1,540 results on '"Ning Yuan"'
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2. Targeting a disintegrin and metalloprotease (ADAM) 17-CD122 axis enhances CD8+ T cell effector differentiation and anti-tumor immunity
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Lina Sun, Anjun Jiao, Haiyan Liu, Renyi Ding, Ning Yuan, Biao Yang, Cangang Zhang, Xiaoxuan Jia, Gang Wang, Yanhong Su, Dan Zhang, Lin Shi, Chenming Sun, Aijun Zhang, Lianjun Zhang, and Baojun Zhang
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Medicine ,Biology (General) ,QH301-705.5 - Abstract
Abstract CD8+ T cell immune responses are regulated by multi-layer networks, while the post-translational regulation remains largely unknown. Transmembrane ectodomain shedding is an important post-translational process orchestrating receptor expression and signal transduction through proteolytic cleavage of membrane proteins. Here, by targeting the sheddase A Disintegrin and Metalloprotease (ADAM)17, we defined a post-translational regulatory mechanism mediated by the ectodomain shedding in CD8+ T cells. Transcriptomic and proteomic analysis revealed the involvement of post-translational regulation in CD8+ T cells. T cell-specific deletion of ADAM17 led to a dramatic increase in effector CD8+ T cell differentiation and enhanced cytolytic effects to eliminate pathogens and tumors. Mechanistically, ADAM17 regulated CD8+ T cells through cleavage of membrane CD122. ADAM17 inhibition led to elevated CD122 expression and enhanced response to IL-2 and IL-15 stimulation in both mouse and human CD8+ T cells. Intriguingly, inhibition of ADAM17 in CD8+ T cells improved the efficacy of chimeric antigen receptor (CAR) T cells in solid tumors. Our findings reveal a critical post-translational regulation in CD8+ T cells, providing a potential therapeutic strategy of targeting ADAM17 for effective anti-tumor immunity.
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- 2024
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3. Machine learning unveils an immune-related DNA methylation profile in germline DNA from breast cancer patients
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Ning Yuan Lee, Melissa Hum, Guek Peng Tan, Ai Choo Seah, Pei-Yi Ong, Patricia T. Kin, Chia Wei Lim, Jens Samol, Ngiap Chuan Tan, Hai-Yang Law, Min-Han Tan, Soo-Chin Lee, Peter Ang, and Ann S. G. Lee
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Breast cancer ,DNA methylation ,Peripheral blood ,Early detection ,Liquid biopsy ,Biomarker ,Medicine ,Genetics ,QH426-470 - Abstract
Abstract Background There is an unmet need for precise biomarkers for early non-invasive breast cancer detection. Here, we aimed to identify blood-based DNA methylation biomarkers that are associated with breast cancer. Methods DNA methylation profiling was performed for 524 Asian Chinese individuals, comprising 256 breast cancer patients and 268 age-matched healthy controls, using the Infinium MethylationEPIC array. Feature selection was applied to 649,688 CpG sites in the training set. Predictive models were built by training three machine learning models, with performance evaluated on an independent test set. Enrichment analysis to identify transcription factors binding to regions associated with the selected CpG sites and pathway analysis for genes located nearby were conducted. Results A methylation profile comprising 51 CpGs was identified that effectively distinguishes breast cancer patients from healthy controls achieving an AUC of 0.823 on an independent test set. Notably, it outperformed all four previously reported breast cancer-associated methylation profiles. Enrichment analysis revealed enrichment of genomic loci associated with the binding of immune modulating AP-1 transcription factors, while pathway analysis of nearby genes showed an overrepresentation of immune-related pathways. Conclusion This study has identified a breast cancer-associated methylation profile that is immune-related to potential for early cancer detection.
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- 2024
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4. HCA-DAN: hierarchical class-aware domain adaptive network for gastric tumor segmentation in 3D CT images
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Ning Yuan, Yongtao Zhang, Kuan Lv, Yiyao Liu, Aocai Yang, Pianpian Hu, Hongwei Yu, Xiaowei Han, Xing Guo, Junfeng Li, Tianfu Wang, Baiying Lei, and Guolin Ma
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Gastric tumor segmentation ,Anisotropic network ,Domain adaptation ,Hierarchical class-aware domain alignment ,CT images ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Accurate segmentation of gastric tumors from CT scans provides useful image information for guiding the diagnosis and treatment of gastric cancer. However, automated gastric tumor segmentation from 3D CT images faces several challenges. The large variation of anisotropic spatial resolution limits the ability of 3D convolutional neural networks (CNNs) to learn features from different views. The background texture of gastric tumor is complex, and its size, shape and intensity distribution are highly variable, which makes it more difficult for deep learning methods to capture the boundary. In particular, while multi-center datasets increase sample size and representation ability, they suffer from inter-center heterogeneity. Methods In this study, we propose a new cross-center 3D tumor segmentation method named Hierarchical Class-Aware Domain Adaptive Network (HCA-DAN), which includes a new 3D neural network that efficiently bridges an Anisotropic neural network and a Transformer (AsTr) for extracting multi-scale context features from the CT images with anisotropic resolution, and a hierarchical class-aware domain alignment (HCADA) module for adaptively aligning multi-scale context features across two domains by integrating a class attention map with class-specific information. We evaluate the proposed method on an in-house CT image dataset collected from four medical centers and validate its segmentation performance in both in-center and cross-center test scenarios. Results Our baseline segmentation network (i.e., AsTr) achieves best results compared to other 3D segmentation models, with a mean dice similarity coefficient (DSC) of 59.26%, 55.97%, 48.83% and 67.28% in four in-center test tasks, and with a DSC of 56.42%, 55.94%, 46.54% and 60.62% in four cross-center test tasks. In addition, the proposed cross-center segmentation network (i.e., HCA-DAN) obtains excellent results compared to other unsupervised domain adaptation methods, with a DSC of 58.36%, 56.72%, 49.25%, and 62.20% in four cross-center test tasks. Conclusions Comprehensive experimental results demonstrate that the proposed method outperforms compared methods on this multi-center database and is promising for routine clinical workflows.
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- 2024
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5. Multiple serum anti-glutamate receptor antibody levels in clozapine-treated/naïve patients with treatment-resistant schizophrenia
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Jingqi He, Jinguang Li, Yisen Wei, Zhangyin He, Junyu Liu, Ning Yuan, Risheng Zhou, Xingtao He, Honghong Ren, Lin Gu, Yanhui Liao, Xiaogang Chen, and Jinsong Tang
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Treatment-resistant schizophrenia ,Clozapine ,Anti-glutamate receptor antibody ,NMDA ,AMPA ,mGluR ,Psychiatry ,RC435-571 - Abstract
Abstract Background Glutamatergic function abnormalities have been implicated in the etiology of treatment-resistant schizophrenia (TRS), and the efficacy of clozapine may be attributed to its impact on the glutamate system. Recently, evidence has emerged suggesting the involvement of immune processes and increased prevalence of antineuronal antibodies in TRS. This current study aimed to investigate the levels of multiple anti-glutamate receptor antibodies in TRS and explore the effects of clozapine on these antibody levels. Methods Enzyme linked immunosorbent assay (ELISA) was used to measure and compare the levels of anti-glutamate receptor antibodies (NMDAR, AMPAR, mGlur3, mGluR5) in clozapine-treated TRS patients (TRS-C, n = 37), clozapine-naïve TRS patients (TRS-NC, n = 39), and non-TRS patients (nTRS, n = 35). Clinical symptom severity was assessed using the Positive and Negative Symptom Scale (PANSS), while cognitive function was evaluated using the MATRICS Consensus Cognitive Battery (MCCB). Result The levels of all four glutamate receptor antibodies in TRS-NC were significantly higher than those in nTRS (p
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- 2024
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6. Ten Questions on Adjustable Water Volume of the Western Route of South-to-North Water Diversion Project
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Hu Peng, Wang Hao, Zhao Yong, Ning Yuan, Jiang Yunzhong, Liu Huan, Zeng Qinghui, Yang Zefan, Zhou Yuyan, Dong Ningpeng, Yan Long, A Yinglan, Zhang Fengbo, Tang Jiaxuan, Wang Yulian, and Wang Jianhua
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Western Route of South-to-North Water Diversion Project ,water source areas ,adjustable water volume ,ecological water demand ,inter-basin water transfer ,Engineering (General). Civil engineering (General) ,TA1-2040 - Abstract
The Western Route of the South-to-North Water Diversion Project is the final link to be constructed for the four-horizontal three-vertical framework of China’s national water network. The adjustable water volume in the water source areas is a focal and challenging issue in the planning and demonstration of the Western Route. This study raised ten questions related to the adjustable water volume in the water source areas of the Western Route from the aspects of water resource background conditions and evolution trends, ecological and socio-economic water demands, scales of reservoirs and water conveyance projects, as well as impacts of water diversion on water resource development and utilization, aquatic ecological environment, hydropower, and navigation in the water source areas and their lower reaches. Based on a distributed hydrological model of the upper reaches of the Yangtze River, a simulation and analysis model for calculating the adjustable water volume in water source areas of the Western Route is established to quantitatively answer the ten questions raised. The main conclusions are as follows. First, under the premise of solely satisfying ecological and socio-economic water demands within and outside the river channels of the water source areas, a plan that combines upper and lower routes presents an average adjustable water volume of 1.59×1010 m³ over multiple years, while a plan for solely constructing a lower route can reach an average adjustable water volume of 1.74×1010 m³ by constructing the Gangtuo Reservoir for coordinated operation. Second, comprehensively considering the impacts of water diversion on water balance, hydropower, and navigation, as well as their acceptability in the water source areas, the adjustable water volume is between 1.22×1010 and 1.26×1010 m³. Third, in the long term, the plan should focus on connecting and integrating the water network in the southwestern region with the main framework and major streams of the national water network of China. This will reduce the impacts of water diversion by the Western Route Project, increase the overall water supply capacity of the project, and promote its adaptability to external conditions such as climate change.
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- 2024
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7. Foundation and technology of coordinated utilization of bulk solid waste ‘Three modernizations’ in coal power base
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Ke YANG, Shuxin HE, Xiang HE, Mo CHU, Wei ZHOU, Ning YUAN, Denghong CHEN, Peng GONG, and Yuanchun ZHANG
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coal power base ,coal-based solid waste ,collaborative utilization ,deep mining ,source reduction ,mining, dressing and backfilling integrated ,Mining engineering. Metallurgy ,TN1-997 - Abstract
The construction of 14 large-scale coal bases and 89 demonstration bases for the comprehensive utilization of bulk solid waste in China marks that the utilization of bulk solid waste in mining areas has been incorporated into the national strategic development layout. The long-term high-intensity development and utilization of coal resources has caused the near depletion of shallow-buried coal seam resources in mining areas, and the large-scale solid waste accumulation and surface subsidence of coal power and chemical bases has become a problem restricting the green, low-carbon and high-quality development of mining areas. Co-operative utilization of bulk coal-based solid waste and green filling is an effective way to liberate the “three down and one up” pressed coal, extend the service life of mines, and realize the harmless, resourceful, and large-scale “three” utilization of solid waste. Based on the types and production of coal-based solid waste in Shanxi Province, the “East China Energy Granary” Anhui Lianghuai Base and Ningdong Energy and Chemical Base, it elaborates in detail the harmless disposal of coal-based solid waste through heavy metal adsorption and desorption and complexation passivation technology with coal gangue, fly ash, furnace slag, gasification slag and desulphurization gypsum as the main materials, listing the classification and application of coal-based solid waste, and the application of coal gangue, fly ash, furnace slag, gasification slag and desulphurization gypsum as the main materials. List the ways of resource utilization of coal-based solid waste classified and applied to low calorific value coal-based solid waste for power generation, preparation of building materials such as cement, bricks and tiles, etc. Comparatively analyze the ways of reclamation and backfilling of coal mining subsidence area and downhole filling and large-scale utilization of coal-based solid waste, highlighting the superiority of downhole filling of coal-based solid waste. Based on the deep coal resources of coal electrification bases, the theory and key technologies of green filling mining are proposed, including the synergistic technology of deep coal gangue source reduction and mining and filling, the technology of efficient preparation and deep underground transportation of filling materials, and the deep multi-field coupling mechanism of coal-based solid waste filling materials, and the technological principles and methods of the whole process of deep filling mining of multi-source coal-based solid waste from the source, process to the end are investigated to solve the technical problems of deep underground filling of mining areas. The technical problems of filling are solved. According to the geological conditions and filling purposes of Renjiazhuang Coal Mine in Ningdong Base, Huoerxinhe Coal Mine in Shanxi Province and Huaibei Mining Area, the key technologies of low-level filling by overdrilling, multi-separation layer stepped grouting under the conditions of atypical characteristics of key layers and synergistic utilization of coal-based solid wastes have been proposed, which comprehensively combine the advantages of disposal and utilization of solid wastes from mines, development and utilization of deep coal resources, control of subsidence of the ground surface, and ecological environment protection, and form a comprehensive plan for the disposal and utilization of bulk solid wastes from coal power and chemical bases. Coal power and chemical base bulk solid waste synergistic utilization and green mining mode, providing reference for high quality coal mining and low damage to the environment.
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- 2024
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8. Exploring the Influence of Biochar-Supported Nano-Iron Oxide on Phosphorus Speciation Transformation and Bacterial Community Structure in Aerobic Pig Manure Composting Processes
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Ning Yuan, Kang Wang, Mengyue Liang, Jia Zhou, and Rui Yu
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BC-Fe3O4NPs ,aerobic composting ,phosphorus speciation ,metagenomics ,Biology (General) ,QH301-705.5 - Abstract
Existing studies have demonstrated the positive effects of nano-sized iron oxide on compost maturity, yet the impact of nano-sized iron oxide on phosphorus speciation and bacterial communities during the composting process remains unclear. In this study, pig manure and straw were used as raw materials, with biochar-supported nano-sized iron oxide (BC-Fe3O4NPs) as an additive and calcium peroxide (CaO2) as a co-agent, to conduct an aerobic composting experiment with pig manure. Four treatments were tested: CK (control), F1 (1% BC-Fe3O4NPs), F2 (5% BC-Fe3O4NPs), and F3 (5% BC-Fe3O4NPs + 5% CaO2). Key findings include the following. (1) BC-Fe3O4NPs increased compost temperatures, with F3 reaching 61℃; F1 showed optimal maturity (C/N ratio: 12.90). (2) BC-Fe3O4NPs promoted stable phosphorus forms; Residual-P proportions were higher in F1, F2, and F3 (25.81%, 51.16%, 51.68%) than CK (19.32%). (3) Bacterial phyla Firmicutes, Actinobacteria, and Proteobacteria dominated. BC-Fe3O4NPs altered community composition, especially on day 7. Firmicutes dominated CK, F1, and F3; Proteobacteria dominated F2. At the genus level, day 7 showed Corynebacterium (CK), Clostridum (F1, F3), and Caldibacillus (F2) as predominant. (4) Pearson correlation analysis revealed shifted correlations between phosphorus forms and bacterial phyla after BC-Fe3O4NPs addition. Firmicutes positively correlated with NaOH-OP in F1 during the thermophilic phase, facilitating phosphate release and adsorption by BC-Fe3O4NPs. The significance of correlations diminished with increasing additive concentration; in F3, all phyla positively correlated with various phosphorus forms.
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- 2024
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9. Prevalence and clinical correlates of suicide attempts in patients with first-episode drug-naïve major depressive disorder and comorbid autoimmune thyroiditis
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Yinli Luo, Yanan Zhou, Pu Peng, Ning Yuan, and Xiangyang Zhang
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Anxiety ,autoimmune thyroiditis ,major depressive disorder ,suicide attempts ,first-episode drug-naïve ,Psychiatry ,RC435-571 - Abstract
Background Autoimmune thyroiditis is closely associated with major depressive disorder (MDD) and suicide attempts. However, few studies have examined this relationship. Aims The study aimed to assess the prevalence and correlates of suicide attempts in patients with first-episode drug-naïve (FEDN) MDD and autoimmune thyroiditis. Method We recruited 1718 out-patients with FEDN MDD and assessed depressive, anxiety and psychotic symptoms with the Hamilton Rating Scale for Depression, Hamilton Rating Scale for Anxiety (HRSA) and Positive and Negative Syndrome Subscale positive subscale, respectively. The serum levels of free triiodothyronine, free thyroxine, thyroid stimulating hormone (TSH), antithyroglobulin, thyroid peroxidase antibody (TPOAb) and several other metabolic parameters were assessed. Patients were divided into non-autoimmune thyroiditis, autoimmune thyroiditis only and autoimmune thyroiditis with abnormal TSH groups, based on autoimmune thyroiditis severity. Multiple logistic regression model was applied to identify the correlates of suicide attempts in patients with MDD and autoimmune thyroiditis with abnormal TSH. Results Compared with the non-autoimmune thyroiditis group, the autoimmune thyroiditis with abnormal TSH group had a nearly fourfold higher likelihood of reporting a suicide attempt, whereas no difference was found between the non-autoimmune thyroiditis and autoimmune thyroiditis only groups. HRSA score, lnTPOAb and lnTSH were independently associated with suicide attempts in patients with autoimmune thyroiditis with abnormal TSH. Conclusions Patients with MDD and autoimmune thyroiditis with abnormal TSH are at higher risk for suicide attempt. TPOAb, TSH and anxiety are all independently associated with suicide attempts in this population, and regular thyroid checks are warranted.
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- 2024
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10. Irrigation Regime Optimization Plays a Critically Important Role in Plastic-Shed Vegetable Production to Mitigate Short-Term and Future N Leaching Pollution
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Xiuchun Xu, Bin Cui, Xuan Yang, Ning Yuan, Ligang Wang, Bang Ni, and Fanqiao Meng
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water percolation ,organic fertilizer ,autumn–winter season ,basal fertilizer ,northern China ,Plant culture ,SB1-1110 - Abstract
In northern China, plastic-shed vegetable production significantly contributes to nitrogen (N)-induced groundwater eutrophication due to excessive fertilization and irrigation. However, the impact of optimized farming practices on N leaching has seldom been systematically examined. We conducted a four-season field study to evaluate the impacts of optimal farming measures on tomato yield, water percolation, N concentration in leachate, and total N (TN) leaching. The treatments included conventional fertilization and flood irrigation (CON), fertilization decreased by 20% and flood irrigation (OPT1) or drip fertigation (OPT2), fertilization decreased by 30% and drip fertigation (OPT3), and no fertilization with flood irrigation (CK). Compared with the CON treatment, the optimal treatments significantly reduced annual TN leaching by 9.92–50.7% without affecting tomato yield (57.1–98.2 t ha−1 for CON and 48.1–106 t ha−1 for three optimal treatments). Drip irrigation contributed 73.8–79.0% to the mitigation of TN leaching. The N originating from soil and irrigation water exhibited a similar contribution to TN leaching (45.4–58.6%) to that of fertilizer N. The daily TN leaching at the basal fertilization stage was much greater than that at the top-dressing stage, due to over-fertilization. Optimizing fertilization, particularly basal fertilization, in combination with drip irrigation could substantially reduce N leaching in plastic-shed vegetable production. Other optimal practices, such as decision support systems (DSSs) and fertilizer amendments, could also be investigated to further mitigate the N leaching.
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- 2024
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11. Experimental Study on the Spring-like Effect on the Hydrodynamic Performance of an Oscillating Water Column Wave Energy Converter
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Ning Yuan, Chuanli Xu, and Zhen Liu
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wave energy ,oscillating water column ,spring-like effect ,air compressibility ,hydrodynamic performance ,Naval architecture. Shipbuilding. Marine engineering ,VM1-989 ,Oceanography ,GC1-1581 - Abstract
The oscillating water column (OWC) wave energy converter has demonstrated significant potential for converting ocean wave energy. The spring-like effect of air compressibility can significantly affect the hydrodynamic behavior of the device, but it has rarely been investigated through experimental studies. In this study, an experimental test on a model-scaled OWC device was carried out in a wave flume using a series of regular and irregular waves. The spring-like effect was taken into account by the combination of the air chamber with an additional air reservoir of appropriate volume, where the total volume was scaled according to the square of the Froude scale. The hydrodynamic performance was compared with the results obtained without considering the spring-like effect. A phase difference between the air pressure and airflow rate was observed when employing the additional air reservoir. The amplitudes of free surface elevation and airflow rate increased, while the air pressure was reduced when the spring-like effect was considered. The results demonstrate that failure to consider the spring-like effect can lead to overestimation of the hydrodynamic efficiencies, and the errors were mainly affected by the incident wave frequency.
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- 2024
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12. Comparative Analysis of Bacterial Community Structures in Earthworm Skin, Gut, and Habitat Soil across Typical Temperate Forests
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Kang Wang, Ning Yuan, Jia Zhou, and Hongwei Ni
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earthworm ,bacteria ,diversity analysis ,mantel test ,environmental factors ,Biology (General) ,QH301-705.5 - Abstract
Earthworms are essential components in temperate forest ecosystems, yet the patterns of change in earthworm-associated microbial communities across different temperate forests remain unclear. This study employed high-throughput sequencing technology to compare bacterial community composition and structure in three earthworm-associated microhabitats (skin, gut, and habitat soil) across three typical temperate forests in China, and investigated the influence of environmental factors on these differential patterns. The results indicate that: (1) From warm temperate forests to cold temperate forests, the soil pH of the habitat decreased significantly. In contrast, the physicochemical properties of earthworm skin mucus exhibited different trends compared to those of the habitat soil. (2) Alpha diversity analysis revealed a declining trend in Shannon indices across all three microhabitats. (3) Beta diversity analysis revealed that the transition from warm temperate deciduous broad-leaved forest to cold temperate coniferous forest exerted the most significant impact on the gut bacterial communities of earthworms, while its influence on the skin bacterial communities was comparatively less pronounced. (4) Actinobacteria and Proteobacteria were the predominant phyla in earthworm skin, gut, and habitat soil, but the trends in bacterial community composition differed among the three microhabitats. (5) Mantel tests revealed significant correlations between bacterial community structures and climatic factors, physicochemical properties of earthworm habitat soil, and physicochemical properties of earthworm skin mucus. The findings of this study offer novel perspectives on the interplay between earthworms, microorganisms, and the environment within forest ecosystems.
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- 2024
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13. Metagenomic insights into the alteration of soil N‐cycling‐related microbiome and functions under long‐term conversion of cropland to Miscanthus
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Chunqiao Zhao, Yuesen Yue, Qiang Guo, Juying Wu, Jinku Song, Qinghai Wang, Cui Li, Yang Hu, Sisi Wang, Ning Yuan, Zhengang Wang, Ranran Fan, Xincun Hou, and Xifeng Fan
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cropland ,metagenomic analysis ,N‐cycling ,N fixation ,perennial energy crops ,soil properties ,Renewable energy sources ,TJ807-830 ,Energy industries. Energy policy. Fuel trade ,HD9502-9502.5 - Abstract
Abstract Miscanthus spp. show excellent application prospects due to its bioenergy potential and multiple ecological services. Annual N export with biomass harvest from Miscanthus, even without fertilizer supplement, do not reduce soil N levels. The question arises regarding how Miscanthus can maintain stable soil N levels. Metagenomic strategies were used to reveal soil N‐cycling‐related microbiome and their functional contributions to processes of soil N‐cycling based on the comparison among the bare land, cropland, 10‐year Miscanthus × giganteus, and 15‐year Miscanthus sacchariflorus fields. The results showed that, after long‐term cropland‐to‐Miscanthus conversion (LCMC), 16 of 21 bacterial phyla and all the archaeal phyla exhibited significant changes. Soil microbial denitrification and nitrification functions were significantly weakened, and N fixation (NF) was significantly enhanced. The biosynthesis of amino acids, especially alanine, aspartate, and glutamate metabolism, in soil N‐cycling‐related microbiome was dramatically promoted. The genus Anaeromyxobacter contributed largely to the NF process after LCMC. Variations in the soil available potassium, available N, organic C, and total N contents drove a functional shift of soil microbiome from cropland to Miscanthus pattern. We conclude that Miscanthus can recruit Anaeromyxobacter communities to enhance NF benefiting its biomass sustainability and soil N balance.
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- 2023
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14. Degradation of methylation signals in cryopreserved DNA
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Ning Yuan Lee, Melissa Hum, Guek Peng Tan, Ai Choo Seah, Patricia T. Kin, Ngiap Chuan Tan, Hai-Yang Law, and Ann S. G. Lee
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Methylation ,Blood ,Cryopreservation ,Storage ,Buffy coat ,DNA ,Medicine ,Genetics ,QH426-470 - Abstract
Abstract Background Blood-based DNA methylation has shown great promise as a biomarker in a wide variety of diseases. Studies of DNA methylation in blood often utilize samples which have been cryopreserved for years or even decades. Therefore, changes in DNA methylation associated with long-term cryopreservation can introduce biases or otherwise mislead methylation analyses of cryopreserved DNA. However, previous studies have presented conflicting results with studies reporting hypomethylation, no effect, or even hypermethylation of DNA following long-term cryopreservation. These studies may have been limited by insufficient sample sizes, or by their profiling of methylation only on an aggregate global scale, or profiling of only a few CpGs. Results We analyzed two large prospective cohorts: a discovery (n = 126) and a validation (n = 136) cohort, where DNA was cryopreserved for up to four years. In both cohorts there was no detectable change in mean global methylation across increasing storage durations as DNA. However, when analysis was performed on the level of individual CpG methylation both cohorts exhibited a greater number of hypomethylated than hypermethylated CpGs at q-value
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- 2023
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15. Estimating carbon sequestration potential and optimizing management strategies for Moso bamboo (Phyllostachys pubescens) forests using machine learning
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Shaofeng Lv, Ning Yuan, Xiaobo Sun, Xin Chen, Yongjun Shi, Guomo Zhou, and Lin Xu
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Phyllostachys pubescens ,machine learning ,climate change ,management optimization ,carbon sequestration capacity ,Forestry ,SD1-669.5 ,Environmental sciences ,GE1-350 - Abstract
Estimating the carbon sequestration potential of Moso bamboo (Phyllostachys pubescens) forests and optimizing management strategies play pivotal roles in enhancing quality and promoting sustainable development. However, there is a lack of methods to simulate changes in carbon sequestration capacity in Moso bamboo forests and to screen and optimize the best management measures based on long-term time series data from fixed-sample fine surveys. Therefore, this study utilized continuous survey data and climate data from fixed sample plots in Zhejiang Province spanning from 2004 to 2019. By comparing four different algorithms, namely random forest, support vector machine, XGBoost, and BP neural network, to construct aboveground carbon stock models for Moso bamboo forests. The ultimate goal was to identify the optimal algorithmic model. Additionally, the key driving parameters for future carbon stocks were considered and future aboveground carbon stocks were predicted in Moso bamboo forests. Then formulated an optimal management strategy based on these predictions. The results indicated that the carbon stock model constructed using the XGBoost algorithm, with an R2 of 0.9895 and root mean square error of 0.1059, achieved the best performance and was considered the optimal algorithmic model. The most influential driving parameters for vegetation carbon stocks in Moso bamboo forests were found to be mean age, mean diameter at breast height, and mean culm density. Under optimal management measures, which involve no harvesting of 1–3 du bamboo, 30% harvesting of 4 du bamboo, and 80% harvesting of bamboo aged 5 du and above. Our predictions show that aboveground carbon stocks in Moso bamboo forests in Zhejiang Province will peak at 36.25 ± 8.47 Tg C in 2046 and remain stable from 2046 to 2060. Conversely, degradation is detrimental to the long-term maintenance of carbon sequestration capacity in Moso bamboo forests, resulting in a peak aboveground carbon stock of 29.50 ± 7.49 Tg C in 2033, followed by a continuous decline. This study underscores the significant influence of estimating carbon sequestration potential and optimizing management decisions on enhancing and sustaining the carbon sequestration capacity of Moso bamboo forests.
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- 2024
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16. Sex differences in the association of treatment-resistant schizophrenia and serum interleukin-6 levels
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Jingqi He, Yisen Wei, Jinguang Li, Ying Tang, Junyu Liu, Zhangyin He, Risheng Zhou, Xingtao He, Honghong Ren, Yanhui Liao, Lin Gu, Ning Yuan, Xiaogang Chen, and Jinsong Tang
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Treatment-resistant schizophrenia ,Interleukin-6 ,Cytokines ,Inflammation ,Sex ,Psychiatry ,RC435-571 - Abstract
Abstract Background Low-grade inflammation and altered inflammatory markers have been observed in treatment-resistant schizophrenia (TRS). Interleukin-6 (IL-6) is one of the pro-inflammatory cytokines linked with TRS and receives increasing attention. Previous studies showed that patients with TRS might have higher IL-6 levels compared with healthy individuals and treatment-responsive patients. Besides, emerging evidence has suggested that there are sex differences in the associations between IL-6 levels and various illnesses, including chronic hepatitis C, metabolic syndrome, etc.; however, there is limited study on TRS. In this present study, we aimed to compare the serum IL-6 levels of TRS and partially responsive schizophrenia (PRS) and explore potential sex differences in the association of TRS and IL-6 levels. Methods The study population consisted of a total of 90 patients with schizophrenia: 64 TRS patients (45.3% males and 54.7% females) and 26 PRS patients (46.2% males and 53.8% females). We measured serum IL-6 levels using enzyme-linked immunosorbent assay (ELISA) and analyzed them separately by gender, controlling for confounders (age, education, medication, body mass index, and PANSS scores) rigorously. Result The results showed that patients with TRS had higher serum IL-6 levels than patients with PRS (p = 0.002). In females, IL-6 levels increased significantly in the TRS group compared with the PRS group (p = 0.005). And a positive correlation tendency was observed between IL-6 levels and PANSS general sub-scores (r = 0.31, p = 0.039), although this correlation was not significant after correcting for multiple comparisons. Whereas, there were no differences in IL-6 levels between the TRS and PRS (p = 0.124) in males. Conclusion Our findings provided evidence supporting the hypothesis that the inflammatory response system (IRS) may play a role in the pathogenesis of TRS in a sex-dependent manner. In addition, sex differences in the immune dysfunction of individuals with schizophrenia cannot be neglected, and inflammation in male and female TRS should be discussed separately.
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- 2023
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17. KF-Containing Interphase Formation Enables Better Potassium Ion Storage Capability
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Tianyi Zhang, Ning Yuan, Zijie Li, Kun Chao, Zhonghua Zhang, and Guicun Li
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potassium ion batteries ,bismuth anodes ,electrolytes ,nanostructures ,nanocomposites ,Organic chemistry ,QD241-441 - Abstract
Rechargeable potassium ion batteries have long been regarded as one alternative to conventional lithium ion batteries because of their resource sustainability and cost advantages. However, the compatibility between anodes and electrolytes remains to be resolved, impeding their commercial adoption. In this work, the K-ion storage properties of Bi nanoparticles encapsulated in N-doped carbon nanocomposites have been examined in two typical electrolyte solutions, which show a significant effect on potassium insertion/removal processes. In a KFSI-based electrolyte, the N-C@Bi nanocomposites exhibit a high specific capacity of 255.2 mAh g−1 at 0.5 A g−1, which remains at 245.6 mAh g−1 after 50 cycles, corresponding to a high capacity retention rate of 96.24%. In a KPF6-based electrolyte, the N-C@Bi nanocomposites show a specific capacity of 209.0 mAh g−1, which remains at 71.5 mAh g−1 after 50 cycles, corresponding to an inferior capacity retention rate of only 34.21%. Post-investigations reveal the formation of a KF interphase derived from salt decomposition and an intact rod-like morphology after cycling in K2 electrolytes, which are responsible for better K-ion storage properties.
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- 2024
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18. Relationship between bisphenol A and autoimmune thyroid disease in women of childbearing age
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Ning Yuan, Jianbin Sun, Xin Zhao, and Wei Li
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autoimmune thyroid disease ,thyroglobulin antibody ,bisphenol A ,anti-thyroid peroxidase antibody ,euthyroidism ,Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
BackgroundAutoimmune thyroid disease (AITD) is the main cause of hypothyroidism in women of childbearing age. Bisphenol A (BPA) is an environmental factor affecting AITD. This study aims to investigate relationship between BPA and AITD in women of childbearing age, thereby contributing novel evidence for the prevention of hypothyroidism in this specific demographic.MethodsA total of 155 women of childbearing age were enrolled in this study, including the euthyroid group comprised 60 women with euthyroidism and thyroid autoantibodies negativity and the AITD group consisted of 95 women with euthyroidism and at least one thyroid autoantibody positivity. The general information, thyroid function, thyroid autoantibodies, and thyroid ultrasound results of the two groups of women of childbearing age were recorded. Urinary BPA and urinary BPA/creatinine were detected. The difference of BPA levels between the two groups was compared. logistic regression was used to analyze the correlation between BPA and AITD.ResultsThe proportion of multiparous and serum thyroid stimulating hormone levels were significantly higher in the AITD group compared to the euthyroid group. Logistic regression analysis revealed that BPA levels did not exhibit a statistically significant association with AITD. Spearman correlation analysis revealed a statistically significant correlation between BPA and urinary iodine levels (r=0.30, P < 0.05), as well as a correlation between urinary BPA and free tetraiodothyronine (FT4) levels (r=0.29, P < 0.05).ConclusionThis study revealed a correlation between urinary BPA levels and FT4 levels. However, it did not establish a relationship between BPA and AITD in women of childbearing age.
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- 2024
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19. Canopeo app as image-based phenotyping tool in controlled environment utilizing Arabidopsis mutants
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Gabriella Hale, Ning Yuan, Lavanya Mendu, Glen Ritchie, and Venugopal Mendu
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Medicine ,Science - Published
- 2024
20. Maternal isolated hypothyroxinemia in the first trimester is not associated with adverse pregnancy outcomes, except for macrosomia: a prospective cohort study in China
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Jing Du, Linong Ji, Xiaomei Zhang, Ning Yuan, Jianbin Sun, and Dan Zhao
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isolated hypothyroxinemia ,pregnancy outcome ,macrosomia ,first trimester ,prospective cohort study ,Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
ObjectiveInsufficient thyroid hormone levels during pregnancy, especially in the first trimester, adversely affect maternal and fetal health. However, the impact of isolated hypothyroxinemia (IH) on adverse pregnancy outcomes remains controversial. Therefore, this study aimed to investigate the association between IH during the first trimester and adverse pregnancy outcomes.MethodsThis prospective cohort study included 1236 pregnant women. Thyroid-stimulating hormone and free thyroxine levels were measured before 13 weeks of gestation. Logistic regression analysis and the Cochran-Armitage trend test were used to assess the association between IH in the first trimester and adverse pregnancy outcomes.ResultsIH during the first trimester was associated with an increased risk of macrosomia. After adjusting for confounding factors, including age, body mass index, parity, abnormal pregnancy history, fasting blood glucose, and total cholesterol, multivariate logistic regression analysis showed that IH in the first trimester remained an independent risk factor for macrosomia. In addition, the risk of macrosomia increased with IH severity. However, no significant relationship was found between IH during the first trimester and gestational diabetes mellitus, hypertensive disorders of pregnancy, spontaneous abortion, premature rupture of membranes, placental abruption, oligohydramnios, premature delivery, fetal distress, or low birth weight.ConclusionIH during the first trimester did not increase the risk of adverse pregnancy outcomes, except for macrosomia.
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- 2023
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21. Free triiodothyronine (FT3)-to-free thyroxine (FT4) ratio identified as a risk factor for gestational diabetes in euthyroid pregnant women: insights from a Chinese population cohort study
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Xin Zhao, Jianbin Sun, Ning Yuan, and Xiaomei Zhang
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thyroid hormone ,gestational diabetes mellitus ,oral glucose tolerance test ,glycosylated hemoglobin ,pregnancy ,Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
BackgroundTo explore the association between thyroid hormones and gestational diabetes mellitus in euthyroid pregnant women, with the aim of preventing the occurrence of gestational diabetes mellitus.MethodsIn this prospective study, a total of 1222 euthyroid pregnant women in their first trimester were recruited at Peking University International Hospital between December 2017 and March 2019. These participants underwent an oral glucose tolerance test during the 24-28 weeks of gestation.ResultsDuring early pregnancy, the gestational diabetes mellitus group displayed lower levels of free thyroxine when compared to the non-gestational diabetes mellitus group. Additionally, the ratio of free triiodothyronine to free thyroxine in the gestational diabetes mellitus group during early pregnancy was significantly higher (p
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- 2023
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22. Whole-exome sequencing of BRCA-negative breast cancer patients and case–control analyses identify variants associated with breast cancer susceptibility
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Ning Yuan Lee, Melissa Hum, Aseervatham Anusha Amali, Wei Kiat Lim, Matthew Wong, Matthew Khine Myint, Ru Jin Tay, Pei-Yi Ong, Jens Samol, Chia Wei Lim, Peter Ang, Min-Han Tan, Soo-Chin Lee, and Ann S. G. Lee
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Breast cancer ,BRCA1/2 negative ,Whole-exome sequencing ,Germline variants ,Case–control analysis ,Medicine ,Genetics ,QH426-470 - Abstract
Abstract Background For the majority of individuals with early-onset or familial breast cancer referred for genetic testing, the genetic basis of their familial breast cancer remains unexplained. To identify novel germline variants associated with breast cancer predisposition, whole-exome sequencing (WES) was performed. Methods WES on 290 BRCA1/BRCA2-negative Singaporeans with early-onset breast cancer and/or a family history of breast cancer was done. Case–control analysis against the East-Asian subpopulation (EAS) from the Genome Aggregation Database (gnomAD) identified variants enriched in cases, which were further selected by occurrence in cancer gene databases. Variants were further evaluated in repeated case–control analyses using a second case cohort from the database of Genotypes and Phenotypes (dbGaP) comprising 466 early-onset breast cancer patients from the United States, and a Singapore SG10K_Health control cohort. Results Forty-nine breast cancer-associated germline pathogenic variants in 37 genes were identified in Singapore cases versus gnomAD (EAS). Compared against SG10K_Health controls, 13 of 49 variants remain significantly enriched (False Discovery Rate (FDR)-adjusted p
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- 2022
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23. Optimization of ultrasonic-assisted extraction of flavonoids from Lactuca indica L. cv. Mengzao and their antioxidant properties
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Junfeng Hao, Zhijun Wang, Yushan Jia, Lin Sun, Zhihui Fu, Muqier Zhao, Yuyu Li, Ning Yuan, Baiming Cong, Lixing Zhao, and Gentu Ge
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Lactuca indica L. cv. Mengzao ,flavonoids ,ultrasound-assisted extraction ,UPLC–MS ,antioxidant activity ,Nutrition. Foods and food supply ,TX341-641 - Abstract
In this study, the ultrasound-assisted extraction (UAE) conditions of flavonoids from Lactuca indica L.cv. Mengzao (LIM) leaves was optimized, and the flavonoids content and their antioxidant potential in different parts were analyzed. The optimal extraction parameters to obtain the highest total flavonoids content (TFC) were a a ratio of liquid to solid of 24.76 mL/g, ultrasonic power of 411.43 W, ethanol concentration of 58.86% and an extraction time of 30 min, the average TFC of LIM leaves could reach 48.01 mg/g. For the yield of flavonoids, the UAE method had the best extraction capacity compared with solvent extraction and microwave-assisted extraction (MAE). In general, the TFC in different parts of LIM followed the order flower > leaf > stem > root, the flowering period is the most suitable harvesting period. From ultra-high performance liquid chromatography-mass spectrometry (UPLC–MS) quantification, the flower samples showed significantly higher six flavonoids and had the highest radical scavenging capacities compared to other samples. A high positive correlation was observed between the antioxidant activity and TFC, luteolin-7-O-glucoside and rutin were significantly (p < 0.05) correlated with all antioxidant evaluations. This study provides valuable information for the development and utilization of flavonoids in Lactuca indica as ingredients in food, feed and nutritional health products.
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- 2023
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24. Changes of immune-related factors in the blood of schizophrenia and bipolar disorder patients receiving monotherapy
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Fangyuan Duan, Shunan Zhao, Cuihua Xia, Zongyao Ren, Ning Yuan, Li Xie, Le Wang, Yifan Xiong, Pei Yu, Yu Chen, Jianghua Tian, Jiacheng Dai, Jiaqi Lu, Yan Xia, Xuejun Liu, Chao Chen, and Chunyu Liu
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Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Abstract Schizophrenia (SCZ) and bipolar disorder (BPD) are associated with abnormal expression of immune-related factors (IRFs), which have been proposed as biomarkers of either disease diagnosis (trait markers) or treatment (state markers). However, the state markers have been found to be less reproducible than the trait markers in previous studies. In the current study, we focused on the changes of IRFs in blood of SCZ and BPD patients receiving monotherapy. SCZ (N = 49) and BPD (N = 49) Chinese patients were recruited at acute episode and followed for 9 to 51 days until remission. Blood samples were collected at two state-points, acute state before treatment and remission state after treatment. A total of 41 IRFs in plasma were quantified by the Luminex assay. After adjusting covariates, we found four cytokines or cytokine receptors were significantly increased at remission when compared to acute episode in all the patients, including CD30, BAFF, CCL20, and CXCL10 (Bonferroni corrected p
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- 2022
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25. Negative association of time in range and urinary albumin excretion rate in patients with type 2 diabetes mellitus: a retrospective study of inpatients
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Sanbao Chai, Shanshan Wu, Sixu Xin, Ning Yuan, Jianbin Sun, Xiaomei Zhang, Linong Ji, and Jing Ni
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Medicine - Abstract
Abstract. Background:. Time in range (TIR) refers to the time an individual spends within their target glucose range, which now has been popularized as an important metric to classify glycemic management and also recognized as an important outcome of current diabetes therapies. This study aimed to investigate the association between TIR and the severity of the urinary albumin excretion rate (UAER) in patients with type 2 diabetes mellitus (T2DM). Methods:. We retrospectively analyzed the data of 1014 inpatients with T2DM at the Department of Endocrinology and Metabolism of Peking University International Hospital, China. TIR was defined as the percentage of blood glucose within the target range of 3.90–10.00 mmol/L. Urine samples for assessment of UAER were collected for 3 consecutive days from the start of hospitalization. Results:. The TIR values for patients with normal urine levels of albumin, microalbuminuria, and macroalbuminuria were 70% ± 20%, 50% ± 20%, and 30% ± 20%, respectively (all P 83%. The incidences of microalbuminuria in Q1, Q2, Q3, and Q4 were 41.1%, 21.6%, 7.1%, and 5.5% (all P
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- 2022
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26. Nomogram-based risk prediction of macrosomia: a case-control study
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Jing Du, Xiaomei Zhang, Sanbao Chai, Xin Zhao, Jianbin Sun, Ning Yuan, Xiaofeng Yu, and Qiaoling Zhang
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Macrosomia ,Nomogram ,Screening ,Risk factor ,Gynecology and obstetrics ,RG1-991 - Abstract
Abstract Background Macrosomia is closely associated with poor maternal and fetal outcome. But there is short of studies on the risk of macrosomia in early pregnancy. The purpose of this study is to establish a nomogram for predicting macrosomia in the first trimester. Methods A case-control study involving 1549 pregnant women was performed. According to the birth weight of newborn, the subjects were divided into macrosomia group and non-macrosomia group. The risk factors for macrosomia in early pregnancy were analyzed by multivariate logistic regression. A nomogram was used to predict the risk of macrosomia. Results The prevalence of macrosomia was 6.13% (95/1549) in our hospital. Multivariate logistic regression analysis showed that prepregnancy overweight (OR: 2.13 95% CI: 1.18–3.83)/obesity (OR: 3.54, 95% CI: 1.56–8.04), multiparity (OR:1.88, 95% CI: 1.16–3.04), the history of macrosomia (OR: 36.97, 95% CI: 19.90–68.67), the history of GDM/DM (OR: 2.29, 95% CI: 1.31–3.98), the high levels of HbA1c (OR: 1.76, 95% CI: 1.00–3.10) and TC (OR: 1.36, 95% CI: 1.00–1.84) in the first trimester were the risk factors of macrosomia. The area under ROC (the receiver operating characteristic) curve of the nomogram model was 0.807 (95% CI: 0.755–0.859). The sensitivity and specificity of the model were 0.716 and 0.777, respectively. Conclusion The nomogram model provides an effective mothed for clinicians to predict macrosomia in the first trimester.
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- 2022
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27. Untreated thyroid autoantibody-negative SCH increases the risk of spontaneous abortions
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Ning Yuan, Jianbin Sun, Xin Zhao, Jing Du, Min Nan, Qiaoling Zhang, and Xiaomei Zhang
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subclinical hypothyroidism ,levothyroxine ,pregnancy outcomes ,Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
Background: Numerous studies have found that subclinical hypothyroidism (SCH) may increase adverse pregnancy outcomes; however, the benefit of levothyroxine (LT4) treatment remains controversial. The 2017 guidelines of the American Thyroid Association weakly recommended LT4 therapy for serum antithyroi d peroxidase antibody (TPOAb)-negative women with thyroid-stimulating hormone (TSH) concentrations greater than the pregnancy-specific reference range and below 10.0 mU/L. Therefore, the primary goal of this study was to investigate the correlation between thyroid autoantibody-negative SCH with or without LT4 treatment and adverse pregnancy outcomes. Methods: We prospectively enrolled 1868 consecutive pregnant women. Finally, 1344 women were involved in the study according to the inclusion and exclusion criteria. Assays for TSH, free thyroxine (FT4), TPOAb, anti-thyroglobulin antibody, and laboratory indicators were performed. The participants were divided into the euthyroid (ET) group (n = 1250) and the SCH group(n = 94). The SCH group was further divided into LT4 group (n = 40) and non-LT4 group(n = 54). The laboratory indicators and pregnancy outcomes were evaluated during follow-ups. Results: Maternal age, BMI, parity, and the history of spontaneous abortion did not differ significantly between the ET group and the different SCH gr oups. There were no significant differences in lipid profile and homocysteine levels b etween ET and SCH group in the first and third trimester of pregnancy. After adjus ting the confounding factors, the non-LT4 group was a risk factor for spontaneous abortion (odds ratio: 3.141, 95% CI: 1.060–9.302). Survival analysis showed that the time of abortion was different between the ET group and SCH group (log-rank P = 0.042). The spontaneous abortion in SCH, especially in non-LT4, group mainly occurred in the first t rimester of pregnancy. Conclusions: Thyroid autoantibody negative-SCH seems to be associated with increased risk of spontaneous abortions during the first trimester of preg nancy. LT4 therapy in this patient population might be beneficial to reduce adverse pregnan cy outcomes.
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- 2022
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28. Longitudinal Spinous‐Splitting Laminoplasty with Coral Bone for the Treatment of Cervical Adjacent Segment Degenerative Disease: A 5‐Year Follow‐up Study
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Wei He, Da He, Qi‐long Wang, Wei Tian, Bo Liu, Ya‐jun Liu, Yu‐qing Sun, Yong‐gang Xing, Ning Yuan, Qiang Yuan, Bin Xiao, Bing Han, Yu‐mei Wang, Teng‐fei Ma, and Ming‐ming Liu
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Adjacent segment disease ,Cervical vertebrae ,Laminectomy ,Spinous process ,Orthopedic surgery ,RD701-811 - Abstract
This study was designed to analyze the causes of cervical adjacent segment degenerative disease (ASDis), evaluate the surgical outcomes of longitudinal spinous‐splitting laminoplasty with coral bone (SLAC) during cervical reoperation, and accumulate data on reoperation with SLAC in a primary hospital. Based on the inclusion and exclusion criteria, we conducted a retrospective study involving 52 patients who underwent cervical reoperation for ASDis using SLAC at the spinal surgery department of the Beijing Jishuitan Hospital from 1998 to 2014. Among them, 39 were treated with anterior cervical fusion and internal fixation during the first operation (anterior cervical corpectomy with fusion [ACCF], n = 24; anterior cervical discectomy and fusion [ACDF], n = 11; and cervical disc arthroplasty [CDA], n = 4). Outcomes were the Japanese Orthopaedic Association (JOA) score, neck disability index (NDI) score, upper limb/neck and shoulder evaluated using a visual analogue scale (VAS), and rates of ASDis. In patients who underwent an anterior cervical approach in the first instance, the incidence of ASDis was significantly higher in the C3/4 gap than in the other gaps. In the ACCF group, the lateral radiograph of the cervical spine revealed that the distance between the anterior cervical plate and the adjacent segment disc was 5 (average, 6.2) years. The pre‐reoperation and last follow‐up values were as follows: mean Japanese Orthopaedic Association score, 10.2 ± 1.5 vs 15.5 ± 0.7 (P = 0.03); neck disability index, 26.2 vs 13.6 points (P = 0.01); upper‐limb visual analog scale (VAS) score, 6.1 vs 2.6 points (P = 0.04); and neck and shoulder VAS score, 6.6 vs 2.1 points (P = 0.03). SLAC is a simple technique in which the local anatomy is clearly visible and satisfactory clinical outcomes are obtained.
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- 2022
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29. Heterogeneous Information Network Representation Learning Incorporating Community Structure
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Wei Yu, Guangquan Xu, Xiaoming Li, Xue Chen, Ying Sun, and Ning Yuan
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Network embedding ,community-augmented ,node embedding ,community embedding ,heterogeneous information network ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 - Abstract
Network embedding usually learns the node representations using their local context information. However, as an important mesoscopic description of network structures, community structures hidden in the networks have been largely ignored. Incorporating community structures into network embedding could provide effective and a wealth of information to overcome the problem of sparse data in local structures, and make the learned node representation more identifiable. Inspired by this, we propose a representation learning model of community-augmented heterogeneous information network embedding (CAHE), which integrates community structure to preserve community structure information of various types of nodes. In detail, we assume that the different types of nodes exist in the different community structures for a heterogeneous information network, and define community embedding as a set of Mixture Gaussian models. Then, we unify the community embedding of all types of nodes to improve the capacity of network representation. A large of experimental results of several kinds of homogeneous and heterogeneous information network representation learning on two public datasets suggest that the proposed CAHE is superior to other several state-of-art methods.
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- 2022
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30. Paget-Schroetter syndrome in a non athlete - a case report
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Yat Sing Lee, FRCR, MB BS (HK), Fung Him Ng, FRCR, FHKAM (Radiology), Ning Yuan Pan, FRCR, FHKAM (Radiology), and Johnny Ka Fai Ma, FRCR, FHKAM (Radiology)
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Paget-Schroetter syndrome ,Effort thrombosis ,Deep venous thrombosis ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 - Abstract
A young male waiter presented with left shoulder pain, with ultrasound showing thrombosis of the left subclavian vein. After exclusion of hypercoagulability, a dynamic MRI upper limb venogram was performed, confirming Paget-Schroetter syndrome (PSS). Our case is unusual as Paget Schroetter syndrome are seldom reported in non athletes. This is also the first report to show dynamic MRI images of PSS.
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- 2021
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31. A suitable method for alpine wetland delineation: An example for the headwater area of the yellow river, Tibetan Plateau
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Tao Yin, Yuqing Feng, Sihai Liang, Guangjun Wang, Ning Yuan, Dezhao Yan, Pan Wu, Xingxing Kuang, and Li Wan
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landsat 8 OLI ,headwater area of the yellow river ,object-oriented and decision tree ,wetland extraction ,alpine areas ,Environmental sciences ,GE1-350 - Abstract
Alpine wetlands are one of the most important ecosystems in the Three Rivers Source Area, China, which plays an important role in regulating the regional hydrological cycle and carbon cycle. Accordingly, Wetland area and its distribution are of great significance for wetland management and scientific research. In our study, a new wetland classification model which based on geomorphological types and combine object-oriented and decision tree classification model (ODTC), and used a new wetland classification system to accurately extract the wetland distributed in the Headwater Area of the Yellow River (HAYR) of the Qinghai-Tibet Plateau (QTP), China. The object-oriented method was first used to segment the image into several areas according to similarity in Pixels and Textures, and then the wetland was extracted through a decision tree constructed based on geomorphological types. The wetland extracted by the model was compared with that by other seven commonly methods, such as support vector machine (SVM) and random forest (RF), and it proved the accuracy was improved by 10%–20%. The overall classification accuracy rate was 98.9%. According to our results, the HAYR’s wetland area is 3142.3 km2, accounting for 16.1% of the study area. Marsh wetlands and flood wetlands accounted for 37.7% and 16.7% respectively. A three-dimensional map of the area showed that alpine wetlands in the research region are distributed around lakes, piedmont groundwater overflow belts, and inter-mountain catchment basin. This phenomenon demonstrates that hydrogeological circumstances influence alpine wetlands’ genesis and evolution. This work provides a new approach to investigating alpine wetlands.
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- 2022
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32. Spatial gathering characteristics of drought in the Qinghai-Tibet Plateau
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Ning Yuan, Yuqing Feng, Sihai Liang, Guangjun Wang, Tao Yin, Dezhao Yan, Pan Wu, Xingxing Kuang, and Li Wan
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climate change ,drought ,gathering characteristics ,empirical orthogonal function ,Qinghai-Tibet Plateau ,Environmental sciences ,GE1-350 - Abstract
Due to climate change, drought has caused serious impacts on the eco-environment, hydrology and agriculture, and drought events in the Qinghai-Tibet Plateau (QTP) have become more severer and frequent; therefore, understanding the characteristics and variations of drought is crucial to reduce its eco-environmental and socio-economic impacts. This study used the Standardized Precipitation Evapotranspiration Index (SPEI) to identify drought and assessed its interannual changes from 1980 to 2020. Then, the Hurst exponent and intensity analysis were used to identify future drought trend and the characteristics of drought intensity. Moreover, Empirical Orthogonal Function (EOF) analysis was performed to examine the main spatial gathering characteristics. The results indicate that: 1) the QTP was becoming wetter in general, and drying places were mainly distributed in the southeast and northeast of the QTP, as well as the Qaidam Basin accounting for 27% areas of QTP. 2) The trend of wet and dry in the future in most regions would be the same as the present, only 10% of the regions would have the reverse trend. 3) The rate of wet/drought changes was faster in the 1980s and 2000s. 4) The EOF mode1 revealed a gathering distribution structure with negative values in the southeast and east of the QTP and positive values in the center and west. The west was more sensitive to the variation of dry and wet, and most areas will continue to be wet in the future. EOF mode2 and mode3 mainly indicated opposite gathering patterns of southwest-northeast and south-north. The results provide favorable evidence for policymakers to better understand and prevent drought.
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- 2022
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33. Carbon‐based flexible self‐supporting cathode for lithium‐sulfur batteries: Progress and perspective
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Qinghuiqiang Xiao, Jinlin Yang, Xiaodong Wang, Yirui Deng, Peng Han, Ning Yuan, Lei Zhang, Ming Feng, Chang‐an Wang, and Ruiping Liu
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carbon ,flexible ,lithium sulfur batteries ,self‐supporting ,Production of electric energy or power. Powerplants. Central stations ,TK1001-1841 - Abstract
Abstract The flexible self‐supporting electrode can maintain good mechanical and electrical properties while retaining high specific capacity, which meets the requirements of flexible batteries. Lithium‐sulfur batteries (LSBs), as a new generation of energy storage system, hold much higher theoretical energy density than traditional batteries, and they have attracted extensive attention from both the academic and industrial communities. Selection of a proper substrate material is important for the flexible self‐supporting electrode. Carbon materials, with the advantages of light weight, high conductivity, strong structural plasticity, and low cost, provide the electrode with a large loading space for the active material and a conductive network. This makes the carbon materials meet the mechanical and electrochemical requirements of flexible electrodes. In this paper, the commonly used fabrication methods and recent research progresses of the flexible self‐supporting cathode with a carbon material as the substrate are introduced. Various sulfur loading methods are summarized, which provides useful information for the structural design of the cathode. As the first review article of the carbon‐based flexible self‐supporting LSB cathodes, it provides valuable guidance for the researchers working in the field of LSB.
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- 2021
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34. Relationship between the Central and Peripheral Thyroid Sensitivity Indices and Fetal Macrosomia: A Cohort Study of Euthyroid Pregnant Women in China
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Xin Zhao, Jianbin Sun, Ning Yuan, and Xiaomei Zhang
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thyroid sensitivity ,gestational diabetes mellitus ,macrosomia ,glycosylated hemoglobin ,Medicine (General) ,R5-920 - Abstract
(1) Background: To explore the correlation between central and peripheral thyroid sensitivity indices and macrosomia in euthyroid pregnant women and to provide clinical basis for the prevention and treatment of macrosomia. (2) Methods: This study is a prospective study. A total of 1176 euthyroid women in early pregnancy in the obstetrics department of Peking University International Hospital from December 2017 to March 2019 were enrolled. The women were divided into two groups, namely the macrosomia and non-macrosomia groups, according to birth weight. (3) Results: The level of free triiodothyronine (FT3), thyroid-stimulating hormone (TSH), thyroid feedback quantile-based index (TFQI), thyrotropin-T4 resistance index (TT4RI), thyroid-stimulating hormone index (TSHI), and free triiodothyronine/free thyroxine (FT3/FT4) in the macrosomia group was higher than that in the non-macrosomia group (p < 0.05). The multivariate logistic regression model showed that FT3, TFQI, TT4RI, TSHI, and FT3/FT4 were independent risk factors for macrosomia in early pregnancy after adjusting for age, body mass index, parity, blood pressure, blood glucose, and blood lipid levels (p < 0.05, respectively). (4) Conclusions: TFQI, TT4RI, TSHI, and FT3/FT4 are independent risk factors for fetal macrosomia in early pregnancy in euthyroid women.
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- 2023
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35. Tracking the Progression of the Simulated Bronze Disease—A Laboratory X-ray Microtomography Study
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Zedong Wang, Xiaoqi Xi, Lei Li, Zhicun Zhang, Yu Han, Xinguang Wang, Zhaoying Sun, Hongfeng Zhao, Ning Yuan, Huimin Li, Bin Yan, and Jiachang Chen
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bronze disease ,in situ X-ray microtomography image ,simulation experiment ,metal corrosion ,Organic chemistry ,QD241-441 - Abstract
The internal three-dimensional characteristics of X-ray microtomography (micro-CT) has great application potential in the field of bronze corrosion. This work presents a method of simulating bronze disease based on an in situ micro-CT image to study the characteristics of the oxidative hydrolysis reactions of copper(I) chloride and copper(II) chloride dihydrate. A series of high-resolution reconstruction images were obtained by carrying out micro-CT at three key points throughout the experiment. We found that the reactions of copper(I) chloride and copper(II) chloride dihydrate showed different characteristics at different stages of the simulation in the micro-CT view. The method proposed in this work specifically simulated one single type of bronze corrosion and characterized the evolution characteristics of simulated bronze disease. It provides a new perspective to investigate bronze disease and can help improve the subsequent use of micro-CT to distinguish real bronze corrosions.
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- 2023
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36. Correction: Whole-exome sequencing of BRCA-negative breast cancer patients and case–control analyses identify variants associated with breast cancer susceptibility
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Ning Yuan Lee, Melissa Hum, Aseervatham Anusha Amali, Wei Kiat Lim, Matthew Wong, Matthew Khine Myint, Ru Jin Tay, Pei-Yi Ong, Jens Samol, Chia Wei Lim, Peter Ang, Min-Han Tan, Soo-Chin Lee, and Ann S. G. Lee
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Medicine ,Genetics ,QH426-470 - Published
- 2022
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37. Relationship between anti-thyroid peroxidase antibody positivity and pregnancy-related and fetal outcomes in Euthyroid women: a single-center cohort study
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Ning Yuan, Jianbin Sun, Zhi Li, Sanbao Chai, Xiaomei Zhang, and Linong Ji
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Thyroid peroxidase antibodies ,Euthyroid ,Pregnancy and fetal outcomes ,Gynecology and obstetrics ,RG1-991 - Abstract
Abstract Background Thyroid autoimmunity (TAI) and subclinical hypothyroidism (SCH) have been associated with poor pregnancy and fetal outcomes. However, whether euthyroid women with anti-thyroid peroxidase antibody (TPOAb) positivity have a higher risk of poor pregnancy and fetal outcomes is debatable. Therefore, this study aimed to investigate the association between TPOAb positivity and pregnancy-related and fetal outcomes in euthyroid women. Methods In total, 938 pregnant women participated in this prospective cohort study. The euthyroid group included 837 pregnant women and the TPOAb-positive group included 101 euthyroid pregnant women. Serum TPOAb, thyroglobulin antibody (TGAb), thyroid-stimulating hormone (TSH), and free thyroxine (FT4) levels were assessed. Pregnancy and fetal outcomes included gestational diabetes mellitus, spontaneous abortion, premature rupture of membranes, hypertensive disorders of pregnancy, preterm birth, fetal distress, low birth weight, fetal macrosomia, and small for gestational age infant. Results Logistic regression analysis showed TPOAb positivity was not associated with an increased risk of poor pregnancy or fetal outcomes in euthyroid women. However, TPOAb-positive euthyroid women pregnant with a female fetus were independently associated with preterm births (OR: 4.511, 95% CI: 1.075–18.926) after adjustment for potential confounding factors. Conclusions TPOAb positivity was not found to be associated with poor pregnancy-related or fetal outcomes in euthyroid women. However, in euthyroid women with a female fetus, TPOAb positivity was strongly associated with preterm births. The risk of preterm birth in the euthyroid women with TPOAb positivity should be emphasized in clinical practice. Trial registration ClinicalTrials.gov Identifier: NCT02966405 . Registered on October 24th 2016 - Retrospectively registered.
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- 2020
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38. Transcriptomic Analysis Reveals the Mechanism of Lignin Biosynthesis in Fresh-Cut Cucumber
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Yi Wang, Ning Yuan, Yuge Guan, Chen Chen, and Wenzhong Hu
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fresh-cut cucumber ,transcriptomic ,lignin ,amino acid metabolism ,lipid metabolism ,phenylpropanoid biosynthesis ,Plant culture ,SB1-1110 - Abstract
When subjected to a certain degree of mechanical damages, a systematic responsive mechanism of fresh-cut cucumber is activated. Among them, the lignin produced in the secondary metabolism will make the fresh-cut cucumber lignified, which will increase the hardness and whiten the cutting surface of the fresh-cut cucumber, seriously affecting the taste and appearance quality. In order to further understand the mechanism of lignin synthesis, transcriptome analysis was carried out on two cutting types of fruit samples from the slices treatment (P) and shreds treatment (S) stored for 24 h. Compared with the whole fruit (CK), 2281 and 2259 differentially expressed genes (EDGs) were identified in the slices and shreds treatments, respectively; 1442 up-regulated genes and 839 down-regulated genes were expressed as 2281 in the slices treatment; 1475 significantly up-regulated genes and 784 significantly down-regulated genes were expressed as 2259 in the shreds treatment; and 1582 DEGs were commonly detected between the slices treatment and shreds treatment, indicating that these DEGs were related to lignin synthesis. Gene Ontology (GO) enrichment and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis showed that compared with the whole fruit, the metabolic pathways of amino acid metabolism, lipid metabolism, and secondary metabolism were affected by mechanical damages. This study revealed that JA biosynthesis was activated by mechanical damages, and the up-regulation of phenylalanine metabolism and phenylalanine, tyrosine, and tryptophan metabolism affected phenylpropanoid biosynthesis, which may promote lignin synthesis. Fifteen DEGs were selected for qRT-PCR validation, and the reliability and accuracy of transcriptome data were confirmed.
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- 2023
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39. Effect of Wounding Intensity on Edible Quality by Regulating Physiological and ROS Metabolism in Fresh-Cut Pumpkins
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Wenzhong Hu, Yuge Guan, Yi Wang, and Ning Yuan
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fresh-cut pumpkins ,wounding intensities ,reactive oxygen species ,edible quality ,Plant culture ,SB1-1110 - Abstract
Fresh-cut pumpkin is favored by consumers for its environmental protection, safety, and convenience at home and abroad. To investigate the effect of different wounding intensities (piece, strip and slice, corresponding to 1.90, 3.53 and 6.29 m2 kg−1) on the quality of fresh-cut pumpkin, the critical indexes involved in reactive oxygen species (ROS) metabolism, vitamin C-glutathione cycle, phenylpropanoid metabolism and membrane lipid peroxidation were monitored for pumpkin during storage at 4 °C for 6 d. The results showed that with the increase in cutting injury strength, the lightness, whiteness index, respiration rate, ethylene content, lipoxygenase activity and malondialdehyde content of fresh-cut pumpkin increased, while the hardness, sensory quality, appearance and total soluble solid content continuously decreased. The quality deterioration was the most severe in the slice group, while a higher sensory quality was maintained in the piece after 6 d of storage. However, the activity of phenylalanine ammonia-lyase increased and then contributed to the synthesis of the phenolic compound, which resulted in enhancements of 79.13%, 29.47% and 16.14% in piece, strip and slice, respectively. Meanwhile, cutting enhanced the activity of antioxidant enzymes including ascorbate peroxidase, glutathione reductase, superoxide dismutase and catalase, resulting in the enhancement of antioxidant activity in fresh-cut pumpkin. The collected results showed that the wounding intensities have an obvious influence on the quality by regulating physiological and ROS metabolism.
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- 2023
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40. Effect of a Dairy Cow’s Feeding System on the Flavor of Raw Milk: Indoor Feeding or Grazing
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Xuelu Chi, Ning Yuan, Yangdong Zhang, Nan Zheng, and Huimin Liu
- Subjects
grazing ,indoor feeding ,flavor ,taste ,raw milk ,Chemical technology ,TP1-1185 - Abstract
The flavor of fresh, raw milk is considered to be the key to maintaining the quality of dairy products, and is very crucial in affecting a consumer’s choice. To better understand the differences in flavor of fresh milk between feeding patterns, we conducted the following study. Twelve Holstein cows reared in pure grazing mode and twelve reared intensively in medium to large farms were selected from the Xinjiang Uygur Autonomous Regions at the same time, and the flavor of their raw milk was analyzed. Aroma profiles and taste attributes were assessed by electronic nose and electronic tongue, respectively, and volatile flavor compounds were characterized and quantified by Headspace-Solid Phase Microextraction/Gas Chromatography-Mass Spectrometry. Thirteen volatile compounds were identified in the indoor feeding pattern and 12 in the grazing; most of them overlapped. W1S, W2S and W5S were the main contributing sensors of the electronic nose for the overall assessment of the aroma profile. Raw milk from grazing had more intense astringency, bitterness, sourness and richness in taste compared to indoor feeding. Different dietary conditions may contribute to a variety of aroma profiles. Oxime-, methoxy-phenyl-, octadecanoic acid, furfural and dodecanoic acid were the key volatile flavor compounds of grazing. Meanwhile, raw milk from indoor feeding patterns was unique in 2-nonanone, heptanoic acid and n-decanoic acid. All three detection techniques were valid and feasible for differentiating raw milk in both feeding patterns, and the compounds were significantly correlated with the key sensors by correlation analysis. This study is promising for the future use of metabolic sources of volatile organic compounds to track and monitor animal feeding systems.
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- 2023
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41. Effect of Nisin on the Quality and Antioxidant Activity of Fresh-Cut Pumpkins (Cucurbita moschata Duch.)
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Ning Yuan, Yi Wang, Yuge Guan, Chen Chen, and Wenzhong Hu
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fresh-cut pumpkins ,nisin ,reactive oxygen species ,ascorbate-glutathione ,Plant culture ,SB1-1110 - Abstract
Fresh-cut pumpkins refer to fresh pumpkin that has been graded, cleaned, peeled, sliced, preserved, and packaged. It has the qualities of freshness, nutrition, convenience, and being 100% edible. However, mechanical damages during the cutting processing can accelerate the quality deterioration, aging, and loss of nutritional values of fresh-cut pumpkins. Nisin, a natural preservative, has been widely used in fruits and vegetables with good preservation effects. To investigate the effect of different concentrations (0, 0.2, 0.4, and 0.6 g/L) of nisin on the quality of fresh-cut pumpkins, the critical indexes involved in weight loss, firmness, color, respiration intensity, reactive oxygen species (ROS) metabolism, ascorbate (AsA)—glutathione (GSH) cycle, and antioxidant capacity were monitored for fresh-cut pumpkins during storage at 4 °C for 10 days. The results showed that 0.4 g/L nisin was the best preservation concentration. Compared with 0 g/L nisin, 0.4 g/L nisin reduced the weight loss rate and whitening rate of fresh-cut pumpkins by 13.53% and 13.61%, inhibited respiration rate by 45.83%, and maintained hardness by 1.18 times. Meanwhile, 0.4 g/L nisin increased the activities of superoxide dismutase (SOD), catalase (CAT), ascorbate peroxidase (APX), and glutathione reductase (GR) and maintained higher contents of GSH and AsA. It prevented the rapid increase in ROS levels by improving antioxidant capacity, including DPPH, ABTS free radical scavenging rate, and T-AOC (total antioxidant capacity). The collected results showed that nisin has an obvious influence on the quality by regulating physiological and antioxidant activity metabolism. It is envisaged that the combination of nisin and physical and chemical preservation technology will further enhance the quality of fresh-cut pumpkins during storage in the future.
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- 2023
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42. Analysis of Volatile Organic Compounds in Milk during Heat Treatment Based on E-Nose, E-Tongue and HS-SPME-GC-MS
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Ning Yuan, Xuelu Chi, Qiaoyan Ye, Huimin Liu, and Nan Zheng
- Subjects
milk ,VOCs ,E-nose ,E-tongue ,HS-SPME-GC-MS ,Chemical technology ,TP1-1185 - Abstract
Volatile organic compounds (VOCs) make up milk flavor and are essential attributes for consumers to evaluate milk quality. In order to investigate the influence of heat treatment on the VOCs of milk, electronic nose (E-nose), electronic tongue (E-tongue) and headspace solid-phase microextraction (HS-SPME)–gas chromatography–mass spectrometry (GC-MS) technology were used to evaluate the changes in VOCs in milk during 65 °C heat treatment and 135 °C heat treatment. The E-nose revealed differences in the overall flavor of milk, and the overall flavor performance of milk after heat treatment at 65 °C for 30 min is similar to that of raw milk, which can maximize the preservation of the original taste of milk. However, both were significantly different to the 135 °C-treated milk. The E-tongue results showed that the different processing techniques significantly affected taste presentation. In terms of taste performance, the sweetness of raw milk was more prominent, the saltiness of milk treated at 65 °C was more prominent, and the bitterness of milk treated at 135 °C was more prominent. The results of HS-SPME-GC-MS showed that a total of 43 VOCs were identified in the three types of milk—5 aldehydes, 8 alcohols, 4 ketones, 3 esters, 13 acids, 8 hydrocarbons, 1 nitrogenous compound, and 1 phenol. The amount of acid compounds was dramatically reduced as the heat treatment temperature rose, while ketones, esters, and hydrocarbons were encouraged to accumulate instead. Furfural, 2-heptanone, 2-undecanone, 2-furanmethanol, pentanoic acid ethyl ester, 5-octanolide, and 4,7-dimethyl-undecane can be used as the characteristic VOCs of milk treated at 135 °C. Our study provides new evidence for differences in VOCs produced during milk processing and insights into quality control during milk production.
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- 2023
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43. FKF1 Interacts with CHUP1 and Regulates Chloroplast Movement in Arabidopsis
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Ning Yuan, Lavanya Mendu, Kaushik Ghose, Carlie Shea Witte, Julia Frugoli, and Venugopal Mendu
- Subjects
Arabidopsis thaliana ,avoidance response ,blue light ,chloroplast movement ,light receptor ,photorelocation ,Botany ,QK1-989 - Abstract
Plants have mechanisms to relocate chloroplasts based on light intensities in order to maximize photosynthesis and reduce photodamage. Under low light, chloroplasts move to the periclinal walls to increase photosynthesis (accumulation) and move to the anticlinal walls under high light to avoid photodamage, and even cell death (avoidance). Arabidopsis blue light receptors phot1 and phot2 (phototropins) have been reported to regulate chloroplast movement. This study discovered that another blue light receptor, FLAVIN-BINDING KELCH REPEAT F-BOX1 (FKF1), regulates chloroplast photorelocation by physically interacting with chloroplast unusual positioning protein 1 (CHUP1), a critical component of the chloroplast motility system. Leaf cross-sectioning and red-light transmittance results showed that overexpression of FKF1 compromised the avoidance response, while the absence of FKF1 enhanced chloroplast movements under high light. Western blot analysis showed that CHUP1 protein abundance is altered in FKF1 mutants and overexpression lines, indicating a potential regulation of CHUP1 by FKF1. qPCR results showed that two photorelocation pathway genes, JAC1 and THRUMIN1, were upregulated in FKF1-OE lines, and overexpression of FKF1 in the THRUMIN1 mutant weakened its accumulation and avoidance responses, indicating that JAC1 and THRUMIN1 may play a role in the FKF1-mediated chloroplast avoidance response. However, the precise functional roles of JAC1 and THRUMIN1 in this process are not known.
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- 2023
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44. A close look at the conformational transitions of a helical polymer in its response to environmental stimuli
- Author
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Shuangshuang Zhang, Ning Yuan, Weiping Li, Cuifang Wang, Fuxin Li, Jian Xu, and Tongchuan Suo
- Subjects
Physics ,QC1-999 - Abstract
We present a study of the conformational transitions of a helical polymer by using coarse-grained molecular dynamics simulations. With focus on the variation of the dihedral angles, we are able to obtain the monomer-level details of the response of the polymer chain to environmental stimuli (e.g., temperature variation and mechanical forces). Specifically, during the thermo-induced helix–coil transition, all the helices break synchronously. On the contrary, the force-induced helix breaking always starts from the termini, and then the chain behaviors become divergent and temperature dependent. Particularly, at intermediate temperatures, we find that our polymer chain can adopt an asymmetrical half-trans conformation during the stretching procedures, although the chain itself has quite uniform and homogeneous composition.
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- 2021
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45. MicroRNA396-mediated alteration in plant development and salinity stress response in creeping bentgrass
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Shuangrong Yuan, Junming Zhao, Zhigang Li, Qian Hu, Ning Yuan, Man Zhou, Xiaoxia Xia, Rooksie Noorai, Christopher Saski, Shigui Li, and Hong Luo
- Subjects
Botany ,QK1-989 ,Plant culture ,SB1-1110 - Abstract
Salt tolerance: How plants handle high (salt) stress situations A small molecule, miR396, plays a big role in how plants respond to salt stress, a growing constraint on global crop yield. Salt stress prevents plants from absorbing nutrients, causes oxidative stress, and destroys key cellular machinery; some plants cope better than others. Hong Luo at Clemson University in South Carolina, USA and coworkers investigated how creeping bentgrass handles high salinity, focusing on the microRNA miR396, previously implicated in salt tolerance. Artificially elevating miR396 improved bentgrass’ salt tolerance. Further investigation showed that miR396 triggered increases in proteins that pump excess salt out of cells, others that prevent water loss, and antioxidant production. miR396 was found to be a master regulator that orchestrates many lines of defense against excess salt. Understanding how these pathways are activated and integrated could help in breeding more salt-tolerant crops.
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- 2019
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46. Positive Association of Leptin and Artery Calcification of Lower Extremity in Patients With Type 2 Diabetes Mellitus: A Pilot Study
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SanBao Chai, Yao Chen, SiXu Xin, Ning Yuan, YuFang Liu, JianBin Sun, XiangYu Meng, and YongFen Qi
- Subjects
leptin ,type 2 diabetes mellitus ,VSMC ,artery calcification ,phenotypic switch ,Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
ObjectiveWe aimed to explore the role and possible mechanism of leptin in lower-extremity artery calcification in patients with type 2 diabetes mellitus (T2DM).MethodsWe recruited 59 male patients with T2DM and 39 non-diabetic male participants. All participants underwent computed tomography scan of lower-extremity arteries. The calcification scores (CSs) were analyzed by standardized software. Plasma leptin level was determined by radioimmunoassay kits. Human vascular smooth muscle cells (VSMCs) calcification model was established by beta-glycerophosphate and calcium chlorideinduction. Calcium deposition and mineralization were measured by the o-cresolphthalein complexone method and Alizarin Red staining. The mRNA expression of bone morphogenic protein 2 (BMP2), runt-related transcription factor 2 (Runx2), osteocalcin (OCN) and osteopontin (OPN) was determined by quantitative RT-PCR. The protein levels of BMP2, Runx2, α-smooth muscle actin (α-SMA) and (p)-Akt was determined by Western-blot analysis, and α-SMA was also measured by immunofluorescence analysis.ResultsCompared with controls, patients with T2DM showed higher median calcification score in lower-extremity artery [286.50 (IQR 83.41, 1082.00) vs 68.66 (3.41, 141.30), p
- Published
- 2021
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47. Copper-catalysed synthesis of chiral alkynyl cyclopropanes using enantioconvergent radical cross-coupling of cyclopropyl halides with terminal alkynes
- Author
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Gao, Zeng, Liu, Lin, Liu, Ji-Ren, Wang, Wang, Yang, Ning-Yuan, Tao, Lizhi, Li, Zhong-Liang, Gu, Qiang-Shuai, and Liu, Xin-Yuan
- Published
- 2025
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48. Primary squamous cell carcinoma of the thyroid: a case report
- Author
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Sixu Xin, Wei Li, Ning Yuan, Chao Shen, Dongdong Zhang, and Sanbao Chai
- Subjects
Medicine (General) ,R5-920 - Abstract
Primary squamous cell carcinoma of the thyroid (PSCCT) is a rare and rapidly progressive malignancy that carries a poor prognosis. PSCCT is easily misdiagnosed as acute thyroiditis or as another thyroid malignancy. We have reported a 76-year-old woman who presented with progressive neck pain for 1 month. Thyroid function tests revealed subclinical thyrotoxicosis. Ultrasound disclosed a solid nodule with calcification in the right thyroid lobe. Laboratory findings included neutrophilic leukocytosis and an elevated erythrocyte sedimentation rate. The patient’s condition was diagnosed as subacute thyroiditis, and she was treated with cefixime and ibuprofen. However, her treatment response was poor. She was then treated with oral prednisone. Her neck pain gradually resolved. The patient subsequently developed dysphagia, choking, dyspnea, and dysphonia with an insidious onset. Further examinations including computed tomography and painless gastroscopy revealed that the volume of the thyroid gland had increased significantly, extending to the anterior superior mediastinum. The trachea and esophagus were stenotic because of external compression. Partial thyroidectomy and tracheotomy were performed under extracorporeal membrane oxygenation. The diagnosis of PSCCT was established via histopathology and immunohistochemistry.
- Published
- 2021
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49. Effects of Harvesting Period and Storage Duration on Volatile Organic Compounds and Nutritive Qualities of Alfalfa
- Author
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Ning Yuan, Lin Sun, Shuai Du, Gentu Ge, Zhijun Wang, Yuyu Li, Jian Bao, Muqier Zhao, Qiang Si, Junfeng Hao, and Yushan Jia
- Subjects
alfalfa ,VOCs ,nutritional quality ,harvest period ,storage duration ,HS-SPME-GC-MS ,Agriculture (General) ,S1-972 - Abstract
Harvest time and storage time had significant effects on nutrient quality and Volatile Organic Compounds (VOCs) of alfalfa. The objective of this study was to use headspace solid-phase microextraction gas chromatography-mass spectrometry (HS-SPME-GC-MS) to analyze alfalfa at different harvest periods (budding stage, early blooming, full blooming), and storage for 0 d, 90 d, 180 d, 270 d, and 360 d, the dynamic changes in VOCs and nutritional quality. Results indicated that ketones, aldehydes, alcohols and esters were the main volatile components of alfalfa VOCs, accounting for 87.41%, 88.57% and 90.85% of the total volatile components at budding stage, early blooming and full blooming, respectively. VOCs and nutrient quality of alfalfa varied significantly in different harvest periods; delayed harvesting significantly reduced alfalfa aldehydes, alcohols, crude protein (CP), and total digestible nutrients (TDN) and significantly increased ketone, dry matter (DM), acid detergent fiber (ADF) and neutral detergent fiber (NDF) contents (p < 0.05). After Comprehensive consideration ofthe yield, nutritional quality and VOCs of alfalfa, the best harvest time was determined to be the budding stage. The VOCs and nutrient quality of alfalfa were significantly different at different storage durations, and ketones, ADF and NDF were significantly increased and significantly reduced DM, CP and TDN (p < 0.05). Ketone content and neutral detergent fiber (NDF) content had a significant positive correlation, (NDF F = 5.5, p = 0.024). Storage 360 d 2-methylbutyraldehyde (musty), 1-octen-3-one (earthy musty odor) content increased. These may be the key compounds that causes the smell of fresh alfalfa to fade away and a musty smell to emerge.
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- 2022
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50. Predictive Value of First-Trimester Glycosylated Hemoglobin Levels in Gestational Diabetes Mellitus: A Chinese Population Cohort Study
- Author
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Jianbin Sun, Sanbao Chai, Xin Zhao, Ning Yuan, Jing Du, Yufang Liu, Zhi Li, and Xiaomei Zhang
- Subjects
Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
This study was aimed at exploring the predictive value of first-trimester glycosylated hemoglobin (HbA1c) levels in the diagnosis of gestational diabetes mellitus (GDM). A total of 744 pregnant women registered at the Peking University International Hospital between March 2017 and March 2019 were included in this study. Data on personal characteristics and biochemical indicators of the pregnant women were collected during the first trimester. The International Association of Diabetes and Pregnancy Study Groups has adopted specific diagnostic criteria as the gold standard for the diagnosis of GDM. Receiver operating characteristic (ROC) curve statistics were used to assess the predictive value of first-trimester HbA1c levels in the diagnosis of GDM. HbA1c levels in the first trimester were significantly higher in the GDM group than in the non-GDM group (5.23%±0.29% vs. 5.06±0.28%, P5.9%. There was no statistical difference between first-trimester HbA1c and fasting blood glucose levels in predicting GDM.
- Published
- 2021
- Full Text
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