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1. The Past, Present, and Future of the Brain Imaging Data Structure (BIDS)

Author

Poldrack, Russell A., Markiewicz, Christopher J., Appelhoff, Stefan, Ashar, Yoni K., Auer, Tibor, Baillet, Sylvain, Bansal, Shashank, Beltrachini, Leandro, Benar, Christian G., Bertazzoli, Giacomo, Bhogawar, Suyash, Blair, Ross W., Bortoletto, Marta, Boudreau, Mathieu, Brooks, Teon L., Calhoun, Vince D., Castelli, Filippo Maria, Clement, Patricia, Cohen, Alexander L, Cohen-Adad, Julien, D'Ambrosio, Sasha, de Hollander, Gilles, de la iglesia-Vayá, María, de la Vega, Alejandro, Delorme, Arnaud, Devinsky, Orrin, Draschkow, Dejan, Duff, Eugene Paul, DuPre, Elizabeth, Earl, Eric, Esteban, Oscar, Feingold, Franklin W., Flandin, Guillaume, galassi, anthony, Gallitto, Giuseppe, Ganz, Melanie, Gau, Rémi, Gholam, James, Ghosh, Satrajit S., Giacomel, Alessio, Gillman, Ashley G, Gleeson, Padraig, Gramfort, Alexandre, Guay, Samuel, Guidali, Giacomo, Halchenko, Yaroslav O., Handwerker, Daniel A., Hardcastle, Nell, Herholz, Peer, Hermes, Dora, Honey, Christopher J., Innis, Robert B., Ioanas, Horea-Ioan, Jahn, Andrew, Karakuzu, Agah, Keator, David B., Kiar, Gregory, Kincses, Balint, Laird, Angela R., Lau, Jonathan C., Lazari, Alberto, Legarreta, Jon Haitz, Li, Adam, Li, Xiangrui, Love, Bradley C., Lu, Hanzhang, Maumet, Camille, Mazzamuto, Giacomo, Meisler, Steven L., Mikkelsen, Mark, Mutsaerts, Henk, Nichols, Thomas E., Nikolaidis, Aki, Nilsonne, Gustav, Niso, Guiomar, Norgaard, Martin, Okell, Thomas W, Oostenveld, Robert, Ort, Eduard, Park, Patrick J., Pawlik, Mateusz, Pernet, Cyril R., Pestilli, Franco, Petr, Jan, Phillips, Christophe, Poline, Jean-Baptiste, Pollonini, Luca, Raamana, Pradeep Reddy, Ritter, Petra, Rizzo, Gaia, Robbins, Kay A., Rockhill, Alexander P., Rogers, Christine, Rokem, Ariel, Rorden, Chris, Routier, Alexandre, Saborit-Torres, Jose Manuel, Salo, Taylor, Schirner, Michael, Smith, Robert E., Spisak, Tamas, Sprenger, Julia, Swann, Nicole C., Szinte, Martin, Takerkart, Sylvain, Thirion, Bertrand, Thomas, Adam G., Torabian, Sajjad, Varoquaux, Gael, Voytek, Bradley, Welzel, Julius, Wilson, Martin, Yarkoni, Tal, and Gorgolewski, Krzysztof J.

Subjects
Quantitative Biology - Other Quantitative Biology
Abstract

The Brain Imaging Data Structure (BIDS) is a community-driven standard for the organization of data and metadata from a growing range of neuroscience modalities. This paper is meant as a history of how the standard has developed and grown over time. We outline the principles behind the project, the mechanisms by which it has been extended, and some of the challenges being addressed as it evolves. We also discuss the lessons learned through the project, with the aim of enabling researchers in other domains to learn from the success of BIDS.

Published
2023
Full Text
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2. CRISIS AFAR: an international collaborative study of the impact of the COVID-19 pandemic on mental health and service access in youth with autism and neurodevelopmental conditions

Author

Vibert, Bethany, Segura, Patricia, Gallagher, Louise, Georgiades, Stelios, Pervanidou, Panagiota, Thurm, Audrey, Alexander, Lindsay, Anagnostou, Evdokia, Aoki, Yuta, Birken, Catherine S, Bishop, Somer L, Boi, Jessica, Bravaccio, Carmela, Brentani, Helena, Canevini, Paola, Carta, Alessandra, Charach, Alice, Costantino, Antonella, Cost, Katherine T, Cravo, Elaine A, Crosbie, Jennifer, Davico, Chiara, Donno, Federica, Fujino, Junya, Gabellone, Alessandra, Geyer, Cristiane T, Hirota, Tomoya, Kanne, Stephen, Kawashima, Makiko, Kelley, Elizabeth, Kim, Hosanna, Kim, Young Shin, Kim, So Hyun, Korczak, Daphne J, Lai, Meng-Chuan, Margari, Lucia, Marzulli, Lucia, Masi, Gabriele, Mazzone, Luigi, McGrath, Jane, Monga, Suneeta, Morosini, Paola, Nakajima, Shinichiro, Narzisi, Antonio, Nicolson, Rob, Nikolaidis, Aki, Noda, Yoshihiro, Nowell, Kerri, Polizzi, Miriam, Portolese, Joana, Riccio, Maria Pia, Saito, Manabu, Schwartz, Ida, Simhal, Anish K, Siracusano, Martina, Sotgiu, Stefano, Stroud, Jacob, Sumiya, Fernando, Tachibana, Yoshiyuki, Takahashi, Nicole, Takahashi, Riina, Tamon, Hiroki, Tancredi, Raffaella, Vitiello, Benedetto, Zuddas, Alessandro, Leventhal, Bennett, Merikangas, Kathleen, Milham, Michael P, and Di Martino, Adriana

Subjects
Biological Psychology, Psychology, Brain Disorders, Pediatric, Intellectual and Developmental Disabilities (IDD), Mental Health, Autism, Neurosciences, Mental health, Good Health and Well Being, Female, Humans, Adolescent, Child, COVID-19, Autistic Disorder, Pandemics, Autism Spectrum Disorder, Cross-Sectional Studies, Mental health outcomes, Autism spectrum disorder, Neurodevelopmental conditions, Sleep, Behavioral problems, Prediction, Risk and resilience factors, COVID-19 pandemic, Public health, Clinical Sciences, Clinical sciences, Biological psychology
Abstract

BackgroundHeterogeneous mental health outcomes during the COVID-19 pandemic are documented in the general population. Such heterogeneity has not been systematically assessed in youth with autism spectrum disorder (ASD) and related neurodevelopmental disorders (NDD). To identify distinct patterns of the pandemic impact and their predictors in ASD/NDD youth, we focused on pandemic-related changes in symptoms and access to services.MethodsUsing a naturalistic observational design, we assessed parent responses on the Coronavirus Health and Impact Survey Initiative (CRISIS) Adapted For Autism and Related neurodevelopmental conditions (AFAR). Cross-sectional AFAR data were aggregated across 14 European and North American sites yielding a clinically well-characterized sample of N = 1275 individuals with ASD/NDD (age = 11.0 ± 3.6 years; n females = 277). To identify subgroups with differential outcomes, we applied hierarchical clustering across eleven variables measuring changes in symptoms and access to services. Then, random forest classification assessed the importance of socio-demographics, pre-pandemic service rates, clinical severity of ASD-associated symptoms, and COVID-19 pandemic experiences/environments in predicting the outcome subgroups.ResultsClustering revealed four subgroups. One subgroup-broad symptom worsening only (20%)-included youth with worsening across a range of symptoms but with service disruptions similar to the average of the aggregate sample. The other three subgroups were, relatively, clinically stable but differed in service access: primarily modified services (23%), primarily lost services (6%), and average services/symptom changes (53%). Distinct combinations of a set of pre-pandemic services, pandemic environment (e.g., COVID-19 new cases, restrictions), experiences (e.g., COVID-19 Worries), and age predicted each outcome subgroup.LimitationsNotable limitations of the study are its cross-sectional nature and focus on the first six months of the pandemic.ConclusionsConcomitantly assessing variation in changes of symptoms and service access during the first phase of the pandemic revealed differential outcome profiles in ASD/NDD youth. Subgroups were characterized by distinct prediction patterns across a set of pre- and pandemic-related experiences/contexts. Results may inform recovery efforts and preparedness in future crises; they also underscore the critical value of international data-sharing and collaborations to address the needs of those most vulnerable in times of crisis.

Published
2023

5. Centering inclusivity in the design of online conferences—An OHBM–Open Science perspective

Author

Levitis, Elizabeth, van Praag, Cassandra D Gould, Gau, Rémi, Heunis, Stephan, DuPre, Elizabeth, Kiar, Gregory, Bottenhorn, Katherine L, Glatard, Tristan, Nikolaidis, Aki, Whitaker, Kirstie Jane, Mancini, Matteo, Niso, Guiomar, Afyouni, Soroosh, Alonso-Ortiz, Eva, Appelhoff, Stefan, Arnatkeviciute, Aurina, Atay, Selim Melvin, Auer, Tibor, Baracchini, Giulia, Bayer, Johanna MM, Beauvais, Michael JS, Bijsterbosch, Janine D, Bilgin, Isil P, Bollmann, Saskia, Bollmann, Steffen, Botvinik-Nezer, Rotem, Bright, Molly G, Calhoun, Vince D, Chen, Xiao, Chopra, Sidhant, Chuan-Peng, Hu, Close, Thomas G, Cookson, Savannah L, Craddock, R Cameron, De La Vega, Alejandro, De Leener, Benjamin, Demeter, Damion V, Di Maio, Paola, Dickie, Erin W, Eickhoff, Simon B, Esteban, Oscar, Finc, Karolina, Frigo, Matteo, Ganesan, Saampras, Ganz, Melanie, Garner, Kelly G, Garza-Villarreal, Eduardo A, Gonzalez-Escamilla, Gabriel, Goswami, Rohit, Griffiths, John D, Grootswagers, Tijl, Guay, Samuel, Guest, Olivia, Handwerker, Daniel A, Herholz, Peer, Heuer, Katja, Huijser, Dorien C, Iacovella, Vittorio, Joseph, Michael JE, Karakuzu, Agah, Keator, David B, Kobeleva, Xenia, Kumar, Manoj, Laird, Angela R, Larson-Prior, Linda J, Lautarescu, Alexandra, Lazari, Alberto, Legarreta, Jon Haitz, Li, Xue-Ying, Lv, Jinglei, L., Sina Mansour, Meunier, David, Moraczewski, Dustin, Nandi, Tulika, Nastase, Samuel A, Nau, Matthias, Noble, Stephanie, Norgaard, Martin, Obungoloch, Johnes, Oostenveld, Robert, Orchard, Edwina R, Pinho, Ana Luísa, Poldrack, Russell A, Qiu, Anqi, Raamana, Pradeep Reddy, Rokem, Ariel, Rutherford, Saige, Sharan, Malvika, Shaw, Thomas B, Syeda, Warda T, Testerman, Meghan M, Toro, Roberto, Valk, Sofie L, Van Den Bossche, Sofie, Varoquaux, Gaël, Váša, František, Veldsman, Michele, Vohryzek, Jakub, Wagner, Adina S, and Walsh, Reubs J

Subjects
online conferences, diversity, inclusivity, open science, collaborative events
Abstract

As the global health crisis unfolded, many academic conferences moved online in 2020. This move has been hailed as a positive step towards inclusivity in its attenuation of economic, physical, and legal barriers and effectively enabled many individuals from groups that have traditionally been underrepresented to join and participate. A number of studies have outlined how moving online made it possible to gather a more global community and has increased opportunities for individuals with various constraints, e.g., caregiving responsibilities. Yet, the mere existence of online conferences is no guarantee that everyone can attend and participate meaningfully. In fact, many elements of an online conference are still significant barriers to truly diverse participation: the tools used can be inaccessible for some individuals; the scheduling choices can favour some geographical locations; the set-up of the conference can provide more visibility to well-established researchers and reduce opportunities for early-career researchers. While acknowledging the benefits of an online setting, especially for individuals who have traditionally been underrepresented or excluded, we recognize that fostering social justice requires inclusivity to actively be centered in every aspect of online conference design. Here, we draw from the literature and from our own experiences to identify practices that purposefully encourage a diverse community to attend, participate in, and lead online conferences. Reflecting on how to design more inclusive online events is especially important as multiple scientific organizations have announced that they will continue offering an online version of their event when in-person conferences can resume.

Published
2021

6. Brainhack: Developing a culture of open, inclusive, community-driven neuroscience

Author

Gau, Rémi, Noble, Stephanie, Heuer, Katja, Bottenhorn, Katherine L, Bilgin, Isil P, Yang, Yu-Fang, Huntenburg, Julia M, Bayer, Johanna MM, Bethlehem, Richard AI, Rhoads, Shawn A, Vogelbacher, Christoph, Borghesani, Valentina, Levitis, Elizabeth, Wang, Hao-Ting, Van Den Bossche, Sofie, Kobeleva, Xenia, Legarreta, Jon Haitz, Guay, Samuel, Atay, Selim Melvin, Varoquaux, Gael P, Huijser, Dorien C, Sandström, Malin S, Herholz, Peer, Nastase, Samuel A, Badhwar, AmanPreet, Dumas, Guillaume, Schwab, Simon, Moia, Stefano, Dayan, Michael, Bassil, Yasmine, Brooks, Paula P, Mancini, Matteo, Shine, James M, O’Connor, David, Xie, Xihe, Poggiali, Davide, Friedrich, Patrick, Heinsfeld, Anibal S, Riedl, Lydia, Toro, Roberto, Caballero-Gaudes, César, Eklund, Anders, Garner, Kelly G, Nolan, Christopher R, Demeter, Damion V, Barrios, Fernando A, Merchant, Junaid S, McDevitt, Elizabeth A, Oostenveld, Robert, Craddock, R Cameron, Rokem, Ariel, Doyle, Andrew, Ghosh, Satrajit S, Nikolaidis, Aki, Stanley, Olivia W, Uruñuela, Eneko, Community, The Brainhack, Anousheh, Nasim, Arnatkeviciute, Aurina, Auzias, Guillaume, Bachar, Dipankar, Bannier, Elise, Basanisi, Ruggero, Basavaraj, Arshitha, Bedini, Marco, Bellec, Pierre, Benn, R Austin, Berluti, Kathryn, Bollmann, Steffen, Bollmann, Saskia, Bradley, Claire, Brown, Jesse, Buchweitz, Augusto, Callahan, Patrick, Chan, Micaela Y, Chandio, Bramsh Q, Cheng, Theresa, Chopra, Sidhant, Chung, Ai Wern, Close, Thomas G, Combrisson, Etienne, Cona, Giorgia, Constable, R Todd, Cury, Claire, Dadi, Kamalaker, Damasceno, Pablo F, Das, Samir, De Vico Fallani, Fabrizio, DeStasio, Krista, Dickie, Erin W, Dorfschmidt, Lena, Duff, Eugene P, DuPre, Elizabeth, Dziura, Sarah, Esper, Nathalia B, Esteban, Oscar, Fadnavis, Shreyas, Flandin, Guillaume, Flannery, Jessica E, and Flournoy, John

Subjects
Biological Psychology, Biomedical and Clinical Sciences, Neurosciences, Psychology, Communication, Congresses as Topic, Internet, Practice Guidelines as Topic, Brainhack Community, Brainhack, best practices, collaboration, community building, hackathon, inclusivity, neuroscience, open science, reproducibility, training, Cognitive Sciences, Neurology & Neurosurgery, Biological psychology
Abstract

Brainhack is an innovative meeting format that promotes scientific collaboration and education in an open, inclusive environment. This NeuroView describes the myriad benefits for participants and the research community and how Brainhacks complement conventional formats to augment scientific progress.

Published
2021

7. Training Humans and Machines

Author

Nikolaidis, Aki

Subjects
Computer Science - Neural and Evolutionary Computing, Computer Science - Machine Learning
Abstract

For many years, researchers in psychology, education, statistics, and machine learning have been developing practical methods to improve learning speed, retention, and generalizability, and this work has been successful. Many of these methods are rooted in common underlying principles that seem to drive learning and overlearning in both humans and machines. I present a review of a small part of this work to point to potentially novel applications in both machine and human learning that may be worth exploring., Comment: 4 pages, Computational Cognitive Neuroscience

Published
2018

8. Ten Simple Rules for ​​​​Open Health Research

Author

Bafeta, Aïda, Bobe, Jason, Clucas, Jon, Gonsalves, Pattie Pramila, Gruson-Daniel, Célya, Hudson, Kathy, Klein, Arno, Krishnakumar, Anirudh, McCollister-Slipp, Anna, Lindner, Ariel, Misevic, Dusan, Naslund, John, Nebeker, Camille, Nikolaidis, Aki, Pasquetto, Irene, Sanchez, Gabriela, Schapira, Matthieu, Scheininger, Tohar, Schoeller, Félix, Sólon, Anibal, and Taddei, François

Published
2019

10. Translation and Initial Psychometric Evaluation of Spanish Versions of Three Psychedelic Acute Effects Measures: Mystical, Challenging, and Insight Experiences.

Author

Davis, Alan K., Timmermann, Christopher, Ortiz Bernal, Ana Maria, Lancelotta, Rafaelle, Nayak, Sandeep, Sepeda, Nathan D., Nikolaidis, Aki, and Griffiths, Roland R.

Subjects
CONFIRMATORY factor analysis, PSYCHOMETRICS, FACTOR structure, TEST validity, PROSOCIAL behavior
Abstract

This study translated and tested the psychometric properties of acute psychedelic effects measures among Spanish-speaking people. The Psychological Insight Questionnaire (PIQ), Challenging Experiences Questionnaire (CEQ), and Mystical Experiences Questionnaire (MEQ) were translated before being incorporated into a web-based survey. We recruited native Spanish-speakers (N = 442; Mage = 30.8, SD = 10.9; Latino/Latina = 62%; Hispanic = 91.4%; male = 71.5%) to assess their previous experience with one of two psychedelics (LSD = 58.4%; Psilocybin = 41.6%) and their acute and enduring effects. Confirmatory factor analysis (confirming factor structure based on the English version) revealed a good fit for the MEQ, PIQ and the CEQ. Repeating our analysis in each drug subsample revealed consistency in factor structure for each assessment tool. Construct validity was supported by significant positive associations between the PIQ and MEQ, and between the PIQ and MEQ and changes in cognitive fusion and negative associations between changes in prosocial behaviors. As a signal of predictive validity, persisting effects (PEQ) were strongly related to scores on the MEQ and PIQ. Findings demonstrate that the Spanish versions of these measures can be reliably employed in studies of psychedelic use or administration in Spanish-speaking populations. [ABSTRACT FROM AUTHOR]

Published
2024
Full Text
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12. The Past, Present, and Future of the Brain Imaging Data Structure (BIDS)

Author

Poldrack, R, Markiewicz, C, Appelhoff, S, Ashar, Y, Auer, T, Baillet, S, Bansal, S, Beltrachini, L, Benar, C, Bertazzoli, G, Bhogawar, S, Blair, R, Bortoletto, M, Boudreau, M, Brooks, T, Calhoun, V, Castelli, F, Clement, P, Cohen, A, Cohen-Adad, J, D'Ambrosio, S, de Hollander, G, de la Iglesia-Vayá, M, de la Vega, A, Delorme, A, Devinsky, O, Draschkow, D, Duff, E, Dupre, E, Earl, E, Esteban, O, Feingold, F, Flandin, G, Galassi, A, Gallitto, G, Ganz, M, Gau, R, Gholam, J, Ghosh, S, Giacomel, A, Gillman, A, Gleeson, P, Gramfort, A, Guay, S, Guidali, G, Halchenko, Y, Handwerker, D, Hardcastle, N, Herholz, P, Hermes, D, Honey, C, Innis, R, Ioanas, H, Jahn, A, Karakuzu, A, Keator, D, Kiar, G, Kincses, B, Laird, A, Lau, J, Lazari, A, Legarreta, J, Li, A, Li, X, Love, B, Lu, H, Marcantoni, E, Maumet, C, Mazzamuto, G, Meisler, S, Mikkelsen, M, Mutsaerts, H, Nichols, T, Nikolaidis, A, Nilsonne, G, Niso, G, Norgaard, M, Okell, T, Oostenveld, R, Ort, E, Park, P, Pawlik, M, Pernet, C, Pestilli, F, Petr, J, Phillips, C, Poline, J, Pollonini, L, Raamana, P, Ritter, P, Rizzo, G, Robbins, K, Rockhill, A, Rogers, C, Rokem, A, Rorden, C, Routier, A, Saborit-Torres, J, Salo, T, Schirner, M, Smith, R, Spisak, T, Sprenger, J, Swann, N, Szinte, M, Takerkart, S, Thirion, B, Thomas, A, Torabian, S, Varoquaux, G, Voytek, B, Welzel, J, Wilson, M, Yarkoni, T, Gorgolewski, K, Poldrack, Russell A., Markiewicz, Christopher J., Appelhoff, Stefan, Ashar, Yoni K., Auer, Tibor, Baillet, Sylvain, Bansal, Shashank, Beltrachini, Leandro, Benar, Christian G., Bertazzoli, Giacomo, Bhogawar, Suyash, Blair, Ross W., Bortoletto, Marta, Boudreau, Mathieu, Brooks, Teon L., Calhoun, Vince D., Castelli, Filippo Maria, Clement, Patricia, Cohen, Alexander L., Cohen-Adad, Julien, D'Ambrosio, Sasha, de Hollander, Gilles, de la Iglesia-Vayá, María, de la Vega, Alejandro, Delorme, Arnaud, Devinsky, Orrin, Draschkow, Dejan, Duff, Eugene Paul, DuPre, Elizabeth, Earl, Eric, Esteban, Oscar, Feingold, Franklin W., Flandin, Guillaume, Galassi, Anthony, Gallitto, Giuseppe, Ganz, Melanie, Gau, Rémi, Gholam, James, Ghosh, Satrajit S., Giacomel, Alessio, Gillman, Ashley G., Gleeson, Padraig, Gramfort, Alexandre, Guay, Samuel, Guidali, Giacomo, Halchenko, Yaroslav O., Handwerker, Daniel A., Hardcastle, Nell, Herholz, Peer, Hermes, Dora, Honey, Christopher J., Innis, Robert B., Ioanas, Horea-Ioan, Jahn, Andrew, Karakuzu, Agah, Keator, David B., Kiar, Gregory, Kincses, Balint, Laird, Angela R., Lau, Jonathan C., Lazari, Alberto, Legarreta, Jon Haitz, Li, Adam, Li, Xiangrui, Love, Bradley C., Lu, Hanzhang, Marcantoni, Eleonora, Maumet, Camille, Mazzamuto, Giacomo, Meisler, Steven L., Mikkelsen, Mark, Mutsaerts, Henk, Nichols, Thomas E., Nikolaidis, Aki, Nilsonne, Gustav, Niso, Guiomar, Norgaard, Martin, Okell, Thomas W., Oostenveld, Robert, Ort, Eduard, Park, Patrick J., Pawlik, Mateusz, Pernet, Cyril R., Pestilli, Franco, Petr, Jan, Phillips, Christophe, Poline, Jean-Baptiste, Pollonini, Luca, Raamana, Pradeep Reddy, Ritter, Petra, Rizzo, Gaia, Robbins, Kay A., Rockhill, Alexander P., Rogers, Christine, Rokem, Ariel, Rorden, Chris, Routier, Alexandre, Saborit-Torres, Jose Manuel, Salo, Taylor, Schirner, Michael, Smith, Robert E., Spisak, Tamas, Sprenger, Julia, Swann, Nicole C., Szinte, Martin, Takerkart, Sylvain, Thirion, Bertrand, Thomas, Adam G., Torabian, Sajjad, Varoquaux, Gael, Voytek, Bradley, Welzel, Julius, Wilson, Martin, Yarkoni, Tal, Gorgolewski, Krzysztof J., Poldrack, R, Markiewicz, C, Appelhoff, S, Ashar, Y, Auer, T, Baillet, S, Bansal, S, Beltrachini, L, Benar, C, Bertazzoli, G, Bhogawar, S, Blair, R, Bortoletto, M, Boudreau, M, Brooks, T, Calhoun, V, Castelli, F, Clement, P, Cohen, A, Cohen-Adad, J, D'Ambrosio, S, de Hollander, G, de la Iglesia-Vayá, M, de la Vega, A, Delorme, A, Devinsky, O, Draschkow, D, Duff, E, Dupre, E, Earl, E, Esteban, O, Feingold, F, Flandin, G, Galassi, A, Gallitto, G, Ganz, M, Gau, R, Gholam, J, Ghosh, S, Giacomel, A, Gillman, A, Gleeson, P, Gramfort, A, Guay, S, Guidali, G, Halchenko, Y, Handwerker, D, Hardcastle, N, Herholz, P, Hermes, D, Honey, C, Innis, R, Ioanas, H, Jahn, A, Karakuzu, A, Keator, D, Kiar, G, Kincses, B, Laird, A, Lau, J, Lazari, A, Legarreta, J, Li, A, Li, X, Love, B, Lu, H, Marcantoni, E, Maumet, C, Mazzamuto, G, Meisler, S, Mikkelsen, M, Mutsaerts, H, Nichols, T, Nikolaidis, A, Nilsonne, G, Niso, G, Norgaard, M, Okell, T, Oostenveld, R, Ort, E, Park, P, Pawlik, M, Pernet, C, Pestilli, F, Petr, J, Phillips, C, Poline, J, Pollonini, L, Raamana, P, Ritter, P, Rizzo, G, Robbins, K, Rockhill, A, Rogers, C, Rokem, A, Rorden, C, Routier, A, Saborit-Torres, J, Salo, T, Schirner, M, Smith, R, Spisak, T, Sprenger, J, Swann, N, Szinte, M, Takerkart, S, Thirion, B, Thomas, A, Torabian, S, Varoquaux, G, Voytek, B, Welzel, J, Wilson, M, Yarkoni, T, Gorgolewski, K, Poldrack, Russell A., Markiewicz, Christopher J., Appelhoff, Stefan, Ashar, Yoni K., Auer, Tibor, Baillet, Sylvain, Bansal, Shashank, Beltrachini, Leandro, Benar, Christian G., Bertazzoli, Giacomo, Bhogawar, Suyash, Blair, Ross W., Bortoletto, Marta, Boudreau, Mathieu, Brooks, Teon L., Calhoun, Vince D., Castelli, Filippo Maria, Clement, Patricia, Cohen, Alexander L., Cohen-Adad, Julien, D'Ambrosio, Sasha, de Hollander, Gilles, de la Iglesia-Vayá, María, de la Vega, Alejandro, Delorme, Arnaud, Devinsky, Orrin, Draschkow, Dejan, Duff, Eugene Paul, DuPre, Elizabeth, Earl, Eric, Esteban, Oscar, Feingold, Franklin W., Flandin, Guillaume, Galassi, Anthony, Gallitto, Giuseppe, Ganz, Melanie, Gau, Rémi, Gholam, James, Ghosh, Satrajit S., Giacomel, Alessio, Gillman, Ashley G., Gleeson, Padraig, Gramfort, Alexandre, Guay, Samuel, Guidali, Giacomo, Halchenko, Yaroslav O., Handwerker, Daniel A., Hardcastle, Nell, Herholz, Peer, Hermes, Dora, Honey, Christopher J., Innis, Robert B., Ioanas, Horea-Ioan, Jahn, Andrew, Karakuzu, Agah, Keator, David B., Kiar, Gregory, Kincses, Balint, Laird, Angela R., Lau, Jonathan C., Lazari, Alberto, Legarreta, Jon Haitz, Li, Adam, Li, Xiangrui, Love, Bradley C., Lu, Hanzhang, Marcantoni, Eleonora, Maumet, Camille, Mazzamuto, Giacomo, Meisler, Steven L., Mikkelsen, Mark, Mutsaerts, Henk, Nichols, Thomas E., Nikolaidis, Aki, Nilsonne, Gustav, Niso, Guiomar, Norgaard, Martin, Okell, Thomas W., Oostenveld, Robert, Ort, Eduard, Park, Patrick J., Pawlik, Mateusz, Pernet, Cyril R., Pestilli, Franco, Petr, Jan, Phillips, Christophe, Poline, Jean-Baptiste, Pollonini, Luca, Raamana, Pradeep Reddy, Ritter, Petra, Rizzo, Gaia, Robbins, Kay A., Rockhill, Alexander P., Rogers, Christine, Rokem, Ariel, Rorden, Chris, Routier, Alexandre, Saborit-Torres, Jose Manuel, Salo, Taylor, Schirner, Michael, Smith, Robert E., Spisak, Tamas, Sprenger, Julia, Swann, Nicole C., Szinte, Martin, Takerkart, Sylvain, Thirion, Bertrand, Thomas, Adam G., Torabian, Sajjad, Varoquaux, Gael, Voytek, Bradley, Welzel, Julius, Wilson, Martin, Yarkoni, Tal, and Gorgolewski, Krzysztof J.

Abstract

The Brain Imaging Data Structure (BIDS) is a community-driven standard for the organization of data and metadata from a growing range of neuroscience modalities. This paper is meant as a history of how the standard has developed and grown over time. We outline the principles behind the project, the mechanisms by which it has been extended, and some of the challenges being addressed as it evolves. We also discuss the lessons learned through the project, with the aim of enabling researchers in other domains to learn from the success of BIDS.

Published
2024

15. Standardizing human brain parcellations

Author

Lawrence, Ross M., Bridgeford, Eric W., Myers, Patrick E., Arvapalli, Ganesh C., Ramachandran, Sandhya C., Pisner, Derek A., Frank, Paige F., Lemmer, Allison D., Nikolaidis, Aki, and Vogelstein, Joshua T.

Published
2021
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20. Developmental deviation in delay discounting as a transdiagnostic indicator of risk for child psychopathology.

Author

DeRosa, Jacob, Rosch, Keri S., Mostofsky, Stewart H., and Nikolaidis, Aki

Subjects
PSYCHIATRIC diagnosis, DELAY discounting (Psychology), DEVELOPMENTAL disabilities, COGNITION, RISK assessment, SOCIOECONOMIC factors, INCOME, BEHAVIOR disorders in children, ATTENTION-deficit hyperactivity disorder, ACADEMIC achievement, PATHOLOGICAL psychology, CHILD psychopathology, LEARNING disabilities, INTELLECT, RESEARCH funding, EMOTION regulation, ANXIETY disorders, MENTAL illness, CHILDREN, ADOLESCENCE
Abstract

Background: The tendency to prefer smaller, immediate rewards over larger, delayed rewards is known as delay discounting (DD). Developmental deviations in DD may be key in characterizing psychiatric and neurodevelopmental disorders. Recent work empirically supported DD as a transdiagnostic process in various psychiatric disorders. Yet, there is a lack of research relating developmental changes in DD from mid‐childhood to adolescence to psychiatric and neurodevelopmental disorders. Additionally, examining the interplay between socioeconomic status/total household income (THI) and psychiatric symptoms is vital for a more comprehensive understanding of pediatric pathology and its complex relationship with DD. Methods: The current study addresses this gap in a robust psychiatric sample of 1843 children and adolescents aged 5–18 (M = 10.6, SD = 3.17; 1,219 males, 624 females). General additive models (GAMs) characterized the shape of age‐related changes in monetary and food reward discounting for nine psychiatric disorders compared with neurotypical youth (NT; n = 123). Over 40% of our sample possessed a minimum of at least three psychiatric or neurodevelopmental disorders. We used bootstrap‐enhanced Louvain community detection to map DD‐related comorbidity patterns. We derived five subtypes based on diagnostic categories present in our sample. DD patterns were then compared across each of the subtypes. Further, we evaluated the effect of cognitive ability, emotional and behavioral problems, and THI in relation to DD across development. Results: Higher discounting was found in six of the nine disorders we examined relative to NT. DD was consistently elevated across development for most disorders, except for depressive disorders, with age‐specific DD differences compared with NTs. Community detection analyses revealed that one comorbidity subtype consisting primarily of Attention‐Deficit/Hyperactivity Disorder (ADHD) Combined Presentation and anxiety disorders displayed the highest overall emotional/behavioral problems and greater DD for the food reward. An additional subtype composed mainly of ADHD, predominantly Inattentive Presentation, learning, and developmental disorders, showed the greatest DD for food and monetary rewards compared with the other subtypes. This subtype had deficits in reasoning ability, evidenced by low cognitive and academic achievement performance. For this ADHD‐I and developmental disorders subtype, THI was related to DD across the age span such that participants with high THI showed no differences in DD compared with NTs. In contrast, participants with low THI showed significantly worse DD trajectories than all others. Our results also support prior work showing that DD follows nonlinear developmental patterns. Conclusions: We demonstrate preliminary evidence for DD as a transdiagnostic marker of psychiatric and neurodevelopmental disorders in children and adolescents. Comorbidity subtypes illuminate DD heterogeneity, facilitating the identification of high‐risk individuals. Importantly, our findings revealed a marked link between DD and intellectual reasoning, with children from lower‐income households exhibiting lower reasoning skills and heightened DD. These observations underscore the potential consequences of compromised self‐regulation in economically disadvantaged individuals with these disorders, emphasizing the need for tailored interventions and further research to support improved outcomes. [ABSTRACT FROM AUTHOR]

Published
2024
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22. The Past, Present, and Future of the Brain Imaging Data Structure (BIDS)

Author

National Institutes of Health (US), National Science Foundation (US), Novo Nordisk Foundation, European Research Council, German Research Foundation, Charité - Universitätsmedizin Berlin, Agence Nationale de la Recherche (France), Poldrack, Russell A., Markiewicz, Christopher J., Appelhoff, Stefan, Ashar, Yoni K., Auer, Tibor, Baillet, Sylvain, Bansal, Shashank, Beltrachini, Leandro, Benar, Christian G., Bertazzoli, Giacomo, Bhogawar, Suyash, Laird, Angela R., Lau, Jonathan C., Lazari, Alberto, Legarreta, Jon Haitz, Li, Adam, Li, Xiangrui, Love, Bradley C., Lu, Hanzhang, Maumet, Camille, Mazzamuto, Giacomo, Nikolaidis, Aki, Meisler, Steven L., Mikkelsen, Mark, Mutsaerts, Henk, Nichols, Thomas E., Nilsonne, Gustav, Niso, Guiomar, Norgaard, Martin, Okell, Thomas W, Oostenveld, Robert, Ort, Eduard, Park, Patrick J., Pawlik, Mateusz, Pernet, Cyril R., Pollonini, Luca, Pestilli, Franco, Petr, Jan, Phillips, Christophe, Poline, Jean-Baptiste, Reddy Raamana, Pradeep, Ritter, Petra, Rizzo, Gaia, Robbins, Kay A., Rockhill, Alexander P., Rogers, Christine, Rokem, Ariel, Rorden, Chris, Routier, Alexandre, Spisak, Tamas, Saborit-Torres, Jose Manuel, Salo, Taylor, Schirner, Michael, Smith, Robert E., Sprenger, Julia, Swann, Nicole C., Szinte, Martin, Takerkart, Sylvain, Thirion, Bertrand, Thomas, Adam G., Torabian, Sajjad, Varoquaux, Gael, Voytek, Bradley, Blair, Ross W., Welzel, Julius, Wilson, Martin, Yarkoni, Tal, Gorgolewski, Krzysztof J., Bortoletto, Marta, Boudreau, Mathieu, Brooks, Teon L., Calhoun, Vince D., Castelli, Filippo Maria, Clement, Patricia, Cohen, Alexander L, Cohen-Adad, Julien, D'Ambrosio, Sasha, Hollander, D'Ambrosio, iglesia-Vayá, María de la, Vega, Alejandro de la, Delorme, Arnaud, Devinsky, Orrin, Draschkow, Dejan, Paul Duff, Eugene, DuPre, Elizabeth, Earl, Eric, Esteban, Oscar, Feingold, Franklin W., Flandin, Guillaume, Galassi, Anthony, Gallitto, Giuseppe, Ganz, Melanie, Gau, Rémi, Gholam, James, Ghosh, Satrajit S., Giacomel, Alessio, Gillman, Ashley G, Gleeson, Padraig, Gramfort, Alexandre, Guay, Samuel, Guidali, Giacomo, Halchenko, Yaroslav O., Handwerker, Daniel A., Hardcastle, Nell, Herholz, Peer, Hermes, Dora, Honey, Christopher J., Innis, Robert B., Loanas, Horea-Ioan, Jahn, Andrew, Karakuzu, Agah, Keator, David B., Kiar, Gregory, Kincses, Balint, National Institutes of Health (US), National Science Foundation (US), Novo Nordisk Foundation, European Research Council, German Research Foundation, Charité - Universitätsmedizin Berlin, Agence Nationale de la Recherche (France), Poldrack, Russell A., Markiewicz, Christopher J., Appelhoff, Stefan, Ashar, Yoni K., Auer, Tibor, Baillet, Sylvain, Bansal, Shashank, Beltrachini, Leandro, Benar, Christian G., Bertazzoli, Giacomo, Bhogawar, Suyash, Laird, Angela R., Lau, Jonathan C., Lazari, Alberto, Legarreta, Jon Haitz, Li, Adam, Li, Xiangrui, Love, Bradley C., Lu, Hanzhang, Maumet, Camille, Mazzamuto, Giacomo, Nikolaidis, Aki, Meisler, Steven L., Mikkelsen, Mark, Mutsaerts, Henk, Nichols, Thomas E., Nilsonne, Gustav, Niso, Guiomar, Norgaard, Martin, Okell, Thomas W, Oostenveld, Robert, Ort, Eduard, Park, Patrick J., Pawlik, Mateusz, Pernet, Cyril R., Pollonini, Luca, Pestilli, Franco, Petr, Jan, Phillips, Christophe, Poline, Jean-Baptiste, Reddy Raamana, Pradeep, Ritter, Petra, Rizzo, Gaia, Robbins, Kay A., Rockhill, Alexander P., Rogers, Christine, Rokem, Ariel, Rorden, Chris, Routier, Alexandre, Spisak, Tamas, Saborit-Torres, Jose Manuel, Salo, Taylor, Schirner, Michael, Smith, Robert E., Sprenger, Julia, Swann, Nicole C., Szinte, Martin, Takerkart, Sylvain, Thirion, Bertrand, Thomas, Adam G., Torabian, Sajjad, Varoquaux, Gael, Voytek, Bradley, Blair, Ross W., Welzel, Julius, Wilson, Martin, Yarkoni, Tal, Gorgolewski, Krzysztof J., Bortoletto, Marta, Boudreau, Mathieu, Brooks, Teon L., Calhoun, Vince D., Castelli, Filippo Maria, Clement, Patricia, Cohen, Alexander L, Cohen-Adad, Julien, D'Ambrosio, Sasha, Hollander, D'Ambrosio, iglesia-Vayá, María de la, Vega, Alejandro de la, Delorme, Arnaud, Devinsky, Orrin, Draschkow, Dejan, Paul Duff, Eugene, DuPre, Elizabeth, Earl, Eric, Esteban, Oscar, Feingold, Franklin W., Flandin, Guillaume, Galassi, Anthony, Gallitto, Giuseppe, Ganz, Melanie, Gau, Rémi, Gholam, James, Ghosh, Satrajit S., Giacomel, Alessio, Gillman, Ashley G, Gleeson, Padraig, Gramfort, Alexandre, Guay, Samuel, Guidali, Giacomo, Halchenko, Yaroslav O., Handwerker, Daniel A., Hardcastle, Nell, Herholz, Peer, Hermes, Dora, Honey, Christopher J., Innis, Robert B., Loanas, Horea-Ioan, Jahn, Andrew, Karakuzu, Agah, Keator, David B., Kiar, Gregory, and Kincses, Balint

Abstract

The Brain Imaging Data Structure (BIDS) is a community-driven standard for the organization of data and metadata from a growing range of neuroscience modalities. This paper is meant as a history of how the standard has developed and grown over time. We outline the principles behind the project, the mechanisms by which it has been extended, and some of the challenges being addressed as it evolves. We also discuss the lessons learned through the project, with the aim of enabling researchers in other domains to learn from the success of BIDS.

Published
2023

24. Heterogeneity in caregiving-related early adversity: Creating stable dimensions and subtypes – CORRIGENDUM

Author

Nikolaidis, Aki, primary, Heleniak, Charlotte, additional, Fields, Andrea, additional, Bloom, Paul A., additional, VanTieghem, Michelle, additional, Vannucci, Anna, additional, Camacho, Nicolas L., additional, Choy, Tricia, additional, Gibson, Lisa, additional, Harmon, Chelsea, additional, Hadis, Syntia S., additional, Douglas, Ian J., additional, Milham, Michael P., additional, and Tottenham, Nim, additional

Published
2022
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27. Brainhack: developing a culture of open, inclusive, community-driven neuroscience

Author

Gau, Remi, Noble, Stephanie, Heuer, Katja, Bottenhorn, Katherine, Bilgin, Isil, Yang, Yu-Fang, Huntenburg, Julia, Bayer, Johanna, Bethlehem, Richard, Rhoads, Shawn, Vogelbacher, Christoph, Borghesani, Valentina, Levitis, Elizabeth, Wang, Hao-Ting, Van Den Bossche, Sofie, Kobeleva, Xenia, Legarreta Gorroño, Jon Haitz, Guay, Samuel, ATAY, Melvin, Varoquaux, Gael, Huijser, Dorien, Sandström, Malin, Herholz, Peer, Nastase, Samuel, Badhwar, AmanPreet, Dumas, Guillaume, Schwab, Simon, Moia, Stefano, Dayan, Michael, Bassil, Yasmine, Brooks, Paula, Mancini, Matteo, Shine, James, O'Connor, David, Xie, Xihe, Poggiali, Davide, Friedrich, Patrick, Heinsfeld, Anibal, Riedl, Lydia, Toro, Roberto, Caballero-Gaudes, César, Eklund, Anders, Garner, Kelly, Nolan, Christopher, Demeter, Damion, Barrios, Fernando, Merchant, Junaid, McDevitt, Elizabeth, Oostenveld, Robert, Craddock, Cameron, Rokem, Ariel, Doyle, Andrew, Esper, Nathalia, Ghosh, Satrajit, Langs, Georg, Nikolaidis, Aki, Stanley, Olivia, Uruñuela, Eneko, Vohryzek, Jakub, and community, Brainhack

Subjects
neuroscience, inclusivity, training, hackathon, open science, best practices, Brainhack, reproducibility, collaboration, community building
Abstract

Brainhack is an innovative meeting format that promotes scientific collaboration and education in an open and inclusive environment. Departing from the formats of typical scientific workshops, these events are based on grassroots projects and training, and foster open and reproducible scientific practices. We describe here the multifaceted, lasting benefits of Brainhacks for individual participants, particularly early career researchers. We further highlight the unique contributions that Brainhacks can make to the research community, contributing to scientific progress by complementing opportunities available in conventional formats.

Published
2022
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33. CRISIS AFAR: An International Collaborative Study of the Impact of the COVID-19 Pandemic on Youth with Autism and Neurodevelopmental Conditions

Author

Vibert, Bethany, primary, Segura, Patricia, additional, Gallagher, Louise, additional, Georgiades, Stelios, additional, Pervanidou, Panagiota, additional, Thurm, Audrey, additional, Alexander, Lindsay, additional, Anagnostou, Evdokia, additional, Aoki, Yuta, additional, Birken, Catherine S.N., additional, Bishop, Somer L., additional, Boi, Jessica, additional, Bravaccio, Carmela, additional, Brentani, Helena, additional, Canevini, Paola, additional, Carta, Alessandra, additional, Charach, Alice, additional, Costantino, Antonella, additional, Cost, Katherine T., additional, Cravo, Elaine Andrade, additional, Crosbie, Jennifer, additional, Davico, Chiara, additional, Gabellone, Alessandra, additional, Donno, Federica, additional, Fujino, Junya, additional, Geyer, Cristiane Tezzari, additional, Hirota, Tomoya, additional, Kanne, Stephen, additional, Kawashima, Makiko, additional, Kelley, Elizabeth, additional, Kim, Hosanna, additional, Kim, Young Shin, additional, Kim, So Hyun (Sophy), additional, Korczak, Daphne J., additional, Lai, Meng-Chuan, additional, Margari, Lucia, additional, Masi, Gabriele, additional, Marzulli, Lucia, additional, Mazzone, Luigi, additional, McGrath, Jane, additional, Monga, Suneeta, additional, Morosini, Paola, additional, Nakajima, Shinichiro, additional, Narzisi, Antonio, additional, Nicolson, Rob, additional, Nikolaidis, Aki, additional, Noda, Yoshihiro, additional, Nowell, Kerri, additional, Polizzi, Miriam, additional, Portolese, Joana, additional, Riccio, Maria Pia, additional, Saito, Manabu, additional, Simhal, Anish K., additional, Siracusano, Martina, additional, Sotgiu, Stefano, additional, Stroud, Jacob, additional, Sumiya, Fernando, additional, Schwartz, Ida, additional, Tachibana, Yoshiyuki, additional, Takahashi, Nicole, additional, Takahashi, Riina, additional, Tamon, Hiroki, additional, Tancredi, Raffaella, additional, Vitiello, Benedetto, additional, Zuddas, Alessandro, additional, Leventhal, Bennett, additional, Merikangas, Kathleen, additional, Milham, Michael P, additional, and Di Martino, Adriana, additional

Published
2022
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37. Unravelling the Neural Basis of Spatial Delusions After Stroke

Author

Thiebaut De Schotten, Michel, Noble, Stephanie, Heuer, Katja, Bottenhorn, Katherine, Bilgin, Isil, Yang, Yu-Fang, Huntenburg, Julia, Bayer, Johanna M.M., Bethlehem, Richard A.I., Rhoads, Shawn, Vogelbacher, Christoph, Borghesani, Valentina, Levitis, Elizabeth, Wang, Hao-Ting, Van Den Bossche, Sofie, Kobeleva, Xenia, Legarreta, Jon Haitz, Guay, Samuel, Atay, Selim Melvin, Varoquaux, Gael, Huijser, Dorien, Sandström, Malin, Herholz, Peer, Nastase, Samuel, Badhwar, AmanPreet, Dumas, Guillaume, Schwab, Simon, Moia, Stefano, Dayan, Michael, Bassil, Yasmine, Brooks, Paula, Mancini, Matteo, Shine, James, O’Connor, David, Xie, Xihe, Poggiali, Davide, Friedrich, Patrick, Heinsfeld, Anibal, Riedl, Lydia, Toro, Roberto, Caballero-Gaudes, César, Eklund, Anders, Garner, Kelly, Nolan, Christopher, Demeter, Damion, Barrios, Fernando, Merchant, Junaid, McDevitt, Elizabeth, Oostenveld, Robert, Craddock, R. Cameron, Rokem, Ariel, Doyle, Andrew, Ghosh, Satrajit, Nikolaidis, Aki, Stanley, Olivia, Uruñuela, Eneko, Anousheh, Nasim, Arnatkeviciute, Aurina, Auzias, Guillaume, Bachar, Dipankar, Bannier, Elise, Basanisi, Ruggero, Basavaraj, Arshitha, Bedini, Marco, Bellec, Pierre, Benn, R. Austin, Berluti, Kathryn, Bollmann, Steffen, Bollmann, Saskia, Bradley, Claire, Brown, Jesse, Buchweitz, Augusto, Callahan, Patrick, Chan, Micaela, Chandio, Bramsh, Cheng, Theresa, Chopra, Sidhant, Chung, Ai Wern, Close, Thomas, Combrisson, Etienne, Cona, Giorgia, Constable, R. Todd, Cury, Claire, Dadi, Kamalaker, Damasceno, Pablo, Das, Samir, De Vico Fallani, Fabrizio, DeStasio, Krista, Dickie, Erin, Dorfschmidt, Lena, Duff, Eugene, Dupre, Elizabeth, Dziura, Sarah, Esper, Nathalia, Esteban, Oscar, Fadnavis, Shreyas, Flandin, Guillaume, Flannery, Jessica, Flournoy, John, Franco, Alexandre, Ganesan, Saampras, Gao, Siyuan, García Alanis, José, Garyfallidis, Eleftherios, Glatard, Tristan, Glerean, Enrico, Gonzalez-Castillo, Javier, Gould van Praag, Cassandra, Greene, Abigail, Gupta, Geetika, Hahn, Catherine Alice, Halchenko, Yaroslav, Handwerker, Daniel, Hartmann, Thomas, Hayot-Sasson, Valérie, Heunis, Stephan, Hoffstaedter, Felix, Hohmann, Daniela, Horien, Corey, Ioanas, Horea-Ioan, Iordan, Alexandru, Jiang, Chao, Joseph, Michael, Kai, Jason, Karakuzu, Agah, KENNEDY, David, Keshavan, Anisha, Khan, Ali, Kiar, Gregory, Klink, P. Christiaan, Koppelmans, Vincent, Koudoro, Serge, Laird, Angela, Langs, Georg, Laws, Marissa, Licandro, Roxane, Liew, Sook-Lei, Lipic, Tomislav, Litinas, Krisanne, Lurie, Daniel, Lussier, Désirée, Madan, Christopher, Mais, Lea-Theresa, Mansour L, Sina, Manzano-Patron, J.P., Maoutsa, Dimitra, Marcon, Matheus, Margulies, Daniel, Marinato, Giorgio, Marinazzo, Daniele, Markiewicz, Christopher, Meneguzzi, Felipe, Meunier, David, Milham, Michael, Mills, Kathryn, Momi, Davide, Moreau, Clara, Motala, Aysha, Moxon-Emre, Iska, Nichols, Thomas, Nielson, Dylan, Nilsonne, Gustav, Novello, Lisa, O’Brien, Caroline, Olafson, Emily, Oliver, Lindsay, Onofrey, John, Orchard, Edwina, Oudyk, Kendra, Park, Patrick, Parsapoor, Mahboobeh, Pasquini, Lorenzo, Peltier, Scott, Pernet, Cyril, Pienaar, Rudolph, Pinheiro-Chagas, Pedro, Poline, Jean-Baptiste, Qiu, Anqi, Quendera, Tiago, Rice, Laura, Rocha-Hidalgo, Joscelin, Rutherford, Saige, Scharinger, Mathias, Scheinost, Dustin, Shariq, Deena, Shaw, Thomas, Siless, Viviana, Simmonite, Molly, Sirmpilatze, Nikoloz, Spence, Hayli, Sprenger, Julia, Stajduhar, Andrija, Szinte, Martin, Takerkart, Sylvain, Tam, Angela, Tejavibulya, Link, Thome, Ina, Tomaz da Silva, Laura, Traut, Nicolas, Uddin, Lucina, Vallesi, Antonino, VanMeter, John, Vijayakumar, Nandita, di Oleggio Castello, Matteo Visconti, Vohryzek, Jakub, Vukojević, Jakša, Whitaker, Kirstie Jane, Whitmore, Lucy, Wideman, Steve, Witt, Suzanne, Xie, Hua, Xu, Ting, Yan, Chao-Gan, Yeh, Fang-Cheng, Yeo, B.T. Thomas, Zuo, Xi-Nian, Alves, Pedro, Fonseca, Ana, Silva, Daniela, Andrade, Matilde, Pinho‐e‐Melo, Teresa, Martins, Isabel, Institut des Maladies Neurodégénératives [Bordeaux] (IMN), Université de Bordeaux (UB)-Centre National de la Recherche Scientifique (CNRS), and Repositório da Universidade de Lisboa

Subjects
0301 basic medicine, Male, medicine.medical_specialty, Support Vector Machine, Reduplicative paramnesia, Audiology, Logistic regression, Delusions, 03 medical and health sciences, [SCCO]Cognitive science, 0302 clinical medicine, Neuroimaging, Image Interpretation, Computer-Assisted, medicine, Humans, Functional disconnection, Prospective Studies, Stroke, ComputingMilieux_MISCELLANEOUS, Aged, Aged, 80 and over, Brain Mapping, business.industry, Anosognosia, Confounding, 16. Peace & justice, medicine.disease, Magnetic Resonance Imaging, 030104 developmental biology, Neurology, Case-Control Studies, Female, Neurology (clinical), Disconnection, business, Tomography, X-Ray Computed, 030217 neurology & neurosurgery
Abstract

© 2021 American Neurological Association, Objective: Knowing explicitly where we are is an interpretation of our spatial representations. Reduplicative paramnesia is a disrupting syndrome in which patients present a firm belief of spatial mislocation. Here, we studied the largest sample of patients with delusional misidentifications of space (i.e. reduplicative paramnesia) after stroke to shed light on their neurobiology. Methods: In a prospective, cumulative, case-control study, we screened 400 patients with acute right-hemispheric stroke. We included 64 cases and 233 controls. First, lesions were delimited and normalized. Then, we computed structural and functional disconnection maps using methods of lesion-track and network-mapping. The maps were compared, controlling for confounders. Second, we built a multivariate logistic model including clinical, behavioural and neuroimaging data. Finally, we performed a nested cross-validation of the model with a support-vector machine analysis. Results: The most frequent misidentification subtype was confabulatory mislocation (56%), followed by place reduplication (19%) and chimeric assimilation (13%). Our results indicate that structural disconnection is the strongest predictor of the syndrome and included two distinct streams, connecting right fronto-thalamic and right occipito-temporal structures. In the multivariate model, the independent predictors of reduplicative paramnesia were the structural disconnection map, lesion sparing of right dorsal fronto-parietal regions, age and anosognosia. Good discrimination accuracy was demonstrated (area under the curve = 0.80[0.75-0.85]). Interpretation: Our results localize the anatomical circuits that may have a role in the abnormal spatial-emotional binding and in the defective updating of spatial representations underlying reduplicative paramnesia. This novel data may contribute to better understand the pathophysiology of delusional syndromes after stroke., The authors acknowledge our colleagues from the Department of Neurology and from the Language Research Laboratory for their contribution to patient screening. This work received funding from “PRÉMIO JOÃO LOBO ANTUNES” – SCML (grant to P.N.A.), from “Bolsa de Investigação em Doenças Vasculares Cerebrais 2017”–SPAVC (grant to P.N.A.) and from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program (grant agreement No. 818521 to M.T.S.).“Data were provided in part bythe Human Connectome Project, WU-Minn Consortium(Principal Investigators: David Van Essen and KamilUgurbil; 1U54 MH091657) funded by the 16 NIH Institutes and Centers that support the NIH Blueprint for Neuroscience Research; and by the McDonnell Center for Systems Neuroscience at Washington University.

Published
2021

39. Brainhack: Developing a culture of open, inclusive, community-driven neuroscience.

Author

UCL - SSH/IPSY - Psychological Sciences Research Institute, Gau, Remi, Noble, Stephanie, Heuer, Katja, Bottenhorn, Katherine L, Bilgin, Isil P, Yang, Yu-Fang, Huntenburg, Julia M, Bayer, Johanna M M, Bethlehem, Richard A I, Rhoads, Shawn A, Vogelbacher, Christoph, Borghesani, Valentina, Levitis, Elizabeth, Wang, Hao-Ting, Van Den Bossche, Sofie, Kobeleva, Xenia, Legarreta, Jon Haitz, Guay, Samuel, Atay, Selim Melvin, Varoquaux, Gael P, Huijser, Dorien C, Sandström, Malin S, Herholz, Peer, Nastase, Samuel A, Badhwar, AmanPreet, Dumas, Guillaume, Schwab, Simon, Moia, Stefano, Dayan, Michael, Bassil, Yasmine, Brooks, Paula P, Mancini, Matteo, Shine, James M, O'Connor, David, Xie, Xihe, Poggiali, Davide, Friedrich, Patrick, Heinsfeld, Anibal S, Riedl, Lydia, Toro, Roberto, Caballero-Gaudes, César, Eklund, Anders, Garner, Kelly G, Nolan, Christopher R, Demeter, Damion V, Barrios, Fernando A, Merchant, Junaid S, McDevitt, Elizabeth A, Oostenveld, Robert, Craddock, R Cameron, Rokem, Ariel, Doyle, Andrew, Ghosh, Satrajit S, Nikolaidis, Aki, Stanley, Olivia W, Uruñuela, Eneko, Brainhack Community, UCL - SSH/IPSY - Psychological Sciences Research Institute, Gau, Remi, Noble, Stephanie, Heuer, Katja, Bottenhorn, Katherine L, Bilgin, Isil P, Yang, Yu-Fang, Huntenburg, Julia M, Bayer, Johanna M M, Bethlehem, Richard A I, Rhoads, Shawn A, Vogelbacher, Christoph, Borghesani, Valentina, Levitis, Elizabeth, Wang, Hao-Ting, Van Den Bossche, Sofie, Kobeleva, Xenia, Legarreta, Jon Haitz, Guay, Samuel, Atay, Selim Melvin, Varoquaux, Gael P, Huijser, Dorien C, Sandström, Malin S, Herholz, Peer, Nastase, Samuel A, Badhwar, AmanPreet, Dumas, Guillaume, Schwab, Simon, Moia, Stefano, Dayan, Michael, Bassil, Yasmine, Brooks, Paula P, Mancini, Matteo, Shine, James M, O'Connor, David, Xie, Xihe, Poggiali, Davide, Friedrich, Patrick, Heinsfeld, Anibal S, Riedl, Lydia, Toro, Roberto, Caballero-Gaudes, César, Eklund, Anders, Garner, Kelly G, Nolan, Christopher R, Demeter, Damion V, Barrios, Fernando A, Merchant, Junaid S, McDevitt, Elizabeth A, Oostenveld, Robert, Craddock, R Cameron, Rokem, Ariel, Doyle, Andrew, Ghosh, Satrajit S, Nikolaidis, Aki, Stanley, Olivia W, Uruñuela, Eneko, and Brainhack Community

Abstract

Brainhack is an innovative meeting format that promotes scientific collaboration and education in an open, inclusive environment. This NeuroView describes the myriad benefits for participants and the research community and how Brainhacks complement conventional formats to augment scientific progress.

Published
2021

40. Centering inclusivity in the design of online conferences:An OHBM-Open Science perspective

Author

Levitis, Elizabeth, Van Praag, Cassandra D.Gould, Gau, Rémi, Heunis, Stephan, Dupre, Elizabeth, Kiar, Gregory, Bottenhorn, Katherine L., Glatard, Tristan, Nikolaidis, Aki, Whitaker, Kirstie Jane, Mancini, Matteo, Niso, Guiomar, Afyouni, Soroosh, Alonso-Ortiz, Eva, Appelhoff, Stefan, Arnatkeviciute, Aurina, Atay, Selim Melvin, Auer, Tibor, Baracchini, Giulia, Bayer, Johanna M.M., Beauvais, Michael J.S., Bijsterbosch, Janine D., Bilgin, Isil P., Bollmann, Saskia, Bollmann, Steffen, Botvinik-Nezer, Rotem, Bright, Molly G., Calhoun, Vince D., Chen, Xiao, Chopra, Sidhant, Chuan-Peng, Hu, Close, Thomas G., Cookson, Savannah L., Craddock, R. Cameron, De La Vega, Alejandro, De Leener, Benjamin, Demeter, Damion V., Di Maio, Paola, Dickie, Erin W., Eickhoff, Simon B., Esteban, Oscar, Finc, Karolina, Frigo, Matteo, Ganesan, Saampras, Ganz, Melanie, Garner, Kelly G., Garza-Villarreal, Eduardo A., Gonzalez-Escamilla, Gabriel, Goswami, Rohit, Griffiths, John D., Grootswagers, Tijl, Guay, Samuel, Guest, Olivia, Handwerker, Daniel A., Herholz, Peer, Heuer, Katja, Huijser, Dorien C., Iacovella, Vittorio, Joseph, Michael J.E., Karakuzu, Agah, Keator, David B., Kobeleva, Xenia, Kumar, Manoj, Laird, Angela R., Larson-Prior, Linda J., Lautarescu, Alexandra, Lazari, Alberto, Legarreta, Jon Haitz, Li, Xue Ying, Lv, Jinglei, Mansour L., Sina, Meunier, David, Moraczewski, Dustin, Nandi, Tulika, Nastase, Samuel A., Nau, Matthias, Noble, Stephanie, Norgaard, Martin, Obungoloch, Johnes, Oostenveld, Robert, Orchard, Edwina R., Pinho, Ana Luísa, Poldrack, Russell A., Qiu, Anqi, Raamana, Pradeep Reddy, Rokem, Ariel, Rutherford, Saige, Sharan, Malvika, Shaw, Thomas B., Syeda, Warda T., Testerman, Meghan M., Toro, Roberto, Valk, Sofie L., Van Den Bossche, Sofie, Varoquaux, Gaël, Váša, František, Veldsman, Michele, Vohryzek, Jakub, Wagner, Adina S., Walsh, Reubs J., White, Tonya, Wong, Fu Te, Xie, Xihe, Yan, Chao Gan, Yang, Yu Fang, Yee, Yohan, Zanitti, Gaston E., Van Gulick, Ana E., Duff, Eugene, Maumet, Camille, Levitis, Elizabeth, Van Praag, Cassandra D.Gould, Gau, Rémi, Heunis, Stephan, Dupre, Elizabeth, Kiar, Gregory, Bottenhorn, Katherine L., Glatard, Tristan, Nikolaidis, Aki, Whitaker, Kirstie Jane, Mancini, Matteo, Niso, Guiomar, Afyouni, Soroosh, Alonso-Ortiz, Eva, Appelhoff, Stefan, Arnatkeviciute, Aurina, Atay, Selim Melvin, Auer, Tibor, Baracchini, Giulia, Bayer, Johanna M.M., Beauvais, Michael J.S., Bijsterbosch, Janine D., Bilgin, Isil P., Bollmann, Saskia, Bollmann, Steffen, Botvinik-Nezer, Rotem, Bright, Molly G., Calhoun, Vince D., Chen, Xiao, Chopra, Sidhant, Chuan-Peng, Hu, Close, Thomas G., Cookson, Savannah L., Craddock, R. Cameron, De La Vega, Alejandro, De Leener, Benjamin, Demeter, Damion V., Di Maio, Paola, Dickie, Erin W., Eickhoff, Simon B., Esteban, Oscar, Finc, Karolina, Frigo, Matteo, Ganesan, Saampras, Ganz, Melanie, Garner, Kelly G., Garza-Villarreal, Eduardo A., Gonzalez-Escamilla, Gabriel, Goswami, Rohit, Griffiths, John D., Grootswagers, Tijl, Guay, Samuel, Guest, Olivia, Handwerker, Daniel A., Herholz, Peer, Heuer, Katja, Huijser, Dorien C., Iacovella, Vittorio, Joseph, Michael J.E., Karakuzu, Agah, Keator, David B., Kobeleva, Xenia, Kumar, Manoj, Laird, Angela R., Larson-Prior, Linda J., Lautarescu, Alexandra, Lazari, Alberto, Legarreta, Jon Haitz, Li, Xue Ying, Lv, Jinglei, Mansour L., Sina, Meunier, David, Moraczewski, Dustin, Nandi, Tulika, Nastase, Samuel A., Nau, Matthias, Noble, Stephanie, Norgaard, Martin, Obungoloch, Johnes, Oostenveld, Robert, Orchard, Edwina R., Pinho, Ana Luísa, Poldrack, Russell A., Qiu, Anqi, Raamana, Pradeep Reddy, Rokem, Ariel, Rutherford, Saige, Sharan, Malvika, Shaw, Thomas B., Syeda, Warda T., Testerman, Meghan M., Toro, Roberto, Valk, Sofie L., Van Den Bossche, Sofie, Varoquaux, Gaël, Váša, František, Veldsman, Michele, Vohryzek, Jakub, Wagner, Adina S., Walsh, Reubs J., White, Tonya, Wong, Fu Te, Xie, Xihe, Yan, Chao Gan, Yang, Yu Fang, Yee, Yohan, Zanitti, Gaston E., Van Gulick, Ana E., Duff, Eugene, and Maumet, Camille

Abstract

As the global health crisis unfolded, many academic conferences moved online in 2020. This move has been hailed as a positive step towards inclusivity in its attenuation of economic, physical, and legal barriers and effectively enabled many individuals from groups that have traditionally been underrepresented to join and participate. A number of studies have outlined how moving online made it possible to gather a more global community and has increased opportunities for individuals with various constraints, e.g., caregiving responsibilities. Yet, the mere existence of online conferences is no guarantee that everyone can attend and participate meaningfully. In fact, many elements of an online conference are still significant barriers to truly diverse participation: the tools used can be inaccessible for some individuals; the scheduling choices can favour some geographical locations; the set-up of the conference can provide more visibility to well-established researchers and reduce opportunities for early-career researchers. While acknowledging the benefits of an online setting, especially for individuals who have traditionally been underrepresented or excluded, we recognize that fostering social justice requires inclusivity to actively be centered in every aspect of online conference design. Here, we draw from the literature and from our own experiences to identify practices that purposefully encourage a diverse community to attend, participate in, and lead online conferences. Reflecting on how to design more inclusive online events is especially important as multiple scientific organizations have announced that they will continue offering an online version of their event when in-person conferences can resume.

Published
2021

41. Accelerating the Evolution of Nonhuman Primate Neuroimaging

Author

Milham, Michael, Petkov, Christopher I., Margulies, Daniel S., Schroeder, Charles E., Basso, Michele A., Belin, Pascal, Fair, Damien A., Fox, Andrew, Kastner, Sabine, Mars, Rogier B., Messinger, Adam, Poirier, Colline, Vanduffel, Wim, Van Essen, David C., Alvand, Ashkan, Becker, Yannick, Ben Hamed, Suliann, Benn, Austin, Bodin, Clementine, Boretius, Susann, Cagna, Bastien, Coulon, Olivier, El-Gohary, Sherif Hamdy, Evrard, Henry, Forkel, Stephanie J., Friedrich, Patrick, Froudist-Walsh, Sean, Garza-Villarreal, Eduardo A., Gao, Yang, Gozzi, Alessandro, Grigis, Antoine, Hartig, Renee, Hayashi, Takuya, Heuer, Katja, Howells, Henrietta, Ardesch, Dirk Jan, Jarrett, Wendy, Jedema, Hank P., Kagan, Igor, Kelly, Clare, Kennedy, Henry, Klink, P. Christiaan, Kwok, Sze Chai, Leech, Robert, Liu, Xiaojin, Madan, Christopher, Madushanka, Wasana, Majka, Piotr, Mallon, Ann-Marie, Marche, Kevin, Meguerditchian, Adrien, Menon, Ravi S., Merchant, Hugo, Mitchell, Anna, Nenning, Karl-Heinz, Nikolaidis, Aki, Ortiz-Rios, Michael, Pagani, Marco, Pareek, Vikas, Prescott, Mark, Procyk, Emmanuel, Rajimehr, Reza, Rautu, Ioana-Sabina, Raz, Amir, Roe, Anna Wang, Roumazeilles, Lea, Sakai, Tomoko, Sallet, Jerome, Sato, Chika, Sawiak, Stephen, Schiffer, Marike, Schwiedrzik, Caspar M., Seidlitz, Jakob, Sein, Julien, Shen, Zhi-ming, Shmuel, Amir, Silva, Afonso C., Simone, Luciano, Sirmpilatze, Nikoloz, Sliwa, Julia, Smallwood, Jonathan, Tasserie, Jordy, Thiebaut de Schotten, Michel, Toro, Roberto, Trapeau, Regis, Uhrig, Lynn, Vezoli, Julien, Wang, Zheng, Wells, Sara, Williams, Bella, Xu, Ting, Xu, Augix Guohua, Yacoub, Essa, Zhan, Ming, Ai, Lei, Balezeau, Fabien, Baxter, Mark G., Blezer, Erwin L.A., Brochier, Thomas, Chen, Aihua, Croxson, Paula L., Damatac, Christienne G., Dehaene, Stanislas, Everling, Stefan, Fleysher, Lazar, Freiwald, Winrich, Griffiths, Timothy D., Guedj, Carole, Hadj-Bouziane, Fadila, Harel, Noam, Hiba, Bassem, Jung, Benjamin, Koo, Bonhwang, Laland, Kevin N., Leopold, David A., Lindenfors, Patrik, Meunier, Martine, Mok, Kelvin, Morrison, John H., Nacef, Jennifer, Nagy, Jamie, Pinsk, Mark, Reader, Simon M., Roelfsema, Pieter R., Rudko, David A., Rushworth, Matthew F.S., Russ, Brian E., Schmid, Michael Christoph, Sullivan, Elinor L., Thiele, Alexander, Todorov, Orlin S., Tsao, Doris, Ungerleider, Leslie, Wilson, Charles R.E., Ye, Frank Q., Zarco, Wilbert, and Zhou, Yong-di

Subjects
General Neuroscience
Abstract

Nonhuman primate neuroimaging is on the cusp of a transformation, much in the same way its human counterpart was in 2010, when the Human Connectome Project was launched to accelerate progress. Inspired by an open data-sharing initiative, the global community recently met and, in this article, breaks through obstacles to define its ambitions.

Published
2020

43. Ten simple rules for open human health research

Author

Bafeta, Aïda, primary, Bobe, Jason, additional, Clucas, Jon, additional, Gonsalves, Pattie Pramila, additional, Gruson-Daniel, Célya, additional, Hudson, Kathy L., additional, Klein, Arno, additional, Krishnakumar, Anirudh, additional, McCollister-Slipp, Anna, additional, Lindner, Ariel B., additional, Misevic, Dusan, additional, Naslund, John A., additional, Nebeker, Camille, additional, Nikolaidis, Aki, additional, Pasquetto, Irene, additional, Sanchez, Gabriela, additional, Schapira, Matthieu, additional, Scheininger, Tohar, additional, Schoeller, Félix, additional, Sólon Heinsfeld, Anibal, additional, and Taddei, François, additional

Published
2020
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44. The Coronavirus Health and Impact Survey (CRISIS) reveals reproducible correlates of pandemic-related mood states across the Atlantic

Author

Nikolaidis, Aki, primary, Paksarian, Diana, additional, Alexander, Lindsay, additional, Derosa, Jacob, additional, Dunn, Julia, additional, Nielson, Dylan M., additional, Droney, Irene, additional, Kang, Minji, additional, Douka, Ioanna, additional, Bromet, Evelyn, additional, Milham, Michael, additional, Stringaris, Argyris, additional, and Merikangas, Kathleen R., additional

Published
2020
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46. Effective Self-Management for Early Career Researchers in the Natural and Life Sciences

Author

Bielczyk, Natalia Z., primary, Ando, Ayaka, additional, Badhwar, AmanPreet, additional, Caldinelli, Chiara, additional, Gao, Mengxia, additional, Haugg, Amelie, additional, Hernandez, Leanna M., additional, Ito, Kaori L., additional, Kessler, Dan, additional, Lurie, Dan, additional, Makary, Meena M., additional, Nikolaidis, Aki, additional, Veldsman, Michele, additional, Allen, Christopher, additional, Bankston, Adriana, additional, Bottenhorn, Katherine L., additional, Braukmann, Ricarda, additional, Calhoun, Vince, additional, Cheplygina, Veronika, additional, Boffino, Catarina Costa, additional, Ercan, Ece, additional, Finc, Karolina, additional, Foo, Heidi, additional, Khatibi, Ali, additional, La, Christian, additional, Mehler, David M.A., additional, Narayanan, Sridar, additional, Poldrack, Russell A., additional, Raamana, Pradeep Reddy, additional, Salo, Taylor, additional, Godard-Sebillotte, Claire, additional, Uddin, Lucina Q., additional, Valeriani, Davide, additional, Valk, Sofie L., additional, Walton, Courtney C., additional, Ward, Phillip G.D., additional, Yanes, Julio A., additional, and Zhou, Xinqi, additional

Published
2020
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48. Standardizing Human Brain Parcellations

Author

Lawrence, Ross M., primary, Bridgeford, Eric W., additional, Myers, Patrick E., additional, Arvapalli, Ganesh C., additional, Ramachandran, Sandhya C., additional, Pisner, Derek A., additional, Frank, Paige F., additional, Lemmer, Allison D., additional, Nikolaidis, Aki, additional, and Vogelstein, Joshua T., additional

Published
2019
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