93 results on '"Nikpay M"'
Search Results
2. Water displacement by surfactant solution: an experimental study to represent wastewater loss from sewers to saturated soil
- Author
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Nikpay, M., Lazik, D., and Krebs, P.
- Published
- 2015
- Full Text
- View/download PDF
3. P1902 - Verfahren und Vorrichtung zur Abtrennung von Kunststoffpartikeln
- Author
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Nikpay, M.
- Abstract
Die Erfindung betrifft eine Verfahren zur Abtrennung von Kunststoffpartikeln aus einer Flüssigkeit oder einem heterogenen Gemisch, das eine Flüssigkeit enthält oder mit einer Flüssigkeit in Kontakt gebracht wird. Dabei ist vorgesehen, dass (a) die Kunststoffpartikel einem Magnetfeld ausgesetzt werden; (b) an der Oberfläche eines Sammlers Kunststoffpartikel adsorbiert werden; und (c) an der Oberfläche des Sammlers adsorbierte Kunststoffpartikel abgeführt werden.
- Published
- 2020
4. Influence of synthetic wastewater on the isotactic and atactic polypropylene microplastic surfaces
- Author
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Nikpay, M., Siamak, E., and Krebs, P.
- Subjects
FOG ,polypropylene (PP) ,surfactant ,surface roughness ,air pockets ,wastewater - Abstract
The municipal wastewater collection system is recognized as an initial point of interaction between microplastics (MPs) and the urban wastewater matrix. The raw wastewater contains a wide variety of organic and inorganic substances including chemicals and heavy metals. However, the fate of MPs in urban sewer systems is not yet well understood. In this work two types of virgin polypropylene (PP) samples, isotactic (iPP) and atactic (aPP), were exposed to two synthetic wastewater solutions in order to study their effects on the physical properties of the hydrophobic polymer surfaces. Particular attention was paid to the pollution adhesion at the air-liquid-solid interfaces of the surface air pockets entrapped on the polymer surfaces. The first wastewater solution consists of mixed fat, oil and grease (FOG) - surfactant and another which is an exclusively contained wastewater surfactant. The interaction experiment over a period of 10 min between the polymer’s air pocket and solutions indicated that the size of the bubble in the mixed FOG-surfactant solution increased more pronouncedly for iPP (%152) in contrast to aPP (%31) and was also compared with the greater surface roughness of the polymers. The size variation of the spherical cap on the immersed polymer surfaces were measured between 17 µm and 85 µm using image processing techniques while the data was analyzed by the Young-Laplace equation. The corresponding technical surface roughness of the polymers, the surface tension of the liquids and their air/water contact angle on the flat polymer surfaces were also measured. The results of this study indicated that surface air pockets influence the adsorption capacity of MPs and thus their buoyancy and contamination potential.
- Published
- 2020
5. Influence of synthetic wastewater on the isotactic and atactic polypropylene microplastic surfaces
- Author
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(0000-0003-1682-068X) Nikpay, M., (0000-0003-2506-6869) Siamak, E., Krebs, P., (0000-0003-1682-068X) Nikpay, M., (0000-0003-2506-6869) Siamak, E., and Krebs, P.
- Abstract
The municipal wastewater collection system is recognized as an initial point of interaction between microplastics (MPs) and the urban wastewater matrix. The raw wastewater contains a wide variety of organic and inorganic substances including chemicals and heavy metals. However, the fate of MPs in urban sewer systems is not yet well understood. In this work two types of virgin polypropylene (PP) samples, isotactic (iPP) and atactic (aPP), were exposed to two synthetic wastewater solutions in order to study their effects on the physical properties of the hydrophobic polymer surfaces. Particular attention was paid to the pollution adhesion at the air-liquid-solid interfaces of the surface air pockets entrapped on the polymer surfaces. The first wastewater solution consists of mixed fat, oil and grease (FOG) - surfactant and another which is an exclusively contained wastewater surfactant. The interaction experiment over a period of 10 min between the polymer’s air pocket and solutions indicated that the size of the bubble in the mixed FOG-surfactant solution increased more pronouncedly for iPP (%152) in contrast to aPP (%31) and was also compared with the greater surface roughness of the polymers. The size variation of the spherical cap on the immersed polymer surfaces were measured between 17 µm and 85 µm using image processing techniques while the data was analyzed by the Young-Laplace equation. The corresponding technical surface roughness of the polymers, the surface tension of the liquids and their air/water contact angle on the flat polymer surfaces were also measured. The results of this study indicated that surface air pockets influence the adsorption capacity of MPs and thus their buoyancy and contamination potential.
- Published
- 2020
6. P1902 - Verfahren und Vorrichtung zur Abtrennung von Kunststoffpartikeln
- Author
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(0000-0003-1682-068X) Nikpay, M. and (0000-0003-1682-068X) Nikpay, M.
- Abstract
Die Erfindung betrifft eine Verfahren zur Abtrennung von Kunststoffpartikeln aus einer Flüssigkeit oder einem heterogenen Gemisch, das eine Flüssigkeit enthält oder mit einer Flüssigkeit in Kontakt gebracht wird. Dabei ist vorgesehen, dass (a) die Kunststoffpartikel einem Magnetfeld ausgesetzt werden; (b) an der Oberfläche eines Sammlers Kunststoffpartikel adsorbiert werden; und (c) an der Oberfläche des Sammlers adsorbierte Kunststoffpartikel abgeführt werden.
- Published
- 2020
7. A novel method for the measurement of flotation recovery by means of 4D particle tracking velocimetry
- Author
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Sommer, A.-E., Nikpay, M., Heitkam, S., Rudolph, M., and Eckert, K.
- Subjects
Physics::Fluid Dynamics ,Particle tracking velocimetry ,Collection zone recovery ,Polystyrene flotation ,Bubble-particle interaction - Abstract
This work focuses on the analysis of the collection process in flotation by a simultaneous time-resolved measurement of particle and bubble trajectories. We introduced a new method that determined the probability of collision and attachment by a 3D particle tracking method with high temporal (1000 fps) and spatial (0.03 mm/pixel) resolution in the dense particle flow (5000 particles/ml). A tomographic particle image velocimetry device with three high-speed cameras recorded the three-phase flow in a rectangular bubble column (bubble chain). Particles made of fluorescent polystyrene were employed so that particles appeared bright and bubbles dark on the captured images. An attachment occurred if the trajectory of a particle coincided with that of a bubble. The recovery was calculated based on the number of particles attached to a bubble compared to the total particles density. With this method, the true flotation depending on the particle diameter (30 µm - 100 µm) was investigated and compared the results with an existing model of the bubble-particle collection microprocess.
- Published
- 2018
8. A novel method for the measurement of flotation recovery by means of 4D particle tracking velocimetry
- Author
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(0000-0002-2885-1830) Sommer, A.-E., Nikpay, M., (0000-0002-2493-7629) Heitkam, S., (0000-0002-5374-6135) Rudolph, M., (0000-0002-9671-8628) Eckert, K., (0000-0002-2885-1830) Sommer, A.-E., Nikpay, M., (0000-0002-2493-7629) Heitkam, S., (0000-0002-5374-6135) Rudolph, M., and (0000-0002-9671-8628) Eckert, K.
- Abstract
This work focuses on the analysis of the collection process in flotation by a simultaneous time-resolved measurement of particle and bubble trajectories. We introduced a new method that determined the probability of collision and attachment by a 3D particle tracking method with high temporal (1000 fps) and spatial (0.03 mm/pixel) resolution in the dense particle flow (5000 particles/ml). A tomographic particle image velocimetry device with three high-speed cameras recorded the three-phase flow in a rectangular bubble column (bubble chain). Particles made of fluorescent polystyrene were employed so that particles appeared bright and bubbles dark on the captured images. An attachment occurred if the trajectory of a particle coincided with that of a bubble. The recovery was calculated based on the number of particles attached to a bubble compared to the total particles density. With this method, the true flotation depending on the particle diameter (30 µm - 100 µm) was investigated and compared the results with an existing model of the bubble-particle collection microprocess.
- Published
- 2018
9. Systematic Evaluation of Pleiotropy Identifies 6 Further Loci Associated With Coronary Artery Disease
- Author
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Webb, T.R., Erdmann, J., Stirrups, K.E., Stitziel, N.O., Masca, N.G.D., Jansen, H., Kanoni, S., Nelson, C.P., Ferrario, P.G., Konig, I.R., Eicher, J.D., Johnson, A.D., Hamby, S.E., Betsholtz, C., Ruusalepp, A., Franzen, O., Schadt, E.E., Bjorkegren, J.L.M., Weeke, P.E., Auer, P.L., Schick, U.M., Lu, Y.C., Zhang, H., Dube, M.P., Goel, A., Farrall, M., Peloso, G.M., Won, H.H., R. do, Iperen, E. van, Kruppa, J., Mahajan, A., Scott, R.A., Willenborg, C., Braund, P.S., Capelleveen, J.C. van, Doney, A.S.F., Donnelly, L.A., Asselta, R., Merlini, P.A., Duga, S., Marziliano, N., Denny, J.C., Shaffer, C., El-Mokhtari, N.E., Franke, A., Heilmann, S., Hengstenberg, C., Hoffmann, P., Holmen, O.L., Hveem, K., Jansson, J.H., Jockel, K.H., Kessler, T., Kriebel, J., Laugwitz, K.L., Marouli, E., Martinelli, N., McCarthy, M.I., Zuydam, N.R. van, Meisinger, C., Esko, T., Mihailov, E., Escher, S.A., Alver, M., Moebus, S., Morris, A.D., Virtamo, J., Nikpay, M., Olivieri, O., Provost, S., AlQarawi, A., Robertson, N.R., Akinsansya, K.O., Reilly, D.F., Vogt, T.F., Yin, W., Asselbergs, F.W., Kooperberg, C., Jackson, R.D., Stahl, E., Muller-Nurasyid, M., Strauch, K., Varga, T.V., Waldenberger, M., Zeng, L.Y., Chowdhury, R., Salomaa, V., Ford, I., Jukema, J.W., Amouyel, P., Kontto, J., Nordestgaard, B.G., Ferrieres, J., Saleheen, D., Sattar, N., Surendran, P., Wagner, A., Young, R., Howson, J.M.M., Butterworth, A.S., Danesh, J., Ardissino, D., Bottinger, E.P., Erbel, R., Franks, P.W., Girelli, D., Hall, A.S., Hovingh, G.K., Kastrati, A., Lieb, W., Meitinger, T., Kraus, W.E., Shah, S.H., McPherson, R., Orho-Melander, M., Melander, O., Metspalu, A., Palmer, C.N.A., Peters, A., Rader, D.J., Reilly, M.P., Loos, R.J.F., Reiner, A.P., Roden, D.M., Tardif, J.C., Thompson, J.R., Wareham, N.J., Watkins, H., Willer, C.J., Samani, N.J., Schunkert, H., Deloukas, P., Kathiresan, S., Wellcome Trust Case Control, MORGAM Investigators, and Myocardial Infarction Genetics
- Subjects
expression quantitative trait loci ,single nucleotide polymorphism ,cholesteryl ester transfer protein ,genome-wide association ,genetics - Abstract
BACKGROUND: Genome-wide association studies have so far identified 56 loci associated with risk of coronary artery disease (CAD). Many CAD loci show pleiotropy; that is, they are also associated with other diseases or traits. OBJECTIVES: This study sought to systematically test if genetic variants identified for non-CAD diseases/traits also associate with CAD and to undertake a comprehensive analysis of the extent of pleiotropy of all CAD loci. METHODS: In discovery analyses involving 42,335 CAD cases and 78,240 control subjects we tested the association of 29,383 common (minor allele frequency >5%) single nucleotide polymorphisms available on the exome array, which included a substantial proportion of known or suspected single nucleotide polymorphisms associated with common diseases or traits as of 2011. Suggestive association signals were replicated in an additional 30,533 cases and 42,530 control subjects. To evaluate pleiotropy, we tested CAD loci for association with cardiovascular risk factors (lipid traits, blood pressure phenotypes, body mass index, diabetes, and smoking behavior), as well as with other diseases/traits through interrogation of currently available genome-wide association study catalogs. RESULTS: We identified 6 new loci associated with CAD at genome-wide significance: on 2q37 (KCNJ13-GIGYF2), 6p21 (C2), 11p15 (MRVI1-CTR9), 12q13 (LRP1), 12q24 (SCARB1), and 16q13 (CETP). Risk allele frequencies ranged from 0.15 to 0.86, and odds ratio per copy of the risk allele ranged from 1.04 to 1.09. Of 62 new and known CAD loci, 24 (38.7%) showed statistical association with a traditional cardiovascular risk factor, with some showing multiple associations, and 29 (47%) showed associations at p < 1 × 10(-4) with a range of other diseases/traits. CONCLUSIONS: We identified 6 loci associated with CAD at genome-wide significance. Several CAD loci show substantial pleiotropy, which may help us understand the mechanisms by which these loci affect CAD risk.
- Published
- 2017
10. Diet-resistant obesity is characterized by a distinct plasma proteomic signature and impaired muscle fiber metabolism
- Author
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Thrush, A B, primary, Antoun, G, additional, Nikpay, M, additional, Patten, D A, additional, DeVlugt, C, additional, Mauger, J-F, additional, Beauchamp, B L, additional, Lau, P, additional, Reshke, R, additional, Doucet, É, additional, Imbeault, P, additional, Boushel, R, additional, Gibbings, D, additional, Hager, J, additional, Valsesia, A, additional, Slack, R S, additional, Al-Dirbashi, O Y, additional, Dent, R, additional, McPherson, R, additional, and Harper, M-E, additional
- Published
- 2017
- Full Text
- View/download PDF
11. A novel method for the measurement of flotation recovery by means of 4D particle tracking velocimetry
- Author
-
(0000-0002-2885-1830) Sommer, A.-E., Nikpay, M., (0000-0002-2493-7629) Heitkam, S., (0000-0002-5374-6135) Rudolph, M., (0000-0002-9671-8628) Eckert, K., (0000-0002-2885-1830) Sommer, A.-E., Nikpay, M., (0000-0002-2493-7629) Heitkam, S., (0000-0002-5374-6135) Rudolph, M., and (0000-0002-9671-8628) Eckert, K.
- Abstract
This work focuses on the analysis of the collection process in flotation by a simultaneous time-resolved measurement of particle and bubble trajectories. We introduced a new method that determined the probability of collision and attachment by a 3D particle tracking method with high temporal (1000 fps) and spatial (0.03 mm/pixel) resolution in the dense particle flow (5000 particles/ml). A tomographic particle image velocimetry device with three high-speed cameras recorded the three-phase flow in a rectangular bubble column (bubble chain). Particles made of fluorescent polystyrene were employed so that particles appeared bright and bubbles dark on the captured images. An attachment occurred if the trajectory of a particle coincided with that of a bubble. The recovery was calculated based on the number of particles attached to a bubble compared to the total particles density. With this method, the true flotation depending on the particle diameter (30 µm - 100 µm) was investigated and compared the results with an existing model of the bubble-particle collection microprocess.
- Published
- 2017
12. A Review of Surfactant Role in Soil Clogging Processes at Wastewater Exfiltration Locations in Sewers
- Author
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Nikpay, M., Krebs, P., Ellis, B., Nikpay, M., Krebs, P., and Ellis, B.
- Abstract
Wastewater contains significant sources of pollutants and contaminants. often the failure of a pipe, inadequate sealing or corrupt pipe-connections cause the loss of raw sewage, which percolates into the nearby soil. As a consequence, a colmation layer in conjunction with soil clogging is developing, which regulates the exfiltration rate. Recently, literature has emerged that offers findings about the effects of wastewater surfactants on the change of physical properties of the soil. A survey of published literature in this field provides information highlighting the influential mechanisms of surfactants in soil clogging through physical, chemical and biological processes. Therefore, to provide a comprehensive approach, this review describes the adsorption mechanisms of surfactants on organic and inorganic particles, at gas-bubbles and at biomass. We also provided our own input to the description of the adsorption of surfactants at fluid/fluid and fluid/solid interfaces in porous media associated with the clogging process.
- Published
- 2017
13. A comprehensive 1000 Genomes-based genome-wide association meta-analysis of coronary artery disease
- Author
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Nikpay, M. Goel, A. Won, H.-H. Hall, L.M. Willenborg, C. Kanoni, S. Saleheen, D. Kyriakou, T. Nelson, C.P. CHopewell, J. Webb, T.R. Zeng, L. Dehghan, A. Alver, M. MArmasu, S. Auro, K. Bjonnes, A. Chasman, D.I. Chen, S. Ford, I. Franceschini, N. Gieger, C. Grace, C. Gustafsson, S. Huang, J. Hwang, S.-J. Kim, Y.K. Kleber, M.E. Lau, K.W. Lu, X. Lu, Y. Lyytikäinen, L.-P. Mihailov, E. Morrison, A.C. Pervjakova, N. Qu, L. Rose, L.M. Salfati, E. Saxena, R. Scholz, M. Smith, A.V. Tikkanen, E. Uitterlinden, A. Yang, X. Zhang, W. Zhao, W. De Andrade, M. De Vries, P.S. Van Zuydam, N.R. Anand, S.S. Bertram, L. Beutner, F. Dedoussis, G. Frossard, P. Gauguier, D. Goodall, A.H. Gottesman, O. Haber, M. Han, B.-G. Huang, J. Jalilzadeh, S. Kessler, T. König, I.R. Lannfelt, L. Lieb, W. Lind, L. MLindgren, C. Lokki, M.-L. Magnusson, P.K. Mallick, N.H. Mehra, N. Meitinger, T. Memon, F.-U.-R. Morris, A.P. Nieminen, M.S. Pedersen, N.L. Peters, A. Rallidis, L.S. Rasheed, A. Samuel, M. Shah, S.H. Sinisalo, J. EStirrups, K. Trompet, S. Wang, L. Zaman, K.S. Ardissino, D. Boerwinkle, E. Borecki, I.B. Bottinger, E.P. Buring, J.E. Chambers, J.C. Collins, R. Cupples, L. Danesh, J. Demuth, I. Elosua, R. Epstein, S.E. Esko, T. Feitosa, M.F. Franco, O.H. Franzosi, M.G. Granger, C.B. Gu, D. Gudnason, V. SHall, A. Hamsten, A. Harris, T.B. LHazen, S. Hengstenberg, C. Hofman, A. Ingelsson, E. Iribarren, C. Jukema, J.W. Karhunen, P.J. Kim, B.-J. Kooner, J.S. Kullo, I.J. Lehtimäki, T. Loos, R.J.F. Melander, O. Metspalu, A. März, W. Palmer, C.N. Perola, M. Quertermous, T. Rader, D.J. Ridker, P.M. Ripatti, S. Roberts, R. Salomaa, V. Sanghera, D.K. Schwartz, S.M. Seedorf, U. Stewart, A.F. Stott, D.J. Thiery, J. Zalloua, P.A. O'Donnell, C.J. Reilly, M.P. Assimes, T.L. Thompson, J.R. Erdmann, J. Clarke, R. Watkins, H. Kathiresan, S. McPherson, R. Deloukas, P. Schunkert, H. Samani, N.J. Farrall, M.
- Abstract
Existing knowledge of genetic variants affecting risk of coronary artery disease (CAD) is largely based on genome-wide association study (GWAS) analysis of common SNPs. Leveraging phased haplotypes from the 1000 Genomes Project, we report a GWAS meta-analysis of ∼185,000 CAD cases and controls, interrogating 6.7 million common (minor allele frequency (MAF) > 0.05) and 2.7 million low-frequency (0.005 < MAF < 0.05) variants. In addition to confirming most known CAD-associated loci, we identified ten new loci (eight additive and two recessive) that contain candidate causal genes newly implicating biological processes in vessel walls. We observed intralocus allelic heterogeneity but little evidence of low-frequency variants with larger effects and no evidence of synthetic association. Our analysis provides a comprehensive survey of the fine genetic architecture of CAD, showing that genetic susceptibility to this common disease is largely determined by common SNPs of small effect size. © 2015 Nature America, Inc.
- Published
- 2015
14. Exome Sequencing and Directed Clinical Phenotyping Diagnose Cholesterol Ester Storage Disease Presenting as Autosomal Recessive Hypercholesterolemia
- Author
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Fouchier, S. W., Kooperberg, C., Barnes, T. A., Charnas, L., Martinelli, N., Orho-Melander, M., Lange, L. A., Erdmann, J., Auer, P. L., Schunkert, H., Jackson, R. D., Peloso, G. M., Gabriel, S., Rader, D. J., Girelli, D., Stitziel, N. O., Reilly, M. P., Samani, N. J., Ardissino, D., Duga, S., Nikpay, M., Watkins, H., Moscoso, A. M., Gigante, B., Farrall, M., Goel, A., Sivapalaratnam, S., de Faire, U., Melander, O., Sjouke, B., McPherson, R., and Altshuler, D.
- Subjects
lipids (amino acids, peptides, and proteins) - Abstract
Autosomal recessive hypercholesterolemia (ARH) is a rare inherited disorder characterized by extremely high total and low-density lipoprotein cholesterol levels that has been previously linked to mutations in LDLRAP1. We identified a family with ARH not explained by mutations in LDLRAP1 or other genes known to cause monogenic hypercholesterolemia. The aim of this study was to identify the molecular etiology of ARH in this family.
- Published
- 2013
- Full Text
- View/download PDF
15. Exome sequencing and directed clinical phenotyping diagnose cholesterol ester storage disease presenting as autosomal recessive hypercholesterolemia
- Author
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Stitziel, No, Fouchier, Sw, Sjouke, B, Peloso, Gm, Moscoso, Am, Auer, Pl, Goel, A, Gigante, B, Barnes, Ta, Melander, O, Orho Melander, M, Duga, S, Sivapalaratnam, S, Nikpay, M, Martinelli, Nicola, Girelli, Domenico, Jackson, Rd, Kooperberg, C, Lange, La, Ardissino, D, Mcpherson, R, Farrall, M, Watkins, H, Reilly, Mp, Rader, Dj, de Faire, U, Schunkert, H, Erdmann, J, Samani, Nj, Charnas, L, Altshuler, D, Gabriel, S, Kastelein, Jj, Defesche, Jc, Nederveen, Aj, Kathiresan, S, Hovingh, Gk, National, Heart, Lung, and Blood Institute GO Exome Sequencing Project
- Subjects
autosomal recessive hypercholesterolemia ,autosomal recessive hypercholesterolemia, exome sequencing, LIPA gene mutation ,LIPA gene mutation ,exome sequencing - Published
- 2013
16. Effect of different level of lipids and carbohydrates on growth indices of Benni juvenile (B.sharpeyi)
- Author
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Amiri, Farokh, Bosak Kahkesh, F., Nikpay, M., and Edizadeh, M.
- Subjects
Carbohydrate ,Viscerosomatic ,Feeding ,Protein ,B.sharpeyi ,Dietary ,Hepatosomatic index ,Juvenile ,Aquaculture ,Growth ,Iran ,Lipid ,Body composition ,Barbus sharpeyi ,Weight gain - Abstract
A study was undertaken to determine the effects of various dietary carbohydrate to lipid ratios on growth indices, feed performance and body composition of benni (Barbus sharpeyi) juveniles. Nine iso-nitrogenous (25% crude protein) and iso-caloric (3.5 kcal/g digestible energy) semipurified diets with varying carbohydrate to lipid (CHO L) ratios (0.8 to 8.8 g/g) were tested for 8 weeks with three replicates. Each replicate was stocked with 20 fish (initial mean weight 16.47 ± 0.25 g) that were fed to satiation thrice daily. Twenty seven flow-through fiberglass tanks of 300 L capacity with a flow rate of 1.5 L min-1 were used for rearing the fish. Maximum weight gain (WG), weight gain rate (WGR), specific growth rate (SGR), feed conversion ratio (FCR), feed efficiency ratio (FER), protein efficiency ratio (PER), apparent net protein utilization (ANPU) and fulton,s condition factor (K) were observed in fish fed a 44% carbohydrate and 9% lipid diet, corresponding to a CHO/L ratio of 4.8. Whole body moisture, crude protein and ash content of fish fed varying CHO:L diets did not show any significant differences among treatments (P>0.05), But whole body lipid content of fish decreased (P
- Published
- 2012
17. Correlation between length-weight and age in Barbus sharpeyi and Barbus grypus broodstocks in artificial propagation
- Author
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Bosak Kahkesh, F., Yavari, V., Amiri, F., Makvandi, G.H., and Nikpay, M.
- Subjects
fish ,Fecundity ,Barbus sharpeyi ,Barbus grypus ,weight ,Aquaculture ,Cyprinids ,length ,Iran ,Biology - Abstract
This study was carried out to identify proper broodstock of Barbus sharpeyi and Barbus grypus using working fecundity indices. For Barbus sharpeyi three female groups were chosen based on previous experiences that included treatment 1: 650±300g, 1±0.5 years, (T.L) 40.68±2.7cm, treatment 2: 1350±350g, 2.5±0.5 years, (T.L) 47.92±4.63cm and treatment 3: 2200±400g, 4±0.4 years, and (T.L) 59.62±3.56cm. The same male broodstock (700±80g) and 2 year old fish were used for all treatments. For Barbus grypus three female groups were chosen using previous experiences that included treatment 1: 2212.5±780g, 2.5±0.5 years, (T.L) 62.68±6.7cm, treatment 2: 4518±780g, 4±1 years (T.L) 79.12±4.36cm and treatment 3: 7712.5±171g, 7.7±1.3 years and (T.L) 92.62±3.13cm. The same male broodstock (1400±100g) and 2 year old fish were used for all treatments. Female broodstock of the two species were injected 3mg/kg of PG hormone two times at an interval of 10 hours and males were injected 2mg/kg. The maximum working fecundity was seen in treatment 2 for Barbus sharpeyi (33000±1450) and Barbus grypus and (13000.37±4651.57). Functional fecundity were calculated for Barbus sharpeyi in all treatments which was significantly different between treatment 2 and other treatments for the two species. After this stage, the working fecundity was decreased in treatments. We conclude that treatment 2 is the best for selection of broodstocks in the two fish species.
- Published
- 2012
18. Visualization of surfactant solution transport in saturated soil: an experimental study to represent wastewater loss from sewers
- Author
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Nikpay, M., Lazik, Detlef, Krebs, P., Nikpay, M., Lazik, Detlef, and Krebs, P.
- Abstract
Surfactants are the main active agents in detergents products. Our investigation dealt with the effects of surfactants as a wastewater constituent on the infiltration process of wastewater through saturated soil. In order to more closely observe the flow’s interaction, in a laboratory experiment, a 2D Plexiglas model was filled with fine-grained soil and saturated with degassed water. The particle-free artificial laboratory wastewater was created by adding a commercially available detergent to degassed tap water producing a surfactant concentration with the strength equivalent of up to about 15 times of its critical micelle concentration. The visualization of flow was improved by adding a brilliant blue dye tracer enhancing the color contrast. Photographs were taken from the 2D model using conventional imaging equipment and were processed by image analysis to distinguish the dynamic flow interface between dyed and non-dyed areas. Primarily, the images of vertical flows were analyzed after reducing the contrast range. Next, utilizing an image analysis method, 2D images were reconstructed into 3D visualization models. Three-dimensional and cross-sectional images of the fluid–fluid–soil boundary layer revealed a rapid solute transport prevailing at the dynamic interfaces. This was confirmed with image analysis showing geometric irregularities on the soil surface.
- Published
- 2015
19. Permeability changes by surfactant solution: an experimental study to represent wastewater loss from sewers to saturated soil
- Author
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Nikpay, M., Lazik, Detlef, Krebs, P., Nikpay, M., Lazik, Detlef, and Krebs, P.
- Abstract
Leakage of wastewater from sewer lines may result in contamination of soil and groundwater. The widespread use of detergents is causing relatively high concentrations of surfactants in wastewater. We studied the effects of surfactants on the infiltration process of wastewater through soil. To that aim, in a laboratory experiment three micro-pore glass filters were installed. A laboratory wastewater substitute was created by adding a commercially available detergent to degassed tap water producing surfactant concentrations of 100, 200 and 400 mg l−1. Rapid changes in permeability after using the surfactant solution were detected. These were further examined during a process of washing the glass filters with water. The experimental results indicated that changes in permeability were induced by significant adsorption of surfactant molecules on the solids surfaces and thus reducing the size of the pores. Higher levels of permeability changes were detected for higher surfactant concentrations. Additionally, the efficiency of washing process of an adsorbed surfactant molecular layer at the pore surfaces was greater that before the critical micelle concentration.
- Published
- 2015
20. Cardiometabolic effects of genetic upregulation of the interleukin 1 receptor antagonist: a Mendelian randomisation analysis
- Author
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Freitag, DF, Butterworth, AS, Willeit, P, Howson, JMM, Burgess, S, Kaptoge, S, Young, R, Ho, WK, Wood, AM, Sweeting, M, Spackman, S, Staley, JR, Ramond, A, Harshfield, E, Nielsen, SF, Grande, P, Lange, LA, Bown, MJ, Jones, GT, Scott, RA, Bevan, S, Porcu, E, Thorleifsson, G, Zeng, LY, Kessler, T, Nikpay, M, Do, R, Zhang, WH, Hopewell, JC, Kleber, M, Delgado, GE, Nelson, CP, Goel, A, Bis, JC, Dehghan, Abbas, Ligthart, Symen, Smith, AV, Qu, LM, van 't Hof, FNG, de Bakker, PIW, Baas, AF, van Rij, A, Tromp, G, Kuivaniemi, H, Ritchie, MD, Verma, SS, Crawford, DC, Malinowski, J, de Andrade, M, Kullo, IJ, Peissig, PL, McCarty, CA, Bottinger, EP, Gottesman, O, Crosslin, DR, Carrell, DS, Rasmussen-Torvik, LJ, Pacheco, JA, Huang, J, Timpson, NJ, Kettunen, J, Ala-Korpela, M, Mitchell, GF, Parsa, A, Wilkinson, IB, Gorski, M, Li, Yunlei, Franceschini, N, Keller, MF, Ganesh, SK, Langefeld, CD, Bruijn, L, Brown, MA, Evans, DM, Baltic, S, Ferreira, MA, Baurecht, H, Weidinger, S, Franke, A, Lubitz, SA, Muller-Nurasyid, M, Felix, Janine, Smith, NL, Sudman, M, Thompson, SD, Zeggini, E, Panoutsopoulou, K, Nalls, MA, Singleton, A, Polychronakos, C, Bradfield, JP, Hakonarson, H, Easton, DF, Thompson, D, Tomlinson, IP, Dunlop, M, Hemminki, K, Morgan, G, Eisen, T, Goldschmidt, H, Allan, JM, Henrion, M, Whiffin, N, Wang, YF, Chubb, D, Houlston, RS, Iles, MM, Bishop, DT, Law, MH, Hayward, NK, Luo, Y, Nejentsev, S, Barbalic, M, Crossman, D, Sanna, S, Soranzo, N, Markus, HS, Wareham, NJ, Rader, DJ, O Reilly, M, Assimes, T, Harris, TB, Hofman, Bert, Franco Duran, OH, Gudnason, V, Tracy, R, Psaty, BM, Farrall, M, Watkins, H, Hall, AS, Samani, NJ, Marz, W, Clarke, R, Collins, R, Kooner, JS, Chambers, JC, Kathiresan, S, McPherson, R, Erdmann, J, Kastrati, A, Schunkert, H, Stefansson, K, Thorsteinsdottir, U, Walston, JD, Tybjaerg-Hansen, A, Alam, DS, Majumder, AA, Di Angelantonio, E, Chowdhury, R, Nordestgaard, BG, Saleheen, D, Thompson, SG, Danesh, J, Freitag, DF, Butterworth, AS, Willeit, P, Howson, JMM, Burgess, S, Kaptoge, S, Young, R, Ho, WK, Wood, AM, Sweeting, M, Spackman, S, Staley, JR, Ramond, A, Harshfield, E, Nielsen, SF, Grande, P, Lange, LA, Bown, MJ, Jones, GT, Scott, RA, Bevan, S, Porcu, E, Thorleifsson, G, Zeng, LY, Kessler, T, Nikpay, M, Do, R, Zhang, WH, Hopewell, JC, Kleber, M, Delgado, GE, Nelson, CP, Goel, A, Bis, JC, Dehghan, Abbas, Ligthart, Symen, Smith, AV, Qu, LM, van 't Hof, FNG, de Bakker, PIW, Baas, AF, van Rij, A, Tromp, G, Kuivaniemi, H, Ritchie, MD, Verma, SS, Crawford, DC, Malinowski, J, de Andrade, M, Kullo, IJ, Peissig, PL, McCarty, CA, Bottinger, EP, Gottesman, O, Crosslin, DR, Carrell, DS, Rasmussen-Torvik, LJ, Pacheco, JA, Huang, J, Timpson, NJ, Kettunen, J, Ala-Korpela, M, Mitchell, GF, Parsa, A, Wilkinson, IB, Gorski, M, Li, Yunlei, Franceschini, N, Keller, MF, Ganesh, SK, Langefeld, CD, Bruijn, L, Brown, MA, Evans, DM, Baltic, S, Ferreira, MA, Baurecht, H, Weidinger, S, Franke, A, Lubitz, SA, Muller-Nurasyid, M, Felix, Janine, Smith, NL, Sudman, M, Thompson, SD, Zeggini, E, Panoutsopoulou, K, Nalls, MA, Singleton, A, Polychronakos, C, Bradfield, JP, Hakonarson, H, Easton, DF, Thompson, D, Tomlinson, IP, Dunlop, M, Hemminki, K, Morgan, G, Eisen, T, Goldschmidt, H, Allan, JM, Henrion, M, Whiffin, N, Wang, YF, Chubb, D, Houlston, RS, Iles, MM, Bishop, DT, Law, MH, Hayward, NK, Luo, Y, Nejentsev, S, Barbalic, M, Crossman, D, Sanna, S, Soranzo, N, Markus, HS, Wareham, NJ, Rader, DJ, O Reilly, M, Assimes, T, Harris, TB, Hofman, Bert, Franco Duran, OH, Gudnason, V, Tracy, R, Psaty, BM, Farrall, M, Watkins, H, Hall, AS, Samani, NJ, Marz, W, Clarke, R, Collins, R, Kooner, JS, Chambers, JC, Kathiresan, S, McPherson, R, Erdmann, J, Kastrati, A, Schunkert, H, Stefansson, K, Thorsteinsdottir, U, Walston, JD, Tybjaerg-Hansen, A, Alam, DS, Majumder, AA, Di Angelantonio, E, Chowdhury, R, Nordestgaard, BG, Saleheen, D, Thompson, SG, and Danesh, J
- Abstract
Background To investigate potential cardiovascular and other effects of long-term pharmacological interleukin 1 (IL-1) inhibition, we studied genetic variants that produce inhibition of IL-1, a master regulator of inflammation. Methods We created a genetic score combining the effects of alleles of two common variants (rs6743376 and rs1542176) that are located upstream of IL1RN, the gene encoding the IL-1 receptor antagonist (IL-1Ra; an endogenous inhibitor of both IL-1 alpha and IL-1 beta); both alleles increase soluble IL-1Ra protein concentration. We compared effects on inflammation biomarkers of this genetic score with those of anakinra, the recombinant form of IL-1Ra, which has previously been studied in randomised trials of rheumatoid arthritis and other inflammatory disorders. In primary analyses, we investigated the score in relation to rheumatoid arthritis and four cardiometabolic diseases (type 2 diabetes, coronary heart disease, ischaemic stroke, and abdominal aortic aneurysm; 453 411 total participants). In exploratory analyses, we studied the relation of the score to many disease traits and to 24 other disorders of proposed relevance to IL-1 signalling (746 171 total participants). Findings For each IL1RN minor allele inherited, serum concentrations of IL-1Ra increased by 0.22 SD (95% CI 0.18-0.25; 12.5%; p=9.3 x 10(-33)), concentrations of interleukin 6 decreased by 0.02 SD (-0.04 to -0.01; -1,7%; p=3.5 x 10(-3)), and concentrations of C-reactive protein decreased by 0.03 SD (-0.04 to -0.02; -3.4%; p=7.7 x 10(-14)). We noted the effects of the genetic score on these inflammation biomarkers to be directionally concordant with those of anakinra. The allele count of the genetic score had roughly log-linear, dose-dependent associations with both IL-1Ra concentration and risk of coronary heart disease. For people who carried four IL-1Ra-raising alleles, the odds ratio for coronary heart disease was 1.15 (1.08-1.22; p=1.8 x 10(-6)) compared with people who ca
- Published
- 2015
21. FUNCTIONAL RELATIONSHIP OF THE SMAD3 LOCUS TO CORONARY ARTERY DISEASE (CAD)
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Turner, A., primary, Nikpay, M., additional, Lau, P., additional, Martinuk, A., additional, Soubeyrand, S., additional, and McPherson, R., additional
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- 2015
- Full Text
- View/download PDF
22. Irestigation limnological in Bahmanshir River
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Esmaeili, Fooziyeh, Dehghan Mediseh, S., Sabzalizaheh, S., Kholfeh Nilsaz, M., Mazravi, M., Nikpay, M., and Farokhian, F.
- Subjects
Karoon River ,Salinity ,Bacillariophyceae ,Oligocheate ,Polycheate ,pH ,Persian Gulf ,Hypophthalmichthys molitrix ,Barbus esocinus ,Iran ,Bahmanshir River ,Abadan ,Zooplankton ,Limnological ,Heavy metal ,Limnology ,Phytoplankton ,Dinophycea ,Cyanophycea ,Arvandrood River ,Sampling ,Chlorophycae - Abstract
Bahmanshir River derived from Karoon River and finally connected to Arvandrood that passed from Abadan and then flow into the Persian Gulf. Because of low slope of Bahmanshir River from Ahwaz to Abadan, tidal flow intrusion long distance in Bahmanshir, Arvandrood and Karoon. Sampling from physical and chemical parameters and phytoplankton were done by Nansen sampler, benthic sampling, heavy metals, TOM and grain size sampling were done by grab. Samplings of zooplankton were done by filtering 20 liters water in 100μ mesh size net from middepth of river water. Fish sampling were done by gill net, Trawl net, sobor gill net and stable net with 20, 27, 30, 35, 39, 40 mesh sizes. Physical and Chemical parameters were more similar from station one to four but there were some differences with station five in mouth of river in the sea. Nitrate showed same variations in all studied stations and maximum concentration of nitrite was observed in station five in June and July. The highest value of Total hardness and salinity were observed in station five. The range of pH was 7.2 to 8.5. Cd and Zn were found to be the lowest and the highest concentration in sediments respectively. Annual average following as: Cd < Co < Cu < Pb = Ni < Zn According to ISQGs and river water quality standards, chemical and physical parameters and sediment heavy metals were in acceptable range. Only Cd and Zn values were found higher than acceptable ranges. No significant difference was observed between stations for heavy metal concentrations. In general, 44 phytoplankton species were identified Bacillariophycea (77.74%), Cyanophycea( 10.39%), (Chlorophycae 8.88%) and (Dinophycea 2.99%) were the dominant phytoplankton classes in this study. Shannon index have shown the highest species diversity during one year in January and the lowest was in fourth station. 110 Phytoplankton species composition in Bahmanshir have shown that Bacillariophycea became higher from river to estuary and among zooplanktons Rotifera and Tintinida were the most frequent groups in estuary region with 83% of total abundance. Copepoda, Rotifera and Protozoa (especially Tintinida) were the most frequent zooplankton groups. The highest frequency of zooplankton with 40.6% was observed in the station one in Khoramshahr. 16 macrobenthic groups were identified during the study. Polycheate worms, Isopoda and Oligocheate worms have shown the 83.5%, 5.4% and 3% frequencies respectively. 43 fish species that included in 26 families were identified. Cyprinidae with 12 species and Clupeidae with 2 species were the highest and the lowest species frequencies respectively. Among the identified fish species Hypophthalmichthys molitrix, Barbus esocinus, Crrassius auratus were exotic species and rest of them were local species. Seasonal changes were affected directly by quantitative and qualitative variations in Karoon water and planktonic species composition in estuary region were affected by tidal flow and advances of seawater. Cyprinidae and Barbus geniuses were the most frequent fresh water fish species. Migrant species like Johnius dussumeieri, Acanthophagus latus, Hilsa ilisha were captured in most stations and months, presence of these species is important for reproduction. Fish species of this river have different diet that included soft sediments, planktons, benthos, macroscopic plants, small fishes and shrimps.
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- 2009
23. Effect of protein and energy levels of diet on the growth parameters of shirbot (Barbus grypus )in the grow out stage
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Bosak kahkesh, Foroud, Eskandari, Gh., Nikpay, M., Amiri, F., Gholami, R., and Edizadeh, M.
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Energy ,Protein ,Parameters ,Grow out stage ,Ash ,Growth ,Body weight ,Barbus Grypus ,Biochemical ,Fingerling ,Diet - Abstract
This study was done is two phases, to determine required suitable level of protein and energy for Barbus grypus to get maximum growth to market size. Phase 1-finger ling phase Treatments with triplicate in different level of protein (25, 30, 35 percentage) and different level of digestible energy (kcal/100 gr 250,300,350) were used. Also the effect of mentioned diets on fish growth by calculating (WG, FER, FCR, SVR, PER, SGR) was studied. 9 treatments with triplicate random group of 15 fish per 300 liter tank the mean of were stuclied for 60 days. Body weight was (29.68±0.19gr). The results showed that in constant protein levels growth parameters improved to a special level with in Creasing energy level but in constant. Protein decrease with in crase in energy level. The result of caracass showed energy, protein, fiber and lipid caracass increased with increase in protein and energy, ash level of diet, on the other hand the mentioned diets had meaningfull effect on biochemical composition of caracass except (protein and ash). The best protein level was (%30) and suitable energy level was (250 Kcal/100gr). Phase 2: Grow out stage The best diets (P30%) and (250Kcal/100gr) and (p350%),(300kcal/100gr),(p35%)(350Kcal/100gr)was determind of second phase. These three suitable diets 3 treament in a soil pond 160m² with primary weight 98.3±23 in 60 day. Siqnificant different bet ween treatments were obsereved based on WG,FER,FCR,SVR,PER,SGR Indices. There were no Siqnificant different in (fish body composition)in second phases of experiment. The level of energy,protein,fiber and lipid. In fishes body were increased with in increasing the diet protein. Finally, according to mean valves,30% protein level and (250 Kcal/100gr) energy for barbus grypus are suggestedias the best levels. Iranian Fisheries Science Research Institute Published
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- 2009
24. Determination of feeding Benni (Barbus sharpyie)(First Phase : Hole Body Analysis and some Biolayical Characteriestis)
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Sharifian, Mansour, Nikpay, M., Mortazavizadeh, A., and Amiri, F.
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Barbus sharpeyi ,Feeding ,Body analysis ,Biological - Abstract
In order to determination of feeding requierments, in first step hole bady analysis and some biological characteriestis of Barbus sharpyie was investigated in khouzestan provience in 2001-2004. In this study 413 benni (Barbus sharpyie) in length size range (30 to 440 mm) were caught from different resources in region (mainly Shadegan and Horalazim wet lands) Fishes were classified in different length groups for carcasse analysis, The highest protein was observed in (30 to 95 mm) and (100-140 mm) length size groups, and also the rate of protein decrease with Length increase The lowest lipid (body fat) rate was observed in (100-149 mm) length size group and also with decreasing the protein in length groups, lipid was increased in Benni (Barbus sharpeyi) body. The maximum rate of body ash was measured in (30-95 mm) length size group, after this with increasing of the length, the rate of ash decreased gradually, so the minimum ash rate was observed in (30-440 mm) length zise group. Phas phorous and calcium variations were the same as ash changing the maximum energy was obtained in (250-350 mm). That was in harmony with increasing in this length groupe. Falty acids in Benni bady were higher then X-3 and were similar to falty acids profiles in carp fishes bady Benni protain in cludes Essential amino acids, Arginine, Histidine, Iucine, Methionine, Valine, Phenylalanine, theronine, Lysine, that were the same in different individual. Regarding length weight relation. Benni growth is Allometric and regarding stomach contents and increasing of gut length Index in different length size groups, its feeding habits is herbivorous . Iranian Fisheries Science Research Institute Published
- Published
- 2005
25. Determination of density of bennifish (Barbus sharpeyi) in polyculture system
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Bossak Kahkesh, Foroud, Nikpay, M., Tamjidy, B., Farrokhian, F., and Amiri, F.
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Polyculture ,Barbus sharpeyi ,Density ,Determination ,Bennifish - Abstract
Determination of suitable density of Barbus sharpeyi in polyculture system. This study was carrid at in shaban fisheries research station in Khozestan provience, During 6 month from way to Nov. This research was done in nine ponds with 1720m area in 3 treatments and 3 repeatition for each by use of random statistic Analysis. Barbus sharpeyi was reared with chinese carp (Amor, Bighead and siluer carp) and common carp, in polycoture to obtain the best density for B. sharpeyi. Treatments include : polyculture as controp treatment 1, polyculture plus 150 B. sharpei and 2 polyculture plus 300 B. sharpei. In all treatmonts the ratios of food, or qanic and inorganic pertilizer were the same. In two treatments (1 and 2), in which B. sharpei was added to system, only food was added to compare with control treatment. Hygien and disease control was done by priority of prevention. Acording to physical and chemical paramaters the ponds water were suitable. Sorvival rate in all treatments was 95 percent. Anova showed no signipicant different in fish production between 3 treatments (P= %5). Average of production in 3 treatments was 4946, 5979/3, 5082/3 kg/ha respectinely Groos in come in hectar there was no significant difference in gross income in hectare except for B. sharpei species. So in treatment 1 and 2 we obsereved in come increasing. Mean prices of one kg in No 1 and 2 treatment was different from control treatment. In net and Gross in come (which is the most important factor for choosing this method), significant difference was observed only between No 1 treatment and control treatment. Specific growth rate was significant only in treatment No 1. But condition factor showed no significant differences in non of them (species). So No 1 treatment composition had better result than others. Iranian Fisheries Science Research Institute Published
- Published
- 2005
26. The reproduction biology of Barbus esocinus in Dez dam reservoir
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Eskandari, Gh., Dehgan, S., and Nikpay, M.
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Reproduction ,Khouzestan Province ,Barbus esocinus ,Fisheries ,Dez dam ,Dez dam reservoir ,Iran ,Biology - Abstract
This study was carried out from April 1999 to March 2000 in Dez dam reservoir located at North Khouzestan province. From the total number of 607 specimen of collected fish, 267 and 64 were males and females respectively, and276 specimen were immature. Samples were caught by hooks and gill nets. Length range of females was 156-1350 mm and their weight range was 31.7-26500 g. Males ranged 183-1065mm in length and 48-12208g in weight. The males showed more ranges in length and weight comparing to females. The spawning period is very short and occurring in spring after flooding of the river and increase in the reservoir water level. This species is a total spawner and eggs are release in upstream regions and reservoir shallow waters on bottoms gravels. Spawning occurs in 24°C. Fecundity was intermediate. Sex ratio was 4.2:1.0 (male/female). Males show a faster maturation. According to the ratio of gut length to the body length, it seems to be an omnivorous species, but all samples were found to have fish in their stomachs (100%). Feeding intensity was higher in males. Annual growth is slow and asymptomatic length is more than 2m. Relative growth in weight is not in accordance with growth in length for various length groups, and relative growth in weight is increased with increasing of fish length. Growth of this species is positive allometric type. Various length groups were observed in examined specimens. It I seems that it has a longer reproductive life comparing to its pre-maturation life. Relative fatness is higher in females.
- Published
- 2004
27. Water displacement by surfactant solution: an experimental study to represent wastewater loss from sewers to saturated soil
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Nikpay, M., Lazik, Detlef, Krebs, P., Nikpay, M., Lazik, Detlef, and Krebs, P.
- Abstract
Leakage of wastewater from sewer lines may result in contamination of soil and groundwater. Our investigation dealt with the effects of surfactant as one of the constituents of wastewater on the infiltration process of wastewater through soil. To that aim, in a laboratory experiment, a column was uniformly packed with glass beads of 0.25–0.50 mm diameter and equipped with sensors to measure local fluid pressure at three observation points along the direction of flow. The artificial laboratory wastewater was created by adding a commercially available detergent to degassed tap water producing surfactant concentrations between 8 and 16 mg l−1. The displacement process of degassed tap water by such a particle-free artificial wastewater was studied by loading the surfactant solution into the saturated glass beads column. Short-term pressure changes were observed while the interface between water and surfactant solution passed the observation points within the column. The pressure peaks increased for higher surfactant concentrations. The theory of growing interface between surfactant solution and clean water by aggregation of monomers to a double layer could be supported by the column experiments.
- Published
- 2014
28. ADIPOSITY SIGNIFICANTLY MODIFIES GENETIC RISK FOR DYSLIPIDEMIA
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Cole, CC, primary, Nikpay, M, additional, Lau, P, additional, Stewart, AFR, additional, Davies, RW, additional, Wells, GA, additional, Dent, R, additional, and McPherson, R, additional
- Published
- 2014
- Full Text
- View/download PDF
29. Water displacement by surfactant solution: an experimental study to represent wastewater loss from sewers to saturated soil
- Author
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Nikpay, M., primary, Lazik, D., additional, and Krebs, P., additional
- Published
- 2014
- Full Text
- View/download PDF
30. Limnological study and fisheries potential in Karkheh reservoir
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Khalefeh Nilsaz, Mansour, Mazreavi, M., Esmaeli, F., and Nikpay, M.
- Subjects
Limnological ,Phytoplankton - Abstract
This study was carried out in Karkheh reservoir in North of Khuzestan Province from January to December 2003.Monthly sampling was done from 3 stations in lake with different depth and also 2 stations in input and out put points of reservoir in Karkheh river. Average volume and surface of reservoir were 2870 milioncubic and 10427 hectares respectively. Mean depth in stations 2, 3 and 4 were 36.07, 53.42 and 31.71 meter respectively. The DO content was recorded as optimum level, the highest Nitrite, TDS and TSS were observed in 20 meter depth layer. The ranges of nutrients were: Nitrate (1.2-31.8), Phosphate (0.01-2.11), and Silicate (2.1-18.7) mg/liter.EC and pH range were 599- 1629µs/cm and 7.42-8.78 respectively. The amount of ammonia and co2 were very little during the year.BOD5 was below 5 mg/liter, that is indicator of clear waters. Dam water was classified in hard to very hard water group. Other factors of water were in acceptable range. The most frequent occurrence of phytoplankton classes were: cyanophyceae (72.04%), Bacillariophyceae (12.39%), Dinophyceae (10.46%), Chlorophyceae (4.88%) and Chrysophyceae (0.22%).The most frequent genuses of each group phytoplankton was chroococcus, cyclotella, Melosira XPeridinium XScenedesmus X Gelocapsa. Cyanophyceae was in surface and 20meter depth and other classes only in 20 meter depth observed. The most abundant of zooplankton group were Copepoda (44.8%), Protozoa (27.32%), Rotifera (22.45%) and Cladocera (5.43%) and genuses including are Cyclops, Tintinopsis, Keratella, Brachionus and Daphnia were abundant. Protozoa in 20, Cladocera in 20 and 40 and Copepoda in 60 meter depth were more abundant. The chlorophyll a in stations 3, 4 was higher than stations 2. The mean and total primary production were 0.33, 93.44 gc/m2/day respectively. The highest abundant benthic group were: Oligocheta (74%), Ephemeroptera (13%) ( Chironomidae (5%) and others (8%).The most and the lowest abundant macro benthic were observed in February and October. The Lowest density of benthic fauna was found in the deepest stations 3. station 4 was showed the lowest amount of silty-clay ,but the most organic matter was found in station 3.Identified nektons were include: 18 species from 6 families: cyprinidae (13 sp.), mugilidae (1 sp.), mastacembelidae (1 sp.), Sisoridae (1 sp.), Graspidae (1 sp.), bagridae (1 sp.).The most abundant fishes were: Capota trutta (25.4%), Cyprinion macrostmum (18.3%), Barbus esocinus (15.4%) and others species (40.9%). Potential of Fish production based on primary production was measured about 102.7 kg/Hectares in year. Trophic State Index (TSI) was 16.06, that indicator of oligothrophic waters. Iranian Fisheries Science Research Institute Published
- Published
- 2003
31. Diet-resistant obesity is characterized by a distinct plasma proteomic signature and impaired muscle fiber metabolism
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Thrush, A B, Antoun, G, Nikpay, M, Patten, D A, DeVlugt, C, Mauger, J-F, Beauchamp, B L, Lau, P, Reshke, R, Doucet, É, Imbeault, P, Boushel, R, Gibbings, D, Hager, J, Valsesia, A, Slack, R S, Al-Dirbashi, O Y, Dent, R, McPherson, R, and Harper, M-E
- Abstract
Background/Objectives:Inter-individual variability in weight loss during obesity treatment is complex and poorly understood. Here we use whole body and tissue approaches to investigate fuel oxidation characteristics in skeletal muscle fibers, cells and distinct circulating protein biomarkers before and after a high fat meal (HFM) challenge in those who lost the most (obese diet-sensitive; ODS) vs the least (obese diet-resistant; ODR) amount of weight in a highly controlled weight management program.Subjects/Methods:In 20 weight stable-matched ODS and ODR women who previously completed a standardized clinical weight loss program, we analyzed whole-body energetics and metabolic parameters in vastus lateralis biopsies and plasma samples that were obtained in the fasting state and 6?h after a defined HFM, equivalent to 35% of total daily energy requirements.Results:At baseline (fasting) and post-HFM, muscle fatty acid oxidation and maximal oxidative phosphorylation were significantly greater in ODS vs ODR, as was reactive oxygen species emission. Plasma proteomics of 1130 proteins pre and 1, 2, 5 and 6?h after the HFM demonstrated distinct group and interaction differences. Group differences identified S-formyl glutathione hydratase, heat shock 70?kDA protein 1A/B (HSP72), and eukaryotic translation initiation factor 5 (eIF5) to be higher in ODS vs ODR. Group-time differences included aryl hydrocarbon interacting protein (AIP), peptidylpropyl isomerase D (PPID) and tyrosine protein-kinase Fgr, which increased in ODR vs ODS over time. HSP72 levels correlated with muscle oxidation and citrate synthase activity. These proteins circulate in exosomes; exosomes isolated from ODS plasma increased resting, leak and maximal respiration rates in C2C12 myotubes by 58%, 21% and 51%, respectively, vs those isolated from ODR plasma.Conclusions:Findings demonstrate distinct muscle metabolism and plasma proteomics in fasting and post-HFM states corresponding in diet-sensitive vs diet-resistant obese women.
- Published
- 2018
- Full Text
- View/download PDF
32. Identification of some freshwater fish of Khuzestan province, 1373-1374
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Najafpour, N., Almokhtar, M., Nikpay, M., Eskandari, Gh.R., Miahi, Y., and Shakiba, Gh.H.
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Identification ,Freshwater ,Fish - Abstract
Iranian Fisheries Science Research Institute Published
- Published
- 1997
33. Survey of Barbus grypus and Barbus sharpeyi
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Nikpay, M., Dehghan, S., Esmaeili, F., and Marashi, S.Z.
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Fish ,Barbus sharpeyi ,Barbus grypus ,Survey - Abstract
Iranian Fisheries Science Research Institute Published
- Published
- 1996
34. Systematic evaluation of pleiotropy identifies 6 further loci associated with coronary artery disease
- Author
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Webb, T, Erdmann, J, Stirrups, K, Stitziel, N, Masca, N, Jansen, H, Kanoni, S, Nelson, C, Ferrario, P, König, I, Eicher, J, Johnson, A, Hamby, S, Betsholtz, C, Ruusalepp, A, Franzén, O, Schadt, E, Björkegren, J, Weeke, P, Auer, P, Schick, U, Lu, Y, Zhang, H, Dube, M, Goel, A, Farrall, M, Peloso, G, Won, H, Do, R, van Iperen, E, Kruppa, J, Mahajan, A, Scott, R, Willenborg, C, Braund, P, van Capelleveen, J, Doney, A, Donnelly, L, Asselta, R, Merlini, P, Duga, S, Marziliano, N, Denny, J, Shaffer, C, El-Mokhtari, N, Franke, A, Heilmann, S, Hengstenberg, C, Hoffmann, P, Holmen, O, Hveem, K, Jansson, J, Jöckel, K, Kessler, T, Kriebel, J, Laugwitz, K, Marouli, E, Martinelli, N, McCarthy, M, Van Zuydam, N, Meisinger, C, Esko, T, Mihailov, E, Escher, S, Alver, M, Moebus, S, Morris, A, Virtamo, J, Nikpay, M, Olivieri, O, Provost, S, AlQarawi, A, Robertson, N, Akinsansya, K, Reilly, D, Vogt, T, Yin, W, Asselbergs, F, Kooperberg, C, Jackson, R, Stahl, E, Müller-Nurasyid, M, Strauch, K, Varga, T, Waldenberger, M, Consortium, Wellcome Trust Case Control, Zeng, L, Chowdhury, R, Salomaa, V, Ford, I, Jukema, J, Amouyel, P, Kontto, J, Investigators, MORGAM, Nordestgaard, B, Ferrières, J, Saleheen, D, Sattar, N, Surendran, P, Wagner, A, Young, R, Howson, J, Butterworth, A, Danesh, J, Ardissino, D, Bottinger, E, Erbel, R, Franks, P, Girelli, D, Hall, A, Hovingh, G, Kastrati, A, Lieb, W, Meitinger, T, Kraus, W, Shah, S, McPherson, R, Orho-Melander, M, Melander, O, Metspalu, A, Palmer, C, Peters, A, Rader, D, Reilly, M, Loos, R, Reiner, A, Roden, D, Tardif, J, Thompson, J, Wareham, N, Watkins, H, Willer, C, Samani, N, Schunkert, H, Deloukas, P, Kathiresan, S, Investigators, Myocardial Infarction Genetics and CARDIoGRAM Exome Consortia, Johnson, Kathleen [0000-0002-6823-3252], Chowdhury, Rajiv [0000-0003-4881-5690], Surendran, Praveen [0000-0002-4911-6077], Howson, Joanna [0000-0001-7618-0050], Butterworth, Adam [0000-0002-6915-9015], Danesh, John [0000-0003-1158-6791], Wareham, Nicholas [0000-0003-1422-2993], and Apollo - University of Cambridge Repository
- Subjects
expression quantitative trait loci ,single nucleotide polymorphism ,cholesteryl ester transfer protein ,genome-wide association ,genetics - Abstract
BACKGROUND: Genome-wide association studies have so far identified 56 loci associated with risk of coronary artery disease (CAD). Many CAD loci show pleiotropy; that is, they are also associated with other diseases or traits. OBJECTIVES: This study sought to systematically test if genetic variants identified for non-CAD diseases/traits also associate with CAD and to undertake a comprehensive analysis of the extent of pleiotropy of all CAD loci. METHODS: In discovery analyses involving 42,335 CAD cases and 78,240 control subjects we tested the association of 29,383 common (minor allele frequency >5%) single nucleotide polymorphisms available on the exome array, which included a substantial proportion of known or suspected single nucleotide polymorphisms associated with common diseases or traits as of 2011. Suggestive association signals were replicated in an additional 30,533 cases and 42,530 control subjects. To evaluate pleiotropy, we tested CAD loci for association with cardiovascular risk factors (lipid traits, blood pressure phenotypes, body mass index, diabetes, and smoking behavior), as well as with other diseases/traits through interrogation of currently available genome-wide association study catalogs. RESULTS: We identified 6 new loci associated with CAD at genome-wide significance: on 2q37 (KCNJ13-GIGYF2), 6p21 (C2), 11p15 (MRVI1-CTR9), 12q13 (LRP1), 12q24 (SCARB1), and 16q13 (CETP). Risk allele frequencies ranged from 0.15 to 0.86, and odds ratio per copy of the risk allele ranged from 1.04 to 1.09. Of 62 new and known CAD loci, 24 (38.7%) showed statistical association with a traditional cardiovascular risk factor, with some showing multiple associations, and 29 (47%) showed associations at p < 1 × 10(-4) with a range of other diseases/traits. CONCLUSIONS: We identified 6 loci associated with CAD at genome-wide significance. Several CAD loci show substantial pleiotropy, which may help us understand the mechanisms by which these loci affect CAD risk.
35. Long Noncoding RNA TRIBAL Links the 8q24.13 Locus to Hepatic Lipid Metabolism and Coronary Artery Disease.
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Soubeyrand S, Lau P, Nikpay M, Ma L, Bjorkegren JLM, and McPherson R
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- Humans, Liver metabolism, Genome-Wide Association Study, Mendelian Randomization Analysis, Intracellular Signaling Peptides and Proteins genetics, Intracellular Signaling Peptides and Proteins metabolism, Triglycerides blood, Triglycerides metabolism, Hepatocytes metabolism, Protein Serine-Threonine Kinases genetics, Protein Serine-Threonine Kinases metabolism, Protein Serine-Threonine Kinases antagonists & inhibitors, Fatty Liver genetics, Fatty Liver metabolism, Coronary Artery Disease genetics, Coronary Artery Disease metabolism, RNA, Long Noncoding genetics, RNA, Long Noncoding metabolism, Lipid Metabolism genetics, Chromosomes, Human, Pair 8 genetics, Quantitative Trait Loci
- Abstract
Background: Genome-wide association studies identified a 20-Kb region of chromosome 8 (8q24.13) associated with plasma lipids, hepatic steatosis, and risk for coronary artery disease. The region is proximal to TRIB1 , and given its well-established role in lipid regulation in animal models, TRIB1 has been proposed to mediate the contribution of the 8q24.13 locus to these traits. This region overlaps a gene encoding the primate-specific long noncoding RNA transcript TRIBAL / TRIB1AL ( TRIB1 -associated locus), but the contribution of TRIBAL to coronary artery disease risk remains untested., Methods: Using recently available expression quantitative trait loci data and hepatocyte models, we further investigated this locus by Mendelian randomization analysis. Following antisense oligonucleotide targeting of TRIBAL, transcription array, quantitative reverse transcription polymerase chain reaction, and enrichment analyses were performed and effects on apoB and triglyceride secretion were determined., Results: Mendelian randomization analysis supports a causal relationship between genetically determined hepatic TRIBAL expression and markers of hepatic steatosis and coronary artery disease risk. By contrast, expression data sets did not support expression quantitative trait loci relationships between coronary artery disease-associated variants and TRIB1 . TRIBAL suppression reduced the expression of key regulators of triglyceride metabolism and bile acid synthesis. Enrichment analyses identified patterns consistent with impaired metabolic functions, including reduced triglyceride and cholesterol handling ability. Furthermore, TRIBAL suppression was associated with reduced hepatocyte secretion of triglycerides., Conclusions: This work identifies TRIBAL as a gene bridging the genotype-phenotype relationship at the 8q24.13 locus with effects on genes regulating hepatocyte lipid metabolism and triglyceride secretion., Competing Interests: None.
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- 2024
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36. Multiomics Screening Identified CpG Sites and Genes That Mediate the Impact of Exposure to Environmental Chemicals on Cardiometabolic Traits.
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Nikpay M
- Abstract
An understanding of the molecular mechanism whereby an environmental chemical causes a disease is important for the purposes of future applications. In this study, a multiomics workflow was designed to combine several publicly available datasets in order to identify CpG sites and genes that mediate the impact of exposure to environmental chemicals on cardiometabolic traits. Organophosphate and prenatal lead exposure were previously reported to change methylation level at the cg23627948 site. The outcome of the analyses conducted in this study revealed that, as the cg23627948 site becomes methylated, the expression of the GNA12 gene decreases, which leads to a higher body fat percentage. Prenatal perfluorooctane sulfonate exposure was reported to increase the methylation level at the cg21153102 site. Findings of this study revealed that higher methylation at this site contributes to higher diastolic blood pressure by changing the expression of CHP1 and GCHFR genes. Moreover, HKR1 mediates the impact of B12 supplementation → cg05280698 hypermethylation on higher kidney function, while CTDNEP1 mediates the impact of air pollution → cg03186999 hypomethylation on higher systolic blood pressure. This study investigates CpG sites and genes that mediate the impact of environmental chemicals on cardiometabolic traits. Furthermore, the multiomics approach described in this study provides a convenient workflow with which to investigate the impact of an environmental factor on the body's biomarkers, and, consequently, on health conditions, using publicly available data.
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- 2024
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37. Multiomics Data Analysis Identified CpG Sites That Mediate the Impact of Smoking on Cardiometabolic Traits.
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Nikpay M
- Abstract
Understanding the epigenome paths through which smoking contributes to cardiometabolic traits is important for downstream applications. In this study, an SNP-based analytical pipeline was used to integrate several publicly available datasets in order to identify CpG sites that mediate the impact of smoking on cardiometabolic traits and to investigate the underlying molecular mechanisms. After applying stringent statistical criteria, 11 CpG sites were detected that showed significant association ( p < 5 × 10
-8 ) with cardiometabolic traits at both the discovery and replication stages. By integrating eQTL data, I found genes behind a number of these associations. cg05228408 was hypomethylated in smokers and contributed to higher blood pressure by lowering the expression of the CLCN6 gene. cg08639339 was hypermethylated in smokers and lowered the metabolic rate by increasing the expression of RAB29 ; furthermore, I noted TMEM120A mediated the impact of smoking-cg17325771 on LDL, and LTBP3 mediated the smoking-cg07029024 effect on heart rate. The pathway analysis identified processes through which the identified genes impact their traits. This study provides a list of CpG sites that mediates the impact of smoking on cardiometabolic traits and a framework to investigate the underlying molecular paths using publicly available data.- Published
- 2023
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38. Genome-wide search identified DNA methylation sites that regulate the metabolome.
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Nikpay M
- Abstract
Background: Identifying DNA methylation sites that regulate the metabolome is important for several purposes. In this study, publicly available GWAS data were integrated to find methylation sites that impact metabolome through a discovery and replication scheme and by using Mendelian randomization. Results: The outcome of analyses revealed 107 methylation sites associated with 84 metabolites at the genome-wide significance level ( p <5e
-8 ) at both the discovery and replication stages. A large percentage of the observed associations (85%) were with lipids, significantly higher than expected ( p = 0.0003). A number of CpG (methylation) sites showed specificity e.g., cg20133200 within PFKP was associated with glucose only and cg10760299 within GATM impacted the level of creatinine; in contrast, there were sites associated with numerous metabolites e.g., cg20102877 on the 2p23.3 region was associated with 39 metabolites. Integrating transcriptome data enabled identifying genes (N = 82) mediating the impact of methylation sites on the metabolome and cardiometabolic traits. For example, PABPC4 mediated the impact of cg15123755-HDL on type-2 diabetes. KCNK7 mediated the impact of cg21033440-lipids on hypertension. POC5, ILRUN, FDFT1, and NEIL2 mediated the impact of CpG sites on obesity through metabolic pathways. Conclusion: This study provides a catalog of DNA methylation sites that regulate the metabolome for downstream applications., Competing Interests: The author declares that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2023 Nikpay.)- Published
- 2023
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39. Genome-wide screening identifies DNA methylation sites that regulate the blood proteome.
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Nikpay M, Ravati S, and McPherson R
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Background: Identifying DNA methylation sites that regulate the blood proteome is important for biomedical purposes. Materials & methods: Here the authors performed a genome-wide search to find DNA methylation sites that impact proteins. Results: The authors identified 165 methylation sites associated with 138 proteins. The authors noted hotspot genomic regions that control the levels of several proteins. For example, methylation of the ABO locus impacted 37 proteins and contributed to cardiometabolic comorbidities, including the severity of SARS-CoV-2 infection. The authors made these findings publicly available as a Unix software that identifies methylation sites that cause disease and reveals the underlying proteins. The authors underlined the software application by showing that components of innate immunity contribute to systolic blood pressure. Conclusion: This study provides a catalog of DNA methylation sites that regulate the proteome, and the results are available as freeware for biological insight.
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- 2022
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40. Genetically Determined Reproductive Aging and Coronary Heart Disease: A Bidirectional 2-sample Mendelian Randomization.
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Dam V, Onland-Moret NC, Burgess S, Chirlaque MD, Peters SAE, Schuit E, Tikk K, Weiderpass E, Oliver-Williams C, Wood AM, Tjønneland A, Dahm CC, Overvad K, Boutron-Ruault MC, Schulze MB, Trichopoulou A, Ferrari P, Masala G, Krogh V, Tumino R, Matullo G, Panico S, Boer JMA, Verschuren WMM, Waaseth M, Pérez MJS, Amiano P, Imaz L, Moreno-Iribas C, Melander O, Harlid S, Nordendahl M, Wennberg P, Key TJ, Riboli E, Santiuste C, Kaaks R, Katzke V, Langenberg C, Wareham NJ, Schunkert H, Erdmann J, Willenborg C, Hengstenberg C, Kleber ME, Delgado G, März W, Kanoni S, Dedoussis G, Deloukas P, Nikpay M, McPherson R, Scholz M, Teren A, Butterworth AS, and van der Schouw YT
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- Aging genetics, Female, Humans, Male, Mendelian Randomization Analysis, Polymorphism, Single Nucleotide, Coronary Disease epidemiology, Coronary Disease genetics, Genome-Wide Association Study methods
- Abstract
Background: Accelerated reproductive aging, in women indicated by early natural menopause, is associated with increased coronary heart disease (CHD) risk in observational studies. Conversely, an adverse CHD risk profile has been suggested to accelerate menopause., Objectives: To study the direction and evidence for causality of the relationship between reproductive aging and (non-)fatal CHD and CHD risk factors in a bidirectional Mendelian randomization (MR) approach, using age at natural menopause (ANM) genetic variants as a measure for genetically determined reproductive aging in women. We also studied the association of these variants with CHD risk (factors) in men., Design: Two-sample MR, using both cohort data as well as summary statistics, with 4 methods: simple and weighted median-based, standard inverse-variance weighted (IVW) regression, and MR-Egger regression., Participants: Data from EPIC-CVD and summary statistics from UK Biobank and publicly available genome-wide association studies were pooled for the different analyses., Main Outcome Measures: CHD, CHD risk factors, and ANM., Results: Across different methods of MR, no association was found between genetically determined reproductive aging and CHD risk in women (relative risk estimateIVW = 0.99; 95% confidence interval (CI), 0.97-1.01), or any of the CHD risk factors. Similarly, no associations were found in men. Neither did the reversed analyses show evidence for an association between CHD (risk factors) and reproductive aging., Conclusion: Genetically determined reproductive aging is not causally associated with CHD risk (factors) in women, nor were the genetic variants associated in men. We found no evidence for a reverse association in a combined sample of women and men., (© The Author(s) 2022. Published by Oxford University Press on behalf of the Endocrine Society.)
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- 2022
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41. Does the Presence of Type 2 Diabetes or Metabolic Syndrome Impact Reduction in Waist Circumference During Weight Loss?
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Chi X, Bielawska B, Nikpay M, and Dent R
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- Body Mass Index, Female, Humans, Male, Waist Circumference, Weight Loss, Diabetes Mellitus, Type 2 epidemiology, Metabolic Syndrome epidemiology
- Abstract
Objectives: Our aim in this study was to compare the change in waist circumference given the same degree of weight loss in patients who meet the criteria for metabolic syndrome or type 2 diabetes and those who do not meet these criteria. Because visceral adiposity is a key feature of both conditions and intra-abdominal adipocytes show higher lipolytic activity, we sought to determine whether changes in waist circumference differed in individuals with and without these conditions., Methods: The Ottawa Hospital Weight Management Clinic offers a course in lifestyle modification and uses 12 weeks of total meal replacement. We compared the decrease in waist circumference between patients with metabolic syndrome or diabetes and those without these conditions who had lost a similar amount of weight using measurements from the first 6 weeks of meal replacement., Results: We evaluated 3,559 patients who attended the program between September 1992 and April 2015. The patient population was largely Caucasian and of European descent and all meetings were face to face. The mean weight loss for men was 15.1±20.2 kg, and the mean weight loss for women was 9.7±2.4 kg. There were no significant differences in decrease in waist circumference between those with and without metabolic syndrome in both men (11.7±3.9 cm vs 11.4±3.8 cm, p=0.48) and women (9.0±3.6 cm vs 9.1±3.7 cm, p=0.26)., Conclusions: Our results show that, given the same degree of weight loss, patients with and without diabetes or metabolic syndrome experience a similar change in waist circumference., (Crown Copyright © 2021. Published by Elsevier Inc. All rights reserved.)
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- 2022
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42. Common Polymorphism That Protects From Cardiovascular Disease Increases Fibronectin Processing and Secretion.
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Soubeyrand S, Lau P, Nikpay M, Dang AT, and McPherson R
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- Fibronectins genetics, Genome-Wide Association Study, Humans, Protein Sorting Signals genetics, Cardiovascular Diseases genetics, Coronary Artery Disease genetics
- Abstract
Background: Fibronectin ( FN1 ) is an essential regulator of homodynamic processes and tissue remodeling that have been proposed to contribute to atherosclerosis. Moreover, recent large-scale genome-wide association studies (GWAS) have linked common genetic variants within the FN1 gene to coronary artery disease risk., Methods: Public databases were analyzed by 2-Sample Mendelian Randomization. Expression constructs encoding short FN1 reporter constructs and full-length plasma FN1 variants were introduced in various cell models. Secreted and cellular levels were then analyzed and quantified by SDS-PAGE and fluorescence microscopy. Mass spectrometry and glycosylation analyses were performed to probe possible posttranscriptional differences., Results: Bioinformatic analyses revealed that common coronary artery disease risk single nucleotide polymorphisms in the FN1 locus associate with circulating levels of FN1 and that higher FN1 (fibronectin 1) protein levels in plasma are linked to lower coronary artery disease risk. The coronary artery disease-associated FN1 locus encompasses a common polymorphism that translates a L15Q variant situated within the FN1 signal peptide. Introduction of FN1 reporter constructs, differing at position 15, revealed differences in secretion, with the FN1 Q15 variant being less well secreted. Moreover, the L15Q polymorphism was found to alter glycosylation in some cell models but not in human plasma., Conclusions: In addition to providing novel functional evidence implicating FN1 in cardioprotection, these findings demonstrate that a common variant within a secretion signal peptide regulates protein function.
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- 2022
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43. A Common Polymorphism in the FADS1 Locus Links miR1908 to Low-Density Lipoprotein Cholesterol Through BMP1.
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Beehler K, Nikpay M, Lau P, Dang AT, Lagace TA, Soubeyrand S, and McPherson R
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- Bone Morphogenetic Protein 1 genetics, Cell Line, Delta-5 Fatty Acid Desaturase, Fatty Acid Desaturases metabolism, Gene Expression Regulation, Humans, MicroRNAs genetics, Protein Stability, Proteolysis, RNA Stability, Receptors, LDL genetics, Receptors, LDL metabolism, Signal Transduction, Transforming Growth Factor beta1 genetics, Transforming Growth Factor beta1 metabolism, Bone Morphogenetic Protein 1 metabolism, Cholesterol, LDL metabolism, Fatty Acid Desaturases genetics, Hepatocytes enzymology, MicroRNAs metabolism, Polymorphism, Genetic
- Abstract
OBJECTIVE: Leveraging microRNA-Seq data and the 1000 Genomes imputed genotypes, we identified rs174561 as a strong microRNA quantitative trait loci for circulating microRNA-1908-5p with higher miR-1908-5p and reduced LDL (lowdensity lipoprotein)-cholesterol, fasting glucose and A1c concentrations in carriers of the rs-174561-C allele. Here, we have investigated the molecular mechanism(s) linking miR-1908-5p to LDL-C concentrations. APPROACH AND RESULTS: Transfection experiments demonstrate that the presence of the C allele significantly increases miR- 1908-5p abundance relative to the T allele. LDLR mRNA and low-density lipoprotein receptor (LDLR) total protein were unchanged in response to differential miR-1908-5p expression. However, the ratio of the cleaved to full-length form of LDLR decreased with miR-1908-5p mimic and increased with miR-1908-5p inhibitor treatment. BMP1 (bone morphogenetic protein 1) is a protease responsible for LDLR cleavage, and we show that miR-1908-5p mimic reduces BMP1 mRNA. Using a reporter array, we identified the TGF-β (transforming growth factor-beta) signaling pathway activity to be reduced by miR- 1908-5p mimic treatment, and this was associated with reduced TGFB1 expression. TGF-β signaling increases BMP1, and we further demonstrate that the effect of miR-1908-5p on LDLR cleavage is abolished by exogenous TGF-β treatment. CONCLUSIONS: These findings uncover a mechanism whereby miR-1908-5p reduces TGFB1 abundance resulting in lower expression of BMP1, ultimately leading to reduced LDLR cleavage. Cleavage of the mature LDLR is known to reduce cell surface affinity for LDL, thereby linking miR-1908-5p to lower circulating LDL-cholesterol levels.
- Published
- 2021
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44. Epigenome-Wide Study Identified Methylation Sites Associated with the Risk of Obesity.
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Nikpay M, Ravati S, Dent R, and McPherson R
- Subjects
- Adenylyl Cyclases genetics, Body Mass Index, Cyclins genetics, Epigenomics methods, Genome-Wide Association Study, HSP40 Heat-Shock Proteins genetics, Humans, Mendelian Randomization Analysis, Microtubule-Associated Proteins genetics, Phenotype, Polymorphism, Single Nucleotide genetics, Pro-Opiomelanocortin genetics, Protein Serine-Threonine Kinases genetics, Quantitative Trait Loci, Risk Factors, Sodium-Glucose Transport Proteins genetics, rab GTP-Binding Proteins genetics, DNA Methylation genetics, Epigenome genetics, Genetic Predisposition to Disease genetics, Obesity genetics
- Abstract
Here, we performed a genome-wide search for methylation sites that contribute to the risk of obesity. We integrated methylation quantitative trait locus (mQTL) data with BMI GWAS information through a SNP-based multiomics approach to identify genomic regions where mQTLs for a methylation site co-localize with obesity risk SNPs. We then tested whether the identified site contributed to BMI through Mendelian randomization. We identified multiple methylation sites causally contributing to the risk of obesity. We validated these findings through a replication stage. By integrating expression quantitative trait locus (eQTL) data, we noted that lower methylation at cg21178254 site upstream of CCNL1 contributes to obesity by increasing the expression of this gene. Higher methylation at cg02814054 increases the risk of obesity by lowering the expression of MAST3 , whereas lower methylation at cg06028605 contributes to obesity by decreasing the expression of SLC5A11 . Finally, we noted that rare variants within 2p23.3 impact obesity by making the cg01884057 site more susceptible to methylation, which consequently lowers the expression of POMC , ADCY3 and DNAJC27 . In this study, we identify methylation sites associated with the risk of obesity and reveal the mechanism whereby a number of these sites exert their effects. This study provides a framework to perform an omics-wide association study for a phenotype and to understand the mechanism whereby a rare variant causes a disease.
- Published
- 2021
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45. Convergence of biomarkers and risk factor trait loci of coronary artery disease at 3p21.31 and HLA region.
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Nikpay M and McPherson R
- Abstract
Here we seek to identify molecular biomarkers that mediate the effect of risk factors on coronary artery disease (CAD). We perform a SNP-based multiomics data analysis to find biomarkers (probes) causally associated with the risk of CAD within known genomic loci for its risk factors. We identify 78 biomarkers, the majority (64%) of which are methylation probes. We detect the convergence of several CNS and lifestyle trait loci and their biomarkers at the 3p21.31 and human leukocyte antigen (HLA) regions. The 3p21.31 locus was the most populated region in the convergence of biomarkers and risk factors. In this region, we noted as the BSN gene becomes methylated the level of stomatin (STOM) in blood increases and this contributes to higher risk of CAD. In the HLA locus, we identify several methylation biomarkers associated with various CAD risk factors. SNPs in the CFB gene display a trans-regulatory impact on the GRIA4 protein level. A methylation site upstream of the APOE gene is associated with a higher protein level of S100A13 which in turn leads to higher LDL-C and greater CAD risk. We find UHRF1BP1 and ILRUN mediate the effect of obesity on CAD whereas methylation sites within NOS3 and CKM mediate the effect of their associated-risk factors on CAD. This study provides further insight into the biology of CAD and identifies a list of biomarkers that mediate the impact of risk factors on CAD. A SNP-based initiative can unite data from various fields of omics into a single network of knowledge.
- Published
- 2021
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46. Multiomics Screening Identifies Molecular Biomarkers Causally Associated With the Risk of Coronary Artery Disease.
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Nikpay M, Soubeyrand S, Tahmasbi R, and McPherson R
- Subjects
- Biomarkers blood, Coronary Artery Disease blood, DNA Methylation genetics, Humans, Mendelian Randomization Analysis, Molecular Probes metabolism, Polymorphism, Single Nucleotide genetics, Risk Factors, Biomarkers metabolism, Coronary Artery Disease genetics, Genetic Predisposition to Disease, Genomics
- Abstract
Background: In this study, we aimed to investigate functional mechanisms underlying coronary artery disease (CAD) loci and find molecular biomarkers for CAD., Methods: We devised a multiomics data analysis approach based on Mendelian randomization and utilized it to search for molecular biomarkers causally associated with the risk of CAD within genomic regions known to be associated with CAD., Results: Through our CAD-centered multiomics data analysis approach, we identified 33 molecular biomarkers (probes) that were causally associated with the risk of CAD. The majority of these (N=19) were methylation probes; moreover, methylation was often behind the causal effect of expression/protein probes. We identified a number of novel loci that have a causal impact on CAD including C5orf38 , SF3A3 , DHX36 , and MRPL33 . Furthermore, by integrating the risk factors of CAD in our analysis, we were able to investigate the clinical pathways whereby several of our probes exert their effect. We found that the SELE protein level in the blood is under the trans-regulatory impact of methylation sites within the ABO gene and that SELE exerts its effect on CAD through immune, glycemic, and lipid metabolism, making it a candidate of interest for therapeutic interventions. We found the methylation site, cg05126514 within the BSN gene exert its effect on CAD through central nervous system-lifestyle risk factors. Finally, genes with a transcriptional regulatory role ( SF3A3 , ILF3 , and N4BP2L2 ) exert their effect on CAD through height., Conclusions: We demonstrate that multiomics data analysis is a powerful approach to unravel the functional mechanisms underlying CAD loci and to identify novel molecular biomarkers. Our results indicate epigenetic modifications are important in the pathogenesis of CAD and identifying and targeting these sites is of potential therapeutic interest to address the detrimental effects of both environmental and genetic factors.
- Published
- 2020
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47. Influence of synthetic wastewater on entrapped air on the isotactic and atactic polypropylene microplastic surfaces.
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Nikpay M, Eqtesadi S, and Krebs P
- Abstract
The municipal wastewater collection system is recognized as an initial point of interaction between microplastics (MPs) and the urban wastewater matrix. The raw wastewater contains a wide variety of organic and inorganic substances including chemicals and heavy metals. However, the fate of MPs in urban sewer systems is not yet well understood. In this work two types of virgin polypropylene (PP) samples, isotactic (iPP) and atactic (aPP), were exposed to two synthetic wastewater solutions in order to study their effects on the physical properties of the hydrophobic polymer surfaces. Particular attention was paid to the pollution adhesion at the air-liquid-solid interfaces of the surface air pockets entrapped on the polymer surfaces. The first wastewater solution consists of mixed fat, oil and grease (FOG) - surfactant and another which is an exclusively contained wastewater surfactant. The interaction experiment over a period of 10 min between the polymer's air pocket and solutions indicated that the size of the bubble in the mixed FOG-surfactant solution increased more pronouncedly for iPP (%152) in contrast to aPP (%31) and was also compared with the greater surface roughness of the polymers. The size variation of the spherical cap on the immersed polymer surfaces were measured between 17 µm and 85 µm using image processing techniques while the data was analyzed by the Young-Laplace equation. The corresponding technical surface roughness of the polymers, the surface tension of the liquids and their air/water contact angle on the flat polymer surfaces were also measured. The results of this study indicated that surface air pockets influence the adsorption capacity of MPs and thus their buoyancy and contamination potential., Competing Interests: Conflict of interestThe authors declare that there is no conflict of interest., (© Springer Nature Switzerland AG 2020.)
- Published
- 2020
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48. Publisher Correction: RIPK1 gene variants associate with obesity in humans and can be therapeutically silenced to reduce obesity in mice.
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Karunakaran D, Turner AW, Duchez AC, Soubeyrand S, Rasheed A, Smyth D, Cook DP, Nikpay M, Kandiah JW, Pan C, Geoffrion M, Lee R, Boytard L, Wyatt H, Nguyen MA, Lau P, Laakso M, Ramkhelawon B, Alvarez M, Pietiläinen KH, Pajukanta P, Vanderhyden BC, Liu P, Berger SB, Gough PJ, Bertin J, Harper ME, Lusis AJ, McPherson R, and Rayner KJ
- Abstract
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
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- 2020
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49. RIPK1 gene variants associate with obesity in humans and can be therapeutically silenced to reduce obesity in mice.
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Karunakaran D, Turner AW, Duchez AC, Soubeyrand S, Rasheed A, Smyth D, Cook DP, Nikpay M, Kandiah JW, Pan C, Geoffrion M, Lee R, Boytard L, Wyatt H, Nguyen MA, Lau P, Laakso M, Ramkhelawon B, Alvarez M, Pietiläinen KH, Pajukanta P, Vanderhyden BC, Liu P, Berger SB, Gough PJ, Bertin J, Harper ME, Lusis AJ, McPherson R, and Rayner KJ
- Subjects
- Adipocytes metabolism, Adipose Tissue, Animals, Basic-Leucine Zipper Transcription Factors genetics, Energy Metabolism, Glucose Tolerance Test, Humans, Male, Mice, Mice, Inbred C57BL, Mice, Obese, Polymorphism, Genetic, Subcutaneous Fat metabolism, Gene Silencing, Obesity genetics, Obesity therapy, Receptor-Interacting Protein Serine-Threonine Kinases genetics
- Abstract
Obesity is a major public health burden worldwide and is characterized by chronic low-grade inflammation driven by the cooperation of the innate immune system and dysregulated metabolism in adipose tissue and other metabolic organs. Receptor-interacting serine/threonine-protein kinase 1 (RIPK1) is a central regulator of inflammatory cell function that coordinates inflammation, apoptosis and necroptosis in response to inflammatory stimuli. Here we show that genetic polymorphisms near the human RIPK1 locus associate with increased RIPK1 gene expression and obesity. We show that one of these single nucleotide polymorphisms is within a binding site for E4BP4 and increases RIPK1 promoter activity and RIPK1 gene expression in adipose tissue. Therapeutic silencing of RIPK1 in vivo in a mouse model of diet-induced obesity dramatically reduces fat mass, total body weight and improves insulin sensitivity, while simultaneously reducing macrophage and promoting invariant natural killer T cell accumulation in adipose tissue. These findings demonstrate that RIPK1 is genetically associated with obesity, and reducing RIPK1 expression is a potential therapeutic approach to target obesity and related diseases.
- Published
- 2020
- Full Text
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50. SGCG rs679482 Associates With Weight Loss Success in Response to an Intensively Supervised Outpatient Program.
- Author
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Nikpay M, Lau P, Soubeyrand S, Whytock KL, Beehler K, Pileggi C, Ghosh S, Harper ME, Dent R, and McPherson R
- Subjects
- Adult, Female, Genetic Predisposition to Disease, Genotype, Humans, Introns, Male, Middle Aged, Obesity genetics, White People genetics, Obesity therapy, Outpatients, Polymorphism, Single Nucleotide, Sarcoglycans genetics, Weight Loss genetics, Weight Reduction Programs
- Abstract
Weight loss in response to energy restriction is highly variable, and identification of genetic contributors can provide insights into underlying biology. Leveraging 1000 Genomes imputed genotypes, we carried out genome-wide association study (GWAS) analysis in 551 unrelated obese subjects of European ancestry who participated in an intensively supervised weight loss program with replication of promising signals in an independent sample of 1,331 obese subjects who completed the program at a later date. By single nucleotide polymorphism-based and sib-pair analysis, we show that that weight loss is a heritable trait, with estimated heritability ( h
2 = 0.49) within the range reported for obesity. We find rs679482, intronic to SGCG (sarcoglycan γ), highly expressed in skeletal muscle, to concordantly associate with weight loss in discovery and replication samples reaching GWAS significance in the combined meta-analysis (β = -0.35, P = 1.7 × 10-12 ). Located in a region of open chromatin, rs679482 is predicted to bind DMRT2, and allele-specific transcription factor binding analysis indicates preferential binding of DMRT2 to rs679482-A. Concordantly, rs679482-A impairs native repressor activity and increases basal and DMRT2-mediated enhancer activity. These findings confirm that weight loss is a heritable trait and provide evidence by which a novel variant in SGCG, rs679482, leads to impaired diet response., (© 2020 by the American Diabetes Association.)- Published
- 2020
- Full Text
- View/download PDF
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