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Emittance measurements using synchrotron radiation are usually performed using x-rays to avoid diffraction limits. Interferometric techniques using visible light are also used to measure either the horizontal or the vertical beam projection. Several measurements rotating the interferometry axis are needed to obtain a full beam reconstruction. In this report we present a new interferometric multi-aperture masking technique and data analysis, inspired by astronomical methods, that are able to provide a full 2-D transverse beam reconstruction in a single acquisition. Results of beam characterization obtained at ALBA synchrotron light source will also been shown., Comment: 4 pages, 8 figures, Accepted in IBIC 2024

We demonstrate the Shape-Orientation-Size conservation principle for a 3-element interferometer using aperture plane masking at the ALBA visible synchrotron radiation light source. We then use these data to demonstrate Image Plane Self-Calibration., Comment: Submitted to the Journal of Optical Society of America A (JOSA A). 8 pages, 9 figures in total

Double-aperture Young interferometry is widely used in accelerators to provide a one-dimensional beam measurement. We improve this technique by combining and further developing techniques of non-redundant, two-dimensional, aperture masking and self-calibration from astronomy. Using visible synchrotron radiation, tests at the ALBA synchrotron show that this method provides an accurate two-dimensional beam transverse characterisation, even from a single 1 ms interferogram. The non-redundancy of the aperture mask in the technique enables it to be resistant to spatial phase fluctuations that might be introduced by vibration of optical components, or in the laboratory atmosphere., Comment: 8 pages, 8 figures, revised submission to Phys. Rev. Accel. Beams

We introduce SigNova, a new semi-supervised framework for detecting anomalies in streamed data. While our initial examples focus on detecting radio-frequency interference (RFI) in digitized signals within the field of radio astronomy, it is important to note that SigNova's applicability extends to any type of streamed data. The framework comprises three primary components. Firstly, we use the signature transform to extract a canonical collection of summary statistics from observational sequences. This allows us to represent variable-length visibility samples as finite-dimensional feature vectors. Secondly, each feature vector is assigned a novelty score, calculated as the Mahalanobis distance to its nearest neighbor in an RFI-free training set. By thresholding these scores we identify observation ranges that deviate from the expected behavior of RFI-free visibility samples without relying on stringent distributional assumptions. Thirdly, we integrate this anomaly detector with Pysegments, a segmentation algorithm, to localize consecutive observations contaminated with RFI, if any. This approach provides a compelling alternative to classical windowing techniques commonly used for RFI detection. Importantly, the complexity of our algorithm depends on the RFI pattern rather than on the size of the observation window. We demonstrate how SigNova improves the detection of various types of RFI (e.g., broadband and narrowband) in time-frequency visibility data. We validate our framework on the Murchison Widefield Array (MWA) telescope and simulated data and the Hydrogen Epoch of Reionization Array (HERA).

Radio interferometers targeting the 21cm brightness temperature fluctuations at high redshift are subject to systematic effects that operate over a range of different timescales. These can be isolated by designing appropriate Fourier filters that operate in fringe-rate (FR) space, the Fourier pair of local sidereal time (LST). Applications of FR filtering include separating effects that are correlated with the rotating sky vs. those relative to the ground, down-weighting emission in the primary beam sidelobes, and suppressing noise. FR filtering causes the noise contributions to the visibility data to become correlated in time however, making interpretation of subsequent averaging and error estimation steps more subtle. In this paper, we describe fringe rate filters that are implemented using discrete prolate spheroidal sequences, and designed for two different purposes -- beam sidelobe/horizon suppression (the `mainlobe' filter), and ground-locked systematics removal (the `notch' filter). We apply these to simulated data, and study how their properties affect visibilities and power spectra generated from the simulations. Included is an introduction to fringe-rate filtering and a demonstration of fringe-rate filters applied to simple situations to aid understanding., Comment: 21 pages, 18 figures, submitted to Monthly Notices of the Royal Astronomical Society

This paper presents the design and deployment of the Hydrogen Epoch of Reionization Array (HERA) phase II system. HERA is designed as a staged experiment targeting 21 cm emission measurements of the Epoch of Reionization. First results from the phase I array are published as of early 2022, and deployment of the phase II system is nearing completion. We describe the design of the phase II system and discuss progress on commissioning and future upgrades. As HERA is a designated Square Kilometer Array (SKA) pathfinder instrument, we also show a number of "case studies" that investigate systematics seen while commissioning the phase II system, which may be of use in the design and operation of future arrays. Common pathologies are likely to manifest in similar ways across instruments, and many of these sources of contamination can be mitigated once the source is identified.

The concept of Roman domination has been a subject of intrigue for more than two decades with the fundamental Roman domination problem standing out as one of the most significant challenges in this field. This article studies a practically motivated generalization of this problem, known as the k-strong Roman domination. In this variation, defenders within a network are tasked with safeguarding any k vertices simultaneously, under multiple attacks. The objective is to find a feasible mapping that assigns an (integer) weight to each vertex of the input graph with a minimum sum of weights across all vertices. A function is considered feasible if any non-defended vertex, i.e. one labeled by zero, is protected by at least one of its neighboring vertices labeled by at least two. Furthermore, each defender ensures the safety of a non-defended vertex by imparting a value of one to it while always retaining a one for themselves. To the best of our knowledge, this paper represents the first theoretical study on this problem. The study presents results for general graphs, establishes connections between the problem at hand and other domination problems, and provides exact values and bounds for specific graph classes, including complete graphs, paths, cycles, complete bipartite graphs, grids, and a few selected classes of convex polytopes. Additionally, an attainable lower bound for general cubic graphs is provided.

Detection of the faint 21 cm line emission from the Cosmic Dawn and Epoch of Reionisation will require not only exquisite control over instrumental calibration and systematics to achieve the necessary dynamic range of observations but also validation of analysis techniques to demonstrate their statistical properties and signal loss characteristics. A key ingredient in achieving this is the ability to perform high-fidelity simulations of the kinds of data that are produced by the large, many-element, radio interferometric arrays that have been purpose-built for these studies. The large scale of these arrays presents a computational challenge, as one must simulate a detailed sky and instrumental model across many hundreds of frequency channels, thousands of time samples, and tens of thousands of baselines for arrays with hundreds of antennas. In this paper, we present a fast matrix-based method for simulating radio interferometric measurements (visibilities) at the necessary scale. We achieve this through judicious use of primary beam interpolation, fast approximations for coordinate transforms, and a vectorised outer product to expand per-antenna quantities to per-baseline visibilities, coupled with standard parallelisation techniques. We validate the results of this method, implemented in the publicly-available matvis code, against a high-precision reference simulator, and explore its computational scaling on a variety of problems., Comment: 25 pages, 20 figures, submitted to RAS Techniques and Instruments, matvis is publicly available at https://github.com/HERA-Team/matvis

Observations with radio arrays that target the 21-cm signal originating from the early Universe suffer from a variety of systematic effects. An important class of these are reflections and spurious couplings between antennas. We apply a Hamiltonian Monte Carlo sampler to the modelling and mitigation of these systematics in simulated Hydrogen Epoch of Reionisation Array (HERA) data. This method allows us to form statistical uncertainty estimates for both our models and the recovered visibilities, which is an important ingredient in establishing robust upper limits on the Epoch of Reionisation (EoR) power spectrum. In cases where the noise is large compared to the EoR signal, this approach can constrain the systematics well enough to mitigate them down to the noise level for both systematics studied. Where the noise is smaller than the EoR, our modelling can mitigate the majority of the reflections with there being only a minor level of residual systematics, while cross-coupling sees essentially complete mitigation. Our approach performs similarly to existing filtering/fitting techniques used in the HERA pipeline, but with the added benefit of rigorously propagating uncertainties. In all cases it does not significantly attenuate the underlying signal., Comment: 19 pages, 14 figures, submitted to MNRAS

The key to detecting neutral hydrogen during the epoch of reionization (EoR) is to separate the cosmological signal from the dominating foreground radiation. We developed direct optimal mapping (DOM) to map interferometric visibilities; it contains only linear operations, with full knowledge of point spread functions from visibilities to images. Here, we demonstrate a fast Fourier transform-based image power spectrum and its window functions computed from the DOM images. We use noiseless simulation, based on the Hydrogen Epoch of Reionization Array Phase I configuration, to study the image power spectrum properties. The window functions show $<10^{-11}$ of the integrated power leaks from the foreground-dominated region into the EoR window; the 2D and 1D power spectra also verify the separation between the foregrounds and the EoR., Comment: Published in ApJ

In this article we examine T-dualization in double space formalism of type II superstring theory in pure spinor formulation. Background fields that we consider will all be constant except Ramond-Ramond field which will infinitesimally depend only on bosonic coordinates $x^\mu$. In double space T-dual transformations are represented as permutations between starting $x^\mu$ and dual coordinates $y_\mu$. Combining these two sets of coordinates into double coordinate $Z^M = (x^\mu, y_\mu)$ while demanding that T-dual double coordinates have same transformation laws, we obtain how background fields transform under T-duality. Comparing these results with ones obtained with Buscher T-dualization procedure we are able to conclude that these two approaches are equivalent for cases where background fields have coordinate dependence.

Radio interferometers aiming to measure the power spectrum of the redshifted 21 cm line during the Epoch of Reionisation (EoR) need to achieve an unprecedented dynamic range to separate the weak signal from overwhelming foreground emissions. Calibration inaccuracies can compromise the sensitivity of these measurements to the effect that a detection of the EoR is precluded. An alternative to standard analysis techniques makes use of the closure phase, which allows one to bypass antenna-based direction-independent calibration. Similarly to standard approaches, we use a delay spectrum technique to search for the EoR signal. Using 94 nights of data observed with Phase I of the Hydrogen Epoch of Reionization Array (HERA), we place approximate constraints on the 21 cm power spectrum at $z=7.7$. We find at 95% confidence that the 21 cm EoR brightness temperature is $\le$(372)$^2$ "pseudo" mK$^2$ at 1.14 "pseudo" $h$ Mpc$^{-1}$, where the "pseudo" emphasises that these limits are to be interpreted as approximations to the actual distance scales and brightness temperatures. Using a fiducial EoR model, we demonstrate the feasibility of detecting the EoR with the full array. Compared to standard methods, the closure phase processing is relatively simple, thereby providing an important independent check on results derived using visibility intensities, or related., Comment: 16 pages, 14 figures, accepted for publication by MNRAS

In this paper we consider measures of similarity between two sets of strings built up using the Hamming distance and tools of persistence homology as a basis. First we describe the construction of the \v Cech filtration adjoined to the set of strings, the persistence module corresponding to this filtration and its barcode structure. Using these means, we introduce a novel similarity measure for two sets of strings, based on a comparison of bars within their barcodes of the same dimension. Our idea is to look for a comparison that will take under consideration not only the overlap of bars, but also ensure that observed bars are qualitatively matched, in the sense that they represent similar homological features. To make this idea happen, we developed a method called the separation of simplex radii technique.

Radio Frequency Interference (RFI) is one of the systematic challenges preventing 21cm interferometric instruments from detecting the Epoch of Reionization. To mitigate the effects of RFI on data analysis pipelines, numerous inpaint techniques have been developed to restore RFI corrupted data. We examine the qualitative and quantitative errors introduced into the visibilities and power spectrum due to inpainting. We perform our analysis on simulated data as well as real data from the Hydrogen Epoch of Reionization Array (HERA) Phase 1 upper limits. We also introduce a convolutional neural network that capable of inpainting RFI corrupted data in interferometric instruments. We train our network on simulated data and show that our network is capable at inpainting real data without requiring to be retrained. We find that techniques that incorporate high wavenumbers in delay space in their modeling are best suited for inpainting over narrowband RFI. We also show that with our fiducial parameters Discrete Prolate Spheroidal Sequences (DPSS) and CLEAN provide the best performance for intermittent ``narrowband'' RFI while Gaussian Progress Regression (GPR) and Least Squares Spectral Analysis (LSSA) provide the best performance for larger RFI gaps. However we caution that these qualitative conclusions are sensitive to the chosen hyperparameters of each inpainting technique. We find these results to be consistent in both simulated and real visibilities. We show that all inpainting techniques reliably reproduce foreground dominated modes in the power spectrum. Since the inpainting techniques should not be capable of reproducing noise realizations, we find that the largest errors occur in the noise dominated delay modes. We show that in the future, as the noise level of the data comes down, CLEAN and DPSS are most capable of reproducing the fine frequency structure in the visibilities of HERA data., Comment: 21 pages, 13 figures

We report the most sensitive upper limits to date on the 21 cm epoch of reionization power spectrum using 94 nights of observing with Phase I of the Hydrogen Epoch of Reionization Array (HERA). Using similar analysis techniques as in previously reported limits (HERA Collaboration 2022a), we find at 95% confidence that $\Delta^2(k = 0.34$ $h$ Mpc$^{-1}$) $\leq 457$ mK$^2$ at $z = 7.9$ and that $\Delta^2 (k = 0.36$ $h$ Mpc$^{-1}) \leq 3,496$ mK$^2$ at $z = 10.4$, an improvement by a factor of 2.1 and 2.6 respectively. These limits are mostly consistent with thermal noise over a wide range of $k$ after our data quality cuts, despite performing a relatively conservative analysis designed to minimize signal loss. Our results are validated with both statistical tests on the data and end-to-end pipeline simulations. We also report updated constraints on the astrophysics of reionization and the cosmic dawn. Using multiple independent modeling and inference techniques previously employed by HERA Collaboration (2022b), we find that the intergalactic medium must have been heated above the adiabatic cooling limit at least as early as $z = 10.4$, ruling out a broad set of so-called "cold reionization" scenarios. If this heating is due to high-mass X-ray binaries during the cosmic dawn, as is generally believed, our result's 99% credible interval excludes the local relationship between soft X-ray luminosity and star formation and thus requires heating driven by evolved low-metallicity stars., Comment: 57 pages, 37 figures. Updated to match the accepted ApJ version. Corresponding author: Joshua S. Dillon

Combining the visibilities measured by an interferometer to form a cosmological power spectrum is a complicated process. In a delay-based analysis, the mapping between instrumental and cosmological space is not a one-to-one relation. Instead, neighbouring modes contribute to the power measured at one point, with their respective contributions encoded in the window functions. To better understand the power measured by an interferometer, we assess the impact of instrument characteristics and analysis choices on these window functions. Focusing on the Hydrogen Epoch of Reionization Array (HERA) as a case study, we find that long-baseline observations correspond to enhanced low-k tails of the window functions, which facilitate foreground leakage, whilst an informed choice of bandwidth and frequency taper can reduce said tails. With simple test cases and realistic simulations, we show that, apart from tracing mode mixing, the window functions help accurately reconstruct the power spectrum estimator of simulated visibilities. The window functions depend strongly on the beam chromaticity, and less on its spatial structure - a Gaussian approximation, ignoring side lobes, is sufficient. Finally, we investigate the potential of asymmetric window functions, down-weighting the contribution of low-k power to avoid foreground leakage. The window functions presented here correspond to the latest HERA upper limits for the full Phase I data. They allow an accurate reconstruction of the power spectrum measured by the instrument and will be used in future analyses to confront theoretical models and data directly in cylindrical space., Comment: 18 pages, 19 figures, accepted for publication in MNRAS

We investigate effects of fermionic T-duality on type II superstring in presence of Ramond-Ramond (RR) field that has infinitesimal linear dependence on bosonic coordinate $x^\mu$. Other fields are assumed to be constant. Procedure that we employ for obtaining fermionic T-dual theory is Busher procedure, where we will consider two distinct cases. One, where action has not been T-dualized along bosonic coordinates and other where it has. By analyzing these two cases, their actions and T-dual transformation laws, we obtain some insight into how background fields transform and what are necessary ingredients for emergence of fermionic non-commutativity.

Motivated by the desire for wide-field images with well-defined statistical properties for 21cm cosmology, we implement an optimal mapping pipeline that computes a maximum likelihood estimator for the sky using the interferometric measurement equation. We demonstrate this direct optimal mapping with data from the Hydrogen Epoch of Reionization (HERA) Phase I observations. After validating the pipeline with simulated data, we develop a maximum likelihood figure-of-merit for comparing four sky models at 166MHz with a bandwidth of 100kHz. The HERA data agree with the GLEAM catalogs to <10%. After subtracting the GLEAM point sources, the HERA data discriminate between the different continuum sky models, providing most support for the model of Byrne et al. 2021. We report the computation cost for mapping the HERA Phase I data and project the computation for the HERA 320-antenna data; both are feasible with a modern server. The algorithm is broadly applicable to other interferometers and is valid for wide-field and non-coplanar arrays., Comment: 16 pages, 10 figures, 2 tables, published on ApJ

In this paper we will consider noncommutativity that arises from bosonic T-dualization of type II superstring in presence of Ramond-Ramond (RR) field, which linearly depends on the bosonic coordinates $x^\mu$. The derivative of the RR field $C^{\alpha\beta}_\mu$ is infinitesimal. We will employ generalized Buscher procedure that can be applied to cases that have coordinate dependent background fields. Bosonic part of newly obtained T-dual theory is non-local. It is defined in non-geometric space spanned by Lagrange multipliers $y_\mu$. We will apply generalized Buscher procedure once more on T-dual theory and prove that original theory can be salvaged. Finally, we will use T-dual transformation laws along with Poisson brackets of original theory to derive Poisson bracket structure of T-dual theory and nonassociativity relation. Noncommutativity parameter depends on the supercoordinates $x^\mu$, $\theta^\alpha$ and $\bar\theta^\alpha$, while nonassociativity parameter is a constant tensor containing infinitesimal $C^{\alpha\beta}_\mu$.

We present a framework for identifying and flagging malfunctioning antennas in large radio interferometers. We outline two distinct categories of metrics designed to detect outliers along known failure modes of large arrays: cross-correlation metrics, based on all antenna pairs, and auto-correlation metrics, based solely on individual antennas. We define and motivate the statistical framework for all metrics used, and present tailored visualizations that aid us in clearly identifying new and existing systematics. We implement these techniques using data from 105 antennas in the Hydrogen Epoch of Reionization Array (HERA) as a case study. Finally, we provide a detailed algorithm for implementing these metrics as flagging tools on real data sets., Comment: 31 pages, 17 figures

We describe a scalable distributed imaging algorithm framework for next-generation radio telescopes, managing the Fourier transform from apertures to sky (or vice versa) with a focus on minimising memory load, data transfers, and computation. Our algorithm uses smooth window functions to isolate the influence between specific regions of spatial-frequency and image space. This allows the distribution of image data between nodes and the construction of segments of frequency space exactly when and where needed. The developed prototype distributes terabytes of image data across many nodes, while generating visibilities at throughput and accuracy competitive with existing software. Scaling is demonstrated to be better than cubic in problem complexity (for baseline length and field of view), reducing the risk involved in growing radio astronomy processing to large telescopes like the Square Kilometre Array., Comment: Final revision

Recently, the Hydrogen Epoch of Reionization Array (HERA) collaboration has produced the experiment's first upper limits on the power spectrum of 21-cm fluctuations at z~8 and 10. Here, we use several independent theoretical models to infer constraints on the intergalactic medium (IGM) and galaxies during the epoch of reionization (EoR) from these limits. We find that the IGM must have been heated above the adiabatic cooling threshold by z~8, independent of uncertainties about the IGM ionization state and the nature of the radio background. Combining HERA limits with galaxy and EoR observations constrains the spin temperature of the z~8 neutral IGM to 27 K < T_S < 630 K (2.3 K < T_S < 640 K) at 68% (95%) confidence. They therefore also place a lower bound on X-ray heating, a previously unconstrained aspects of early galaxies. For example, if the CMB dominates the z~8 radio background, the new HERA limits imply that the first galaxies produced X-rays more efficiently than local ones (with soft band X-ray luminosities per star formation rate constrained to L_X/SFR = { 10^40.2, 10^41.9 } erg/s/(M_sun/yr) at 68% confidence), consistent with expectations of X-ray binaries in low-metallicity environments. The z~10 limits require even earlier heating if dark-matter interactions (e.g., through millicharges) cool down the hydrogen gas. Using a model in which an extra radio background is produced by galaxies, we rule out (at 95% confidence) the combination of high radio and low X-ray luminosities of L_{r,\nu}/SFR > 3.9 x 10^24 W/Hz/(M_sun/yr) and L_X/SFR<10^40 erg/s/(M_sun/yr). The new HERA upper limits neither support nor disfavor a cosmological interpretation of the recent EDGES detection. The analysis framework described here provides a foundation for the interpretation of future HERA results., Comment: 40 pages, 19 figures, accepted to ApJ

We report upper-limits on the Epoch of Reionization (EoR) 21 cm power spectrum at redshifts 7.9 and 10.4 with 18 nights of data ($\sim36$ hours of integration) from Phase I of the Hydrogen Epoch of Reionization Array (HERA). The Phase I data show evidence for systematics that can be largely suppressed with systematic models down to a dynamic range of $\sim10^9$ with respect to the peak foreground power. This yields a 95% confidence upper limit on the 21 cm power spectrum of $\Delta^2_{21} \le (30.76)^2\ {\rm mK}^2$ at $k=0.192\ h\ {\rm Mpc}^{-1}$ at $z=7.9$, and also $\Delta^2_{21} \le (95.74)^2\ {\rm mK}^2$ at $k=0.256\ h\ {\rm Mpc}^{-1}$ at $z=10.4$. At $z=7.9$, these limits are the most sensitive to-date by over an order of magnitude. While we find evidence for residual systematics at low line-of-sight Fourier $k_\parallel$ modes, at high $k_\parallel$ modes we find our data to be largely consistent with thermal noise, an indicator that the system could benefit from deeper integrations. The observed systematics could be due to radio frequency interference, cable sub-reflections, or residual instrumental cross-coupling, and warrant further study. This analysis emphasizes algorithms that have minimal inherent signal loss, although we do perform a careful accounting in a companion paper of the small forms of loss or bias associated with the pipeline. Overall, these results are a promising first step in the development of a tuned, instrument-specific analysis pipeline for HERA, particularly as Phase II construction is completed en route to reaching the full sensitivity of the experiment., Comment: Accepted to ApJ. https://reionization.org/science/public-data-release-1/

In this paper we considered the bosonic string action in the presence of metric $G_{\mu\nu}$, Kalb-Ramond field $B_{\mu\nu}$ and dilaton field $\Phi$. The quantum conformal invariance is achieved if all three one-loop $\beta$-functions are zero. But, $\beta^\Phi$, $\beta$-function related to the dilaton field, can also be equal to some nonzero constant $c$, which is actually the central charge of Virasoro algebra. The anomaly contained in the Schwinger term of Virasoro algebra is canceled by adding Liouville term to the sigma model action and quantum conformal invariance is restored. The space-time action, which Euler-Lagrange equations of motion are quantum conformal invariance conditions with nonzero $\beta^{\Phi}$, is Einstein-Hilbert action with some matter and cosmological constant. The cosmological constant is obtained within landscape framework as linear function of the central charge of Virasoro algebra., Comment: complete revision of the article

Precision calibration poses challenges to experiments probing the redshifted 21-cm signal of neutral hydrogen from the Cosmic Dawn and Epoch of Reionization (z~30-6). In both interferometric and global signal experiments, systematic calibration is the leading source of error. Though many aspects of calibration have been studied, the overlap between the two types of instruments has received less attention. We investigate the sky based calibration of total power measurements with a HERA dish and an EDGES style antenna to understand the role of auto-correlations in the calibration of an interferometer and the role of sky in calibrating a total power instrument. Using simulations we study various scenarios such as time variable gain, incomplete sky calibration model, and primary beam model. We find that temporal gain drifts, sky model incompleteness, and beam inaccuracies cause biases in the receiver gain amplitude and the receiver temperature estimates. In some cases, these biases mix spectral structure between beam and sky resulting in spectrally variable gain errors. Applying the calibration method to the HERA and EDGES data, we find good agreement with calibration via the more standard methods. Although instrumental gains are consistent with beam and sky errors similar in scale to those simulated, the receiver temperatures show significant deviations from expected values. While we show that it is possible to partially mitigate biases due to model inaccuracies by incorporating a time-dependent gain model in calibration, the resulting errors on calibration products are larger and more correlated. Completely addressing these biases will require more accurate sky and primary beam models., Comment: 16 pages, 13 figures, 1 table; accepted for publication in MNRAS main journal

We describe the validation of the HERA Phase I software pipeline by a series of modular tests, building up to an end-to-end simulation. The philosophy of this approach is to validate the software and algorithms used in the Phase I upper limit analysis on wholly synthetic data satisfying the assumptions of that analysis, not addressing whether the actual data meet these assumptions. We discuss the organization of this validation approach, the specific modular tests performed, and the construction of the end-to-end simulations. We explicitly discuss the limitations in scope of the current simulation effort. With mock visibility data generated from a known analytic power spectrum and a wide range of realistic instrumental effects and foregrounds, we demonstrate that the current pipeline produces power spectrum estimates that are consistent with known analytic inputs to within thermal noise levels (at the 2 sigma level) for k > 0.2 h/Mpc for both bands and fields considered. Our input spectrum is intentionally amplified to enable a strong `detection' at k ~0.2 h/Mpc -- at the level of ~25 sigma -- with foregrounds dominating on larger scales, and thermal noise dominating at smaller scales. Our pipeline is able to detect this amplified input signal after suppressing foregrounds with a dynamic range (foreground to noise ratio) of > 10^7. Our validation test suite uncovered several sources of scale-independent signal loss throughout the pipeline, whose amplitude is well-characterized and accounted for in the final estimates. We conclude with a discussion of the steps required for the next round of data analysis., Comment: 32 pages, 20 figures. Submitted to the Astrophysical Journal

As current- and next-generation astronomical instruments come online, they will generate an unprecedented deluge of data. Analyzing these data in real time presents unique conceptual and computational challenges, and their long-term storage and archiving is scientifically essential for generating reliable, reproducible results. We present here the real-time processing (RTP) system for the Hydrogen Epoch of Reionization Array (HERA), a radio interferometer endeavoring to provide the first detection of the highly redshifted 21 cm signal from Cosmic Dawn and the Epoch of Reionization by an interferometer. The RTP system consists of analysis routines run on raw data shortly after they are acquired, such as calibration and detection of radio-frequency interference (RFI) events. RTP works closely with the Librarian, the HERA data storage and transfer manager which automatically ingests data and transfers copies to other clusters for post-processing analysis. Both the RTP system and the Librarian are public and open source software, which allows for them to be modified for use in other scientific collaborations. When fully constructed, HERA is projected to generate over 50 terabytes (TB) of data each night, and the RTP system enables the successful scientific analysis of these data., Comment: 15 pages, 3 figures, published in Astronomy and Computing

Precise measurements of the 21 cm power spectrum are crucial for understanding the physical processes of hydrogen reionization. Currently, this probe is being pursued by low-frequency radio interferometer arrays. As these experiments come closer to making a first detection of the signal, error estimation will play an increasingly important role in setting robust measurements. Using the delay power spectrum approach, we have produced a critical examination of different ways that one can estimate error bars on the power spectrum. We do this through a synthesis of analytic work, simulations of toy models, and tests on small amounts of real data. We find that, although computed independently, the different error bar methodologies are in good agreement with each other in the noise-dominated regime of the power spectrum. For our preferred methodology, the predicted probability distribution function is consistent with the empirical noise power distributions from both simulated and real data. This diagnosis is mainly in support of the forthcoming HERA upper limit, and also is expected to be more generally applicable., Comment: 35 Pages, 9 Figures, 4 Tables. Replaced with accepted ApJ version; some clarifying text added in response to referee comments with no changes to results

We describe a system being developed for measuring the shapes of the mirrors of the Fred Young Submillimeter Telescope (FYST), now under construction for the CCAT Observatory. "Holographic" antenna-measuring techniques are an efficient and accurate way of measuring the surfaces of large millimeter-wave telescopes and they have the advantage of measuring the wave-front errors of the whole system under operational conditions, e.g. at night on an exposed site. Applying this to FYST, however, presents significant challenges because of the high accuracy needed, the fact that the telescope consists of two large off-axis mirrors, and a requirement that measurements can be made without personnel present. We use a high-frequency (~300GHz) source which is relatively close to the telescope aperture (<1/100th of the Fresnel distance) to minimize atmospheric effects. The main receiver is in the receiver cabin and can be moved under remote control to different positions, so that the wave-front errors in different parts of the focal plane can be measured. A second receiver placed on the yoke provides a phase reference. The signals are combined in a digital cross-correlation spectrometer. Scanning the telescope provides a map of the complex beam pattern. The surface errors are found by inference, i.e. we make models of the reflectors with errors and calculate the patterns expected, and then iterate to find the best match to the data. To do this we have developed a fast and accurate method for calculating the patterns using the Kirchhoff-Fresnel formulation. This paper presents details of the design and outlines the results from simulations of the measurement and inference process. These indicate that a measurement accuracy of ~3 microns rms is achievable., Comment: Proceedings Volume 11445, Ground-based and Airborne Telescopes VIII SPIE Astronomical Telescopes + Instrumentation, 2020, Online Only Conference

Practical aperture synthesis imaging algorithms work by iterating between estimating the sky brightness distribution and a comparison of a prediction based on this estimate with the measured data ("visibilities"). Accuracy in the latter step is crucial but is made difficult by irregular and non-planar sampling of data by the telescope. In this work we present a GPU implementation of 3d de-gridding which accurately deals with these two difficulties and is designed for distributed operation. We address the load balancing issues caused by large variation in visibilities that need to be computed. Using CUDA and NVidia GPUs we measure performance up to 1.2 billion visibilities per second., Comment: Published in the proceedings of ADASS XXX

With the development of modern radio interferometers, wide-field continuum surveys have been planned and undertaken, for which accurate wide-field imaging methods are essential. Based on the widely-used W-stacking method, we propose a new wide-field imaging algorithm that can synthesize visibility data from a model of the sky brightness via degridding, able to construct dirty maps from measured visibility data via gridding. Results carry the smallest approximation error yet achieved relative to the exact calculation involving the direct Fourier transform. In contrast to the original W-stacking method, the new algorithm performs least-misfit optimal gridding (and degridding) in all three directions, and is capable of achieving much higher accuracy than is feasible with the original algorithm. In particular, accuracy at the level of single precision arithmetic is readily achieved by choosing a least-misfit convolution function of width W=7 and an image cropping parameter of x0=0.25. If the accuracy required is only that attained by the original W-stacking method, the computational cost for both the gridding and FFT steps can be substantially reduced using the proposed method by making an appropriate choice of the width and image cropping parameters., Comment: 12 pages, 11 figures

The central challenge in 21~cm cosmology is isolating the cosmological signal from bright foregrounds. Many separation techniques rely on the accurate knowledge of the sky and the instrumental response, including the antenna primary beam. For drift-scan telescopes such as the Hydrogen Epoch of Reionization Array \citep[HERA, ][]{DeBoer2017} that do not move, primary beam characterization is particularly challenging because standard beam-calibration routines do not apply \citep{Cornwell2005} and current techniques require accurate source catalogs at the telescope resolution. We present an extension of the method from \citet{Pober2012} where they use beam symmetries to create a network of overlapping source tracks that break the degeneracy between source flux density and beam response and allow their simultaneous estimation. We fit the beam response of our instrument using early HERA observations and find that our results agree well with electromagnetic simulations down to a -20~dB level in power relative to peak gain for sources with high signal-to-noise ratio. In addition, we construct a source catalog with 90 sources down to a flux density of 1.4~Jy at 151~MHz., Comment: 22 pages, 22 figures, accepted for publication in ApJ

Characterizing the epoch of reionization (EoR) at $z\gtrsim 6$ via the redshifted 21 cm line of neutral Hydrogen (HI) is critical to modern astrophysics and cosmology, and thus a key science goal of many current and planned low-frequency radio telescopes. The primary challenge to detecting this signal is the overwhelmingly bright foreground emission at these frequencies, placing stringent requirements on the knowledge of the instruments and inaccuracies in analyses. Results from these experiments have largely been limited not by thermal sensitivity but by systematics, particularly caused by the inability to calibrate the instrument to high accuracy. The interferometric bispectrum phase is immune to antenna-based calibration and errors therein, and presents an independent alternative to detect the EoR HI fluctuations while largely avoiding calibration systematics. Here, we provide a demonstration of this technique on a subset of data from the Hydrogen Epoch of Reionization Array (HERA) to place approximate constraints on the brightness temperature of the intergalactic medium (IGM). From this limited data, at $z=7.7$ we infer "$1\sigma$" upper limits on the IGM brightness temperature to be $\le 316$ "pseudo" mK at $\kappa_\parallel=0.33$ "pseudo" $h$ Mpc$^{-1}$ (data-limited) and $\le 1000$ "pseudo" mK at $\kappa_\parallel=0.875$ "pseudo" $h$ Mpc$^{-1}$ (noise-limited). The "pseudo" units denote only an approximate and not an exact correspondence to the actual distance scales and brightness temperatures. By propagating models in parallel to the data analysis, we confirm that the dynamic range required to separate the cosmic HI signal from the foregrounds is similar to that in standard approaches, and the power spectrum of the bispectrum phase is still data-limited (at $\gtrsim 10^6$ dynamic range) indicating scope for further improvement in sensitivity as the array build-out continues., Comment: 22 pages, 12 figures (including sub-figures). Published in PhRvD. Abstract may be slightly abridged compared to the actual manuscript due to length limitations on arXiv

The key challenge in the observation of the redshifted 21-cm signal from cosmic reionization is its separation from the much brighter foreground emission. Such separation relies on the different spectral properties of the two components, although, in real life, the foreground intrinsic spectrum is often corrupted by the instrumental response, inducing systematic effects that can further jeopardize the measurement of the 21-cm signal. In this paper, we use Gaussian Process Regression to model both foreground emission and instrumental systematics in $\sim 2$ hours of data from the Hydrogen Epoch of Reionization Array. We find that a simple co-variance model with three components matches the data well, giving a residual power spectrum with white noise properties. These consist of an "intrinsic" and instrumentally corrupted component with a coherence-scale of 20 MHz and 2.4 MHz respectively (dominating the line of sight power spectrum over scales $k_{\parallel} \le 0.2$ h cMpc$^{-1}$) and a baseline dependent periodic signal with a period of $\sim 1$ MHz (dominating over $k_{\parallel} \sim 0.4 - 0.8$h cMpc$^{-1}$) which should be distinguishable from the 21-cm EoR signal whose typical coherence-scales is $\sim 0.8$ MHz., Comment: 15 pages, 15 figures, 1 table, Accepted to MNRAS

In 21 cm cosmology, precision calibration is key to the separation of the neutral hydrogen signal from very bright but spectrally-smooth astrophysical foregrounds. The Hydrogen Epoch of Reionization Array (HERA), an interferometer specialized for 21 cm cosmology and now under construction in South Africa, was designed to be largely calibrated using the self-consistency of repeated measurements of the same interferometric modes. This technique, known as "redundant-baseline calibration" resolves most of the internal degrees of freedom in the calibration problem. It assumes, however, on antenna elements with identical primary beams placed precisely on a redundant grid. In this work, we review the detailed implementation of the algorithms enabling redundant-baseline calibration and report results with HERA data. We quantify the effects of real-world non-redundancy and how they compare to the idealized scenario in which redundant measurements differ only in their noise realizations. Finally, we study how non-redundancy can produce spurious temporal structure in our calibration solutions--both in data and in simulations--and present strategies for mitigating that structure., Comment: 24 Pages, 19 Figures. Updated to match the accepted MNRAS version

We discuss absolute calibration strategies for Phase I of the Hydrogen Epoch of Reionization Array (HERA), which aims to measure the cosmological 21 cm signal from the Epoch of Reionization (EoR). HERA is a drift-scan array with a 10 degree wide field of view, meaning bright, well-characterized point source transits are scarce. This, combined with HERA's redundant sampling of the uv plane and the modest angular resolution of the Phase I instrument, make traditional sky-based and self-calibration techniques difficult to implement with high dynamic range. Nonetheless, in this work we demonstrate calibration for HERA using point source catalogues and electromagnetic simulations of its primary beam. We show that unmodeled diffuse flux and instrumental contaminants can corrupt the gain solutions, and present a gain smoothing approach for mitigating their impact on the 21 cm power spectrum. We also demonstrate a hybrid sky and redundant calibration scheme and compare it to pure sky-based calibration, showing only a marginal improvement to the gain solutions at intermediate delay scales. Our work suggests that the HERA Phase I system can be well-calibrated for a foreground-avoidance power spectrum estimator by applying direction-independent gains with a small set of degrees of freedom across the frequency and time axes., Comment: Accepted to ApJ

The recent demonstration of a real-time direct imaging radio interferometry correlator represents a new capability in radio astronomy. However wide field imaging with this method is challenging since wide-field effects and array non-coplanarity degrade image quality if not compensated for. Here we present an alternative direct imaging correlation strategy using a Direct Fourier Transform (DFT), modelled as a linear operator facilitating a matrix multiplication between the DFT matrix and a vector of the electric fields from each antenna. This offers perfect correction for wide field and non-coplanarity effects. When implemented with data from the Long Wavelength Array (LWA), it offers comparable computational performance to previously demonstrated direct imaging techniques, despite having a theoretically higher floating point cost. It also has additional benefits, such as imaging sparse arrays and control over which sky co-ordinates are imaged, allowing variable pixel placement across an image. It is in practice a highly flexible and efficient method of direct radio imaging when implemented on suitable arrays. A functioning Electric Field Direct imaging architecture using the DFT is presented, alongside an exploration of techniques for wide-field imaging similar to those in visibility based imaging, and an explanation of why they do not fit well to imaging directly with the digitized electric field data. The DFT imaging method is demonstrated on real data from the LWA telescope, alongside a detailed performance analysis, as well as an exploration of its applicability to other arrays., Comment: 12 pages, 8 figures, 2 tables. Accepted for publication in Monthly Notices of the Royal Astronomical Society

The detection of the Epoch of Reionization (EoR) delay power spectrum using a "foreground avoidance method" highly depends on the instrument chromaticity. The systematic effects induced by the radio-telescope spread the foreground signal in the delay domain, which contaminates the EoR window theoretically observable. Applied to the Hydrogen Epoch of Reionization Array (HERA), this paper combines detailed electromagnetic and electrical simulations in order to model the chromatic effects of the instrument, and quantify its frequency and time responses. In particular, the effects of the analogue receiver, transmission cables, and mutual coupling are included. These simulations are able to accurately predict the intensity of the reflections occurring in the 150-m cable which links the antenna to the back-end. They also show that electromagnetic waves can propagate from one dish to another one through large sections of the array due to mutual coupling. The simulated system time response is attenuated by a factor $10^{4}$ after a characteristic delay which depends on the size of the array and on the antenna position. Ultimately, the system response is attenuated by a factor $10^{5}$ after 1400 ns because of the reflections in the cable, which corresponds to characterizable ${k_\parallel}$-modes above 0.7 $h\;\rm{Mpc}^{-1}$ at 150 MHz. Thus, this new study shows that the detection of the EoR signal with HERA Phase I will be more challenging than expected. On the other hand, it improves our understanding of the telescope, which is essential to mitigate the instrument chromaticity., Comment: 13 pages, 17 figures - Submitted to MNRAS - 2nd revision

In radio interferometry imaging, the gridding procedure of convolving visibilities with a chosen gridding function is necessary to transform visibility values into uniformly sampled grid points. We propose here a parameterised family of "least-misfit gridding functions" which minimise an upper bound on the difference between the DFT and FFT dirty images for a given gridding support width and image cropping ratio. When compared with the widely used spheroidal function with similar parameters, these provide more than 100 times better alias suppression and RMS misfit reduction over the usable dirty map. We discuss how appropriate parameter selection and tabulation of these functions allow for a balance between accuracy, computational cost and storage size. Although it is possible to reduce the errors introduced in the gridding or degridding process to the level of machine precision, accuracy comparable to that achieved by CASA requires only a lookup table with 300 entries and a support width of 3, allowing for a greatly reduced computation cost for a given performance.

We present a technique to automatically minimise the re-computation when a data analysis program is iteratively changed, or added to, as is often the case in exploratory data analysis in astronomy. A typical example is flagging and calibration of demanding or unusual observations where visual inspection suggests improvement to the processing strategy. The technique is based on memoization and referentially transparent tasks. We describe the implementation of this technique for the CASA radio astronomy data reduction package. We also propose a technique for optimising efficiency of storage of memoized intermediate data products using copy-on-write and block level de-duplication and measure their practical efficiency. We find the minimal recomputation technique improves the efficiency of data analysis while reducing the possibility for user error and improving the reproducibility of the final result. It also aids exploratory data analysis on batch-schedule cluster computer systems., Comment: Accepted for publication in Astronomy and Computing. Software described in the paper is available at: http://www.mrao.cam.ac.uk/~bn204/sw/recipe . This refereed paper is an expanded version of the conference proceedings arxiv:1711.06124

In this article we consider simultaneous T-dualization of type II superstring action in pure spinor formulation. Simultaneous T-dualization means that we make T-dualization at the same time along some subset of initial coordinates marked by $x^a$. The only imposed assumption stems from the applicability of the Buscher T-dualization procedure - background fields do not depend on dualized directions $x^a$. In this way we obtain the full form of the T-dual background fields and T-dual transformation laws. Because two chiral sectors transform differently, there are two sets of vielbeins and gamma matrices connected by the local Lorentz transformation. Its spinorial representation is the same as in the constant background case. We also found the full expression for T-dual dilaton field., Comment: Comments on dilaton transformation added

Methods currently in use for locating and characterising sources in radio interferometry maps are designed for processing images, and require interferometric maps to be preprocessed so as to resemble conventional images. We demonstrate a Bayesian code - BaSC - that takes into account the interferometric visibility data despite working with more computationally manageable image domain data products. This method is better able to discriminate nearby sources than the commonly used SExtractor, and has potential even in more complicated cases. We also demonstrate the correctness of the Bayesian resolving formula for simulated data, and its implications for source discrimination at distances below the full width half maximum of the restoring beam., Comment: 8 pages, accepted by MNRAS

I show that a software framework intended primarily for training of neural networks, PyTorch, is easily applied to a general function minimisation problem in science. The qualities of PyTorch of ease-of-use and very high efficiency are found to be applicable in this domain and lead to two orders of magnitude improvement in time-to-solution with very small software engineering effort., Comment: 5 pages, 2 figures, 2 program listings. Full source code available at: https://github.com/bnikolic/oof/

Detecting neutral Hydrogen (H\,{\sc i}) via the 21~cm line emission from the intergalactic medium at $z\gtrsim 6$ has been identified as one of the most promising probes of the epoch of cosmic reionization -- a major phase transition of the Universe. However, these studies face severe challenges imposed by the bright foreground emission from cosmic objects. Current techniques require precise instrumental calibration to separate the weak H\,{\sc i} line signal from the foreground continuum emission. We propose to mitigate this calibration requirement by using measurements of the interferometric bi-spectrum phase. Bi-spectrum phase is unaffected by antenna-based direction-independent calibration errors and hence for a compact array it depends on the sky brightness distribution only (subject to the usual thermal-like noise). We show that the bi-spectrum phase of foreground synchrotron continuum has a characteristically smooth spectrum relative to the cosmological line signal. The two can be separated effectively by exploiting this spectral difference using Fourier techniques, while eliminating the need for precise antenna-based calibration of phases introduced by the instrument, and the ionosphere, inherent in existing approaches. Using fiducial models for continuum foregrounds, and for the cosmological H\,{\sc i} signal, we show the latter should be detectable in bi-spectrum phase spectra, with reasonable significance at $|k_\parallel| \gtrsim 0.5\,h$~Mpc$^{-1}$, using existing instruments. Our approach will also benefit other H\,{\sc i} intensity mapping experiments that face similar challenges, such as those measuring Baryon Acoustic Oscillations (BAO)., Comment: Accepted in Physical Review Letters. 8 pages (including 3 figures, references)

New massively redundant low frequency arrays allow for a novel investigation of closure relations in interferometry. We employ commissioning data from the Hydrogen Epoch of Reionization Array to investigate closure quantities in this densely packed grid array of 14m antennas operating at 100 MHz to 200 MHz. We investigate techniques that utilize closure phase spectra for redundant triads to estimate departures from redundancy for redundant baseline visibilities. We find a median absolute deviation from redundancy in closure phase across the observed frequency range of about 4.5deg. This value translates into a non-redundancy per visibility phase of about 2.6deg, using prototype electronics. The median absolute deviations from redundancy decrease with longer baselines. We show that closure phase spectra can be used to identify ill-behaved antennas in the array, independent of calibration. We investigate the temporal behavior of closure spectra. The Allan variance increases after a one minute stride time, due to passage of the sky through the primary beam of the transit telescope. However, the closure spectra repeat to well within the noise per measurement at corresponding local sidereal times (LST) from day to day. In future papers in this series we will develop the technique of using closure phase spectra in the search for the HI 21cm signal from cosmic reionization., Comment: 32 pages. 11 figures. Accepted to Radio Science