HPLC methods have been reported to determine Vildagliptin alone. However, it has been noted that there are no available stability-indicating methods in pharmacopeias (USP/BP/EP/JP) nor in the available literature to quantify known and unknown impurity patterns for vildagliptin in vildagliptin tablets. Objective: The aim of this study is to develop a new single, sensitive, robust and specific gradient RP-HPLC method to quantify known and unknown impurities and degradants of Vildagliptin in Vildagliptin tablets. Methods: Chromatographic separation has been accomplished on the Hypersil ODS column (250 x 4.6) mm, 5 μm with a mobile phase consisting of a mixture of Perchloric acid Buffer, methanol, acetonitrile and Triethylamine delivered at a flow rate of 1.0 mL minute-1 and the detection wavelength 210 nm. The developed method was validated as per ICH guidelines. Results: Vildagliptin was found degraded significantly under oxidative and alkaline stress conditions. The degradation products were well resolved from Vildagliptin and its impurities. An analytical method was found linear, accurate and precise from LOQ (Limit of Quantification) level to 150% of impurity specification limit (0.5%). Conclusion: The method found sensitive, rapid and accurate quantification of known, unknown impurities and degradants. The peak purity results confirmed that the Vildagliptin peak was homogeneous and pure in all stress samples, thus proving the stability-indicating nature of the method.
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- 2021
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16. Physical Exertion Detection (Using Machine Learning and IOT)
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Nandini Sunil Mutha, Rutuja Shatrughna Mandhare, Devyani Nitin Mahajan, Omkar Rajesh Dukare, and Tejal. H. Patil
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With the advancement of technology, we are able to use Arduino in this project to digitally sense body temperature and heart rate. Arduino is primarily used because it has the ability to perceive its surroundings by receiving data from various sensors and change it by controlling lights, motors and other actuators. Arduino programming language is used to program the microcontroller of the board. The goal of this work is to develop a system that can remotely monitor body temperature and heart rate in real time with the measurement results displayed on a web server. This research involves a number of phases, including the generation of research hypotheses based on literature reviews and the design of a hardware and software system.
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- 2022
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17. ANALYTICAL METHOD DEVELOPMENT AND VALIDATION FOR KNOWN AND UNKNOWN IMPURITIES PROFILING FOR CARVEDILOL PHARMACEUTICAL DOSAGE FORM (TABLETS)
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Mazahar Farooqui, Suparna Deshmukh, and Nitin Mahajan
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Profiling (computer programming) ,Chromatography ,Chemistry ,medicine ,Pharmaceutical Science ,Method development ,Carvedilol ,Dosage form ,medicine.drug - Abstract
Objective: The aim of the research work to develop a simple, sensitive, rugged, robust and specific novel gradient stability indicating reverse phase HPLC method for quantitative determination of known and unknown impurities profiling of Carvedilol pharmaceutical dosage forms (Tablets). Methods: Chromatographic separation has been achieved on an Inertsil ODS 3V column (150 mm x 4.6 mm, 5μm) with mobile phase consisting Mobile phase-A (Water, Acetonitrile and Trifluroacetic acid in the ratio of 80:20:0.1 v/v/v respectively and pH adjusted to 2.0 with dilute potassium hydroxide solution) and Mobile phase-B (Water and acetonitrile in the ratio of 100:900 v/v respectively) delivered at flow rate of 1.0 ml min-1 and the detection wavelength 240 nm. The column compartment temperature maintained at 40 °C. Results: Resolution between Carvedilol and its impurities has been achieved greater than 1.5. The developed method was validated as per ICH guidelines. Analytical method found Precise, Linear, accurate, specific, rugged and robust. Conclusion: Developed and validated novel analytical method can be used to for impurity profile analysis of Carvedilol Pharmaceutical dosage form (Tablets).
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- 2021
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18. A novel stability-indicating method for known and unknown impurities profiling for diltiazem hydrochloride pharmaceutical dosage form (tablets)
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Mazahar Farooqui, Nitin Mahajan, and Suparna Deshmukh
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Chromatography ,Correlation coefficient ,Method validation ,Method development ,RM1-950 ,Dosage form ,Working range ,RS1-441 ,chemistry.chemical_compound ,Stability indicating ,Pharmacy and materia medica ,chemistry ,Impurity ,Impurities profiling ,Forced degradation ,Diltiazem hydrochloride ,Methanol ,Therapeutics. Pharmacology ,Acetonitrile - Abstract
Background A novel gradient, high-sensitive and specific stability-indicating reverse-phase HPLC method was developed and validated for quantitative purpose of known, unknown and degradant impurities profiling for diltiazem hydrochloride tablets. The impurities were separated on the Zorbax RX C8 column (150 mm × 4.6 mm, 5 μm) with mobile phase-A consisting of a mixture of 0.05 M sodium dihydrogen phosphate monohydrate buffer pH 3.0 and methanol in the ratio 800:200v/v and mobile phase-B consisting of acetonitrile with a flow rate of 1.0 mL min−1. The column compartment was maintained at 35 °C, and the detection wavelength was 240 nm. Diltiazem hydrochloride, its known impurities and unknown impurities have been well resolved from each other. Results The linearity of the method has been demonstrated across the concentration range of 0.18 to 5.65 µg mL−1 for EP impurity-F with correlation coefficient R2 greater than 0.99. Recovery of method was proved from LOQ to 150% for known and unknown impurities with respect to test concentration and found in between 80 and 120%. Forced degradation study and specificity experiment results with mass balance proved the stability-indicating nature of the method and separated all known, unknown impurities and degradants from each other as well as from main drug component (diltiazem hydrochloride). The mass balance for stress study was found in between 95 and 105%. Conclusion Newly developed analytical method was validated as per ICH Q2 (R1) guidelines “Validation of analytical procedure” and found linear, accurate, specific, robust and precise in the established working range.
- Published
- 2021
19. 195 Characterization of WU-NK-101, a feeder cell-free expanded allogeneic memory NK cell product with potent anti-tumor activity
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Laura Arthur, Mary Mathyer, Celeste Dufour, Bryan Cruz, Melissa Berrien-Elliot, Mark Foster, Nitin Mahajan, Alun Carter, Matthew Cooper, and Ryan Sullivan
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- 2022
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20. C10Pred: A First Machine Learning Based Tool to Predict C10 Family Cysteine Peptidases Using Sequence-Derived Features
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Adeel Malik, Nitin Mahajan, Tanveer Ali Dar, and Chang-Bae Kim
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Support Vector Machine ,C10 family ,cysteine peptidase ,streptopain ,machine learning ,support vector machine ,feature selection ,Boruta ,Organic Chemistry ,Proteins ,General Medicine ,Catalysis ,Computer Science Applications ,Machine Learning ,Inorganic Chemistry ,Cysteine Proteases ,Cysteine ,Physical and Theoretical Chemistry ,Molecular Biology ,Spectroscopy - Abstract
Streptococcus pyogenes, or group A Streptococcus (GAS), a gram-positive bacterium, is implicated in a wide range of clinical manifestations and life-threatening diseases. One of the key virulence factors of GAS is streptopain, a C10 family cysteine peptidase. Since its discovery, various homologs of streptopain have been reported from other bacterial species. With the increased affordability of sequencing, a significant increase in the number of potential C10 family-like sequences in the public databases is anticipated, posing a challenge in classifying such sequences. Sequence-similarity-based tools are the methods of choice to identify such streptopain-like sequences. However, these methods depend on some level of sequence similarity between the existing C10 family and the target sequences. Therefore, in this work, we propose a novel predictor, C10Pred, for the prediction of C10 peptidases using sequence-derived optimal features. C10Pred is a support vector machine (SVM) based model which is efficient in predicting C10 enzymes with an overall accuracy of 92.7% and Matthews’ correlation coefficient (MCC) value of 0.855 when tested on an independent dataset. We anticipate that C10Pred will serve as a handy tool to classify novel streptopain-like proteins belonging to the C10 family and offer essential information.
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- 2022
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21. The toxicological effects of lead and its analytical trends: an update from 2000 to 2018
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Ketan Hatware, Kiran Kumari Patil, Sanjay Sharma, Nikhil Nitin Mahajan, and Eswar Sairam Ravipati
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Spectrum Analysis ,010401 analytical chemistry ,Fluorescence spectrometry ,Metal toxicity ,Heavy metals ,02 engineering and technology ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,Analytical Chemistry ,Lead (geology) ,Lead ,Pharmaceutical Preparations ,Hazardous waste ,Animals ,Humans ,Environmental science ,Day to day ,0210 nano-technology ,Environmental planning ,Life Scientists - Abstract
In every developed and developing country, the major facing problem is heavy metals toxicity. Due to there is an increase in the heavy metals anthropogenic in day to day life by various factors, which are causing serious issues or harmful health hazardous for all types of living organisms. Moreover, they are present everywhere in the universe it causes the contamination of the food, dietary, and processed materials. Accordingly, the present review article further summarizes the studies related to the determination of lead as a toxic impurity with a total of 134 references in the period 2000 to 2018. In this write-up, emphasize the one of the highly toxic heavy metal element Lead (Pb) and it's toxicity in the animals, humans, plants, and aquatic systems. In addition, the purpose of this article is to evaluate the effectiveness of established analytical techniques and trends in analytical methods like AAS; ICP-OES; ICP-MS; ASV; X-ray fluorescence spectrometry, these techniques significantly applicable for the quantitative analysis of Pb in various sources. The various regulatory authorities for Pb throughout the globe like IOSH, EPA, EMA, and CDCSO. This reveals the need and scope of further research in the field of heavy metal toxicity and development of new analytical techniques in meeting the needs of the life scientists. The present comprehensive review is an attempt to transform the state of knowledge into the findings that may act as a guideline for all the interested groups at different levels.
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- 2019
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22. The snoRNA target of t(4;14) in multiple myeloma regulates ribosome biogenesis
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Kyusik Q. Kim, Leonard B. Maggi, Michael H. Tomasson, Melissa L. Bates, Vanessa De Oliveira, Hani S. Zaher, Chakrapani Tripathi, and Nitin Mahajan
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Cancer Research ,protein synthesis ,Physiology ,Nucleolus ,Ribosome biogenesis ,Biochemistry, Genetics and Molecular Biology (miscellaneous) ,Ribosome ,chromosomal translocation ,03 medical and health sciences ,0302 clinical medicine ,Downregulation and upregulation ,medicine ,Protein biosynthesis ,Small nucleolar RNA ,lcsh:QH301-705.5 ,Research Articles ,030304 developmental biology ,reactive oxygen species ,0303 health sciences ,hematological malignancy ,Cell growth ,Chemistry ,3. Good health ,Cell biology ,lcsh:Biology (General) ,030220 oncology & carcinogenesis ,Proteasome inhibitor ,Molecular Medicine ,medicine.drug ,Research Article - Abstract
The orphan small nucleolar RNA (snoRNA) ACA11 is overexpressed as a result of the t(4;14) chromosomal translocation in multiple myeloma (MM), increases reactive oxygen species, and drives cell proliferation. Like other snoRNAs, ACA11 is predominantly localized to a sub‐nuclear organelle, the nucleolus. We hypothesized that increased ACA11 expression would increase ribosome biogenesis and protein synthesis. We found that ACA11 overexpression in MM cells increased nucleolar area and number as well as argyrophilic nuclear organizing regions (AgNORs). Supporting these data, samples from t(4;14)‐positive patients had higher AgNORs scores than t(4;14)‐negative samples. ACA11 also upregulated ribosome production, pre‐47S rRNA synthesis, and protein synthesis in a ROS‐dependent manner. Lastly, ACA11 overexpression enhanced the response to proteasome inhibitor in MM cells, while no effect was found in response to high doses of melphalan. Together, these data demonstrate that ACA11 stimulates ribosome biogenesis and influences responses to chemotherapy. ACA11 may be a useful target to individualize the treatment for t(4;14)‐positive myeloma patients.
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- 2019
23. Humanized zebrafish enhance human hematopoietic stem cell survival and promote acute myeloid leukemia clonal diversity
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Nicole Melong, Clinton J. V. Campbell, Troy C. Lund, Wing Hing Wong, Todd E. Druley, Nitin Mahajan, Benjamin King, Vinothkumar Rajan, R. Spencer Tong, David Rittenberg, Daniel Gaston, Jason N. Berman, and Graham Dellaire
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0301 basic medicine ,biology ,Xenotransplantation ,medicine.medical_treatment ,Hematopoietic stem cell ,Myeloid leukemia ,Hematology ,biology.organism_classification ,medicine.disease ,Article ,03 medical and health sciences ,Leukemia ,Haematopoiesis ,030104 developmental biology ,0302 clinical medicine ,medicine.anatomical_structure ,medicine ,Cancer research ,Progenitor cell ,Zebrafish ,030215 immunology ,Homing (hematopoietic) - Abstract
Xenograft models are invaluable tools in establishing the current paradigms of hematopoiesis and leukemogenesis. The zebrafish has emerged as a robust alternative xenograft model but, like mice, lacks specific cytokines that mimic the microenvironment found in human patients. To address this critical gap, we generated the first “humanized” zebrafish that expresses human hematopoietic-specific cytokines (granulocyte-monocyte colony-stimulating factor, stem cell factor, and stromal cell-derived factor 1α). Termed GSS fish, these zebrafish promote survival, self-renewal and multilineage differentiation of human hematopoietic stem and progenitor cells and result in enhanced proliferation and hematopoietic niche-specific homing of primary human leukemia cells. Using error-corrected RNA sequencing, we determined that patient-derived leukemias transplanted into GSS zebrafish exhibit broader clonal representation compared to transplants into control hosts. GSS zebrafish incorporating error-corrected RNA sequencing establish a new standard for zebrafish xenotransplantation which more accurately recapitulates the human context, providing a more representative cost-effective preclinical model system for evaluating personalized response-based treatment in leukemia and therapies to expand human hematopoietic stem and progenitor cells in the transplant setting.
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- 2020
24. Maspin binds to cardiolipin in mitochondria and triggers apoptosis
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Douglas B. Weibel, Manohary Rajendram, Brandon M. Hoover, Heidi Y. Shi, Ming Zhang, Nitin Mahajan, and Kiyoshi Kawasaki
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0301 basic medicine ,Cytochrome ,Cardiolipins ,Apoptosis ,CHO Cells ,Mitochondrion ,Biochemistry ,Mice ,03 medical and health sciences ,chemistry.chemical_compound ,Cricetulus ,0302 clinical medicine ,Genetics ,Cardiolipin ,Animals ,Inner mitochondrial membrane ,Molecular Biology ,Serpins ,biology ,Chemistry ,Research ,Cytochrome c ,Maspin ,Cytochromes c ,Mitochondria ,Cell biology ,030104 developmental biology ,Mitochondrial Membranes ,biology.protein ,Cardiolipin binding ,lipids (amino acids, peptides, and proteins) ,030217 neurology & neurosurgery ,Protein Binding ,Biotechnology - Abstract
A central question in cell biology is how cells respond to stress signals and biochemically regulate apoptosis. One critical pathway involves the change of mitochondrial function and release of cytochrome c to initiate apoptosis. In response to apoptotic stimuli, we found that maspin—a noninhibitory member of the serine protease inhibitor superfamily—translocates from the cytosol to mitochondria and binds to cardiolipin in the inner mitochondrial membrane. Biolayer interferometry assay revealed that recombinant maspin binds cardiolipin with an apparent K(d),of ∼15.8 μM and competes with cytochrome c (apparent K(d) of ∼1.31 μM) for binding to cardiolipin-enriched membranes. A hydrophobic, lysine-rich domain in maspin consists of 27 aa, is located at position 268–294, and is responsible for the interaction of this protein with cardiolipin. Depletion of cardiolipin in cells significantly prevents maspin binding to the inner mitochondrial membrane and decreases cytochrome c release and apoptosis. Alteration to maspin’s cardiolipin binding domain changes its ability to bind cardiolipin, and tumor cells expressing this mutant have a low frequency of apoptosis. We propose a model of apoptosis in which maspin binds to cardiolipin, displaces cytochrome c from the membrane, and facilitates its release to the cytoplasm.—Mahajan, N., Hoover, B., Rajendram, M., Shi, H. Y., Kawasaki, K., Weibel, D. B., Zhang, M. Maspin binds to cardiolipin in mitochondria and triggers apoptosis.
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- 2019
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25. Error-corrected sequencing strategies enable comprehensive detection of leukemic mutations relevant for diagnosis and minimal residual disease monitoring
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Todd E. Druley, Nitin Mahajan, Wing Hing Wong, Sonali P. Barwe, Anilkumar Gopalakrishnapillai, E. Anders Kolb, and Erin L. Crowgey
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0301 basic medicine ,Male ,lcsh:Internal medicine ,Neoplasm, Residual ,lcsh:QH426-470 ,Adolescent ,Computational biology ,Biology ,DNA sequencing ,03 medical and health sciences ,Exon ,Error-corrected sequencing ,0302 clinical medicine ,Next generation sequencing ,Cell Line, Tumor ,Genetics ,medicine ,Humans ,Digital polymerase chain reaction ,Pediatric leukemia ,lcsh:RC31-1245 ,Child ,Gene ,Genetics (clinical) ,Leukemia ,medicine.diagnostic_test ,Minimal residual disease ,Intron ,High-Throughput Nucleotide Sequencing ,Amplicon ,lcsh:Genetics ,030104 developmental biology ,030220 oncology & carcinogenesis ,Mutation ,Female ,Fluorescence in situ hybridization ,Research Article - Abstract
Background Pediatric leukemias have a diverse genomic landscape associated with complex structural variants, including gene fusions, insertions and deletions, and single nucleotide variants. Routine karyotype and fluorescence in situ hybridization (FISH) techniques lack sensitivity for smaller genomic alternations. Next-generation sequencing (NGS) assays are being increasingly utilized for assessment of these various lesions. However, standard NGS lacks quantitative sensitivity for minimal residual disease (MRD) surveillance due to an inherently high error rate. Methods Primary bone marrow samples from pediatric leukemia (n = 32) and adult leukemia subjects (n = 5), cell line MV4–11, and an umbilical cord sample were utilized for this study. Samples were sequenced using molecular barcoding with targeted DNA and RNA library enrichment techniques based on anchored multiplexed PCR (AMP®) technology, amplicon based error-corrected sequencing (ECS) or a human cancer transcriptome assay. Computational analyses were performed to quantitatively assess limit of detection (LOD) for various DNA and RNA lesions, which could be systematically used for MRD assays. Results Matched leukemia patient samples were analyzed at three time points; diagnosis, end of induction (EOI), and relapse. Similar to flow cytometry for ALL MRD, the LOD for point mutations by these sequencing strategies was ≥0.001. For DNA structural variants, FLT3 internal tandem duplication (ITD) positive cell line and patient samples showed a LOD of ≥0.001 in addition to previously unknown copy number losses in leukemia genes. ECS in RNA identified multiple novel gene fusions, including a SPANT-ABL gene fusion in an ALL patient, which could have been used to alter therapy. Collectively, ECS for RNA demonstrated a quantitative and complex landscape of RNA molecules with 12% of the molecules representing gene fusions, 12% exon duplications, 8% exon deletions, and 68% with retained introns. Droplet digital PCR validation of ECS-RNA confirmed results to single mRNA molecule quantities. Conclusions Collectively, these assays enable a highly sensitive, comprehensive, and simultaneous analysis of various clonal leukemic mutations, which can be tracked across disease states (diagnosis, EOI, and relapse) with a high degree of sensitivity. The approaches and results presented here highlight the ability to use NGS for MRD tracking.
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- 2020
26. Strong concordance between RNA structural and single nucleotide variants identified via next generation sequencing techniques in primary pediatric leukemia and patient-derived xenograft samples
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Todd E. Druley, E. Anders Kolb, Sonali P. Barwe, Nitin Mahajan, Anilkumar Gopalakrisnapillai, and Erin L. Crowgey
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endocrine system ,lcsh:QH426-470 ,Concordance ,Health Informatics ,Genomics ,Computational biology ,Disease ,Biology ,patient derived xenograft models ,DNA sequencing ,03 medical and health sciences ,0302 clinical medicine ,pediatric cancers ,Genetics ,genomics ,Allele ,Gene ,Ecology, Evolution, Behavior and Systematics ,030304 developmental biology ,error-corrected sequencing ,0303 health sciences ,Acute leukemia ,RNA ,structural variants ,lcsh:Genetics ,030220 oncology & carcinogenesis ,Original Article - Abstract
Acute leukemia represents the most common pediatric malignancy comprising diverse subtypes with varying prognosis and treatment outcomes. New and targeted treatment options are warranted for this disease. Patient-derived xenograft (PDX) models are increasingly being used for preclinical testing of novel treatment modalities. A novel approach involving targeted error-corrected RNA sequencing using ArcherDX HemeV2 kit was employed to compare 25 primary pediatric acute leukemia samples and their corresponding PDX samples. A comparison of the primary samples and PDX samples revealed a high concordance between single nucleotide variants and gene fusions whereas other complex structural variants were not as consistent. The presence of gene fusions representing the major driver mutations at similar allelic frequencies in PDX samples compared to primary samples and over multiple passages confirms the utility of PDX models for preclinical drug testing. Characterization and tracking of these novel cryptic fusions and exonal variants in PDX models is critical in assessing response to potential new therapies.
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- 2020
27. Characterization of WU-CART-007, an Allogeneic CD7-Targeted CAR-T Cell Therapy for T-Cell Malignancies
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Pooja Vinay, Rachel Langland, Jennifer Govero, Nitin Mahajan, Anna Ballard, Andrew Martens, Liz Schwarzkopf, Tom Leedom, David H. Spencer, Somayeh Pouyanfard, Andrew Espenschied, Alexander S. Hamil, Kenneth M Chrobak, Matthew L. Cooper, Ayman Kabakibi, and Michael R. James
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Cart ,medicine.anatomical_structure ,business.industry ,hemic and lymphatic diseases ,T cell ,Immunology ,Cancer research ,Medicine ,CAR T-cell therapy ,Cell Biology ,Hematology ,business ,Biochemistry - Abstract
Background T-cell Acute Lymphoblastic Leukemia (T-ALL) / Lymphoblastic Lymphoma (LBL) represent a class of devastating hematologic cancers with high rates of relapse and mortality in both children and adults. Development of CAR-T cell therapies for T-cell cancers has been complicated by induction of fratricide and the high risk of malignant cell contamination of the drug product in the autologous setting. Previously, Cooper et. al., demonstrated that CRISPR/Cas9 gene-editing to delete CD7 prevented self-killing, and deletion of the T-cell receptor alpha constant (TRAC) enabled the use of healthy donor-derived T-cells to manufacture CD7-targeted CAR-T cells without risk of malignancy and mitigating the risk of GvHD. Here we present preclinical data supporting the safety and efficacy of WU-CART-007, an IND ready, off-the-shelf, and fratricide resistant CD7-targeted CAR-T cell for the treatment of CD7+ T-cell malignancies. Methods WU-CART-007 was manufactured using T cells isolated from healthy donors by deletion of CD7 and TRAC, followed by CAR transduction, cell expansion, depletion of residual TCRa/b+ cells and cryopreservation. Donors were confirmed negative for a panel of adventitious viruses. CD7/TRAC deletion and CAR transduction were confirmed by flow cytometry. Off-target editing profile was assessed by GUIDE-Seq. The binding kinetics to human CD7 were conducted by bio-layer interferometry and CD7 selectivity was confirmed by cell microarray with a library of HEK-293 cells expressing approximately 6000 human proteins. The in vitro activity of WU-CART-007 was interrogated by co-culture with human CD7+ CCRF-CEM T-ALL cells and the potential on-target, off-tumor activity was assessed by co-culture with a panel of immune and non-immune primary human cells. In vivo anti-tumor functionality was confirmed in immunocompromised NSG mice after the establishment of low or high tumor burden CCRF-CEM xenografts engineered to express green fluorescent protein (GFP) and click beetle red (CBR) luciferase. The impact of WU-CART-007 on normal hematopoiesis was assessed using CD34+ humanized NCG mice. Results Several successful full-scale manufacturing runs were completed with consistently high dual CD7/TRAC deletion, transduction efficiency, and cell viability. Drug product was primarily composed of a T cell memory phenotype. Off- target nuclease analysis by GUIDE-seq and targeted NGS confirmed no evidence of off-target editing events. The WU-CART-007 scFv exhibited high affinity and exquisite specificity for human CD7. In vitro co-incubation experiments confirmed strong cytotoxicity against CD7-expressing cells including CCRF-CEM T-ALL cells, primary T and NK cells, but not CD7- cells such as myeloid cells, B cells, hepatocytes, astrocytes, cardiomyocytes, epithelial cells, and endothelial cells. Importantly, no cytotoxicity was observed against hematopoietic progenitor cells in human bone marrow or cord blood following co-incubation with WU-CART-007. Similarly, WU-CART-007 treatment of a non-tumor bearing humanized mouse model resulted in transient reductions in CD7+ cells (T-cells and NK cells) but not CD7- cells (myeloid and B cells), and the impacted cells recovered after circulating WU-CART-007 cells were no longer detectable. Assessment of in vivo anti-tumor efficacy revealed that WU-CART-007 effectively inhibited tumor progression (>99% TGI) in both low and high burden CCRF-CEM tumor models and improved survival in a dose-dependent manner, while CAR- cells were inactive, confirming CD7-dependent activity. Conclusions These preclinical studies support the use of WU-CART-007 in clinical trials and highlight the potential of WU-CART-007 to be a well-tolerated and active therapy for patients with CD7+ T-cell malignancies. A first in human Phase 1/2 trial in patients with R/R T-ALL/LBL is currently open for enrollment (NCT# 04984356). Disclosures No relevant conflicts of interest to declare.
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- 2021
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28. Gender differences in the management of acute coronary syndrome patients: One year results from HPIAR (HP-India ACS Registry)
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Prakash Chand Negi, Rajeev Merwaha, Sanjeev Asotra, Kunal Mahajan, Nitin Mahajan, and Vivek Chauhan
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Male ,Rural Population ,Acute coronary syndrome ,Pediatrics ,medicine.medical_specialty ,Multivariate analysis ,Population ,India ,030204 cardiovascular system & hematology ,03 medical and health sciences ,Sex Factors ,0302 clinical medicine ,medicine ,Humans ,Registries ,030212 general & internal medicine ,Acute Coronary Syndrome ,education ,Aged ,Retrospective Studies ,education.field_of_study ,Management of acute coronary syndrome ,business.industry ,Mortality rate ,Disease Management ,Odds ratio ,Guideline ,Middle Aged ,medicine.disease ,Hospitalization ,Conventional PCI ,Female ,Cardiology and Cardiovascular Medicine ,business ,Demography - Abstract
Data from high-income countries suggest that women receive less intensive diagnostic and therapeutic management than men for acute coronary syndrome (ACS). There is a paucity of such data in the Indian population, which is 69% rural and prior studies focused mostly on urban populations. The objective of the present study was to identify the gender based differences in ACS management, if any, in a predominantly rural population.Data from 35 hospitals across Himachal Pradesh covering90% of state population were collected for one year (July 2015-June 2016). A total of 2118 ACS subjects met inclusion criteria and baseline characteristics, in-hospital treatments and mortality rates were analyzed.Women constituted less than one-third of ACS population. Women were older compared to men and were more likely to present with NSTEMI/UA. Misinterpretation of initial symptoms and late presentation were also common in women. Fewer women received optimal guideline based treatment and PCI (0.9% vs 4.2%, p0.01). Compare to men, women more often had Killip class1 (27.3% vs 20.4%, p0.01) and higher in-hospital mortality (8.5% vs 5.6%, p=0.009). On multivariate analysis the association between female gender and mortality was attenuated (adjusted odds ratio [OR]=1.36 [0.77-2.38]).The present study from India, is the first of its kind to evaluate the gender based differences among ACS patients, in a predominantly rural population. Our analysis demonstrates a significant gender based difference between symptom awareness and delay in presentation, management and in-hospital outcome. Further studies are warranted across other parts of country to investigate this gender disparity.
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- 2017
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29. Usefulness of the Mitral Regurgitation Severity Index to Assess the Severity of Chronic Mitral Regurgitation
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Vikas Veeranna, Hammam Zmily, Sandip Zalawadiya, Alexandros Briasoulis, Tesfaye Telila, Issa Alesh, Emmanuel Akintoye, Nitin Mahajan, Anas Alani, Luis Afonso, Ashraf Mostafa, and Mohamed Shokr
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Male ,medicine.medical_specialty ,030204 cardiovascular system & hematology ,Severity of Illness Index ,03 medical and health sciences ,0302 clinical medicine ,Predictive Value of Tests ,Mitral valve ,Internal medicine ,Severity of illness ,Humans ,Medicine ,030212 general & internal medicine ,Retrospective Studies ,Mitral regurgitation ,Reproducibility ,business.industry ,Mitral Valve Insufficiency ,Reproducibility of Results ,Retrospective cohort study ,Middle Aged ,Confidence interval ,Echocardiography, Doppler, Color ,medicine.anatomical_structure ,ROC Curve ,Ventricle ,Predictive value of tests ,Chronic Disease ,Cardiology ,Mitral Valve ,Female ,Cardiology and Cardiovascular Medicine ,business ,Blood Flow Velocity ,Echocardiography, Transesophageal ,Follow-Up Studies - Abstract
Existing metrics for grading mitral regurgitation (MR) are limited and fraught with high interobserver variability. We developed and evaluated a Doppler-based, semiquantitative novel index (Mitral Regurgitation Severity Index [MRSI]) of MR severity. In a total of 125 patients (70 in the derivation cohort and 55 in the validation cohort), MRSI was calculated as a ratio of time velocity integral of mitral inflow (continuous-wave Doppler-TVI MV) to the time velocity integral of the left ventricle outflow (pulse-wave Doppler-TVI LVOT). Inter-rater agreement for MRSI and predictive ability of the MRSI were then assessed. In the derivation cohort, MRSI differed significantly between patients with severe MR (2.6 ± 0.51) and mild-moderate (nonsevere) MR (1.4 ± 0.18) and a cutoff of ≥1.8 was associated with optimal diagnostic accuracy. In the validation cohort, MRSI exhibited excellent agreement between a level II and a level III reader with a mean difference of -0.14 (95% confidence limit of agreement: -0.80 to 0.53), correlation coefficient of 0.88 (p
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- 2017
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30. Sabotaging of the oxidative stress response by an oncogenic noncoding RNA
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Richard L. Bennett, Jonathan D. Licht, Hua-Jun Wu, Leonard B. Maggi, Jason D. Weber, Michael H. Tomasson, Catalina Troche, and Nitin Mahajan
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0301 basic medicine ,RNA, Untranslated ,NF-E2-Related Factor 2 ,medicine.disease_cause ,Biochemistry ,Mice ,03 medical and health sciences ,Cell Line, Tumor ,Genetics ,Transcriptional regulation ,medicine ,Animals ,Humans ,Molecular Biology ,Cells, Cultured ,Cell Proliferation ,Messenger RNA ,Cell growth ,Chemistry ,Research ,Intron ,RNA ,Oncogenes ,Fibroblasts ,Non-coding RNA ,Molecular biology ,Oxidative Stress ,030104 developmental biology ,Gene Expression Regulation ,Cancer cell ,Multiple Myeloma ,Reactive Oxygen Species ,Oxidative stress ,Biotechnology - Abstract
Overexpression of the multiple myeloma set domain (MMSET) Wolf-Hirschhorn syndrome candidate 1 gene, which contains an orphan box H/ACA class small nucleolar RNA, ACA11, in an intron, is associated with several cancer types, including multiple myeloma (MM). ACA11 and MMSET are overexpressed cotranscriptionally as a result of the t(4;14) chromosomal translocation in a subset of patients with MM. RNA sequencing of CD138+ tumor cells from t(4;14)-positive and -negative MM patient bone marrow samples revealed an enhanced oxidative phosphorylation mRNA signature. Supporting these data, ACA11 overexpression in a t(4;14)-negative MM cell line, MM1.S, demonstrated enhanced reactive oxygen species (ROS) levels. In addition, an enhancement of cell proliferation, increased soft agar colony size, and elevated ERK1/2 phosphorylation were observed. This ACA11-driven hyperproliferative phenotype depended on increased ROS levels as exogenously added antioxidants attenuate the increased proliferation. A major transcriptional regulator of the cellular antioxidant response, nuclear factor (erythroid-derived 2)-like 2 (NRF2), shuttled to the nucleus, as expected, in response to ACA11-driven increases in ROS; however, transcriptional up-regulation of some of NRF2’s antioxidant target genes was abrogated in the presence of ACA11 overexpression. These data show for the first time that ACA11 promotes proliferation through inhibition of NRF2 function resulting in sustained ROS levels driving cancer cell proliferation.—Mahajan, N., Wu, H.-J., Bennett, R. L., Troche, C., Licht, J. D., Weber, J. D., Maggi, L. B., Jr., Tomasson, M. H. Sabotaging of the oxidative stress response by an oncogenic noncoding RNA.
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- 2016
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31. Collaborative Control of Cell Cycle Progression by the RNA Exonuclease Dis3 and Ras Is Conserved Across Species
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Swathi Arur, Julie O'Neal, Beth A. Wilson, Nitin Mahajan, William C. Wilson, Yi Zhu, James B. Skeath, Mark J. Snee, Cedric Kseib, Michael H. Tomasson, and Shin Yu Chen
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0301 basic medicine ,Exonuclease ,Cell division ,Investigations ,Evolution, Molecular ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Schizosaccharomyces ,Genetics ,Animals ,Caenorhabditis elegans ,Mitosis ,Cells, Cultured ,Cyclin-dependent kinase 1 ,Exosome Multienzyme Ribonuclease Complex ,biology ,Cell growth ,Cell Cycle ,Cell cycle ,biology.organism_classification ,Molecular biology ,Mice, Inbred C57BL ,030104 developmental biology ,Schizosaccharomyces pombe ,ras Proteins ,biology.protein ,Drosophila ,030217 neurology & neurosurgery - Abstract
Dis3 encodes a conserved RNase that degrades or processes all RNA species via an N-terminal PilT N terminus (PIN) domain and C-terminal RNB domain that harbor, respectively, endonuclease activity and 3′–5′ exonuclease activity. In Schizosaccharomyces pombe, dis3 mutations cause chromosome missegregation and failure in mitosis, suggesting dis3 promotes cell division. In humans, apparently hypomorphic dis3 mutations are found recurrently in multiple myeloma, suggesting dis3 opposes cell division. Except for the observation that RNAi-mediated depletion of dis3 function drives larval arrest and reduces tissue growth in Drosophila, the role of dis3 has not been rigorously explored in higher eukaryotic systems. Using the Drosophila system and newly generated dis3 null alleles, we find that absence of dis3 activity inhibits cell division. We uncover a conserved CDK1 phosphorylation site that when phosphorylated inhibits Dis3’s exonuclease, but not endonuclease, activity. Leveraging this information, we show that Dis3’s exonuclease function is required for mitotic cell division: in its absence, cells are delayed in mitosis and exhibit aneuploidy and overcondensed chromosomes. In contrast, we find that modest reduction of dis3 function enhances cell proliferation in the presence of elevated Ras activity, apparently by accelerating cells through G2/M even though each insult by itself delays G2/M. Additionally, we find that dis3 and ras genetically interact in worms and that dis3 can enhance cell proliferation under growth stimulatory conditions in murine B cells. Thus, reduction, but not absence, of dis3 activity can enhance cell proliferation in higher organisms.
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- 2016
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32. Advancements in Next-Generation Sequencing for Detecting Minimal Residual Disease
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Nitin Mahajan and Erin L. Crowgey
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Disease severity ,Genomics ,Disease ,Computational biology ,Biology ,Residual ,Genome ,Minimal residual disease ,DNA sequencing - Abstract
For decades, cytogenetic markers have played a major role in the diagnosis and classification of pediatric and adult cancers. However, many chromosomal lesions less than 50,000 base pairs (bp) are not typically detected by traditional cytogenetic studies, and these alterations are currently an area of active focus to determine the relationship with disease severity and outcome. Recent advancements in DNA sequencing technology have aided in our ability to detect numerous genomic alterations, ranging from a single-nucleotide to chromosomal-scale lesions, from a single genome. However, the routine implementation of sequencing-based strategies for the detection of minimal residual disease (MRD) has been limited because of the inherent error rate of the NGS platforms. With error rates of 0.5–2.0%, the ability to detect clinical significant remaining disease at lesser frequencies is limited. However, a variety of strategies and platforms are rapidly advancing, which will enable sequencing with the sensitivity and specificity to not only detect very rare levels of refractory or residual disease but also guide oncologists in precision therapeutic selection. This chapter details key considerations, limitations, and advancements in next-generation sequencing technologies, with a focus on error-corrected sequencing using unique molecular indexing, in the application of accurately detecting minimal residual disease.
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- 2018
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33. Introduction
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Nitin Mahajan and Todd E. Druley
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- 2018
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34. A Study on Real Driving Emissions for India - An Experimental Approach
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Himanshu Dinodia, Nitin Mahajan, Vipin Dwivedi, and Vikram Khanna
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Environmental science - Published
- 2018
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35. Comparison of right ventricular contractile abnormalities in hypertrophic cardiomyopathy versus hypertensive heart disease using two dimensional strain imaging: a cross-sectional study
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Ashok Kondur, Nitin Mahajan, Alex Briasoulis, Shaun Cardozo, Fayez Siddiqui, Luis Afonso, Sabeeh Siddiqui, Anupama Kottam, and Issa Alesh
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Adult ,Male ,medicine.medical_specialty ,Cross-sectional study ,Ventricular Dysfunction, Right ,macromolecular substances ,Left ventricular hypertrophy ,Diagnosis, Differential ,Predictive Value of Tests ,Risk Factors ,Internal medicine ,Image Interpretation, Computer-Assisted ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,cardiovascular diseases ,Cardiac imaging ,Aged ,Retrospective Studies ,Observer Variation ,business.industry ,Hypertrophic cardiomyopathy ,Reproducibility of Results ,Cardiomyopathy, Hypertrophic ,Middle Aged ,medicine.disease ,Myocardial Contraction ,Hypertensive heart disease ,Echocardiography, Doppler, Color ,Cross-Sectional Studies ,medicine.anatomical_structure ,Ventricle ,Predictive value of tests ,Hypertension ,Two dimensional strain ,Ventricular Function, Right ,cardiovascular system ,Cardiology ,Female ,Hypertrophy, Left Ventricular ,Cardiology and Cardiovascular Medicine ,business ,Software - Abstract
Hypertrophic cardiomyopathy (HCM) affects the right ventricle (RV) because of the anatomically hypertrophied septum and plausibly by extension of the myopathic process to the RV. We sought to investigate RV strain in patients with left ventricular hypertrophy secondary to either HCM or hypertension (H-LVH). Our cross-sectional study included 32 patients with HCM, 21 patients with H-LVH, and 11 healthy subjects, who were evaluated with transthoracic echocardiography. Using a dedicated software package, bi-dimensional acquisitions were analyzed to measure segmental longitudinal strain in apical views. Right ventricular global longitudinal strain (GLS) was calculated by averaging septal and right free wall strains. The HCM and H-LVH groups were comparable for age and demographic characteristics. Right ventricular tricuspid annular plane systolic excursion was not significantly different between HCM and H-LVH subjects. Moreover, RV GLS, septal and lateral RV myocardial strain were significantly impaired in patients with HCM (all p0.001). Regional and global RV strain parameters were not significantly impaired in H-LVH compared to healthy controls An RV GLS cut-off value of14.9% differentiated HCM and H-LVH with a 90% sensitivity and a 95% specificity (p0.001). RV strain parameters are impaired in patients with HCM. Assessment of two-dimensional RV strain parameters could help differentiate between HCM and H-LVH.
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- 2015
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36. Corrigendum to 'Gender differences in the management of acute coronary syndrome patients: One year results from HPIAR (HP -India ACS Registry)' [Int. J. Cardiol. 248 (2017) 1-6]
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Vivek Chauhan, Kunal Mahajan, Prakash Chand Negi, Nitin Mahajan, Sanjeev Asotra, and Rajeev Merwaha
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medicine.medical_specialty ,Management of acute coronary syndrome ,business.industry ,Internal medicine ,INT ,medicine ,Cardiology and Cardiovascular Medicine ,business - Published
- 2017
37. Clinical Characteristics, Complications, and Treatment Practices in Patients With RHD: 6-Year Results From HP-RHD Registry
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Prakash Chand, Negi, Kunal, Mahajan, Vivek, Rana, Sachin, Sondhi, Nitin, Mahajan, Sanjay, Rathour, Ritesh, Verma, Ashish, Dhiman, Munish, Dev, Shivani, Rao, Sanjeev, Asotra, Rajeev, Bhardwaj, Neeraj, Ganju, Arvind, Kandoria, Rajeev, Merwaha, Rajesh, Sharma, Nirmal, Kolte, Ravi, Kumar V, Prince Kumar, Paul, and Davinder Pal, Singh
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Adult ,Aged, 80 and over ,Time Factors ,Adolescent ,Heart Valve Diseases ,Rheumatic Heart Disease ,India ,Middle Aged ,Prognosis ,Young Adult ,Antirheumatic Agents ,Child, Preschool ,Prevalence ,Humans ,Prospective Studies ,Registries ,Child ,Aged ,Follow-Up Studies - Abstract
Despite the high prevalence of rheumatic heart disease (RHD) in developing countries such as India, data on characteristics, complications, and treatment practices are lacking. The HP-RHD (Himachal Pradesh Rheumatic Heart Disease) registry aimed at reporting these parameters in patients with RHD from a northern state of India.A total of 2,005 consecutive patients of RHD were enrolled over a period of 6 years (2011 to 2016) in the present study. The clinical characteristics, complications, and treatment practices were systematically recorded.The mean age for patients with RHD was 40.3 ± 14.3 (range 5 to 83 years). RHD predominantly affected females (72.3%) and population from rural background (92%). Multivalvular involvement was frequent (43.2%), mitral valve was the commonest affected valve (83.3%). The majority of the patients had moderate-to-severe valvular dysfunction (69.3%). Mitral and tricuspid valve involvement was more frequent in female subjects compared with more frequent aortic valve involvement in male subjects (p 0.001). The major adverse cardiovascular events were recorded in 23.4% patients at the time of registry and comprised mainly advanced heart failure (15.6%), peripheral embolism (4.1%), and stroke (3.9%). The independent risk determinants of major adverse cardiovascular events (were advanced age (odds ratio [OR]: 1.01; 95% confidence interval [CI]: 1.00-1.02), severe mitral stenosis (OR: 1.73; 95% CI: 1.34-2.20), severe tricuspid regurgitation (OR: 2.11; 95% CI: 1.48-3.02), presence of pulmonary artery hypertension (OR: 1.33; 95% CI: 1.04-1.69), and atrial fibrillation (OR: 1.64; 95% CI: 1.28-2.11). Evidence-based use of oral anticoagulant therapy was documented in 77.7% of high-risk patients. Only 28.5% of study population was receiving secondary prophylaxis.Complications in patients with RHD increase with age and worsening valvular dysfunction. Programs focused on early detection and evidence-based management will assist in improving outcomes.
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- 2017
38. Comparison of Patients With Peripartum Heart Failure and Normal (≥55%) Versus Low (<45%) Left Ventricular Ejection Fractions
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Kalyani Ballapuram, Prasad Gunasekaran, Mehrdad Toosi, Luis Afonso, Anupama Kottam, Natasha Purai Arora, Kim A. Williams, Teferi Y. Mitiku, Nitin Mahajan, and Deepti Bhandare
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Adult ,medicine.medical_specialty ,animal structures ,Peripartum cardiomyopathy ,Pregnancy Complications, Cardiovascular ,Ventricular Function, Left ,Young Adult ,Pregnancy ,Internal medicine ,Peripartum Period ,medicine ,Humans ,Left ventricular ejection ,reproductive and urinary physiology ,Retrospective Studies ,Ejection fraction ,business.industry ,Incidence ,Stroke Volume ,medicine.disease ,United States ,female genital diseases and pregnancy complications ,Echocardiography ,Heart failure ,Cardiology ,Female ,Cardiology and Cardiovascular Medicine ,business ,Follow-Up Studies ,Heart Failure, Systolic - Abstract
The current definition of peripartum cardiomyopathy (PC) is restricted to patients with left ventricular systolic dysfunction (ejection fraction [EF]45%). Data on peripartum heart failure (HF) with normal EF are sparse. We describe clinical characteristics of patients with normal (≥55%) and patients with low (45%) left ventricular ejection fractions (LVEFs). Electronic medical records (2006 to 2013) of our tertiary care center were retrospectively screened to identify peripartum HF with normal EF, defined as an entity meeting Framingham criteria for HF with symptom onset during the last month of pregnancy or up to 5 months after delivery and with an EF of ≥55%. Clinical characteristics, echocardiographic parameters, and outcomes of these patients were compared with age-matched control patients with traditionally defined PC (EF45%). A total of 25 patients with PC and EF≥55% were identified. Exclusion of hypertension (n=9), preeclampsia (n=1), and diabetes mellitus (n=2) yielded 13 patients with PC and EF≥55%. Age-matched patients with traditional PC (EF45%) constituted controls (n=16). Compared with patients with PC and low LVEF, patients with PC and normal LVEF had lower B-type natriuretic peptide levels, systolic and diastolic left ventricular dimensions, left atrial size, and incidence of decompensated HF during delivery (p0.05). Compared with historical age-matched controls, patients with normal LVEF exhibited attenuated E' mitral annular velocities. On follow-up, these patients were associated with a lower New York Heart Association functional class. In conclusion, peripartum HF with normal LVEF appears to be a distinct entity.
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- 2014
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39. Abstract LB-322: Identification of a novel fusion protein SPTAN1-ABL1 in a child with T-cell acute lymphoblastic leukemia: Functional characterization and therapeutic implications
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E. Anders Kolb, Darcy Hamill, Demetria Ruhl, Sonali P. Barwe, Erin L. Crowgey, Nitin Mahajan, Anilkumar Gopalakrisnapillai, and Todd E. Druley
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Cancer Research ,ABL ,Biology ,Fusion protein ,Fusion gene ,Dasatinib ,Exon ,Oncology ,Protein kinase domain ,hemic and lymphatic diseases ,Cancer research ,medicine ,Kinase activity ,Tyrosine kinase ,medicine.drug - Abstract
Precursor T-cell acute lymphoblastic leukemia (T-ALL) is a genetically heterogenous hematologic malignancy resulting from accumulation of molecular lesions in a multistep process. Although survival rates have improved considerably, event free survival for patients with T-ALL are generally inferior compared to B-cell ALL. Genetic alterations are important determinants of responsiveness to therapy and serve as targets for molecularly tailored therapies. More than 75 chimeric fusion genes have been reported in T-ALL, the majority of which encode factors involved in transcriptional regulation, while only a smaller percentage codes for tyrosine kinases. We report a case of relapsed T-ALL, despite low risk stratification at the time of diagnosis, harboring a novel fusion protein SPTAN1-ABL1. Primary bone marrow specimen collected at diagnosis was transplanted in NSG-B2m mice and propagated as a patient-derived xenograft (PDX) line. For transcriptomic characterization, RNA isolated from primary and PDX samples was subjected to error-corrected targeted next-generation sequencing using ArcherDX FusionPlex HemeV2 kit. Bioinformatics analysis identified the novel SPTAN1-ABL1 gene fusion in which exon 2 of SPTAN1 was fused with exon 4 of ABL1. This fusion was confirmed by Sanger sequencing. Translation of the fusion product sequence showed in-frame fusion leading to the generation of a chimeric protein containing N-terminal SPTAN1 and C-terminal ABL1 with intact kinase domain. SPTAN1 encodes non-erythryocytic-1-spectrin-alpha protein, an actin-binding protein, with N-terminal domain possessing oligomerization activity. Because oligomerization of ABL1 promotes its kinase activity, it is possible that SPTAN1-ABL1 possesses constitutive kinase activity. The full-length SPTAN1-ABL1 fusion protein was cloned in a mammalian expression vector and expressed in BaF3 cells. SPTAN1-ABL1 fusion was detected at similar allelic frequencies in primary and PDX samples indicating the concordance between the two. Furthermore, treatment of engrafted mice with dasatinib (Qd10, 5 mg/Kg, p.o.) significantly prolonged survival compared to untreated mice (n=5 each, P Citation Format: Anilkumar Gopalakrisnapillai, Erin Crowgey, Demetria Ruhl, Darcy Hamill, Nitin Mahajan, Todd Druley, E. Anders Kolb, Sonali P. Barwe. Identification of a novel fusion protein SPTAN1-ABL1 in a child with T-cell acute lymphoblastic leukemia: Functional characterization and therapeutic implications [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2019; 2019 Mar 29-Apr 3; Atlanta, GA. Philadelphia (PA): AACR; Cancer Res 2019;79(13 Suppl):Abstract nr LB-322.
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- 2019
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40. Cardiac Magnetic Resonance Imaging in Peripartum Cardiomyopathy
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Luis Afonso, Tamam Mohamad, Raman Danrad, Natasha Purai Arora, Nitin Mahajan, Tao Li, and Anupama Kottam
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Adult ,medicine.medical_specialty ,Adolescent ,Peripartum cardiomyopathy ,Radiography ,Young Adult ,Pregnancy ,Cardiac magnetic resonance imaging ,Internal medicine ,Peripartum Period ,Humans ,Medicine ,cardiovascular diseases ,Retrospective Studies ,Ejection fraction ,medicine.diagnostic_test ,business.industry ,Magnetic resonance imaging ,Retrospective cohort study ,General Medicine ,medicine.disease ,Magnetic Resonance Imaging ,Heart failure ,Cardiology ,Female ,Radiology ,Cardiomyopathies ,business - Abstract
Background Peripartum cardiomyopathy (PPCM) is a rare life-threatening condition of unclear etiology. Data on the use of cardiac magnetic resonance (CMR) imaging to characterize PPCM are limited. This study was done to assess the role of CMR imaging for the diagnosis and prognostication of patients with PPCM. Methods Medical records of a tertiary medical center were screened for PPCM patients with CMR imaging done within the past 5 years (2006-2011). Images were reviewed by 2 expert radiologists (blinded to clinical data) using cine sequences for chamber function and size, T2-weighted images for the determination of edema (T2-ratio), and late gadolinium enhancement (LGE) sequences for myocardial tissue characterization. Results Ten PPCM patients (aged 28 ± 6 years, 90% African American) had a total of 15 CMR examinations: 4 in the acute phase (within 7 days of diagnosis) and 11 during follow-up (median, 12 months; range, 1-72 months). Left ventricular ejection fraction was decreased in all 4 initial scans. Elevated T2 ratio (> 2) seen in 1 patient decreased on follow-up imaging. LGE was seen in 1 of the 4 acute-phase scans and in 4 of the 11 follow-up phase scans. These 4 patients had multiple readmissions because of heart failure exacerbations and persistently low left ventricular ejection fraction on subsequent echo- cardiograms. Conclusions LGE seems to be associated with a poor prognosis in the setting of PPCM. CMR imaging seems to have promising practical implications in the diagnosis and prognostication of PPCM patients.
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- 2014
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41. Levels of Interleukin-18 and Endothelin-1 in Children with Henoch-Schönlein Purpura: A Study from Northern India
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Surjit Singh, Nitin Mahajan, Ranjana W. Minz, Veena Dhawan, Dinesh Bisht, and Divya Kapoor
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Male ,medicine.medical_specialty ,Henoch-Schonlein purpura ,IgA Vasculitis ,India ,Dermatology ,Gastroenterology ,Internal medicine ,Prevalence ,medicine ,Humans ,Child ,Endothelin-1 ,business.industry ,Cell adhesion molecule ,Interleukin-18 ,Interleukin ,medicine.disease ,Endothelin 1 ,Purpura ,Child, Preschool ,Pediatrics, Perinatology and Child Health ,Immunology ,Etiology ,Female ,Interleukin 18 ,medicine.symptom ,business ,Systemic vasculitis - Abstract
Henoch-Schönlein purpura (HSP) is an acute systemic vasculitis with unknown etiology, although several studies have found HSP to be related to cytokines such as tumor necrosis factor α, interleukin (IL)-1, and adhesion molecules. In the present study we determined the levels of cytokines such as IL-18 and endothelin-1 (ET-1) in children with HSP. Subjects were divided into three groups (group 1, 20 subjects with HSP; group 2, 10 subjects belonging to group 1 during their follow-up 4 to 6 months later; and group 3, 16 controls who were healthy siblings of the subjects). IL-18 and ET-1 levels were determined using enzyme immunoassay and expressed as mean ± standard deviation. We observed higher IL-18 levels in children with HSP (767.6 ± 145.1 pg/mL) than in controls (614.6 ± 66.54 pg/mL, p 0.05), but IL-18 levels were found to be significantly lower in subjects with HSP in remission (502.7 ± 60.81 pg/mL) than in those who were in an active phase (1,050 ± 244.5 pg/mL, p 0.05, n = 10). ET-1 levels were found to be significantly higher in subjects with HSP (1.93 ± 0.19 pg/mL) than in controls (1.10 ± 0.13 pg/mL, p 0.05), although no significant difference was observed in ET-1 levels between subjects in group 1 (1.88 ± 0.30 pg/mL) and group 2 (1.91 ± 0.120, p 0.05, n = 10). A positive correlation was observed between IL-18 and ET-1 levels in subjects with HSP (correlation coefficient [r] = 0.5254, p 0.01). These results suggest that levels of IL-18 and ET-1 are worth monitoring during the clinical course of the disease, but caution must be exercised in extrapolating data based on small study samples.
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- 2013
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42. Tumor-suppressive Maspin Functions as a Reactive Oxygen Species Scavenger
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Heidi Y. Shi, Thomas J. Lukas, Ming Zhang, and Nitin Mahajan
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chemistry.chemical_classification ,Reactive oxygen species ,Cell growth ,Maspin ,Cell Biology ,Biology ,Serpin ,medicine.disease_cause ,Biochemistry ,chemistry.chemical_compound ,chemistry ,medicine ,Sulfenic acid ,Molecular Biology ,Cysteine metabolism ,Oxidative stress ,Cysteine - Abstract
Maspin is a member of the serine protease inhibitor (serpin) superfamily and displays tumor-suppressing activity by controlling cell migration, proliferation, apoptosis, and adhesion. Here, we provide evidence that maspin acts as a reactive oxygen species (ROS) scavenger through oxidation of three structurally exposed cysteine thiols to sulfenic acid. Ablation of these cysteine residues in maspin resulted in a significant increase in total ROS production in mouse mammary TM40D cells. Also, cells containing a triple-cysteine mutant of maspin showed elevated ERK1/2 activity, a downstream target of ROS, and enhanced proliferation and colony formation. These findings establish a novel mechanism by which maspin utilizes its cysteine thiols to inhibit oxidative stress and cell growth.
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- 2013
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43. Post-traumatic superolateral dislocation of condyle: A case series of 18 condyles with review of literature and a proposed classification
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Nitin Mahajan, Debraj Howlader, Divya Mehrotra, Dichen P. Bhutia, and Jagdish Gamit
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Posterior mandible ,Mandibular Condyles ,business.industry ,medicine.medical_treatment ,Dentistry ,030206 dentistry ,English language ,Review Article ,Sagittal plane ,Condyle ,03 medical and health sciences ,0302 clinical medicine ,medicine.anatomical_structure ,Otorhinolaryngology ,Dislocation (syntax) ,medicine ,Retrospective analysis ,030223 otorhinolaryngology ,business ,General Dentistry ,Reduction (orthopedic surgery) - Abstract
Aim: The aim is to review the English literature for post-traumatic superolateral dislocation of mandibular condyle (SDMC),discuss their dynamics and clinical management and to propose to modify the existing classification of SDMC. Patients and Methods: A literature search was carried at Pubmed, Sciencedirect, Google and references from reported articles were crosschecked to look for the cases of SDMC from 1969 to 2015 in English language. Also, we have reviewed 11 of our patients with total of 18 superolateral dislocated intact or sagittal split condyles ,who visited our unit in the previous two years. Results: In our retrospective analysis 58 cases of SDMC were found in the literature, of which 38 had intact mandibular condyles and 20 had sagittal split. Early and intact SDMC were successfully managed conservatively with closed reduction, whereas old cases and largely fractured condyles necessitated open reduction. Additionally, we observed an unusual dislocation associated with fracture of contralateral posterior mandible(angle) in our series which did not gratify the existing classification. Conclusion: Alteration of the existing classification was required to accommodate the unusual type of dislocation.
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- 2017
44. Signatures of prostate-derived Ets factor (PDEF) in cancer
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Nitin Mahajan
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0301 basic medicine ,Male ,Carcinogenesis ,Biology ,Bioinformatics ,law.invention ,03 medical and health sciences ,0302 clinical medicine ,Prostate ,law ,Cell Line, Tumor ,medicine ,Humans ,Gene ,Transcription factor ,Proto-Oncogene Proteins c-ets ,ETS transcription factor family ,Tumor Suppressor Proteins ,Cancer ,Prostatic Neoplasms ,General Medicine ,medicine.disease ,Biomarker (cell) ,Protein Structure, Tertiary ,Gene Expression Regulation, Neoplastic ,030104 developmental biology ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Cancer research ,Suppressor ,Cancer development - Abstract
The Ets proteins are a family of transcription factors characterized by an evolutionarily conserved DNA-binding domain and have diverse biological functions including tumor suppressor as well as tumor promoter functions. They are regulated via a complex and diverse number of mechanisms and control key cellular processes. Prostate-derived Ets transcription factor (PDEF), a unique member of the ETS family, is present in tissues with high epithelial content are hormone-regulated, such as prostate, breast, salivary glands, ovaries, colon, airways, and stomach tissues. PDEF (prostate-derived Ets factor) is also referred to as SPDEF (SAM pointed domain containing Ets transcription factor), PSE (mouse homolog), or hPSE (human PSE) in the literature and is the sole member of the PDEF ETS sub-family. The role of PDEF in cancer development is still not fully elucidated though. The present article focuses on the key findings about the PDEF's biological functions, interacting proteins, and its target genes. There is a strong urge to focus on the clinical studies in larger cohort, which elucidate the regulation of PDEF and its target genes, to determine the potential of PDEF as biomarker. Based on the studies discussed in the present article, one can anticipate that PDEF offers a great potential for developing therapeutics against cancer.
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- 2016
45. Effect of Long-Term Exposure to Lower Low-Density Lipoprotein Cholesterol Beginning Early in Life on the Risk of Coronary Heart Disease
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John M. Flack, Brian A. Ference, Wonsuk Yoo, Joel Kahn, Karolina K. Mirowska, Issa Alesh, Nitin Mahajan, Kim A. Williams, Abhishek Mewada, and Luis Afonso
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medicine.medical_specialty ,Statin ,medicine.drug_class ,030204 cardiovascular system & hematology ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Internal medicine ,Mendelian randomization ,medicine ,030212 general & internal medicine ,Myocardial infarction ,Cholesterol ,business.industry ,Mendelian Randomization Analysis ,medicine.disease ,Confidence interval ,3. Good health ,Endocrinology ,chemistry ,Meta-analysis ,Cardiology ,lipids (amino acids, peptides, and proteins) ,Cardiology and Cardiovascular Medicine ,Risk assessment ,business - Abstract
Objectives The purpose of this study was to estimate the effect of long-term exposure to lower plasma low-density lipoprotein cholesterol (LDL-C) on the risk of coronary heart disease (CHD). Background LDL-C is causally related to the risk of CHD. However, the association between long-term exposure to lower LDL-C beginning early in life and the risk of CHD has not been reliably quantified. Methods We conducted a series of meta-analyses to estimate the effect of long-term exposure to lower LDL-C on the risk of CHD mediated by 9 polymorphisms in 6 different genes. We then combined these Mendelian randomization studies in a meta-analysis to obtain a more precise estimate of the effect of long-term exposure to lower LDL-C and compared it with the clinical benefit associated with the same magnitude of LDL-C reduction during treatment with a statin. Results All 9 polymorphisms were associated with a highly consistent reduction in the risk of CHD per unit lower LDL-C, with no evidence of heterogeneity of effect (I 2 = 0.0%). In a meta-analysis combining nonoverlapping data from 312,321 participants, naturally random allocation to long-term exposure to lower LDL-C was associated with a 54.5% (95% confidence interval: 48.8% to 59.5%) reduction in the risk of CHD for each mmol/l (38.7 mg/dl) lower LDL-C. This represents a 3-fold greater reduction in the risk of CHD per unit lower LDL-C than that observed during treatment with a statin started later in life (p = 8.43 × 10 −19 ). Conclusions Prolonged exposure to lower LDL-C beginning early in life is associated with a substantially greater reduction in the risk of CHD than the current practice of lowering LDL-C beginning later in life.
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- 2012
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46. Extracellular Matrix Remodeling in Takayasu's Arteritis: Role of Matrix Metalloproteinases and Adventitial Inflammation
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Sonal Malik, Sanjay Jain, Veena Dhawan, Nitin Mahajan, and Safrun Mahmood
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Adult ,Male ,Adventitia ,Pathology ,medicine.medical_specialty ,Adolescent ,T cell ,Takayasu's arteritis ,Gene Expression ,Matrix metalloproteinase ,Extracellular matrix ,Young Adult ,Cell Line, Tumor ,medicine ,Humans ,RNA, Messenger ,Arteritis ,Tissue Inhibitor of Metalloproteinase-1 ,business.industry ,General Medicine ,Middle Aged ,medicine.disease ,Takayasu Arteritis ,Extracellular Matrix ,medicine.anatomical_structure ,Matrix Metalloproteinase 9 ,Cell culture ,Leukocytes, Mononuclear ,Female ,Matrix Metalloproteinase 3 ,Matrix Metalloproteinase 1 ,business ,Extracellular Matrix Degradation - Abstract
Takayasu's arteritis (TA) is an inflammatory fibrosing arteritis affecting predominately the aorta and its main branches. Pathogenesis of this disease remains enigmatic. Despite the numerous studies, the role of adventitia in vascular lesion formation in the setting of TA has been ignored. Virtually nothing is known about the mechanism regulating inflammation in the adventitia in the setting of TA. The present study included subjects with Takayasu's arteritis and normal healthy control subjects. Isolated T cells from peripheral blood mononuclear cells (PBMCs) using nylon wool and HUT-78 (human cutaneous T lymphoma cell line) were stimulated with PHA for 24 h. Stimulated cell were fixed with paraformaldehyde and fractionated into membrane, cytosolic and nuclear fractions. These cellular fractions were co-cultured with human fibrosarcoma cell line (HT-1080) and transcriptional expression of matrix metalloproteinases (MMP-1, 3, 9 and TIMP-1) was determined using semiquantitative RT-PCR. Stimulation of MMPs-TIMP synthesis by HT-1080 cells was mimicked by a membranous fraction derived from activated T-cell isolated from TA subjects and activated HUT-78 cells, whereas cytosolic and nuclear fractions were ineffective. In conclusion, for the first time we provide evidence for the presence of a cell surface-specific antigenic moiety on T-cells of TA subjects, which is responsible for activation of fibroblasts (cells predominantly present in adventitia) to enhance MMP production and, therefore, may lead to extracellular matrix degradation.
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- 2012
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47. Clinical Characteristics, Complications, and Treatment Practices in Patients With RHD
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Arvind Kandoria, Sachin Sondhi, Rajeev Merwaha, Ritesh Verma, Ravi Kumar, Kunal Mahajan, Nitin Mahajan, Ashish Dhiman, Prakash Chand Negi, Munish Dev, Rajeev Bhardwaj, Nirmal Kolte, Neeraj Ganju, Shivani Rao, Sanjeev Asotra, Davinder Pal Singh, Vivek Rana, Rajesh Sharma, Prince Kumar Paul, and Sanjay Rathour
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Community and Home Care ,Aortic valve ,medicine.medical_specialty ,education.field_of_study ,Tricuspid valve ,Heart disease ,Epidemiology ,business.industry ,Population ,Atrial fibrillation ,Odds ratio ,030204 cardiovascular system & hematology ,medicine.disease ,03 medical and health sciences ,0302 clinical medicine ,medicine.anatomical_structure ,Embolism ,Internal medicine ,Mitral valve ,medicine ,030212 general & internal medicine ,Cardiology and Cardiovascular Medicine ,business ,education - Abstract
BACKGROUND Despite the high prevalence of rheumatic heart disease (RHD) in developing countries such as India, data on characteristics, complications, and treatment practices are lacking. The HP-RHD (Himachal Pradesh Rheumatic Heart Disease) registry aimed at reporting these parameters in patients with RHD from a northern state of India. METHODS A total of 2,005 consecutive patients of RHD were enrolled over a period of 6 years (2011 to 2016) in the present study. The clinical characteristics, complications, and treatment practices were systematically recorded. RESULTS The mean age for patients with RHD was 40.3 ± 14.3 (range 5 to 83 years). RHD predominantly affected females (72.3%) and population from rural background (92%). Multivalvular involvement was frequent (43.2%), mitral valve was the commonest affected valve (83.3%). The majority of the patients had moderate-to-severe valvular dysfunction (69.3%). Mitral and tricuspid valve involvement was more frequent in female subjects compared with more frequent aortic valve involvement in male subjects (p
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- 2018
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48. Abstract 2076: Identification of novel fusion genes and expression variants in primary and patient-derived xenograft samples of pediatric leukemia using error-corrected RNA sequencing
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Erin L. Crowgey, E. Anders Kolb, Nitin Mahajan, Sonali P. Barwe, Todd E. Druley, and Anilkumar Gopalakrishnapillai
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Pediatric leukemia ,Fusion gene ,Cancer Research ,Oncology ,Cancer research ,RNA ,Identification (biology) ,Biology ,Tumor xenograft - Abstract
Introduction Chromosomal rearrangements generating gene fusions are more common in pediatric malignancies compared to adults, and possess diagnostic, prognostic and therapeutic value. Traditionally chromosomal rearrangements including structural variants (SVs) are identified using karyotyping and fluorescence in situ hybridization (FISH); however, these methods are not sensitive for small rearrangements and single nucleotide variants (SNVs). The need to detect these cryptic SV and SNVs in pediatric cancers demands the development of assays to analyze complex RNA molecules. Methods Primary bone marrow samples obtained from Nemours Biobank were used for RNA isolation. Targeted error-corrected RNA sequencing using ArcherDX HemeV2 kit was conducted on 30 primary pediatric leukemia samples and their corresponding mouse passaged xenograft samples. RNA data (fastq) was analyzed via a custom cloud environment leveraging ArcherDx Version 5.1.3 software. The gene fusion data produced by the Archer panel was initially correlated with diagnostic FISH data available for each primary sample. Results Ten out of 30 primary bone marrow samples possessed gene fusions detected by routinely tested FISH probes for diagnostic purposes, and including ETV6-RUNX1, BCR-ABL1, TCF3-PBX1, and KMT2A. In addition, this approach detected cryptic gene fusions in 10 samples that were negative for chromosomal rearrangements via FISH, including SPTAN1-ABL1, RUNX1-MKL1, NUP98-NSD1, P2RY8-CRLF2 and TCF3-HLF. The remaining 10 samples, which did not possess detectable gene fusions, showed abnormal exon usage and domain duplications for several, key oncogenes along with novel mutations. A comparison of the primary sample and mouse passaged xenograft sample revealed that majority of gene fusions representing the abundant clone remained consistent between the primary and xenograft sample in secondary and tertiary passages. Certain gene fusions representing minor clones appeared and disappeared in xenograft samples and subsequent passages in mice in comparison to the primary patient sample, highlighting the heterogeneity of the disease. Thus, the presence of major driver mutations at similar allelic frequencies in xenografts compared to primary samples and over multiple passages confirms the utility of xenograft models for preclinical drug testing. Discussion Using a novel approach that utilizes targeted error-corrected sequencing, all the aberrations detected by clinical diagnostic testing were verified, plus several novel fusion events were identified with high confidence. This method also validated the concordance between primary and xenograft samples. Characterization of these novel cryptic fusions and exonal variants in leukemogenesis will enable identification of new drug targets and prognostic factors for pediatric leukemia. Citation Format: Sonali P. Barwe, Anilkumar Gopalakrishnapillai, Nitin Mahajan, Todd Druley, E. Anders Kolb, Erin L. Crowgey. Identification of novel fusion genes and expression variants in primary and patient-derived xenograft samples of pediatric leukemia using error-corrected RNA sequencing [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2018; 2018 Apr 14-18; Chicago, IL. Philadelphia (PA): AACR; Cancer Res 2018;78(13 Suppl):Abstract nr 2076.
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- 2018
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49. C-reactive protein (CRP) up-regulates expression of receptor for advanced glycation end products (RAGE) and its inflammatory ligand EN-RAGE in THP-1 cells: Inhibitory effects of atorvastatin
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Ajay Bahl, Veena Dhawan, and Nitin Mahajan
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Glycation End Products, Advanced ,MAPK/ERK pathway ,medicine.medical_specialty ,Cell Survival ,MAP Kinase Signaling System ,p38 mitogen-activated protein kinases ,Receptor for Advanced Glycation End Products ,Gene Expression ,Inflammation ,p38 Mitogen-Activated Protein Kinases ,Monocytes ,RAGE (receptor) ,Endothelial activation ,Glycation ,Cell Line, Tumor ,Internal medicine ,Atorvastatin ,medicine ,Humans ,Pyrroles ,cardiovascular diseases ,Receptors, Immunologic ,Extracellular Signal-Regulated MAP Kinases ,Kinase ,business.industry ,Receptors, IgG ,S100 Proteins ,S100A12 Protein ,JNK Mitogen-Activated Protein Kinases ,nutritional and metabolic diseases ,Up-Regulation ,C-Reactive Protein ,Endocrinology ,Heptanoic Acids ,Cancer research ,Hydroxymethylglutaryl-CoA Reductase Inhibitors ,medicine.symptom ,Signal transduction ,Cardiology and Cardiovascular Medicine ,business ,Cell Division - Abstract
Background Receptor for advanced glycation end products (RAGE) may play an important role in inflammatory processes and endothelial activation. Extracellular newly identified RAGE binding protein (EN-RAGE), natural pro-inflammatory ligand for RAGE. The role of C-reactive protein (CRP) as a mediator in inflammation and atherosclerosis is the subject of recent investigations worldwide. In the present study, we investigated the effect of CRP on RAGE and EN-RAGE gene expression in THP-1 monocytic cell line. MAP kinases (ERK, p38 and JNK) were exploited as possible signaling pathways involved in the signal transduction by CRP. Further, atorvastatin was used as a therapeutic modality for modulation of these genes in the presence of CRP. Materials and methods Time and dose-dependent experiments were carried out in the presence of CRP. Specific MAPK pathways inhibitors were used to elucidate the signaling pathways involved. Effect of atorvastatin was also determined in the presence of CRP on the expression of these genes. Results Time and dose-dependent experiments revealed that, treatment of THP-1 cells with 100 μg of CRP/ml/10 6 cells for 24 h, augmented the expression of RAGE and EN-RAGE genes by 2.5–3.5 folds and 3.5–4.5 folds respectively. CRP acted via FcγRII and utilized ERK, p38 and JNK pathways to transduce signals. Atorvastatin in a dose of 20 μM, was able to attenuate up-regulation of CRP-induced genes ( p Conclusion Our data strongly suggests that blockade of RAGE–EN-RAGE by statins at an early stage may prevent inflammation in atherosclerosis and counteract the harmful effects mediated by CRP.
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- 2010
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50. Transcriptional expression and gelatinolytic activity of matrix metalloproteinases in Henoch-Schonlein purpura
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Satya Shila Singh, Nitin Mahajan, Dinesh C. S. Bisht, Veena Dhawan, and Ranjana W. Minz
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Henoch-Schonlein purpura ,business.industry ,General Medicine ,MMP9 ,Matrix metalloproteinase ,medicine.disease ,Peripheral blood mononuclear cell ,Pediatrics, Perinatology and Child Health ,Immunology ,medicine ,Zymography ,Kawasaki disease ,Arteritis ,business ,Systemic vasculitis - Abstract
Aim: Accelerated extracellular matrix breakdown caused by the increased activity of matrix metalloproteinases (MMPs) has been implicated in several rheumatological disorders and systemic vasculitides, especially Takayasu’s arteritis and Kawasaki disease. Therefore, the aim of the present study was to investigate the potential role of MMPs in Henoch–Schonlein purpura (HSP), an acute type of systemic vasculitis in children. Methods: We studied the activity of MMP-2 and MMP-9 in the sera using gelatin zymography and the transcriptional expression in peripheral blood mononuclear cells using semi-quantitative RT-PCR in 20 patients with HSP in acute and convalescent phase and in 20 healthy children, who were siblings of the subjects with same age group. Results: All 20 children with HSP showed increased levels of serum activity of MMP-2 and MMP9 in acute phase as compared with their convalescent phase [MMP-2 (p > 0.05); MMP-9 (p > 0.05)] and their control counterparts [MMP-2 (p < 0.001); MMP-9 (p < 0.001)]. Similarly, transcriptional expression of MMPs was found to be higher in the acute phase of HSP than in convalescent phase [MMP-2 (p < 0.05); MMP-9 (p < 0.001)] and in their healthy controls [MMP-2 (p < 0.001); MMP-9 (p < 0.01)]. Conclusion: The presence of excessive transcriptional expression and gelatinolytic activity of MMPs may be downstream to the actual aetiopathogenetic factors.
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- 2010
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