56 results on '"Nirmala Pathmanathan"'
Search Results
2. Electronic medical record implementation in tertiary care: factors influencing adoption of an electronic medical record in a cancer centre
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Anna Janssen, Candice Donnelly, Elisabeth Elder, Nirmala Pathmanathan, and Tim Shaw
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Multidisciplinary care ,Clinical informatics ,Electronic medical records ,Implementation ,Digital health ,Data ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background Electronic Medical Records (EMRs) are one of a range of digital health solutions that are key enablers of the data revolution transforming the health sector. They offer a wide range of benefits to health professionals, patients, researchers and other key stakeholders. However, effective implementation has proved challenging. Methods A qualitative methodology was used in the study. Interviews were conducted with 12 clinical and administrative staff of a cancer centre at one-month pre-launch and eight clinical and administrative staff at 12-months post-launch of an EMR. Data from the interviews was collected via audio recording. Audio recordings were transcribed, de-identified and analysed to identify staff experiences with the EMR. Results Data from the pre-implementation interviews were grouped into four categories: 1) Awareness and understanding of EMR; 2) Engagement in launch process; 3) Standardisation and completeness of data; 4) Effect on workload. Data from the post-launch interviews were grouped into six categories: 1) Standardisation and completeness of data; 2) Effect on workload; 3) Feature completeness and functionality; 4) Interaction with technical support; 5) Learning curve; 6) Buy-in from staff. Two categories: Standardisation and completeness of data and effect on workload were common across pre and post-implementation interviews. Conclusion Findings from this study contribute new knowledge on barriers and enablers to the implementation of EMRs in complex clinical settings. Barriers to successful implementation include lack of technical support once the EMR has launched, health professional perception the EMR increases workload, and the learning curve for staff adequately familiarize themselves with using the EMR.
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- 2021
- Full Text
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3. Simple non-iterative clustering and CNNs for coarse segmentation of breast cancer whole-slide images.
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Rawan Albusayli, J. Dinny Graham, Nirmala Pathmanathan, Muhammad Shaban, Fayyaz Minhas, Jane E. Armes, and Nasir M. Rajpoot
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- 2021
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4. Should low-risk DCIS lose the cancer label? An evidence review
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Tara Ma, Caitlin R. Semsarian, Alexandra Barratt, Lisa Parker, Nirmala Pathmanathan, Brooke Nickel, and Katy J. L. Bell
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Cancer Research ,Oncology - Abstract
Background Population mammographic screening for breast cancer has led to large increases in the diagnosis and treatment of ductal carcinoma in situ (DCIS). Active surveillance has been proposed as a management strategy for low-risk DCIS to mitigate against potential overdiagnosis and overtreatment. However, clinicians and patients remain reluctant to choose active surveillance, even within a trial setting. Re-calibration of the diagnostic threshold for low-risk DCIS and/or use of a label that does not include the word ‘cancer’ might encourage the uptake of active surveillance and other conservative treatment options. We aimed to identify and collate relevant epidemiological evidence to inform further discussion on these ideas. Methods We searched PubMed and EMBASE databases for low-risk DCIS studies in four categories: (1) natural history; (2) subclinical cancer found at autopsy; (3) diagnostic reproducibility (two or more pathologist interpretations at a single time point); and (4) diagnostic drift (two or more pathologist interpretations at different time points). Where we identified a pre-existing systematic review, the search was restricted to studies published after the inclusion period of the review. Two authors screened records, extracted data, and performed risk of bias assessment. We undertook a narrative synthesis of the included evidence within each category. Results Natural History (n = 11): one systematic review and nine primary studies were included, but only five provided evidence on the prognosis of women with low-risk DCIS. These studies reported that women with low-risk DCIS had comparable outcomes whether or not they had surgery. The risk of invasive breast cancer in patients with low-risk DCIS ranged from 6.5% (7.5 years) to 10.8% (10 years). The risk of dying from breast cancer in patients with low-risk DCIS ranged from 1.2 to 2.2% (10 years). Subclinical cancer at autopsy (n = 1): one systematic review of 13 studies estimated the mean prevalence of subclinical in situ breast cancer to be 8.9%. Diagnostic reproducibility (n = 13): two systematic reviews and 11 primary studies found at most moderate agreement in differentiating low-grade DCIS from other diagnoses. Diagnostic drift: no studies found. Conclusion Epidemiological evidence supports consideration of relabelling and/or recalibrating diagnostic thresholds for low-risk DCIS. Such diagnostic changes would need agreement on the definition of low-risk DCIS and improved diagnostic reproducibility.
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- 2023
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5. Impact of the EndoPredict genomic assay on treatment decisions for oestrogen receptor-positive early breast cancer patients: benefits of physician selective testing
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Rachel F. Dear, James French, Tram B. Doan, Michelle White, Elisabeth N. Elder, Jeremy Hsu, Stephen B. Fox, Rina Hui, Meagan Brennan, Paul R. Harnett, G. Bruce Mann, Elgene Lim, Farid Meybodi, Masrura Kabir, Nirmala Pathmanathan, Nicholas Wilcken, Phuong Dinh, Kirsty Stuart, Tim Wang, Verity Ahern, and J. Dinny Graham
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Cancer Research ,medicine.medical_specialty ,business.industry ,Logistic regression ,medicine.disease ,Breast cancer ,Oncology ,Internal medicine ,Progesterone receptor ,Cohort ,Adjuvant therapy ,Medicine ,Treatment decision making ,Intermediate Grade ,business ,Early breast cancer - Abstract
PURPOSE Genomic tests improve accuracy of risk prediction for early breast cancers but these are expensive. This study evaluated the clinical utility of EndoPredict®, in terms of impact on adjuvant therapy recommendations and identification of parameters to guide selective application. METHODS Patients with ER-positive, HER2-negative, and early-stage invasive breast cancer were tested with EndoPredict®. Two cohorts were recruited: one consecutively and another at clinical team discretion. Systemic treatment recommendations were recorded before and after EndoPredict® results were revealed to the multidisciplinary team. RESULTS 233 patients were recruited across five sites: 123 consecutive and 110 at clinical team discretion. In the consecutive cohort 50.6% (62/123) cases were classified high risk of recurrence by EndoPredict®, compared with 62.7% (69/110) in the selective cohort. A change in treatment recommendation was significantly more likely (p
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- 2021
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6. Comparison of breast cancer HER-2 receptor testing with immunohistochemistry and in situ hybridization
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Aswin Shanmugalingam, Kerry Hitos, Nirmala Pathmanathan, Senarath Edirimmane, T. Michael Hughes, and Nicholas K. Ngui
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Cancer Research ,Oncology - Abstract
Human epidermal growth factor receptor-2 (HER2) status can be tested with immunohistochemistry (IHC) and in situ hybridization (ISH). The 2018 American Society of Clinical Oncology/College of American Pathologists (ASCO/CAP) HER2 testing guidelines suggest initial HER2 testing using IHC and further testing IHC equivocal cases with ISH. However, many institutions perform both IHC and ISH on the same specimen. This study aims to analyze the concordance between HER2 IHC and ISH in order to evaluate the benefit of repeating HER2 testing on the same breast cancer specimens.Patients diagnosed with invasive breast cancer through BreastScreen NSW Sydney West program between January 2018 and December 2020 were identified and their HER2 IHC and HER2 ISH results on core needle biopsy (CNB) and surgical excisions (SE) were retrospectively collected. Specimens with both IHC and ISH results were then analyzed for agreement and concordance using unweighted kappa values. Equivocal IHC (2+) cases were excluded from concordance analysis.Overall, there were 240 invasive breast cancer specimens (CNB and SE) with both IHC and ISH recorded. Concordance between HER2 IHC and ISH was 100% (95% CI: 96.2-100%; κ = 1.00 (P 0.001)). Of the IHC equivocal cases (n = 146), 94.5% were ISH negative.There was perfect positive concordance and agreement between non-equivocal IHC and ISH results. This reinforces that IHC alone can be utilized reliably for testing HER2 status of non-equivocal cases consistent with the 2018 ASCO/CAP guidelines.
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- 2022
7. Interobserver concordance in visual assessment of Ki67 immunohistochemistry in surgical excision specimens from patients with lymph node-negative breast cancer
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Susanna N Thomas, Rosemary L. Balleine, Shaun Chou, Nirmala Pathmanathan, Hema Mahajan, Belinda E Butcher, Gelareh Farshid, and Masrura Kabir
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0301 basic medicine ,Cancer Research ,Reproducibility ,business.industry ,Intraclass correlation ,Concordance ,medicine.disease ,Cell counting ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Breast cancer ,Oncology ,030220 oncology & carcinogenesis ,Visual assessment ,Medicine ,Immunohistochemistry ,business ,Nuclear medicine ,Kappa - Abstract
This study aimed to determine the interobserver concordance of two methods for proliferation assessment in breast cancer using Ki67 immunohistochemistry. Ki67 was independently assessed in randomly selected tumour samples from patients with lymph node-negative breast cancer using two different methods: either cell counting or visual estimation of hot spot areas. For hot spot cell counting, positive and negative cell numbers were recorded for total cell counts of 300–500, 500–800 and 800–1000 cells. Visual estimation involved allocation of a score from 1 to 5 using a visual scale to estimate percentage positivity. Interobserver agreement for hot spot counting was calculated using a two-way fixed effects intraclass correlation model, and by using Cohen’s kappa measure for visual assessment. Prognostic concordance between the two methods was also calculated using Cohen’s kappa. Samples from 96 patients were included in this analysis. Interobserver agreement for hot spot cell counting was excellent (> 0.75) across all three cell count ranges, with correlation coefficients of 0.88 (95% CI 0.84–0.92), 0.87 (95% CI 0.82–0.91) and 0.89 (95% CI 0.85–0.92), respectively. Interobserver agreement with visual estimation was greatest for hot spots compared with areas of intermediate or low proliferation, with kappa scores of 0.49, 0.42 and 0.40, respectively. Both assessment methods demonstrated excellent prognostic agreement. Interobserver and prognostic concordance in Ki67 immunohistochemistry assessments was high using either hot spot cell counting or visual estimation, further supporting the utility and reproducibility of these cost-efficient methods to assess proliferation.
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- 2021
- Full Text
- View/download PDF
8. Electronic medical record implementation in tertiary care: factors influencing adoption of an electronic medical record in a cancer centre
- Author
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Nirmala Pathmanathan, Candice Donnelly, Elisabeth Elder, Tim Shaw, and Anna Janssen
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Technology ,020205 medical informatics ,Health Personnel ,education ,Workload ,02 engineering and technology ,Health informatics ,Health administration ,03 medical and health sciences ,Technical support ,0302 clinical medicine ,0202 electrical engineering, electronic engineering, information engineering ,Electronic Health Records ,Humans ,Medicine ,030212 general & internal medicine ,Electronic medical records ,health care economics and organizations ,Medical education ,Data ,Tertiary Healthcare ,business.industry ,Health Policy ,Medical record ,Nursing research ,lcsh:Public aspects of medicine ,Multidisciplinary care ,lcsh:RA1-1270 ,Digital health ,Clinical informatics ,Implementation ,business ,Research Article ,Qualitative research - Abstract
Background Electronic Medical Records (EMRs) are one of a range of digital health solutions that are key enablers of the data revolution transforming the health sector. They offer a wide range of benefits to health professionals, patients, researchers and other key stakeholders. However, effective implementation has proved challenging. Methods A qualitative methodology was used in the study. Interviews were conducted with 12 clinical and administrative staff of a cancer centre at one-month pre-launch and eight clinical and administrative staff at 12-months post-launch of an EMR. Data from the interviews was collected via audio recording. Audio recordings were transcribed, de-identified and analysed to identify staff experiences with the EMR. Results Data from the pre-implementation interviews were grouped into four categories: 1) Awareness and understanding of EMR; 2) Engagement in launch process; 3) Standardisation and completeness of data; 4) Effect on workload. Data from the post-launch interviews were grouped into six categories: 1) Standardisation and completeness of data; 2) Effect on workload; 3) Feature completeness and functionality; 4) Interaction with technical support; 5) Learning curve; 6) Buy-in from staff. Two categories: Standardisation and completeness of data and effect on workload were common across pre and post-implementation interviews. Conclusion Findings from this study contribute new knowledge on barriers and enablers to the implementation of EMRs in complex clinical settings. Barriers to successful implementation include lack of technical support once the EMR has launched, health professional perception the EMR increases workload, and the learning curve for staff adequately familiarize themselves with using the EMR.
- Published
- 2021
9. Breast implant-associated ALCL (BIA-ALCL). Experience at Douglass Hanly Moir Pathology
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Leonard Hsu, Kwan Yee Tsu, Jenny Turner, Ivan Burchett, Anita Muljono, King Tan, Oana Crainic, Kathleen Young, Jessamine Reddy, Nirmala Pathmanathan, Suzanne Danieletto, Lisa Lin, Kathleen Merrick, Caroline Kurek, Eva Fong, Banu Banuthevan, Marcella Roman, Thomas Lynch, Alison Barnett, Caroline Edralin, Debbie Ekman, Frances Siganakis, Jasminka Humcevic, Jeffrey Ashdown, Joanne Crescini, Li Ping Zhou, Mario Rossetto, Reena Small, Ross McDonald, Shirley George, Sophie Zuo, and Cristina Vargas
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Pathology and Forensic Medicine - Published
- 2023
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10. Lymphoma involvement of the breast. Experience at Douglass Hanly Moir Pathology
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Leonard Hsu, Kwan Yee Tsu, Jenny Turner, Ivan Burchett, Anita Muljono, King Tan, Oana Crainic, Kathleen Young, Jessamine Reddy, Nirmala Pathmanathan, Suzanne Danieletto, Lisa Lin, Kathleen Merrick, Caroline Kurek, Eva Fong, Banu Banuthevan, Marcella Roman, Thomas Lynch, and Cristina Vargas
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Pathology and Forensic Medicine - Published
- 2023
- Full Text
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11. Ductal Carcinoma in Situ: Molecular Changes Accompanying Disease Progression
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Gemma M. Wilson, Phuong Dinh, Nirmala Pathmanathan, and J. Dinny Graham
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Cancer Research ,Carcinoma, Intraductal, Noninfiltrating ,Oncology ,Carcinoma, Ductal, Breast ,Disease Progression ,Tumor Microenvironment ,Humans ,Breast Neoplasms ,Female ,Biomarkers - Abstract
Ductal carcinoma in situ (DCIS) is a non-obligate precursor of invasive ductal carcinoma (IDC), whereby if left untreated, approximately 12% of patients develop invasive disease. The current standard of care is surgical removal of the lesion, to prevent potential progression, and radiotherapy to reduce risk of recurrence. There is substantial overtreatment of DCIS patients, considering not all DCIS lesions progress to invasive disease. Hence, there is a critical imperative to better predict which DCIS lesions are destined for poor outcome and which are not, allowing for tailored treatment. Active surveillance is currently being trialed as an alternative management practice, but this approach relies on accurately identifying cases that are at low risk of progression to invasive disease. Two DCIS-specific genomic profiling assays that attempt to distinguish low and high-risk patients have emerged, but imperfections in risk stratification coupled with a high price tag warrant the continued search for more robust and accessible prognostic biomarkers. This search has largely turned researchers toward the tumor microenvironment. Recent evidence suggests that a spectrum of cell types within the DCIS microenvironment are genetically and phenotypically altered compared to normal tissue and play critical roles in disease progression. Uncovering the molecular mechanisms contributing to DCIS progression has provided optimism for the search for well-validated prognostic biomarkers that can accurately predict the risk for a patient developing IDC. The discovery of such markers would modernize DCIS management and allow tailored treatment plans. This review will summarize the current literature regarding DCIS diagnosis, treatment, and pathology.
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- 2022
12. Impact of the EndoPredict genomic assay on treatment decisions for oestrogen receptor-positive early breast cancer patients: benefits of physician selective testing
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Phuong, Dinh, J Dinny, Graham, Elisabeth N, Elder, Masrura, Kabir, Tram B, Doan, James, French, Farid, Meybodi, Rina, Hui, Nicholas R, Wilcken, Paul R, Harnett, Jeremy, Hsu, Kirsty E, Stuart, Tim, Wang, Verity, Ahern, Meagan, Brennan, Stephen B, Fox, Rachel F, Dear, Elgene, Lim, Michelle, White, G Bruce, Mann, and Nirmala, Pathmanathan
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Cohort Studies ,Receptors, Estrogen ,Chemotherapy, Adjuvant ,Receptor, ErbB-2 ,Physicians ,Humans ,Breast Neoplasms ,Female ,Genomics ,Prognosis - Abstract
Genomic tests improve accuracy of risk prediction for early breast cancers but these are expensive. This study evaluated the clinical utility of EndoPredict®, in terms of impact on adjuvant therapy recommendations and identification of parameters to guide selective application.Patients with ER-positive, HER2-negative, and early-stage invasive breast cancer were tested with EndoPredict®. Two cohorts were recruited: one consecutively and another at clinical team discretion. Systemic treatment recommendations were recorded before and after EndoPredict® results were revealed to the multidisciplinary team.233 patients were recruited across five sites: 123 consecutive and 110 at clinical team discretion. In the consecutive cohort 50.6% (62/123) cases were classified high risk of recurrence by EndoPredict®, compared with 62.7% (69/110) in the selective cohort. A change in treatment recommendation was significantly more likely (p 0.0001) in the selective cohort (43/110, 39.1%) compared to the consecutive group (11/123, 8.9%). The strongest driver of selective recruitment was intermediate grade histology, whilst logistic regression modelling demonstrated that nodal status (p 0.001), proliferative rate (p = 0.001), and progesterone receptor positivity (p 0.001) were the strongest discriminators of risk.Whilst molecular risk can be predicted by traditional variables in a high proportion of cases, EndoPredict® had a greater impact on treatment decisions in those cases selected for testing at team discretion. This is indicative of the robust ability of the clinical team to identify cases most likely to benefit from testing, underscoring the value of genomic tests in the oncologists' tool kit.
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- 2021
13. Abstract P3-08-03: Dissecting the heterogeneity of metaplastic breast cancer: A morphological, immunohistochemical and genomic analysis of a large cohort
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JC Liu, Lauren Kalinowski, QC Xu, M Bettington, Stephen B. Fox, JM Saunus, Puay Hoon Tan, E Kalaw, Kate J. Johnstone, Sunil R. Lakhani, Sandra A O'Toole, Katia Nones, A.E. McCart Reed, Kaltin Ferguson, Gary Tse, Irma Gresshoff, Colleen Niland, Peter T. Simpson, Rin Yamaguchi, David Papadimos, Stephen H. Kazakoff, LE Reid, Nick Waddell, Jamie R. Kutasovic, Gavin Harris, D Black, James Bennett, Andrew Scott Reid, Morgan R. Davidson, Rajadurai Pathmanathan, John V. Pearson, Malcolm Lim, Nirmala Pathmanathan, and Ashwini Raghavendra
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Oncology ,Cancer Research ,medicine.medical_specialty ,biology ,CD44 ,Cancer ,medicine.disease ,Breast cancer ,Internal medicine ,Cohort ,biology.protein ,medicine ,PTEN ,Stage (cooking) ,Survival rate ,Exome sequencing - Abstract
Although rare, Metaplastic Breast Carcinomas (MBC) account for significant global breast cancer mortality. This subgroup is extremely heterogeneous and by definition exhibits metaplastic change to squamous and/or mesenchymal elements, including but not limited to spindle, squamous, chondroid, osseous and rhabdomyoid elements. The WHO working group recognizes that the current classification is inadequate and in the interim, has suggested a purely descriptive classification. The mixed epithelial-mesenchymal morphology has led to speculation that MBC represent 'stem cell tumours'; in support of this, MBC have been shown to have a CD44+/CD24-/low phenotype. Clinically, patients present with tumours that are larger (higher stage), have increased likelihood of distant metastases at presentation and overall, have a reduced 5-year survival rate compared to Invasive Carcinoma-NST. Hence, this is a unique subtype with poor outcome but without a robust classification or understanding of the biology to aid clinical management. We present a detailed morphological, immunohistochemical and genomic analysis of a large series of MBC (n=347), as amassed through the Asia-Pacific MBC consortium. We consider our morphological dissection using the WHO subtyping guidelines and show that an increasing number of phenotypes in a mixed MBC (classified as WHO_1) significantly associates with a poor prognosis. Immunohistochemical analysis showed that a pure spindle (WHO_5) is significantly less likely to express vimentin, CK5/6, CK14, and CK19 than a mixed WHO_1 with spindle features. Similarly, a WHO_1 with chondroid features is less likely to express EGFR than WHO_1 with chondroid features and rhabdoid or osseous differentiation. Across the cohort, positivity for the AE1/3 antibody and a lack of EGFR expression both significantly associate with a better outcome. We report no significant association between patient age at diagnosis and breast cancer specific survival, nor between age and specific WHO MBC subtypes. We report a significant association between WHO_1 types and increasing tumour grade, and also between tumour size and grade, with tumour size being a highly significant prognostic indicator in this cohort. Our exome sequencing confirms a significant enrichment for TP53 and PTEN mutations in MBC, and intriguingly for concurrent mutations of TP53, PTEN and PIK3CA. A novel enrichment for NF1 mutations is also presented. In summary, we provide a thorough assessment of a large cohort of MBC, including morphology, survival, IHC and exome sequencing, and present our analysis contextualized by the WHO guidelines, extending the existing knowledge base of this rare tumour type. Citation Format: McCart Reed AE, Kalaw E, Nones K, Bettington M, Lim M, Bennett J, Johnstone K, Kutasovic JR, Kazakoff S, Xu QC, Saunus JM, Reid LE, Black D, Niland C, Ferguson K, Gresshoff I, Raghavendra A, Liu JC, Kalinowski L, Reid AS, Davidson M, Pearson JV, Yamaguchi R, Harris G, Tse G, Papadimos D, Pathmanathan R, Pathmanathan N, Tan PH, Fox S, O'Toole S, Waddell N, Simpson PT, Lakhani SR. Dissecting the heterogeneity of metaplastic breast cancer: A morphological, immunohistochemical and genomic analysis of a large cohort [abstract]. In: Proceedings of the 2018 San Antonio Breast Cancer Symposium; 2018 Dec 4-8; San Antonio, TX. Philadelphia (PA): AACR; Cancer Res 2019;79(4 Suppl):Abstract nr P3-08-03.
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- 2019
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14. Interobserver concordance in visual assessment of Ki67 immunohistochemistry in surgical excision specimens from patients with lymph node-negative breast cancer
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Susanna, Thomas, Masrura, Kabir, Belinda E, Butcher, Shaun, Chou, Hema, Mahajan, Gelareh, Farshid, Rosemary, Balleine, and Nirmala, Pathmanathan
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Observer Variation ,Ki-67 Antigen ,Humans ,Reproducibility of Results ,Breast Neoplasms ,Female ,Immunohistochemistry - Abstract
This study aimed to determine the interobserver concordance of two methods for proliferation assessment in breast cancer using Ki67 immunohistochemistry.Ki67 was independently assessed in randomly selected tumour samples from patients with lymph node-negative breast cancer using two different methods: either cell counting or visual estimation of hot spot areas. For hot spot cell counting, positive and negative cell numbers were recorded for total cell counts of 300-500, 500-800 and 800-1000 cells. Visual estimation involved allocation of a score from 1 to 5 using a visual scale to estimate percentage positivity. Interobserver agreement for hot spot counting was calculated using a two-way fixed effects intraclass correlation model, and by using Cohen's kappa measure for visual assessment. Prognostic concordance between the two methods was also calculated using Cohen's kappa.Samples from 96 patients were included in this analysis. Interobserver agreement for hot spot cell counting was excellent ( 0.75) across all three cell count ranges, with correlation coefficients of 0.88 (95% CI 0.84-0.92), 0.87 (95% CI 0.82-0.91) and 0.89 (95% CI 0.85-0.92), respectively. Interobserver agreement with visual estimation was greatest for hot spots compared with areas of intermediate or low proliferation, with kappa scores of 0.49, 0.42 and 0.40, respectively. Both assessment methods demonstrated excellent prognostic agreement.Interobserver and prognostic concordance in Ki67 immunohistochemistry assessments was high using either hot spot cell counting or visual estimation, further supporting the utility and reproducibility of these cost-efficient methods to assess proliferation.
- Published
- 2020
15. Breast Cancer Polygenic Risk Score and Contralateral Breast Cancer Risk
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Iris Kramer, Maartje J. Hooning, Nasim Mavaddat, Michael Hauptmann, Renske Keeman, Ewout W. Steyerberg, Daniele Giardiello, Antonis C. Antoniou, Paul D.P. Pharoah, Sander Canisius, Zumuruda Abu-Ful, Irene L. Andrulis, Hoda Anton-Culver, Kristan J. Aronson, Annelie Augustinsson, Heiko Becher, Matthias W. Beckmann, Sabine Behrens, Javier Benitez, Marina Bermisheva, Natalia V. Bogdanova, Stig E. Bojesen, Manjeet K. Bolla, Bernardo Bonanni, Hiltrud Brauch, Michael Bremer, Sara Y. Brucker, Barbara Burwinkel, Jose E. Castelao, Tsun L. Chan, Jenny Chang-Claude, Stephen J. Chanock, Georgia Chenevix-Trench, Ji-Yeob Choi, Christine L. Clarke, J. Margriet Collée, Fergus J. Couch, Angela Cox, Simon S. Cross, Kamila Czene, Mary B. Daly, Peter Devilee, Thilo Dörk, Isabel dos-Santos-Silva, Alison M. Dunning, Miriam Dwek, Diana M. Eccles, D. Gareth Evans, Peter A. Fasching, Henrik Flyger, Manuela Gago-Dominguez, Montserrat García-Closas, José A. García-Sáenz, Graham G. Giles, David E. Goldgar, Anna González-Neira, Christopher A. Haiman, Niclas Håkansson, Ute Hamann, Mikael Hartman, Bernadette A.M. Heemskerk-Gerritsen, Antoinette Hollestelle, John L. Hopper, Ming-Feng Hou, Anthony Howell, Hidemi Ito, Milena Jakimovska, Anna Jakubowska, Wolfgang Janni, Esther M. John, Audrey Jung, Daehee Kang, C. Marleen Kets, Elza Khusnutdinova, Yon-Dschun Ko, Vessela N. Kristensen, Allison W. Kurian, Ava Kwong, Diether Lambrechts, Loic Le Marchand, Jingmei Li, Annika Lindblom, Jan Lubiński, Arto Mannermaa, Mehdi Manoochehri, Sara Margolin, Keitaro Matsuo, Dimitrios Mavroudis, Alfons Meindl, Roger L. Milne, Anna Marie Mulligan, Taru A. Muranen, Susan L. Neuhausen, Heli Nevanlinna, William G. Newman, Andrew F. Olshan, Janet E. Olson, Håkan Olsson, Tjoung-Won Park-Simon, Julian Peto, Christos Petridis, Dijana Plaseska-Karanfilska, Nadege Presneau, Katri Pylkäs, Paolo Radice, Gad Rennert, Atocha Romero, Rebecca Roylance, Emmanouil Saloustros, Elinor J. Sawyer, Rita K. Schmutzler, Lukas Schwentner, Christopher Scott, Mee-Hoong See, Mitul Shah, Chen-Yang Shen, Xiao-Ou Shu, Sabine Siesling, Susan Slager, Christof Sohn, Melissa C. Southey, John J. Spinelli, Jennifer Stone, William J. Tapper, Maria Tengström, Soo Hwang Teo, Mary Beth Terry, Rob A.E.M. Tollenaar, Ian Tomlinson, Melissa A. Troester, Celine M. Vachon, Chantal van Ongeval, Elke M. van Veen, Robert Winqvist, Alicja Wolk, Wei Zheng, Argyrios Ziogas, Douglas F. Easton, Per Hall, Marjanka K. Schmidt, Anne-Lise Børresen-Dale, Kristine Sahlberg, Lars Ottestad, Rolf Kåresen, Ellen Schlichting, Marit Muri Holmen, Toril Sauer, Vilde Haakensen, Olav Engebråten, Bjørn Naume, Alexander Fosså, Cecile Kiserud, Kristin Reinertsen, Åslaug Helland, Margit Riis, Jürgen Geisler, Grethe Grenaker Alnæs, Christine Clarke, Deborah Marsh, Rodney Scott, Robert Baxter, Desmond Yip, Jane Carpenter, Alison Davis, Nirmala Pathmanathan, Peter Simpson, J. Dinny Graham, Mythily Sachchithananthan, David Amor, Lesley Andrews, Yoland Antill, Rosemary Balleine, Jonathan Beesley, Ian Bennett, Michael Bogwitz, Leon Botes, Meagan Brennan, Melissa Brown, Michael Buckley, Jo Burke, Phyllis Butow, Liz Caldon, Ian Campbell, Deepa Chauhan, Manisha Chauhan, Alice Christian, Paul Cohen, Alison Colley, Ashley Crook, James Cui, Margaret Cummings, Sarah-Jane Dawson, Anna deFazio, Martin Delatycki, Rebecca Dickson, Joanne Dixon, Ted Edkins, Stacey Edwards, Gelareh Farshid, Andrew Fellows, Georgina Fenton, Michael Field, James Flanagan, Peter Fong, Laura Forrest, Stephen Fox, Juliet French, Michael Friedlander, Clara Gaff, Mike Gattas, Peter George, Sian Greening, Marion Harris, Stewart Hart, Nick Hayward, John Hopper, Cass Hoskins, Clare Hunt, Paul James, Mark Jenkins, Alexa Kidd, Judy Kirk, Jessica Koehler, James Kollias, Sunil Lakhani, Mitchell Lawrence, Geoff Lindeman, Lara Lipton, Liz Lobb, Graham Mann, Sue Anne McLachlan, Bettina Meiser, Roger Milne, Sophie Nightingale, Shona O'Connell, Sarah O'Sullivan, David Gallego Ortega, Nick Pachter, Briony Patterson, Amy Pearn, Kelly Phillips, Ellen Pieper, Edwina Rickard, Bridget Robinson, Mona Saleh, Elizabeth Salisbury, Christobel Saunders, Jodi Saunus, Clare Scott, Adrienne Sexton, Andrew Shelling, Melissa Southey, Amanda Spurdle, Jessica Taylor, Renea Taylor, Heather Thorne, Alison Trainer, Kathy Tucker, Jane Visvader, Logan Walker, Rachael Williams, Ingrid Winship, Mary Ann Young, HUS Gynecology and Obstetrics, Department of Obstetrics and Gynecology, University of Helsinki, Medical Oncology, Public Health, Clinical Genetics, TechMed Centre, and Health Technology & Services Research
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0301 basic medicine ,Oncology ,Multifactorial Inheritance ,PROGNOSIS ,Receptor, ErbB-2 ,LOCI ,Gene Expression ,Medical and Health Sciences ,Cohort Studies ,0302 clinical medicine ,ErbB-2 ,Neoplasms ,Receptors ,Genetics (clinical) ,Progesterone ,Cancer ,Genetics & Heredity ,Genome ,Manchester Cancer Research Centre ,Confounding ,Hazard ratio ,1184 Genetics, developmental biology, physiology ,Neoplasms, Second Primary ,Biological Sciences ,Middle Aged ,Prognosis ,Primary tumor ,Neoadjuvant Therapy ,3. Good health ,Women's cancers Radboud Institute for Health Sciences [Radboudumc 17] ,Second Primary ,030220 oncology & carcinogenesis ,contralateral breast cancer ,kConFab Investigators ,epidemiology ,Female ,Risk assessment ,Receptors, Progesterone ,Life Sciences & Biomedicine ,Cohort study ,Receptor ,Human ,Adult ,medicine.medical_specialty ,ABCTB Investigators ,Breast Neoplasms ,Risk Assessment ,White People ,Article ,NBCS Collaborators ,03 medical and health sciences ,Breast cancer ,AGE ,SDG 3 - Good Health and Well-being ,Asian People ,Internal medicine ,Breast Cancer ,parasitic diseases ,Genetics ,medicine ,Adjuvant therapy ,Humans ,Genetic Predisposition to Disease ,Aged ,Proportional Hazards Models ,Science & Technology ,business.industry ,Proportional hazards model ,Genome, Human ,ResearchInstitutes_Networks_Beacons/mcrc ,Prevention ,22/2 OA procedure ,Estrogen Receptor alpha ,medicine.disease ,ASSOCIATION ANALYSIS ,030104 developmental biology ,polygenic risk score ,genetic ,business ,Genome-Wide Association Study - Abstract
Previous research has shown that polygenic risk scores (PRSs) can be used to stratify women according to their risk of developing primary invasive breast cancer. This study aimed to evaluate the association between a recently validated PRS of 313 germline variants (PRS313) and contralateral breast cancer (CBC) risk. We included 56,068 women of European ancestry diagnosed with first invasive breast cancer from 1990 onward with follow-up from the Breast Cancer Association Consortium. Metachronous CBC risk (N = 1,027) according to the distribution of PRS313 was quantified using Cox regression analyses. We assessed PRS313 interaction with age at first diagnosis, family history, morphology, ER status, PR status, and HER2 status, and (neo)adjuvant therapy. In studies of Asian women, with limited follow-up, CBC risk associated with PRS313 was assessed using logistic regression for 340 women with CBC compared with 12,133 women with unilateral breast cancer. Higher PRS313 was associated with increased CBC risk: hazard ratio per standard deviation (SD) = 1.25 (95%CI = 1.18-1.33) for Europeans, and an OR per SD = 1.15 (95%CI = 1.02-1.29) for Asians. The absolute lifetime risks of CBC, accounting for death as competing risk, were 12.4% for European women at the 10th percentile and 20.5% at the 90th percentile of PRS313. We found no evidence of confounding by or interaction with individual characteristics, characteristics of the primary tumor, or treatment. The C-index for the PRS313 alone was 0.563 (95%CI = 0.547-0.586). In conclusion, PRS313 is an independent factor associated with CBC risk and can be incorporated into CBC risk prediction models to help improve stratification and optimize surveillance and treatment strategies. ispartof: AMERICAN JOURNAL OF HUMAN GENETICS vol:107 issue:5 pages:837-848 ispartof: location:United States status: published
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- 2020
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16. Metaplastic breast cancers frequently express immune checkpoint markers FOXP3 and PD-L1
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Malcolm Lim, Stephen B. Fox, Mark Bettington, Gavin Harris, David Papadimos, Lucinda D Taege, James Bennett, Emarene Kalaw, Sunil R. Lakhani, Puay Hoon Tan, Anna Sokolova, Kate J. Johnstone, Sandra A O'Toole, Gary Tse, Amy E. McCart Reed, Jamie R. Kutasovic, Peter T. Simpson, Rajadurai Pathmanathan, Nirmala Pathmanathan, Kaltin Ferguson, Jodi M. Saunus, Rin Yamaguchi, Colleen Niland, and Irma Gresshoff
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Adult ,Cancer Research ,chemical and pharmacologic phenomena ,Breast Neoplasms ,B7-H1 Antigen ,Article ,Tumour biomarkers ,03 medical and health sciences ,0302 clinical medicine ,Breast cancer ,Lymphocytes, Tumor-Infiltrating ,PD-L1 ,Metaplasia ,medicine ,Biomarkers, Tumor ,Humans ,Clinical significance ,Immune Checkpoint Inhibitors ,Aged ,biology ,Tumor-infiltrating lymphocytes ,business.industry ,FOXP3 ,hemic and immune systems ,Forkhead Transcription Factors ,Metaplastic Breast Carcinoma ,Middle Aged ,medicine.disease ,Immune checkpoint ,Oncology ,030220 oncology & carcinogenesis ,biology.protein ,Cancer research ,Female ,medicine.symptom ,business - Abstract
Background Metaplastic breast carcinoma encompasses a heterogeneous group of tumours with differentiation into squamous and/or spindle, chondroid, osseous or rhabdoid mesenchymal-looking elements. Emerging immunotherapies targeting Programmed Death Ligand 1 (PD-L1) and immune-suppressing T cells (Tregs) may benefit metaplastic breast cancer patients, which are typically chemo-resistant and do not express hormone therapy targets. Methods We evaluated the immunohistochemical expression of PD-L1 and FOXP3, and the extent of tumour infiltrating lymphocytes (TILs) in a large cohort of metaplastic breast cancers, with survival data. Results Metaplastic breast cancers were significantly enriched for PD-L1 positive tumour cells, compared to triple-negative ductal breast cancers (P P = 0.0226). Multivariate analysis identified FOXP3 iTILs expression status as an important independent prognostic factor for patient survival. Conclusions Our findings indicate the clinical significance and prognostic value of FOXP3, PD-1/PD-L1 checkpoint and TILs in metaplastic breast cancer and confirm that a subset of metaplastics may benefit from immune-based therapies.
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- 2020
17. Using computer assisted image analysis to determine the optimal Ki67 threshold for predicting outcome of invasive breast cancer
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Chee Leong Cheng, Aye Aye Thike, Jabed Iqbal, Puay Hoon Tan, Heng Seow Ye, Ana Richelia Jara-Lazaro, Timothy Kwang Yong Tay, Adeline Shi Hui Sng, Zi Long Chow, Huihua Li, Joe Poh Sheng Yeong, Nirmala Pathmanathan, Jeffrey Chun Tatt Lim, Jane Sie Yong Tan, and Valerie Cui Yun Koh
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0301 basic medicine ,Oncology ,medicine.medical_specialty ,Multivariate analysis ,Estrogen receptor ,computer assisted image analysis ,Computer assisted image analysis ,03 medical and health sciences ,0302 clinical medicine ,Breast cancer ,breast cancer ,Internal medicine ,Overall survival ,Medicine ,Tissue microarray ,business.industry ,Anatomical pathology ,Luminal a ,medicine.disease ,030104 developmental biology ,030220 oncology & carcinogenesis ,prognosis ,business ,Ki67 ,Research Paper - Abstract
// Timothy Kwang Yong Tay 1 , Aye Aye Thike 1 , Nirmala Pathmanathan 1, 2 , Ana Richelia Jara-Lazaro 1, 3 , Jabed Iqbal 1 , Adeline Shi Hui Sng 1 , Heng Seow Ye 1 , Jeffrey Chun Tatt Lim 1 , Valerie Cui Yun Koh 1 , Jane Sie Yong Tan 1 , Joe Poh Sheng Yeong 1 , Zi Long Chow 1 , Hui Hua Li 4 , Chee Leong Cheng 1 and Puay Hoon Tan 5 1 Department of Anatomical Pathology, Singapore General Hospital, Singapore 2 Current affiliation: Westmead Breast Cancer Institute, Westmead Hospital, Westmead, NSW, Australia 3 Current affiliation: Q 2 Solutions – Central Laboratories, Singapore Science Park One, Singapore 4 Division of Medicine, Singapore General Hospital, Singapore 5 Division of Pathology, Singapore General Hospital, Singapore Correspondence to: Puay Hoon Tan, email: tan.puay.hoon@singhealth.com.sg Keywords: Ki67; breast cancer; computer assisted image analysis; prognosis Received: October 10, 2017 Accepted: January 25, 2018 Published: February 05, 2018 ABSTRACT Background: Ki67 positivity in invasive breast cancers has an inverse correlation with survival outcomes and serves as an immunohistochemical surrogate for molecular subtyping of breast cancer, particularly ER positive breast cancer. The optimal threshold of Ki67 in both settings, however, remains elusive. We use computer assisted image analysis (CAIA) to determine the optimal threshold for Ki67 in predicting survival outcomes and differentiating luminal B from luminal A breast cancers. Methods: Quantitative scoring of Ki67 on tissue microarray (TMA) sections of 440 invasive breast cancers was performed using Aperio ePathology ImmunoHistochemistry Nuclear Image Analysis algorithm, with TMA slides digitally scanned via Aperio ScanScope XT System. Results: On multivariate analysis, tumours with Ki67 ≥14% had an increased likelihood of recurrence (HR 1.941, p=0.021) and shorter overall survival (HR 2.201, p=0.016). Similar findings were observed in the subset of 343 ER positive breast cancers (HR 2.409, p=0.012 and HR 2.787, p=0.012 respectively). The value of Ki67 associated with ER+HER2-PR
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- 2018
18. The Myoepithelium as a Risk Predictor in Ductal Carcinoma In Situ of the Breast
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Gemma M Wilson, Christine L. Clarke, J. Dinny Graham, Nirmala Pathmanathan, and Barbara J Guild
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In situ ,Pathology ,medicine.medical_specialty ,Risk predictor ,business.industry ,Myoepithelial cell ,Medicine ,General Medicine ,Ductal carcinoma ,business - Published
- 2019
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19. Factors Influencing Implementation of an Electronic Medical Record in a Tertiary Cancer Centre
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Anna, Janssen, Candice, Donnelly, Elisabeth, Elder, Nirmala, Pathmanathan, and Tim, Shaw
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Health Personnel ,Electronic Health Records ,Humans ,Workload - Abstract
EMRs are one of a range of digital health solutions that are key enablers of the data revolution transforming the health sector. They offer a wide range of benefits to health professionals, patients and other key stakeholders. However, effective implementation has proved challenging.A qualitative methodology was used in the study. Interviews were conducted with members of a cancer team 12 months post-implementation of an EMR. Data from the interviews was collected via audio recording. Audio recordings were transcribed, de-identified and analyzed to identify the experiences of staff with the EMR.Data was categorized in to six categories: 1) Standardisation of documentation and completeness of data; 2) Effect on workload; 3) Feature completeness and functionality; 4) Interaction with technical support; 5) Learning curve; 6) Buy-in from staff.Findings from this study contribute new knowledge on barriers and enablers to the implementation of EMRs in complex clinical settings. Barriers to successful implementation include lack of technical support, perceived increase in workload and a learning curve to fully familiarize with the feature set of the EMR.
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- 2019
20. Human epidermal growth factor receptor 2 status of gastric cancer patients in Asia: results from a large, multicountry study
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John Wang, Xiu Nie, Jing-shu Geng, Michael Bilous, Wencai Li, Nirmala Pathmanathan, Julie Hill, Januario Veloso, and Philip McCloud
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0301 basic medicine ,business.industry ,Cancer ,General Medicine ,medicine.disease ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Oncology ,030220 oncology & carcinogenesis ,Cancer research ,Medicine ,business ,Human Epidermal Growth Factor Receptor 2 - Published
- 2016
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21. Axillary reverse mapping in patients with breast cancer: Is it oncologically safe?
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Elisabeth Elder, James French, Nicholas K. Ngui, Christopher J. Kilby, and Nirmala Pathmanathan
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medicine.medical_specialty ,medicine.diagnostic_test ,business.industry ,Sentinel lymph node ,Axillary Lymph Node Dissection ,General Medicine ,medicine.disease ,Surgery ,03 medical and health sciences ,0302 clinical medicine ,Lymphatic system ,Breast cancer ,medicine.anatomical_structure ,Lymphedema ,Oncology ,030220 oncology & carcinogenesis ,Biopsy ,medicine ,030211 gastroenterology & hepatology ,Histopathology ,business ,Lymph node - Abstract
Background Axillary reverse mapping (ARM) is a technique used to identify the lymphatics draining the arm. The aim of this study was to examine the prevalence and predictors of ARM node metastases in breast cancer patients undergoing an axillary lymph node dissection (ALND). Methods A total of 87 patients were enrolled in this study. Patent V Blue dye was injected in the upper arm for ARM node localization. All patients had an ALND with the identified ARM node removed and sent separately for histologic analysis. Results Of 67 (77%) patients in whom an ARM node was identified, 49 (73%) were negative and 18 (27%) were positive for metastases on final histopathology. Positive ARM node status was significantly associated with advanced axillary disease, and larger primary cancers. Patients requiring a completion ALND due to a positive sentinel lymph node biopsy (SLNB) with non-suspicious ARM nodes during surgery did not have ARM node metastases. Conclusions There is a high risk of ARM node involvement, approximately a quarter, in patients with preoperatively known lymph node metastases from breast cancer. However, it may be safe to preserve a clinically non-suspicious ARM node in patients with a positive SLNB who require a completion ALND. J. Surg. Oncol. 2016;113:726–731. © 2016 Wiley Periodicals, Inc.
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- 2016
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22. Developing an Intranet-Based Lymphedema Dashboard for Breast Cancer Multidisciplinary Teams: Design Research Study
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Phuong Dinh, Aldo Saavedra, Paul R. Harnett, Kirsten S Jackson, Candice Donnelly, Anna Janssen, Elisabeth Elder, Tim Shaw, Nirmala Pathmanathan, Judy Kay, Masrura Kabir, and Peter Thiem
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Breast Neoplasms ,Health Informatics ,Health informatics ,Computer Communication Networks ,human-centered design ,03 medical and health sciences ,0302 clinical medicine ,Multidisciplinary approach ,clinical informatics ,eHealth ,Humans ,data visualization ,Lymphedema ,030212 general & internal medicine ,Think aloud protocol ,User-centered design ,Original Paper ,Intranet ,Medical education ,business.industry ,Focus Groups ,Focus group ,Research Design ,030220 oncology & carcinogenesis ,Data quality ,Data Display ,Female ,InformationSystems_MISCELLANEOUS ,business ,Psychology - Abstract
Background A large quantity of data is collected during the delivery of cancer care. However, once collected, these data are difficult for health professionals to access to support clinical decision making and performance review. There is a need for innovative tools that make clinical data more accessible to support health professionals in these activities. One approach for providing health professionals with access to clinical data is to create the infrastructure and interface for a clinical dashboard to make data accessible in a timely and relevant manner. Objective This study aimed to develop and evaluate 2 prototype dashboards for displaying data on the identification and management of lymphedema. Methods The study used a co-design framework to develop 2 prototype dashboards for use by health professionals delivering breast cancer care. The key feature of these dashboards was an approach for visualizing lymphedema patient cohort and individual patient data. This project began with 2 focus group sessions conducted with members of a breast cancer multidisciplinary team (n=33) and a breast cancer consumer (n=1) to establish clinically relevant and appropriate data for presentation and the visualization requirements for a dashboard. A series of fortnightly meetings over 6 months with an Advisory Committee (n=10) occurred to inform and refine the development of a static mock-up dashboard. This mock-up was then presented to representatives of the multidisciplinary team (n=3) to get preliminary feedback about the design and use of such dashboards. Feedback from these presentations was reviewed and used to inform the development of the interactive prototypes. A structured evaluation was conducted on the prototypes, using Think Aloud Protocol and semistructured interviews with representatives of the multidisciplinary team (n=5). Results Lymphedema was selected as a clinically relevant area for the prototype dashboards. A qualitative evaluation is reported for 5 health professionals. These participants were selected from 3 specialties: surgery (n=1), radiation oncology (n=2), and occupational therapy (n=2). Participants were able to complete the majority of tasks on the dashboard. Semistructured interview themes were categorized into engagement or enthusiasm for the dashboard, user experience, and data quality and completeness. Conclusions Findings from this study constitute the first report of a co-design process for creating a lymphedema dashboard for breast cancer health professionals. Health professionals are interested in the use of data visualization tools to make routinely collected clinical data more accessible. To be used effectively, dashboards need to be reliable and sourced from accurate and comprehensive data sets. While the co-design process used to develop the visualization tool proved effective for designing an individual patient dashboard, the complexity and accessibility of the data required for a cohort dashboard remained a challenge.
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- 2020
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23. Developing an Intranet-Based Lymphedema Dashboard for Breast Cancer Multidisciplinary Teams: Design Research Study (Preprint)
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Anna Janssen, Candice Donnelly, Judy Kay, Peter Thiem, Aldo Saavedra, Nirmala Pathmanathan, Elisabeth Elder, Phuong Dinh, Masrura Kabir, Kirsten Jackson, Paul Harnett, and Tim Shaw
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InformationSystems_MISCELLANEOUS - Abstract
BACKGROUND A large quantity of data is collected during the delivery of cancer care. However, once collected, these data are difficult for health professionals to access to support clinical decision making and performance review. There is a need for innovative tools that make clinical data more accessible to support health professionals in these activities. One approach for providing health professionals with access to clinical data is to create the infrastructure and interface for a clinical dashboard to make data accessible in a timely and relevant manner. OBJECTIVE This study aimed to develop and evaluate 2 prototype dashboards for displaying data on the identification and management of lymphedema. METHODS The study used a co-design framework to develop 2 prototype dashboards for use by health professionals delivering breast cancer care. The key feature of these dashboards was an approach for visualizing lymphedema patient cohort and individual patient data. This project began with 2 focus group sessions conducted with members of a breast cancer multidisciplinary team (n=33) and a breast cancer consumer (n=1) to establish clinically relevant and appropriate data for presentation and the visualization requirements for a dashboard. A series of fortnightly meetings over 6 months with an Advisory Committee (n=10) occurred to inform and refine the development of a static mock-up dashboard. This mock-up was then presented to representatives of the multidisciplinary team (n=3) to get preliminary feedback about the design and use of such dashboards. Feedback from these presentations was reviewed and used to inform the development of the interactive prototypes. A structured evaluation was conducted on the prototypes, using Think Aloud Protocol and semistructured interviews with representatives of the multidisciplinary team (n=5). RESULTS Lymphedema was selected as a clinically relevant area for the prototype dashboards. A qualitative evaluation is reported for 5 health professionals. These participants were selected from 3 specialties: surgery (n=1), radiation oncology (n=2), and occupational therapy (n=2). Participants were able to complete the majority of tasks on the dashboard. Semistructured interview themes were categorized into engagement or enthusiasm for the dashboard, user experience, and data quality and completeness. CONCLUSIONS Findings from this study constitute the first report of a co-design process for creating a lymphedema dashboard for breast cancer health professionals. Health professionals are interested in the use of data visualization tools to make routinely collected clinical data more accessible. To be used effectively, dashboards need to be reliable and sourced from accurate and comprehensive data sets. While the co-design process used to develop the visualization tool proved effective for designing an individual patient dashboard, the complexity and accessibility of the data required for a cohort dashboard remained a challenge.
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- 2018
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24. Phenotypic and molecular dissection of metaplastic breast cancer and the prognostic implications
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Amy Ellen, McCart Reed, Emarene, Kalaw, Katia, Nones, Mark, Bettington, Malcolm, Lim, James, Bennett, Kate, Johnstone, Jamie Rose, Kutasovic, Jodi Marie, Saunus, Stephen, Kazakoff, Qinying, Xu, Scott, Wood, Oliver, Holmes, Conrad, Leonard, Lynne Estelle, Reid, Debra, Black, Colleen, Niland, Kaltin, Ferguson, Irma, Gresshoff, Ashwini, Raghavendra, Kate, Harvey, Caroline, Cooper, Cheng, Liu, Lauren, Kalinowski, Andrew Scott, Reid, Morgan, Davidson, John V, Pearson, Nirmala, Pathmanathan, Gary, Tse, David, Papadimos, Rajadurai, Pathmanathan, Gavin, Harris, Rin, Yamaguchi, Puay Hoon, Tan, Stephen B, Fox, Sandra A, O'Toole, Peter Thomas, Simpson, Nicola, Waddell, and Sunil R, Lakhani
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Epithelial-Mesenchymal Transition ,Class I Phosphatidylinositol 3-Kinases ,Breast Neoplasms ,breast cancer ,Antigens, CD ,molecular pathology ,Biomarkers, Tumor ,genomics ,Humans ,Genetic Predisposition to Disease ,skin and connective tissue diseases ,Metaplasia ,Neurofibromin 1 ,metaplastic ,PTEN Phosphohydrolase ,Middle Aged ,Cadherins ,Neoplasms, Complex and Mixed ,Tumor Burden ,ErbB Receptors ,Cross-Sectional Studies ,Phenotype ,NF1 ,Mutation ,Keratins ,Female ,Neoplasm Grading ,Tumor Suppressor Protein p53 ,Article Commentary - Abstract
Metaplastic breast carcinoma (MBC) is relatively rare but accounts for a significant proportion of global breast cancer mortality. This group is extremely heterogeneous and by definition exhibits metaplastic change to squamous and/or mesenchymal elements, including spindle, squamous, chondroid, osseous, and rhabdomyoid features. Clinically, patients are more likely to present with large primary tumours (higher stage), distant metastases, and overall, have shorter 5-year survival compared to invasive carcinomas of no special type. The current World Health Organisation (WHO) diagnostic classification for this cancer type is based purely on morphology - the biological basis and clinical relevance of its seven sub-categories are currently unclear. By establishing the Asia-Pacific MBC (AP-MBC) Consortium, we amassed a large series of MBCs (n = 347) and analysed the mutation profile of a subset, expression of 14 breast cancer biomarkers, and clinicopathological correlates, contextualising our findings within the WHO guidelines. The most significant indicators of poor prognosis were large tumour size (T3; p = 0.004), loss of cytokeratin expression (lack of staining with pan-cytokeratin AE1/3 antibody; p = 0.007), EGFR overexpression (p = 0.01), and for 'mixed' MBC, the presence of more than three distinct morphological entities (p = 0.007). Conversely, fewer morphological components and EGFR negativity were favourable indicators. Exome sequencing of 30 cases confirmed enrichment of TP53 and PTEN mutations, and intriguingly, concurrent mutations of TP53, PTEN, and PIK3CA. Mutations in neurofibromatosis-1 (NF1) were also overrepresented [16.7% MBCs compared to ∼5% of breast cancers overall; enrichment p = 0.028; mutation significance p = 0.006 (OncodriveFM)], consistent with published case reports implicating germline NF1 mutations in MBC risk. Taken together, we propose a practically minor but clinically significant modification to the guidelines: all WHO_1 mixed-type tumours should have the number of morphologies present recorded, as a mechanism for refining prognosis, and that EGFR and pan-cytokeratin expression are important prognostic markers. Copyright © 2018 Pathological Society of Great Britain and Ireland. Published by John WileySons, Ltd.
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- 2018
25. Fine needle aspiration biopsy cytology of phyllodes tumour and fibroadenoma: A cytomorphological study of 104 cases
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Xue Yu Wang, Carol Cox, Nicole Dickinson, Karen Byth, Michael A. Cahill, Angela Bayly, Hema Mahajan, and Nirmala Pathmanathan
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Adult ,Pathology ,medicine.medical_specialty ,Histology ,Stromal cell ,Adolescent ,Biopsy, Fine-Needle ,Breast Neoplasms ,Pathology and Forensic Medicine ,03 medical and health sciences ,0302 clinical medicine ,Phyllodes Tumor ,Cytology ,Biopsy ,medicine ,Humans ,Nuclear atypia ,Observer Variation ,medicine.diagnostic_test ,business.industry ,General Medicine ,Middle Aged ,medicine.disease ,Fibroadenoma ,Fine-needle aspiration ,Feature (computer vision) ,Giant cell ,030220 oncology & carcinogenesis ,030211 gastroenterology & hepatology ,Female ,business - Abstract
Background The cytomorphological features in the distinction between phyllodes tumour (PT) and fibroadenoma (FA) on fine needle aspiration biopsy (FNAB) remains challenging because of the biphasic nature of these lesions and the rarity of PT. Methods FNAB smears of histologically confirmed PT (N = 26) and FA (N = 78) cases were retrieved from a retrospective database interrogation from the Department of Cytology/Tissue Pathology, ICPMR Pathology West (Cerner Millennium) in Westmead Hospital. For each case, two smears were selected, de-identified and independently reviewed by four observers comprising two cytologists and two cytopathologists. Cytological parameters examined included detailed evaluation of smear cellularity, epithelial and stromal components as well as the smear background. Results The cytological features of moderate to marked stromal cellularity and stromal nuclear atypia were more evident in PT than in FA, identified by three out of four observers. The epithelial characteristics, presence of macrophages, multinucleated giant cells and blood vessels showed no statistically significant differences in the distinction between the two lesions. Conclusion The results of this study indicate that in all of the cytological features assessed for PT and FA, no single cytological feature was found to be statistically significant in identifying PT across all observers. This reflects the overlap of cytological features seen in these lesions. FNAB cytology cannot reliably distinguish FA and PT.
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- 2018
26. Axillary dissection versus no axillary dissection in patients with breast cancer and sentinel-node micrometastases (IBCSG 23-01): 10-year follow-up of a randomised, controlled, phase 3 trial
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Achim Fleischmann, Cindy Mak, Jane Hill, David Littlejohn, Andreas Veronesi, Holger Moch, Stefano Zurrida, L Perey, Nirmala Pathmanathan, Carlo Tondini, Giancarlo Pruneri, Viviana Galimberti, Christian Oehlschlegel, Christoph Rageth, Jack Hoffmann, Richard D. Gelber, John J. Collins, Angelo Recalcati, Marisa Donatella Magri, Andrée Rorive, Bruno Späti, Dimitri Sarlos, Zsuzsanna Varga, Rolf A. Stahel, Mattia Intra, Charlotte Lanng, P. Smart, L. Tan, Anna Cardillo, Francesco Coran, James French, Rudolf Maibach, Manuela Rabaglio, Marco Colleoni, Emilia Montagna, Elisabeth Saurenmann, Elisabeth Elder, Michael Knauer, Samuele Massarut, Mauro Arcicasa, Karin Ribi, Julie Craik, Theresa Zielinski, Wendy Jeanneret Sozzi, Sandro Morassut, Tiziana Rusca, Paul Chin, Elgene Lim, Frances M. Boyle, Richard West, Patrizia Dell'Orto, Umberto Veronesi, Marie-Christine Mathieu, Jean-Remi Garbay, Katrina Moore, Marisa Cristina Leonardi, Gregory Bruce Mann, Donatella Santini, Mario Roncadin, Joëlle Collignon, Michael D. Green, David Moon, Oreste Gentilini, Petere G. Gill, Stephen Allpress, Giulia Peruzzotti, Elga Majdic, Caitlin Mahoney, Karen N. Price, Craig Murphy, Lori Hayes, Melissa Bochner, Lynette Mann, Christoph Tausch, Otto Schiltknecht, Antonino Carbone, Aron Goldhirsch, Giuseppe Cancello, Anand Murugasu, John F. Forbes, Erica Piccoli, Luca Mazzucchelli, Alberto Gianatti, Lucien Zaman, Jose Manuel Cotrina, Per Karlsson, Janez Zgajnar, Diana Crivellari, Birgitte Bruun Rasmussen, Elisabetta Candiago, Manuela Sargenti, Robert Whitfield, Silvia Dellapasqua, R. Ghisini, Meredith M. Regan, Michael Müller, Tiziana Perin, M. Thorburn, Stamatina Fournarakou, Monika Bamert, Malcolm Buchanan, Allison Jones, Gerhard Ries, Andreas Ehrsam, Hugh Carmalt, István Láng, Jürg Bernhard, Guy Jerusalem, Manuela Lagrassa, S. Fiona Bonar, Mario Mileto, Jurij Lindtner, P. Jeal, Fereshte Farshidi, Bernard F. Cole, John Hoerby, James Kollias, Privato Fenaroli, Giovanni Mazzarol, Richard Dyer, Angelo Buonadonna, Heidi Roschitzki, Stefania Andrighetto, Robert Macindoe, Martin F. Fey, Ingrid Kössler, Olivia Pagani, Anita Hiltbrunner, Camelia Chifu, William Ross, Rachele Volpe, Linda Leidi, Barbara Ruepp, Giorgio Caccia, Philippe Delvenne, Susanne Gerred, Tara Scolese, Mario Taffurelli, Paola Baratella, Jean Francois Delaloye, Richard Harman, A. Michael Bilous, Ian G. Campbell, Franco Nolè, Maryse Fiche, Ute Lorenz, Susanne Roux, Roberto Orecchia, Mark Sywak, Aashit Shah, Assia Treboux, Laura Cattaneo, Martina Egli-Tupaj, Rosmarie Caduff, Paolo Veronesi, Linda Madigan, Elena Kralidis, Maj-Lis Moeller Talman, Roswitha Kammler, Michael Töpfer, Eva Juhasz, Peer Schousen, Michele Ghielmini, Snjezana Frkovic-Grazio, Hanne Galatius, Elisabeth Rippy, Sylvie Maweja, Lynette Blacher, Stefan Aebi, D.F. Preece, Gilles Berclaz, Daniel Wyss, D. F. Lindsay, Andreas Günthert, Frederick Mayall, Lucia Bronz, Paul McKenzie, Andrew J. Spillane, Giuseppe Viale, Sandra Lippert, Alberto Luini, Virginia Howard, Giuseppe Curigliano, Rainer Grobholz, Robert Millar, Julio Abugattas, Hans-Anton Lehr, Maria Emanuela Limonta, Monica Iorfida, Elisa Vicini, Helle Holtveg, Angelo Di Leo, Giuseppe Renne, Alan S. Coates, Ezio Candiani, Karolyn Scott, Mauro G. Mastropasqua, Paolo Tricomi, Thomas Gyr, Karen Briscoe, and Viviana Galimberti, Bernard F Cole, Giuseppe Viale, Paolo Veronesi, Elisa Vicini, Mattia Intra, Giovanni Mazzarol, Samuele Massarut, Janez Zgajnar, Mario Taffurelli, David Littlejohn, Michael Knauer, Carlo Tondini, Angelo Di Leo, Marco Colleoni, Meredith M Regan, Alan S Coates, Richard D Gelber, Aron Goldhirsch
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0301 basic medicine ,medicine.medical_specialty ,Time Factors ,medicine.medical_treatment ,Population ,Breast Neoplasms ,Disease-Free Survival ,03 medical and health sciences ,0302 clinical medicine ,Breast cancer ,Risk Factors ,Clinical endpoint ,Medicine ,Humans ,education ,Mastectomy ,education.field_of_study ,business.industry ,Sentinel Lymph Node Biopsy ,Hazard ratio ,Sentinel node ,medicine.disease ,Breast cancer, axillary dissection, IBCSG 23-01, follow up ,Surgery ,Clinical trial ,Axilla ,030104 developmental biology ,medicine.anatomical_structure ,Oncology ,Neoplasm Micrometastasis ,030220 oncology & carcinogenesis ,Lymphatic Metastasis ,Disease Progression ,Lymph Node Excision ,Female ,Sentinel Lymph Node ,business - Abstract
Summary Background We previously reported the 5-year results of the phase 3 IBCSG 23-01 trial comparing disease-free survival in patients with breast cancer with one or more micrometastatic (≤2 mm) sentinel nodes randomly assigned to either axillary dissection or no axillary dissection. The results showed no difference in disease-free survival between the groups and showed non-inferiority of no axillary dissection relative to axillary dissection. The current analysis presents the results of the study after a median follow-up of 9·7 years (IQR 7·8–12·7). Methods In this multicentre, randomised, controlled, open-label, non-inferiority, phase 3 trial, participants were recruited from 27 hospitals and cancer centres in nine countries. Eligible women could be of any age with clinical, mammographic, ultrasonographic, or pathological diagnosis of breast cancer with largest lesion diameter of 5 cm or smaller, and one or more metastatic sentinel nodes, all of which were 2 mm or smaller and with no extracapsular extension. Patients were randomly assigned (1:1) before surgery (mastectomy or breast-conserving surgery) to no axillary dissection or axillary dissection using permuted blocks generated by a web-based congruence algorithm, with stratification by centre and menopausal status. The protocol-specified primary endpoint was disease-free survival, analysed in the intention-to-treat population (as randomly assigned). Safety was assessed in all randomly assigned patients who received their allocated treatment (as treated). We did a one-sided test for non-inferiority of no axillary dissection by comparing the observed hazard ratios (HRs) for disease-free survival with a margin of 1·25. This 10-year follow-up analysis was not prespecified in the trial's protocol and thus was not adjusted for multiple, sequential testing. This trial is registered with ClinicalTrials.gov, number NCT00072293. Findings Between April 1, 2001, and Feb 8, 2010, 6681 patients were screened and 934 randomly assigned to no axillary dissection (n=469) or axillary dissection (n=465). Three patients were ineligible and were excluded from the trial after randomisation. Disease-free survival at 10 years was 76·8% (95% CI 72·5–81·0) in the no axillary dissection group, compared with 74·9% (70·5–79·3) in the axillary dissection group (HR 0·85, 95% CI 0·65–1·11; log-rank p=0·24; p=0·0024 for non-inferiority). Long-term surgical complications included lymphoedema of any grade in 16 (4%) of 453 patients in the no axillary dissection group and 60 (13%) of 447 in the axillary dissection group, sensory neuropathy of any grade in 57 (13%) in the no axillary dissection group versus 85 (19%) in the axillary dissection group, and motor neuropathy of any grade (14 [3%] in the no axillary dissection group vs 40 [9%] in the axillary dissection group). One serious adverse event (postoperative infection and inflamed axilla requiring hospital admission) was attributed to axillary dissection; the event resolved without sequelae. Interpretation The findings of the IBCSG 23-01 trial after a median follow-up of 9·7 years (IQR 7·8–12·7) corroborate those obtained at 5 years and are consistent with those of the 10-year follow-up analysis of the Z0011 trial. Together, these findings support the current practice of not doing an axillary dissection when the tumour burden in the sentinel nodes is minimal or moderate in patients with early breast cancer. Funding International Breast Cancer Study Group.
- Published
- 2018
27. Profiling differential microRNA expression between in situ, infiltrative and lympho-vascular space invasive breast cancer: a pilot study
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Patsy S. Soon, Pamela J. Provan, Dinny Graham, Rosemary L. Balleine, Nirmala Pathmanathan, Edward Kim, and Christine L. Clarke
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0301 basic medicine ,Adult ,Cancer Research ,Lymphovascular invasion ,Breast Neoplasms ,Pilot Projects ,Biology ,03 medical and health sciences ,0302 clinical medicine ,Breast cancer ,Surgical oncology ,Cell Line, Tumor ,Formaldehyde ,microRNA ,medicine ,Humans ,Neoplasm Invasiveness ,skin and connective tissue diseases ,neoplasms ,Aged ,Tissue microarray ,Paraffin Embedding ,Reverse Transcriptase Polymerase Chain Reaction ,Gene Expression Profiling ,Carcinoma, Ductal, Breast ,Reproducibility of Results ,General Medicine ,Ductal carcinoma ,Middle Aged ,medicine.disease ,Neoplasm Proteins ,body regions ,MicroRNAs ,030104 developmental biology ,Carcinoma, Intraductal, Noninfiltrating ,Oncology ,030220 oncology & carcinogenesis ,Lymphatic Metastasis ,Cancer cell ,Axilla ,Cancer research ,Disease Progression ,Immunohistochemistry ,Blood Vessels ,Lymph Node Excision ,Female ,Lymph Nodes - Abstract
Ductal carcinoma in situ (DCIS), invasive breast cancer (IBC) and lympho-vascular invasion (LVI) represent distinct stages in breast cancer progression with different clinical implications. Altered microRNA (miRNA) expression may play a role in mediating the progression of DCIS to IBC and LVI. The aim of this pilot study was to investigate whether differential miRNA expression could play a role in breast cancer progression. Cancer cells from DCIS, IBC and LVI were microdissected from formalin fixed paraffin embedded (FFPE) tissue of five breast cancer samples. MiRNA profiling of extracted RNA was performed using the TaqMan® Array Human MicroRNA Cards A and B v3.0. Candidate miRNAs and gene targets were validated by qPCR. 3D culture of MCF10A, MCF10DCIS.com and T47D cells were used as models for normal, DCIS and IBC. Immunohistochemistry of candidate genes was performed on FFPE 3D cell cultures as well as on tissue microarray which included cores of DCIS and IBC samples. MiR-150, miR-126 and miR-155 were found to be more highly expressed in IBC and LVI compared to DCIS. Gene targets of these miRNAs, RhoA, PEG10 and MYB, were found to be more highly expressed in DCIS compared to IBC by qPCR and in MCF10A and MCF10DCIS.com cells compared to T47D cells by immunohistochemistry. There was no difference in intensity of staining of RhoA by immunohistochemistry in DCIS versus IBC samples on tissue microarray. In this pilot study, we found evidence to support a potential role for variation in miRNA levels in the transition from DCIS to IBC.
- Published
- 2017
28. Intraoperative sentinel lymph node assessment in breast cancer: a comparison of rapid diagnostic method based on CK19 mRNA expression and imprint cytology
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James French, Christina Hui‐Leng Teh, Michael Bilous, Jasveen Renthawa, Nirmala Pathmanathan, Hema Mahajan, Elizabeth Edstrom-Elder, and Geoffrey Hall
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medicine.medical_specialty ,Pathology ,business.industry ,Sentinel lymph node ,H&E stain ,General Medicine ,Nucleic acid amplification technique ,Sentinel node ,medicine.disease ,Axilla ,Breast cancer ,medicine.anatomical_structure ,Cytology ,medicine ,Surgery ,Radiology ,business ,Cancer staging - Abstract
Background Sentinel lymph node biopsy in breast cancer is a routine technique for staging the axilla. The two most common methods of intraoperative histopathological assessment, imprint cytology and frozen section, are hampered by poor sensitivity and lack standardized methodology. The one-step nuclei acid amplification (OSNA) assay is a rapid quantification of cytokeratin 19 mRNA. This prospective study compared an existing intraoperative imprint cytology protocol with the OSNA system. Methods Of the 110 prospectively recruited patients, 98 met the inclusion criteria with a total of 170 lymph nodes. Intraoperative sentinel nodes were serially sectioned and imprints made of each cut surface for cytological assessment. Alternate slices were submitted for OSNA while the remaining slices were for final histopathological evaluation with six hematoxylin and eosin levels and one AE1/AE3 immunoperoxidase stain of each slice. Results On histopathological analysis, 24.5% of patients (16.5% of nodes) had sentinel node metastases and 3.1% (2.4%) had isolated tumour cells. With isolated tumour cells cases taken as negative, the sensitivity of imprint cytology and OSNA compared with histopathology were 66.7% on patient basis (71.4% on per-node basis) and 95.8% (89.3%), respectively. One of 22 patients with macrometastases and two of three micrometastases were designated negative while five false-positive nodes were identified with OSNA, likely due to tissue allocation bias. Conclusion The OSNA assay is highly sensitive in comparison with imprint cytology and may be used effectively in the intraoperative setting. Clinical follow-up studies are warranted to further assess its use in routine practice.
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- 2014
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29. B cell lymphoma, unclassifiable, with features intermediate between diffuse large B cell lymphoma and classical hodgkin lymphoma: Diagnosis by fine-needle aspiration cytology
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Nirmala Pathmanathan, Winny Varikatt, and Kyaw Lynnhtun
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Pathology ,medicine.medical_specialty ,Histology ,CD30 ,Mediastinal lymphadenopathy ,medicine.diagnostic_test ,business.industry ,General Medicine ,medicine.disease ,Pathology and Forensic Medicine ,Immunophenotyping ,immune system diseases ,hemic and lymphatic diseases ,Biopsy ,medicine ,business ,B-cell lymphoma ,Epithelioid cell ,Diffuse large B-cell lymphoma ,Histiocyte - Abstract
A 58-year-old lady presented with mediastinal lymphadenopathy. A thoracoscopic ultrasound-guided fine-needle aspiration showed large atypical epithelioid cells arranged in cohesive sheets and dispersed as single cells with intact cytoplasm amid a background of lymphocytes and histiocytes. A cytological diagnosis of "a malignant neoplasm" was made, raising a broad list of differential diagnoses. A broad panel of immunocytochemical stains performed on the cell block was indicative of a lymphoproliferative disorder, but the immunophenotype was intermediate between diffuse large B cell lymphoma (DLBCL) and classical Hodgkin lymphoma (cHL). Diffuse and strong reactivity to CD20, CD79a, and PAX-5, and weak reactivity to CD30, was in favor of a DLBCL, or more precisely mediastinal (thymic) large B cell lymphoma (MLBL). However, there were negative staining for LCA, OCT-2, and BOB-1 as well as positive staining for EBV-encoded RNA, which were against a diagnosis of MLBL and raised the possibility of cHL. The absence of RS cells and the typical mileu, the negativity for CD15 and the strong positivity of CD20 and PAX-5 were against a diagnosis of cHL. On this basis, the diagnosis of "B-cell lymphoproliferative disorder with features intermediate between DLBCL and cHL" was rendered. The diagnosis was subsequently confirmed on excisional biopsy. This case report demonstrates broad differential diagnoses raised by this diagnostic entity and the importance of an adequate cell block for accurate designation.
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- 2013
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30. Human epidermal growth factor receptor 2 status of gastric cancer patients in Asia: results from a large, multicountry study
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Nirmala, Pathmanathan, Jing-Shu, Geng, Wencai, Li, Xiu, Nie, Januario, Veloso, John, Wang, Julie, Hill, Philip, Mccloud, and Michael, Bilous
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Adult ,Male ,Asia ,Receptor, ErbB-2 ,Stomach Neoplasms ,Incidence ,Humans ,Female ,Middle Aged ,Immunohistochemistry - Abstract
Current estimates of the human epidermal growth factor receptor 2 (HER2)-positivity rate in gastric cancer vary widely in the literature, and there are limited data from countries in Asia. The primary aim of this study was to conduct a clinical audit of laboratories across seven countries in Asia to determine the incidence of HER2-positive gastric cancer in this region.Pathologists were asked to collect data on patient gender, age, cancer site, specimen type, tumor spread, type and grade, HER2 test results, including protein and/or gene copy enumeration, and final HER2 status on consecutive gastric cancer cases tested for HER2 in their laboratory over a 2-year period.HER2 results from 5,301 gastric cancers were submitted by 50 laboratories. The overall HER2-positivity rate was 9.7% which, after the exclusion of China, increased to 18.1%. The rate between countries ranged from 0% to 23.1%, and from 0% to 50.0% between laboratories. An equivocal HER2 result was recorded in 19.5% of cases.Despite the lack of centralized testing to confirm the accuracy of HER2 diagnoses, the incidence of HER2-positive gastric cancer observed here was comparable to that reported in the literature. Nevertheless, rates were highly variable between countries and laboratories, which suggests a lack of HER2 testing expertise in gastric cancer. Given that the mortality rates for gastric cancer in Eastern Asia are the highest in the world, efforts should focus on improving HER2 testing expertise in the region so that patients receive the appropriate treatment early in their disease.
- Published
- 2016
31. Axillary reverse mapping in patients with breast cancer: Is it oncologically safe?
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Nicholas K, Ngui, James, French, Christopher J, Kilby, Nirmala, Pathmanathan, and Elisabeth E, Elder
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Adult ,Carcinoma, Ductal, Breast ,Breast Neoplasms ,Middle Aged ,Carcinoma, Lobular ,Lymphatic Metastasis ,Axilla ,Rosaniline Dyes ,Humans ,Lymph Node Excision ,Female ,Lymph Nodes ,Prospective Studies ,Coloring Agents ,Aged - Abstract
Axillary reverse mapping (ARM) is a technique used to identify the lymphatics draining the arm. The aim of this study was to examine the prevalence and predictors of ARM node metastases in breast cancer patients undergoing an axillary lymph node dissection (ALND).A total of 87 patients were enrolled in this study. Patent V Blue dye was injected in the upper arm for ARM node localization. All patients had an ALND with the identified ARM node removed and sent separately for histologic analysis.Of 67 (77%) patients in whom an ARM node was identified, 49 (73%) were negative and 18 (27%) were positive for metastases on final histopathology. Positive ARM node status was significantly associated with advanced axillary disease, and larger primary cancers. Patients requiring a completion ALND due to a positive sentinel lymph node biopsy (SLNB) with non-suspicious ARM nodes during surgery did not have ARM node metastases.There is a high risk of ARM node involvement, approximately a quarter, in patients with preoperatively known lymph node metastases from breast cancer. However, it may be safe to preserve a clinically non-suspicious ARM node in patients with a positive SLNB who require a completion ALND. J. Surg. Oncol. 2016;113:726-731. © 2016 Wiley Periodicals, Inc.
- Published
- 2016
32. HER2 testing in breast cancer: an overview of current techniques and recent developments
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Nirmala Pathmanathan and Michael Bilous
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Pathology ,medicine.medical_specialty ,Receptor, ErbB-2 ,Emerging technologies ,Breast Neoplasms ,Biology ,Pathology and Forensic Medicine ,Breast cancer ,Biomarkers, Tumor ,medicine ,Humans ,In patient ,Medical physics ,In Situ Hybridization ,Polysomy ,business.industry ,Prognosis ,medicine.disease ,Immunohistochemistry ,Gene Expression Regulation, Neoplastic ,Knowledge base ,Karyotyping ,In situ hybridisation ,Referral centre ,%22">Fish ,Female ,business ,Multiplex Polymerase Chain Reaction ,Chromosomes, Human, Pair 17 - Abstract
Summary Testing for HER2 positivity in breast cancer carries implications for prognosis and therapeutic response in patients. In recent times there have been numerous developments and refinements in the available technologies for HER2 testing. In addition to this, guidelines have been developed and modified in an attempt to improve reliability and accuracy of testing. Immunohistochemistry and FISH testing have been the most widely used methodology, and the technique which has the largest knowledge base. Some of the inherent disadvantages have prompted the development of newer brightfield techniques which overcome some of these issues. There is gathering experience with these emerging technologies. Despite efforts to optimise and standardise procedures there remains a small percentage of cases that continue to be unresolved, whether this be due to issues of polysomy of chromosome 17, other complex genetic changes or analytical/interpretative issues. An ideal method for the resolution of these equivocal results should be considered in a specialised testing/referral centre, and this may include karyotyping studies of chromosome 17 or multiple probes for chromosome 17 using fluorescence in situ hybridisation or multiplex ligation-dependent probe amplification. It is timely to review of some of the newer techniques available for routine testing and approaches for cases which prove difficult to resolve using conventional testing methodology.
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- 2012
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33. Microglandular adenosis with transition to breast carcinoma: a series of three cases
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Nirmala Pathmanathan and Lisa Lin
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Oncology ,medicine.medical_specialty ,Microglandular adenosis ,business.industry ,Internal medicine ,medicine ,Breast carcinoma ,business ,Pathology and Forensic Medicine - Published
- 2011
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34. Familial concordance of breast cancer pathology as an indicator of genotype in multiple-case families
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Margaret C. Cummings, Graham J. Mann, Karen Byth, Nirmala Pathmanathan, A. Michael Bilous, Elizabeth Salisbury, Pamela J. Provan, Gulietta M. Pupo, Rosemary L. Balleine, and Gelareh Farshid
- Subjects
Genetic Markers ,Risk ,Cancer Research ,Pathology ,medicine.medical_specialty ,Genotype ,endocrine system diseases ,Genetic Linkage ,Concordance ,Genes, BRCA2 ,Genes, BRCA1 ,Estrogen receptor ,Breast Neoplasms ,Genome-wide association study ,Biology ,medicine.disease_cause ,Polymorphism, Single Nucleotide ,Breast cancer ,Risk Factors ,Genetics ,medicine ,Cluster Analysis ,Humans ,Genetic Predisposition to Disease ,Receptor, Fibroblast Growth Factor, Type 2 ,skin and connective tissue diseases ,Genetic Association Studies ,Family Health ,Linkage (software) ,Mutation ,medicine.disease ,SNP genotyping ,Phenotype ,Female - Abstract
The heterogeneity of multiple case breast cancer families that do not carry mutations in BRCA1 or BRCA2 (non-BRCA1/2 families) poses a challenge to the identification of breast cancer susceptibility genes. The aim of this study was to determine whether intrafamilial concordance in breast cancer pathology could identify subgroups of non-BRCA1/2 families with consistent genotypic features. Invasive breast cancers were reviewed from 84 individuals belonging to 30 multiple-case families; BRCA1 (n = 9), BRCA2 (n = 10), and non-BRCA1/2 (n = 11). Hierarchical cluster analysis based on histopathology and age at first diagnosis was then used to specify three subgroups designated Clusters 1-3. The genomic features of non-BRCA1/2 families were examined by genome wide linkage and FGFR2 SNP genotyping, according to whether they showed cluster-concordant or cluster-mixed familial pathology. The majority of pathogenic BRCA1 mutation carriers (80%) fell into a single cluster. In contrast pathogenic BRCA2 mutation carriers were distributed across all three clusters and within families, cluster groups were also generally mixed. Most non-BRCA1/2 mutation carriers belonged to Cluster 3 (71%). Genome wide linkage data from five non-BRCA1/2 Cluster 3-concordant families were compared with four mixed cluster non-BRCA1/2 families. This revealed a number of distinct linkage peaks, including some regions previously associated with breast cancer susceptibility. The distribution of low risk alleles in FGFR2 was not different between these two subgroups (P = 0.237). The pattern of breast cancer pathology concordance amongst family members may assist the investigation of breast cancer susceptibility in multiple case families.
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- 2010
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35. Diagnostic evaluation of papillary lesions of the breast on core biopsy
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Nirmala Pathmanathan, Ann-Flore Albertini, Pamela J. Provan, Karen Byth, Jane S. Milliken, Elizabeth Salisbury, A. Michael Bilous, and Rosemary L. Balleine
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medicine.medical_specialty ,Pathology ,Biopsy ,Breast Neoplasms ,Asymptomatic ,Pathology and Forensic Medicine ,Papilloma, Intraductal ,Basal (phylogenetics) ,Cytokeratin ,Biomarkers, Tumor ,medicine ,Humans ,business.industry ,Carcinoma, Ductal, Breast ,medicine.disease ,Immunohistochemistry ,Carcinoma, Papillary ,Staining ,Biomarker (medicine) ,Papilloma ,Female ,Radiology ,medicine.symptom ,business ,Core biopsy - Abstract
The management of asymptomatic intraductal papillary lesions of the breast diagnosed on core biopsy poses a challenge for patients and clinicians, as the distinction between common benign lesions and atypical or malignant varieties may be difficult without formal excision. The aim of this study was to determine whether a combination of histopathologic and biomarker features could be used to accurately identify benign papillary lesions on core biopsy. An inclusive group of 127 excised papillary lesions was characterized by detailed histopathologic review and immunohistochemical staining for the basal markers cytokeratin 5/6 (CK5/6) and P63 and the proliferation marker Ki67. Comparison of benign, atypical, and malignant lesions revealed that the combination of broad, sclerotic fibrovascular cores, and epithelial CK5/6 staining was most commonly seen in benign papillomas. Ki67 staining revealed striking intralesional heterogeneity, but there was no difference between the high scores of benign, atypical, or malignant lesions (P=0.173). In a non-overlapping set of 42 cases, a binary classifier specifying benign lesions on the basis of thick fibrovascular cores and epithelial CK5/6 staining on core biopsy gave an overall misclassification rate of 4/42 (10%) when compared with the final excision diagnosis. Misclassified cases included 2/27 lesions ultimately diagnosed as benign and 2/2 atypical papillomas. All malignant lesions (n=13) were correctly assigned. The combined assessment of fibrovascular core thickness and CK5/6 staining on core biopsy distinguished benign from malignant papillary lesions, but did not separate benign from atypical cases. This approach may form a useful addition to the clinicopathologic evaluation of papillary lesions of the breast.
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- 2010
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36. A class discovery and class prediction approach to histopathological classification of mammographic screen detected columnar cell lesions of the breast
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Elizabeth Salisbury, Karen Byth, Nirmala Pathmanathan, A. Michael Bilous, Christine L. Clarke, Pamela J. Provan, Jane S. Milliken, and Rosemary L. Balleine
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medicine.medical_specialty ,Pathology ,Biopsy ,Breast Neoplasms ,Columnar Cell ,Biology ,Pathology and Forensic Medicine ,Biomarkers, Tumor ,medicine ,Cluster Analysis ,Humans ,Mammography ,Breast ,Nuclear atypia ,Cell Nucleus ,Hyperplasia ,Screen detected ,medicine.diagnostic_test ,Calcinosis ,Epithelial Cells ,medicine.disease ,Class prediction ,Ki-67 Antigen ,Female ,Histopathology ,Microcalcification ,medicine.symptom ,Precancerous Conditions - Abstract
Columnar cell lesions (CCLs) of the breast have been increasingly recognised in biopsies taken to investigate mammographic screen detected microcalcification. The aim of this study was to identify distinct CCL subtypes by systematic analysis of histopathology.Hierarchical cluster analysis was performed based on the profile of histopathological features in 102 screen detected CCLs. Features assessed included nuclear morphology, acinar dilatation, epithelial cell hyperplasia, cell crowding, apical snout formation and intraluminal secretion. The stability of this classification was tested in an independent cohort of 32 cases.The histopathology of screen detected CCLs was extremely variable. Hierarchical cluster analysis identified two subclasses: Class 1 (34/102, 33%) characterised by absence of nuclear atypia and less pronounced hyperplasia; and Class 2 (68/102, 67%) that were generally more atypical. Ki-67 scores were significantly lower for Class 1 CCLs (p0.001). In the independent cohort of 32 cases, Class 1 cases were clearly distinguished from Class 2, indicating that these were stable phenotypes amongst screen detected CCLs.The histopathological features of CCLs diagnosed at screening are extremely heterogeneous. Using a systematic approach, we have devised a broad classification system that delineates a category of less atypical CCLs that could form a basis for future studies.
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- 2010
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37. Predicting discordant HER2 results in ipsilateral synchronous invasive breast carcinomas: experience from a single institution
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Nirmala Pathmanathan, Tayyaba Khan, Shaun Chou, and Hema Mahajan
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Pathology ,medicine.medical_specialty ,Receptor, ErbB-2 ,Breast Neoplasms ,Disease ,Biology ,medicine.disease ,Pathology and Forensic Medicine ,Neoplasms, Multiple Primary ,Breast cancer ,Carcinoma, Intraductal, Noninfiltrating ,In situ hybridisation ,Carcinoma ,medicine ,Humans ,Female ,Neoplasm Invasiveness ,Oestrogen receptor ,Single institution ,skin and connective tissue diseases ,Radiation treatment planning ,neoplasms ,Human Epidermal Growth Factor Receptor 2 ,In Situ Hybridization - Abstract
With the emergence of multiple lines of highly effective Human Epidermal Growth Factor Receptor 2 (HER2) directed therapy, accurate identification of HER2 positive tumour has become a critical aspect in the histopathological analysis of breast cancers. Multifocal invasive breast carcinomas are relatively common, and given the aggressive inherent biology of HER2 positive disease, identification of even small tumours with HER2 positive status may be of importance for treatment planning. There are currently no clear guidelines as to whether all of these foci should be tested for HER2 status. We reviewed the results of 172 patients in whom HER2 in situ hybridisation (ISH) testing was performed on at least two ipsilateral synchronous invasive carcinomas. Discordant results in different invasive foci were relatively uncommon and occurred in only eight (5%) of the 172 patients. This showed a statistically significant correlation with similarly discordant oestrogen receptor (ER) results. In addition HER2 discordance was more likely amongst different tumour foci if these arose in distinct and separate areas of DCIS. An algorithm based on a combination of College of American Pathologists (CAP) recommendation for HER2 testing, differing ER status and background DCIS profile may be useful in detecting these discordant cases.
- Published
- 2015
38. Human epidermal growth factor receptor 2 status of breast cancer patients in Asia: Results from a large, multicountry study
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Julie Hill, Michael Bilous, Wencai Li, Nirmala Pathmanathan, Januario Veloso, Philip McCloud, Jing-shu Geng, and Xiu Nie
- Subjects
0301 basic medicine ,Clinical audit ,Adult ,medicine.medical_specialty ,Asia ,Receptor, ErbB-2 ,Gene copy ,Breast Neoplasms ,Disease ,03 medical and health sciences ,0302 clinical medicine ,Breast cancer ,Internal medicine ,medicine ,Humans ,skin and connective tissue diseases ,neoplasms ,Human Epidermal Growth Factor Receptor 2 ,Gynecology ,business.industry ,Incidence (epidemiology) ,Mortality rate ,Incidence ,Cancer ,General Medicine ,Middle Aged ,medicine.disease ,United States ,030104 developmental biology ,Oncology ,030220 oncology & carcinogenesis ,Female ,business - Abstract
Aim Current estimates of the human epidermal growth factor receptor 2 (HER2)-positivity rate in gastric cancer vary widely in the literature, and there are limited data from countries in Asia. The primary aim of this study was to conduct a clinical audit of laboratories across seven countries in Asia to determine the incidence of HER2-positive gastric cancer in this region. Methods Pathologists were asked to collect data on patient gender, age, cancer site, specimen type, tumor spread, type and grade, HER2 test results, including protein and/or gene copy enumeration, and final HER2 status on consecutive gastric cancer cases tested for HER2 in their laboratory over a 2-year period. Results HER2 results from 5,301 gastric cancers were submitted by 50 laboratories. The overall HER2-positivity rate was 9.7% which, after the exclusion of China, increased to 18.1%. The rate between countries ranged from 0% to 23.1%, and from 0% to 50.0% between laboratories. An equivocal HER2 result was recorded in 19.5% of cases. Conclusion Despite the lack of centralized testing to confirm the accuracy of HER2 diagnoses, the incidence of HER2-positive gastric cancer observed here was comparable to that reported in the literature. Nevertheless, rates were highly variable between countries and laboratories, which suggests a lack of HER2 testing expertise in gastric cancer. Given that the mortality rates for gastric cancer in Eastern Asia are the highest in the world, efforts should focus on improving HER2 testing expertise in the region so that patients receive the appropriate treatment early in their disease.
- Published
- 2015
39. Histiocytoid Change in Breast Carcinoma
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Elizabeth Salisbury, Nirmala Pathmanathan, and Rajmohan Murali
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medicine.medical_specialty ,Pathology ,Histology ,business.industry ,Apocrine ,Anatomical pathology ,General Medicine ,medicine.disease ,Malignancy ,Pathology and Forensic Medicine ,Breast cancer ,Invasive lobular carcinoma ,medicine ,Granular cytoplasm ,skin and connective tissue diseases ,Breast carcinoma ,Hyperchromasia ,business - Abstract
Background Breast carcinomas composed predominantly or exclusively of cells with foamy and/or granular cytoplasm have been teamed histiocytoid breast carcinoma (HBC). Cases Three cases of HBC had fine needle aspirates that were moderately cellular and composed of cells with abundant foamy and/or granular cytoplasm, arranged in loosely cohesive groups and dispersed singly. The cells shirked subtle cytologic atypia, including nuclear hyperchromasia and slightly irregular nuclear outlines. Definitive cytologic diagnosis was not possible in the ) cases, and they were reported as "suspicions for malignancy." Core biopsies of 2 cases showed a typical Indian file pattern of invasive lobular carcinoma, while the third case was composed of sheets of discohesive histiocytoid cells admixed with a prominent lymphoid infiltrate. All 3 cases were E-cadherin negative, confirming their lobular nature. Conclusion HBC represents an unusual morphologic pattern of apocrine change that may be seen in lobular and ductal breast carcinomas. Recognition of these lesions is vital in that they may he mistaken for a variety of other entities composed of foamy/granular cells; some of those entities have vastly different implications for treatment and prognosis.
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- 2006
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40. A Thermochromic Dispersive Electrode Can Measure the Underlying Skin Temperature and Prevent Burns During Radiofrequency Ablation
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Aravinda Thiagalingam, Elizabeth Salisbury, Jim Pouliopoulos, Nirmala Pathmanathan, Pramesh Kovoor, Anita Boyd, David L. Ross, and Michael A. Barry
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Male ,medicine.medical_specialty ,Radiofrequency ablation ,medicine.medical_treatment ,Analytical chemistry ,law.invention ,law ,Physiology (medical) ,Skin surface ,medicine ,Animals ,Temperature difference ,Electrodes ,Skin ,Thermochromism ,Sheep ,business.industry ,Skin temperature ,respiratory system ,Atmospheric temperature range ,Ablation ,Surgery ,Electrode ,Catheter Ablation ,Burns ,Skin Temperature ,Cardiology and Cardiovascular Medicine ,business - Abstract
UNLABELLED Evaluation of a thermochromic dispersive electrode. INTRODUCTION Burns at the dispersive electrode are serious complications of diathermy and radiofrequency (RF) ablation procedures. We aimed to create a new methodology to reduce the incidence of dispersive electrode related skin burns. We hypothesized that a dispersive electrode incorporating a thermochromic liquid crystal (TLC) layer could accurately measure underlying skin temperatures and help prevent burns. METHODS AND RESULTS The TLC electrode was compared with a standard dispersive electrode in 12 male sheep. RF current was delivered with the dispersive electrode fully applied or partially detached to simulate different clinical scenarios. The temperature of the TLC layer, calculated from the hue (color) every 15 seconds, was compared with fluoroptic skin temperature probes. TLC electrodes with a temperature range of 45-58 degrees C were used in six sheep to assess the correlation of TLC temperature distribution with skin temperature and burns. TLC electrodes with a temperature range of 40-50 degrees C were used in another 6 sheep to simulate clinical conditions in which the ablation was stopped if the TLC temperature was >42 degrees C. The TLC measured temperatures correlated well with fluoroptic probes at the skin surface (r=0.94+/-0.05, mean of the absolute difference in temperature difference 0.9+/-0.58 degrees C). Ablations with partial application of standard dispersive electrodes consistently caused skin burns. There were no burns under the TLC electrode when ablations were ceased for temperatures>42 degrees C. CONCLUSIONS TLC-equipped dispersive electrodes were able to accurately measure skin temperature under the electrode. This technology is likely to prevent dispersive electrode related burns.
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- 2005
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41. High concordance rate of HER2 status assessed via silver in situ hybridisation (SISH) between core biopsy and excision specimens: a 4 year retrospective review from a single institution
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Shaun Chou and Nirmala Pathmanathan
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Retrospective review ,medicine.medical_specialty ,Silver Staining ,business.industry ,Receptor, ErbB-2 ,Concordance ,Breast Neoplasms ,Pathology and Forensic Medicine ,Surgery ,In situ hybridisation ,Medicine ,Humans ,Female ,Radiology ,Biopsy, Large-Core Needle ,Single institution ,business ,Core biopsy ,In Situ Hybridization ,Retrospective Studies - Published
- 2014
42. Intraoperative sentinel lymph node assessment in breast cancer: a comparison of rapid diagnostic method based on CK19 mRNA expression and imprint cytology
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Nirmala, Pathmanathan, Jasveen, Renthawa, James R, French, Elizabeth, Edstrom-Elder, Geoffrey, Hall, Hema, Mahajan, Christina, Teh, and Michael A, Bilous
- Subjects
Adult ,Aged, 80 and over ,Keratin-19 ,Intraoperative Care ,Sentinel Lymph Node Biopsy ,Breast Neoplasms ,Middle Aged ,Sensitivity and Specificity ,Immunoenzyme Techniques ,Lymphatic Metastasis ,Frozen Sections ,Humans ,Lymph Node Excision ,Female ,Prospective Studies ,RNA, Messenger ,Nucleic Acid Amplification Techniques ,Aged ,Neoplasm Staging - Abstract
Sentinel lymph node biopsy in breast cancer is a routine technique for staging the axilla. The two most common methods of intraoperative histopathological assessment, imprint cytology and frozen section, are hampered by poor sensitivity and lack standardized methodology. The one-step nuclei acid amplification (OSNA) assay is a rapid quantification of cytokeratin 19 mRNA. This prospective study compared an existing intraoperative imprint cytology protocol with the OSNA system.Of the 110 prospectively recruited patients, 98 met the inclusion criteria with a total of 170 lymph nodes. Intraoperative sentinel nodes were serially sectioned and imprints made of each cut surface for cytological assessment. Alternate slices were submitted for OSNA while the remaining slices were for final histopathological evaluation with six hematoxylin and eosin levels and one AE1/AE3 immunoperoxidase stain of each slice.On histopathological analysis, 24.5% of patients (16.5% of nodes) had sentinel node metastases and 3.1% (2.4%) had isolated tumour cells. With isolated tumour cells cases taken as negative, the sensitivity of imprint cytology and OSNA compared with histopathology were 66.7% on patient basis (71.4% on per-node basis) and 95.8% (89.3%), respectively. One of 22 patients with macrometastases and two of three micrometastases were designated negative while five false-positive nodes were identified with OSNA, likely due to tissue allocation bias.The OSNA assay is highly sensitive in comparison with imprint cytology and may be used effectively in the intraoperative setting. Clinical follow-up studies are warranted to further assess its use in routine practice.
- Published
- 2014
43. The prognostic value of Ki67 in systemically untreated patients with node-negative breast cancer
- Author
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John Boyages, Kellie Bilinski, Nirmala Pathmanathan, Elizabeth Salisbury, Pamela J. Provan, A. Michael Bilous, Rosemary L. Balleine, Upali W Jayasinghe, and Karen Byth
- Subjects
Oncology ,Adult ,Pathology ,medicine.medical_specialty ,Time Factors ,medicine.medical_treatment ,Breast Neoplasms ,Kaplan-Meier Estimate ,Mastectomy, Segmental ,Pathology and Forensic Medicine ,Cytokeratin ,Breast cancer ,Predictive Value of Tests ,Risk Factors ,Internal medicine ,Progesterone receptor ,medicine ,Breast-conserving surgery ,Odds Ratio ,Humans ,skin and connective tissue diseases ,Grading (tumors) ,Proportional Hazards Models ,Univariate analysis ,Chi-Square Distribution ,biology ,business.industry ,General Medicine ,Middle Aged ,medicine.disease ,Immunohistochemistry ,Ki-67 Antigen ,Treatment Outcome ,Ki-67 ,Lymphatic Metastasis ,Cohort ,Multivariate Analysis ,biology.protein ,Female ,Radiotherapy, Adjuvant ,business - Abstract
Aim To evaluate the utility of Ki67 as a prognostic marker in a series of patients with node-negative breast cancer untreated with adjuvant systemic therapy. Methods The cohort consisted of 203 cases treated with breast conserving surgery and radiation only; median follow-up was 183 months (range 156–277 months). An immunohistochemical panel of oestrogen receptor (ER), progesterone receptor (PR), cytokeratin (CK)5/6 and Ki67 and human epidermal growth factor 2 in situ hybridization (HER2-ISH) was performed on the tumour samples. Ki67 scores were evaluable in 193/203 patients (95.1%). The primary outcome was breast cancer specific survival (BCSS). Results Of the cohort, 29 (14.2%) died of breast cancer. A cut off of 10% separated tumours into a ‘Ki67-low’ (n=70) or ‘Ki67-high’ group (n=123). The breast cancer specific survival was 97.1% and 77.6% for Ki67-low and Ki67-high groups, respectively. Univariate analysis showed that in this lymph node-negative cohort, the predictors for BCSS were tumour size, Ki67, LVI, age and histological grade 3. Multivariable analysis showed that Ki67 index and lymphovascular space invasion were independent predictors of breast cancer death. To examine the utility of Ki67 in assignment of immunohistochemically molecular subtypes, cases were assigned into Luminal A (ER-positive, HER2-negative, Ki67 ≤14%), Luminal B (ER-positive, HER2-negative, Ki67 >14%) and triple negative (ER/PR-negative and HER2-negative, any Ki67). The 15-year breast cancer specific survival was 91.7%, 79.4% and 75.8%, respectively. Conclusions A statistically significant difference in breast cancer specific survival is seen in groups defined using Ki67 and receptor status, whereas histological grading was not a significant predictor of survival. Ki67 immunostaining provides prognostic information beyond traditionally assessed clinicopathological variables.
- Published
- 2014
44. Genome-wide association study identifies 25 known breast cancer susceptibility loci as risk factors for triple-negative breast cancer
- Author
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Arif B. Ekici, MW Reed, S. Keith Anderson, Celine M. Vachon, Robert Pilarski, Graham G. Giles, Xianshu Wang, Susan L. Slager, Priyanka Sharma, Curtis Olswold, Dimitrios Pectasides, Douglas F. Easton, Drakoulis Yannoukakos, Sandra Deming-Halverson, Sajjad Rafiq, Christine B. Ambrosone, Matthias Ruebner, Jo Ellen Weaver, Melissa C. Southey, Brigitte Rack, Paul J. Goodfellow, Thaer Khoury, Vernon S. Pankratz, Wei Zheng, S Gerty, Martha J. Shrubsole, Ruediger Schulz-Wendtland, Alexander Hein, Jennifer Ivanovich, George Fountzilas, Stefan Nickels, Hugues Sicotte, Diana Eccles, Simon S. Cross, Seth W. Slettedahl, Christoph Scholz, Matthias W. Beckmann, Dieter Flesch-Janys, Jianjun Liu, Meletios A. Dimopoulos, Päivi Heikkilä, Hoda Anton-Culver, Wolfgang Janni, Julia Neugebauer, Veli-Matti Kosma, Hans Ulrich Ulmer, Charles L. Shapiro, Janet E. Olson, James N. Ingle, Andrew K. Godwin, Nicholas G. Martin, Kristiina Aittomäki, Arndt Hartmann, Irene Konstantopoulou, Thomas Rüdiger, Angela Cox, Mary B. Daly, Hiltrud Brauch, Carl Blomqvist, Nirmala Pathmanathan, Dimosthenis Skarlos, William J. Tapper, Ulrich Andergassen, Heli Nevanlinna, Irene Konstanta, Athanassios Vratimos, Heidrun Wölfing, Sotiris Lakis, Asta Försti, Florentia Fostira, Jenny Chang-Claude, Christine L. Clarke, Dario Greco, Gianluca Severi, Xiao-Ou Shu, Lothar Haeberle, Jennifer R. Klemp, Shicha Kumar, Diana Torres, Argyrios Ziogas, Anja Rudolph, Hans Fischer, Arto Mannermaa, Victoria Cafourek, Vessela N. Kristensen, Eric A. Ross, Paraskevi Apostolou, Leslie Bernstein, Vassiliki Kotoula, Laura Baglietto, Elisabete Weiderpass, Kristen S. Purrington, Qiuyin Cai, Lorraine Durcan, Jane Carpenter, Jeanette E. Eckel-Passow, Grant W. Montgomery, Peter A. Fasching, Stefan P. Renner, Astrid Irwanto, Fergus J. Couch, Penelope Miron, Ute Hamann, Naresh Prodduturi, Amanda E. Toland, Michael P. Lux, Daniel W. Visscher, and Per Hall
- Subjects
Oncology ,Adult ,medicine.medical_specialty ,Cancer Research ,Quantitative Trait Loci ,Estrogen receptor ,Genome-wide association study ,Original Manuscript ,Triple Negative Breast Neoplasms ,Biology ,Bioinformatics ,Polymorphism, Single Nucleotide ,Chromosomes ,Young Adult ,Breast cancer ,Medizinische Fakultät ,Internal medicine ,medicine ,Aged ,Aged, 80 and over ,Case-Control Studies ,Chromosomes, Human, Pair 19 ,Estrogen Receptor alpha ,Female ,Humans ,Middle Aged ,Genetic Predisposition to Disease ,Genome-Wide Association Study ,80 and over ,ddc:610 ,Polymorphism ,Triple-negative breast cancer ,Pair 19 ,Cancer ,General Medicine ,Single Nucleotide ,medicine.disease ,3. Good health ,TOX3 ,TCF7L2 ,Human - Abstract
Triple-negative (TN) breast cancer is an aggressive subtype of breast cancer associated with a unique set of epidemiologic and genetic risk factors. We conducted a two-stage genome-wide association study of TN breast cancer (stage 1: 1529 TN cases, 3399 controls; stage 2: 2148 cases, 1309 controls) to identify loci that influence TN breast cancer risk. Variants in the 19p13.1 and PTHLH loci showed genome-wide significant associations (P < 5 × 10(-) (8)) in stage 1 and 2 combined. Results also suggested a substantial enrichment of significantly associated variants among the single nucleotide polymorphisms (SNPs) analyzed in stage 2. Variants from 25 of 74 known breast cancer susceptibility loci were also associated with risk of TN breast cancer (P < 0.05). Associations with TN breast cancer were confirmed for 10 loci (LGR6, MDM4, CASP8, 2q35, 2p24.1, TERT-rs10069690, ESR1, TOX3, 19p13.1, RALY), and we identified associations with TN breast cancer for 15 additional breast cancer loci (P < 0.05: PEX14, 2q24.1, 2q31.1, ADAM29, EBF1, TCF7L2, 11q13.1, 11q24.3, 12p13.1, PTHLH, NTN4, 12q24, BRCA2, RAD51L1-rs2588809, MKL1). Further, two SNPs independent of previously reported signals in ESR1 [rs12525163 odds ratio (OR) = 1.15, P = 4.9 × 10(-) (4)] and 19p13.1 (rs1864112 OR = 0.84, P = 1.8 × 10(-) (9)) were associated with TN breast cancer. A polygenic risk score (PRS) for TN breast cancer based on known breast cancer risk variants showed a 4-fold difference in risk between the highest and lowest PRS quintiles (OR = 4.03, 95% confidence interval 3.46-4.70, P = 4.8 × 10(-) (69)). This translates to an absolute risk for TN breast cancer ranging from 0.8% to 3.4%, suggesting that genetic variation may be used for TN breast cancer risk prediction.
- Published
- 2013
45. Ki67 and proliferation in breast cancer
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Nirmala Pathmanathan and Rosemary L. Balleine
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Oncology ,medicine.medical_specialty ,Pathology ,Evidence-based practice ,Gene Expression ,Breast Neoplasms ,Mitotic Count ,Pathology and Forensic Medicine ,Breast cancer ,Internal medicine ,Medicine ,Humans ,Oestrogen receptor ,Cell Proliferation ,biology ,business.industry ,Cancer cell proliferation ,General Medicine ,Cell cycle ,medicine.disease ,Prognosis ,Immunohistochemistry ,Ki-67 Antigen ,Receptors, Estrogen ,Ki-67 ,biology.protein ,Female ,business - Abstract
New approaches to the prognostic assessment of breast cancer have come from molecular profiling studies. A major feature of this work has been to emphasise the importance of cancer cell proliferation as a key discriminative indicator of recurrence risk for oestrogen receptor positive breast cancer in particular. Mitotic count scoring, as a component of histopathological grade, has long formed part of a routine evaluation of breast cancer biology. However, there is an increasingly compelling case to include a specific proliferation score in breast cancer pathology reports based on expression of the cell cycle regulated protein Ki67. Immunohistochemical staining for Ki67 is a widely available and economical test with good tolerance of pre-analytical variations and staining conditions. However, there is currently no evidence based protocol established to derive a reliable and informative Ki67 score for routine clinical use. In this circumstance, pathologists must establish a standardised framework for scoring Ki67 and communicating results to a multidisciplinary team.
- Published
- 2013
46. Composite phaeochromocytoma with intratumoural metastatic squamous cell carcinoma
- Author
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Nirmala Pathmanathan and Rajmohan Murali
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Oncology ,medicine.medical_specialty ,business.industry ,Internal medicine ,medicine ,Cancer research ,Basal cell ,business ,Pathology and Forensic Medicine - Published
- 2003
- Full Text
- View/download PDF
47. B cell lymphoma, unclassifiable, with features intermediate between diffuse large B cell lymphoma and classical hodgkin lymphoma: diagnosis by fine-needle aspiration cytology
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Kyaw, Lynnhtun, Winny, Varikatt, and Nirmala, Pathmanathan
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Diagnosis, Differential ,Lymphoma, B-Cell ,Cytodiagnosis ,Mediastinum ,Humans ,Female ,Lymph Nodes ,Lymphoma, Large B-Cell, Diffuse ,Middle Aged ,Endoscopic Ultrasound-Guided Fine Needle Aspiration ,Hodgkin Disease ,Immunohistochemistry - Abstract
A 58-year-old lady presented with mediastinal lymphadenopathy. A thoracoscopic ultrasound-guided fine-needle aspiration showed large atypical epithelioid cells arranged in cohesive sheets and dispersed as single cells with intact cytoplasm amid a background of lymphocytes and histiocytes. A cytological diagnosis of "a malignant neoplasm" was made, raising a broad list of differential diagnoses. A broad panel of immunocytochemical stains performed on the cell block was indicative of a lymphoproliferative disorder, but the immunophenotype was intermediate between diffuse large B cell lymphoma (DLBCL) and classical Hodgkin lymphoma (cHL). Diffuse and strong reactivity to CD20, CD79a, and PAX-5, and weak reactivity to CD30, was in favor of a DLBCL, or more precisely mediastinal (thymic) large B cell lymphoma (MLBL). However, there were negative staining for LCA, OCT-2, and BOB-1 as well as positive staining for EBV-encoded RNA, which were against a diagnosis of MLBL and raised the possibility of cHL. The absence of RS cells and the typical mileu, the negativity for CD15 and the strong positivity of CD20 and PAX-5 were against a diagnosis of cHL. On this basis, the diagnosis of "B-cell lymphoproliferative disorder with features intermediate between DLBCL and cHL" was rendered. The diagnosis was subsequently confirmed on excisional biopsy. This case report demonstrates broad differential diagnoses raised by this diagnostic entity and the importance of an adequate cell block for accurate designation.
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- 2012
48. Characteristics of HER2-positive breast cancer diagnosed following the introduction of universal HER2 testing
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Geoffrey Hall, Rosemary L. Balleine, Pamela J. Provan, Nirmala Pathmanathan, Hema Mahajan, A. Michael Bilous, and Karen Byth
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Oncology ,Adult ,medicine.medical_specialty ,Younger age ,Receptor, ErbB-2 ,Breast Neoplasms ,Breast cancer ,Age Distribution ,Internal medicine ,HER2 Positive Breast Cancer ,Biomarkers, Tumor ,Medicine ,Mammography ,Humans ,skin and connective tissue diseases ,neoplasms ,Lymph node ,Early Detection of Cancer ,Aged ,Aged, 80 and over ,Screen detected ,medicine.diagnostic_test ,business.industry ,General Medicine ,Progesterone Receptor Status ,Middle Aged ,medicine.disease ,Tumor Burden ,medicine.anatomical_structure ,Logistic Models ,Receptors, Estrogen ,Tumour size ,Lymphatic Metastasis ,Surgery ,Female ,Neoplasm Grading ,New South Wales ,business ,Receptors, Progesterone - Abstract
The aim of this study was to determine the impact of universal HER2 testing on the clinico-pathologic profile of HER2+ breast cancer. Data were extracted from breast cancer pathology reports spanning two periods: before (2003/4, n = 379), and after (2008/9, n = 560) the introduction of universal testing. In 2003/4, 43.3% of breast cancers were tested for HER2 with 16% of tested cases HER2+. In 2008/9, 98.4% of cases were tested with 14.7% HER2+. In 2008/9, HER2+ status was associated with younger age, higher grade, increased tumour size, lymph node involvement, negative oestrogen and/or progesterone receptor status. HER2+ cases diagnosed in 2003/4 were not significantly different in respect of these features. The rate of HER2+ breast cancer amongst screen detected cases in 2008/9 was 8.3%. The phenotype of HER2+ breast cancer was stable following the introduction of universal testing. The overall rate of HER2+ breast cancer was influenced by screen detection.
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- 2012
49. Intraoperative imprint cytology of sentinel lymph nodes in breast cancer: initial experience and lessons learnt in establishing a new practice
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Nirmala Pathmanathan, Wayne Jones, Elizabeth Salisbury, and M. Bilous
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medicine.medical_specialty ,Cytodiagnosis ,Mammary gland ,Sentinel lymph node ,Breast Neoplasms ,Sensitivity and Specificity ,Pathology and Forensic Medicine ,Breast cancer ,Cytology ,Biopsy ,medicine ,Humans ,False Positive Reactions ,Imprint cytology ,False Negative Reactions ,Retrospective Studies ,Intraoperative Care ,medicine.diagnostic_test ,business.industry ,Sentinel Lymph Node Biopsy ,Retrospective cohort study ,medicine.disease ,Surgery ,medicine.anatomical_structure ,Lymphatic Metastasis ,Female ,Lymph ,Radiology ,business - Abstract
The initial 18 months experience of performing intraoperative imprint cytology for patients with breast cancer undergoing sentinel lymph node biopsy is described for a single institution. The learning process is compared with published results from institutions with many years of experience in order to assess progress in reaching those ideal results, and the methodology used by these institutions is reviewed.A retrospective review was undertaken of the intraoperative imprint cytology results from 103 patients with breast cancer (yielding a total of 170 lymph nodes) who underwent imprint cytology of their sentinel lymph node. The intraoperative imprint cytology results were compared with the final histopathological results. Details regarding the primary tumour characteristics and metastatic deposit size were recorded.The sensitivity for imprint cytology was 31.1%, with a specificity of 100% and overall accuracy of 77.8%. The sensitivity for detecting macrometastases (2 mm diameter) was 61.9% and the sensitivity for micrometastases (2 mm diameter) and including isolated tumour cells was 4.2%.The differences in sensitivity in comparison with many studies in the literature are multifactorial, and include technical aspects, such as the methodology used in the final histopathological and intraoperative evaluation of the sentinel lymph nodes, interpretative difficulties, and much lower case numbers. Furthermore, these numbers represent early experience and methods to improve sensitivity and overall accuracy are detailed in this paper.
- Published
- 2006
50. Intraoperative assessment of sentinel nodes in breast cancer by One-step Nucleic Acid Amplification (OSNA) versus imprint cytology
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Elisabeth Elder, Michael Bilous, Nirmala Pathmanathan, Hema Mahajan, and James French
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Oncology ,medicine.medical_specialty ,Pathology ,Breast cancer ,business.industry ,Internal medicine ,medicine ,Nucleic acid ,Surgery ,General Medicine ,Imprint cytology ,medicine.disease ,business - Published
- 2012
- Full Text
- View/download PDF
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