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Methylococcus capsulatus MIR is an aerobic methanotroph that was isolated from an activated sludge sample and is capable of growth on methanol. The finished genome of strain MIR is 3.2 Mb in size. It encodes both MxaFI and XoxF methanol dehydrogenases, as well as three different isozymes of formate dehydrogenase.

There is still a lack of understanding of H2S formation in agricultural waste, which leads to poor odour prevention and control. Microbial sulfate reduction is a major process contributing to sulfide formation in natural and technogenic environments with high sulfate and low oxygen concentration. Agricultural waste can be considered a low-sulfate system with no obvious input of oxidised sulfur compounds. The purpose of this study was to characterise a microbial community participating in H2S production and estimate the microbial sulfate reduction rate (SRR) in manure slurry from a large-scale swine finishing facility in Western Siberia. In a series of manure slurry microcosms, we identified bacterial consortia by 16S rRNA gene profiling and metagenomic analysis and revealed that sulfate-reducing Desulfovibrio were key players responsible for H2S production. The SRR measured with radioactive sulfate in manure slurry was high and comprised 7.25 nmol S cm−3 day−1. Gypsum may be used as a solid-phase electron acceptor for sulfate reduction. Another plausible source of sulfate is a swine diet, which often contains supplements in the form of sulfates, including lysine sulfate. Low-sulfur diet, manure treatment with iron salts, and avoiding gypsum bedding are possible ways to mitigate H2S emissions from swine manure.

In recent years, the development of antibiotic-resistant bacteria has become a global problem, which determines the need for research in the direction of developing alternative methods for controlling diseases of agricultural animals of bacterial etiology. Bacteriophages (bacterial viruses) create the prospect of a sustainable alternative approach in the fight against bacterial pathogens. In this paper, we consider the prospects of using bacteriophages as biological agents in the fight against salmonellosis and colibacteriosis of animals, as well as reducing the likelihood of human disease through slaughter products and meat of animals and poultry, contaminated with the pathogens of these infections.

The article presents data on the properties and biological features of Aeromonas veronii bacteria isolated from sick fish in the conditions of an estuary reservoir. The zoopathogenic properties and multiple antibiotic resistance of the studied epizootic strains have been proved. The prospects of bacteriophagy as a method of combating aeromonosis are substantiated. Nine bacteriophages specifically active against pathogens were identified. Strict strain specificity and culture-enzymatic differences between Aeromonas veronii strains on a chromogenic medium allow us to assert the presence of biovariants in this type of microorganisms.

Cultivation and molecular approaches were used to study methanogenesis in saline aquatic system of the Lake Elton (southern Russia), the largest hypersaline lake in Europe. The potential rates of hydrogenotrophic, acetoclastic, methylotrophic and methyl-reducing methanogenesis and diversity of the growth-enriched for by adding electron donors methanogenic communities were studied in the sediment slurry incubations at salinity range from 7 to 275 g/L. The most active pathway detected at all salinities was methylotrophic with a dominance of Methanohalobium and Methanohalophilus genera, at salt saturation and moderately halophilic Methanolobus and Methanococcoides at lower salinity. The absence of methane production from acetate, formate and H2/CO2 under hypersaline conditions was most probably associated with the energy constraints. The contribution of hydrogenotrophic, acetoclastic, and methyl-reducing methanogens to the community increases with a decrease in salinity. Temperature might play an important regulatory function in hypersaline habitats; i.e. methylotrophic methanogens and hydrogenotrophic sulfate-reducing bacteria (SRB) outcompeting methyl-reducing methanogens under mesophilic conditions, and vice versa under thermophilic conditions. An active methane production together with negligible methane oxidation makes hypersaline environments a potential source of methane emission.

In the bottom sediments from a number of the Barents Sea sites, including coastal areas of the Novaya Zemlya, Franz Josef Land, and Svalbard archipelagos, sulphate reduction rates were measured and the phylogenetic composition of sulphate-reducing bacterial (SRB) communities was analysed for the first time. Molecular genetic analysis of the sequences of the 16S rRNA and dsrB genes (the latter encodes the β-subunit of dissimilatory (bi)sulphite reductase) revealed significant differences in the composition of bacterial communities in different sampling stations and sediment horizons of the Barents Sea depending on the physicochemical conditions. The major bacteria involved in reduction of sulphur compounds in Arctic marine bottom sediments belonged to Desulfobulbaceae, Desulfobacteraceae, Desulfovibrionaceae, Desulfuromonadaceae, and Desulfarculaceae families, as well as to uncultured clades SAR324 and Sva0485. Desulfobulbaceae and Desulfuromonadaceae predominated in the oxidised (E

Microbial communities in wastewater treatment plants (WWTPs) play a key role in water purification. Microbial communities of activated sludge (AS) vary extensively based on plant operating technology, influent characteristics and WWTP capacity. In this study we performed 16S rRNA gene profiling of AS at nine large-scale WWTPs responsible for the treatment of municipal sewage from the city of Moscow, Russia. Two plants employed conventional aerobic process, one plant—nitrification/denitrification technology, and six plants were operated with the University of Cape Town (UCT) anaerobic/anoxic/oxic process. Microbial communities were impacted by the technology and dominated by the Proteobacteria, Bacteroidota and Actinobacteriota. WWTPs employing the UCT process enabled efficient removal of not only organic matter, but also nitrogen and phosphorus, consistently with the high content of ammonia-oxidizing Nitrosomonas sp. and phosphate-accumulating bacteria. The latter group was represented by Candidatus Accumulibacter, Tetrasphaera sp. and denitrifiers. Co-occurrence network analysis provided information on key hub microorganisms in AS, which may be targeted for manipulating the AS stability and performance. Comparison of AS communities from WWTPs in Moscow and worldwide revealed that Moscow samples clustered together indicating that influent characteristics, related to social, cultural and environmental factors, could be more important than a plant operating technology.

A combination of physicochemical and radiotracer analysis, high-throughput sequencing of the 16S rRNA, and particulate methane monooxygenase subunit A (pmoA) genes was used to link a microbial community profile with methane, sulfur, and nitrogen cycling processes. The objects of study were surface sediments sampled at five stations in the northern part of the Barents Sea. The methane content in the upper layers (0–5 cm) ranged from 0.2 to 2.4 µM and increased with depth (16–19 cm) to 9.5 µM. The rate of methane oxidation in the oxic upper layers varied from 2 to 23 nmol CH4 L−1 day−1 and decreased to 0.3 nmol L−1 day−1 in the anoxic zone at a depth of 16–19 cm. Sulfate reduction rates were much higher, from 0.3 to 2.8 µmol L −1 day −1. In the surface sediments, ammonia-oxidizing Nitrosopumilaceae were abundant, the subsequent oxidation of nitrite to nitrate can be carried out by Nitrospira sp. Aerobic methane oxidation could be performed by uncultured deep-sea cluster 3 of gamma-proteobacterial methanotrophs. Undetectable low levels of methanogenesis were consistent with a near complete absence of methanogens. Anaerobic methane oxidation in the deeper sediments was likely performed by ANME-2a-2b and ANME-2c archaea in consortium with sulfate-reducing Desulfobacterota. Sulfide can be oxidized by nitrate-reducing Sulfurovum sp. Thus, the sulfur cycle was linked with the anaerobic oxidation of methane and the nitrogen cycle, which included the oxidation of ammonium to nitrate in the oxic zone and denitrification coupled to the oxidation of sulfide in the deeper sediments. Methane concentrations and rates of microbial biogeochemical processes in sediments in the northern part of the Barents Sea were noticeably higher than in oligotrophic areas of the Arctic Ocean, indicating that an increase in methane concentration significantly activates microbial processes.

Terrestrial mud volcanoes (TMVs) are important natural sources of methane emission. The microorganisms inhabiting these environments remain largely unknown. We studied the phylogenetic composition and metabolic potential of the prokaryotic communities of TMVs located in the Taman Peninsula, Russia, using a metagenomic approach. One of the examined sites harbored a unique community with a high abundance of anaerobic methane-oxidizing archaea belonging to ANME-3 group (39% of all 16S rRNA gene reads). The high number of ANME-3 archaea was confirmed by qPCR, while the process of anaerobic methane oxidation was demonstrated by radioisotopic experiments. We recovered metagenome-assembled genomes (MAGs) of archaeal and bacterial community members and analyzed their metabolic capabilities. The ANME-3 MAG contained a complete set of genes for methanogenesis as well as of ribosomal RNA and did not encode proteins involved in dissimilatory nitrate or sulfate reduction. The presence of multiheme c-type cytochromes suggests that ANME-3 can couple methane oxidation with the reduction of metal oxides or with the interspecies electron transfer to a bacterial partner. The bacterial members of the community were mainly represented by autotrophic, nitrate-reducing, sulfur-oxidizing bacteria, as well as by fermentative microorganisms. This study extends the current knowledge of the phylogenetic and metabolic diversity of prokaryotes in TMVs and provides a first insight into the genomic features of ANME-3 archaea.

In this study, Ailanthus altissima sawdust was chemically activated and characterized by Scanning Electron Microscopy (SEM), Fourier Transform Infrared (FTIR), Energy Dispersive X rays (EDX), and surface area analyzer. The sawdust was used as an adsorbent for the removal of azo dye, Acid Yellow 29 (AY 29) from wastewater. Different kinetic and equilibrium models were used to calculate the adsorption parameters. Among the applied models, the more suitable model was Freundlich with maximum adsorption capacities of 9.464, 12.798, and 11.46 mg/g at 20 °C, 30 °C, and 40 °C respectively while R2 values close to 1. Moreover, the kinetic data was best fitted in pseudo second order kinetic model with high R2 values approaching to 1. Furthermore, adsorption thermodynamics parameters such as free energy, enthalpy, and entropy were calculated and the adsorption process was found to be exothermic with a value of ∆H° = −9.981 KJ mol−1, spontaneous that was concluded from ΔG° values which were negative (−0.275, −3.422, and −6.171 KJ mol−1 at 20, 30, and 40 °C respectively). A positive entropy change ∆S° with a value of 0.0363 KJ mol−1 indicated the increase disorder during adsorption process. It was concluded that the activated sawdust could be used as a suitable adsorbent for the removal of waste material, especially dyes from polluted waters.

Although arctic and subarctic lakes are important sources of methane, the emission of which will increase due to the melting of permafrost, the processes related to the methane cycle in such environments are far from being comprehensively understood. Here we studied the microbial communities in the near-bottom water layer and sediments of the meromictic subarctic Lake Svetloe using high-throughput sequencing of the 16S rRNA and methyl coenzyme M reductase subunit A genes. Hydrogenotrophic methanogens of the order Methanomicrobiales were abundant, both in the water column and in sediments, while the share of acetoclastic Methanosaetaceae decreased with the depth of sediments. Members of the Methanomassiliicoccales order were absent in the water but abundant in the deep sediments. Archaea known to perform anaerobic oxidation of methane were not found. The bacterial component of the microbial community in the bottom water layer included oxygenic (Cyanobacteria) and anoxygenic (Chlorobi) phototrophs, aerobic Type I methanotrophs, methylotrophs, syntrophs, and various organotrophs. In deeper sediments the diversity of the microbial community decreased, and it became dominated by methanogenic archaea and the members of the Bathyarchaeota, Chloroflexi and Deltaproteobacteria. This study shows that the sediments of a subarctic meromictic lake contain a taxonomically and metabolically diverse community potentially capable of complete mineralization of organic matter.

In this study, activated carbon (AC) and magnetic activated carbon (MAC) were prepared from Dalbergia sissoo sawdust for the removal of antibiotic Azithromycin (AZM) from aqueous solution. The effect of initial concentration, contact time, pH, adsorbent dosage, and the temperature were investigated for both the adsorbents. The optimum AZM concentration, contact time, pH and adsorbents dosages were found to be 80 mg/L, 120 min, 6 and 7 (pH, respectively, for AC and MAC), and 0.1 g (for both AC and MAC), respectively. The isothermal data of both sets of experiments correlated well with the Langmuir isotherm model, while the kinetic data with the pseudo-second-order model. The adsorption of AZM on both adsorbents was found to be favorable, which is evident in the values of the thermodynamic parameters (ΔH = −26.506 and −24.149 KJ/mol, ΔS = 91.812 and 81.991 J/mol K, respectively, for AC and MAC). To evaluate the effect of AC and MAC on the membrane parameters, a continuous stirred reactor was connected with ultrafiltration (UF), nanofiltration (NF), and reverse osmosis (RO) membranes. High % retention and improved permeate flux (around 90%) were obtained for AC/UF, AC/NF AC/RO, MAC/UF, MAC/NF, and MAC/RO treatments. The percent retention of AZM observed for AC/UF, AC/NF AC/RO was higher than MAC/UF, MAC/NF, and for MAC/RO hybrid processes due to greater surface area of AC than MAC.

The catalytic activity of Pd/ZrO2 was studied in terms of the degradation of rhodamine-B dye in the presence of hydrogen peroxide. Pd/ZrO2 was prepared by impregnation method, calcined at 750 °C and characterized by XRD, SEM and EDX. The catalyst showed good catalytic activity for dye degradation at 333 K, using 0.05 g of the catalyst during 5 h. The reaction kinetics followed the pseudo-first order kinetics. The Freundlich, Langmuir and Temkin isotherms were applied to the data and the best fit was obtained with Freundlich isotherm. Thermodynamic parameters, like ΔH, ΔG and ΔS were also calculated. The negative values of ΔH (−291.406 KJ/mol) and Gibbs free energy (ΔG) showed the exothermic and spontaneous nature of the process. The positive ΔS (0.04832 KJ/mol K) value showed suitable affinity of catalyst for dye degradation. The catalyst was very stable, active and was easily separated from the reaction mixture by filtration. It can be concluded from the results that the prepared catalyst could be effectively used in dyes degradation/removal from water subjected to further validation and use for various dyes.

Paulownia tomentosa, a woody plant that is widely found in Pakistan and in other regions of the world, was used as a raw material to prepare activated carbon using chemical and physical activation methods. Adsorption of the dyes- acid red 4 and methylene blue onto the prepared activated carbon were analyzed by batch experiments. The impacts of different adsorption parameters such as pH, temperature, contact time, initial dye concentration and adsorbent dosage were also evaluated. Equilibrium data were fitted into various isotherm models such as: Langmuir, Temkin and Freundlich. High regression values were achieved with Langmuir isotherm model. Different kinetic adsorption models such as pseudo-first-order, pseudo-second-order and intra-particle diffusion model models were applied. The adsorption kinetics was found to be best-fitted into pseudo-second-order kinetic model. The optimum pH for acid red 4 was around 1 while for methylene blue it was 8. The optimum adsorbent dosage was 0.3 g for both dyes used. The activation energy (Ea) values were 30.57 and 3.712 kJ/mol, respectively for acid red 4 and methylene blue while the enthalpy (ΔH) and entropy (ΔS) values were correspondingly as 24.88/1.1927 kJ/mol and −2843.32/−0.329 J·mol/K for the mentioned dyes. The experimental result showed that the prepared activated carbon was the best in the removal of acid red 4 and methylene blue from aqueous media and therefore, could be preferably used as cheap adsorbent in wastewater treatment.

In the present study, we determined the levels of chlorinated pesticide residues in surface water samples collected from the Charsadda district (KPK, Pakistan). SPME-GC-ECD with COMBI PAL CTC autosampler was used for extraction and analysis of 20 organochlorine pesticides in the collected water samples. For maximum efficiency of the SPME procedure, several parameters were studied, including the extraction and desorption time of the fiber, solution pH, agitation of samples, and stirring speed, etc. This method showed good liner response, with R2 values in the range of 0.9887 to 0.9999 for all pesticides. This method also provided good percent recoveries at 1 µg L−1 (87.5 to 106.0%) and at 2 µg L−1 (88.5 to 109.2%). Lower limits of detection for all 20 chlorinated pesticides were found to be lower than their maximum permissible contamination levels. Approximately 50% of the surface water samples collected from the Charsadda district were found to be contaminated with the pesticides γ-BHC, heptachlor, aldrin and dieldrin, with maximum concentrations of 0.023, 0.108, 0.014 and 0.013 µg L−1, respectively. For adults and children, the cancer risk from water due to contamination by various pesticides ranged from 0 to 33.29 × 10−6. The non-carcinogenic risk from each pollutant in the water samples of the Charsadda district was found to be in the order of heptachlor &gt, aldrin &gt, dieldrin &gt, γ-BHC. However, the pesticides α-BHC, β-BHC, heptachlor epoxide, chlordane, endrin, 4,4′-DDD, endrin ketone, 4,4′-DDT, endosulfan sulfate and methoxychlor were not detected in any of the surface water samples of investigated in the present study.

An area of cold methane seeps at the bottom of the Laptev Sea was investigated. High rates of methane oxidation were revealed in the sediments and in the water column. Anaerobic methane oxidation c...

Recent developments in nanoscience have appreciably modified how diseases are prevented, diagnosed, and treated. Metal nanoparticles, specifically silver nanoparticles (AgNPs), are widely used in bioscience. From time to time, various synthetic methods for the synthesis of AgNPs are reported, i.e., physical, chemical, and photochemical ones. However, among these, most are expensive and not eco-friendly. The physicochemical parameters such as temperature, use of a dispersing agent, surfactant, and others greatly influence the quality and quantity of the synthesized NPs and ultimately affect the material’s properties. Scientists worldwide are trying to synthesize NPs and are devising methods that are easy to apply, eco-friendly, and economical. Among such strategies is the biogenic method, where plants are used as the source of reducing and capping agents. In this review, we intend to debate different strategies of AgNP synthesis. Although, different preparation strategies are in use to synthesize AgNPs such as electron irradiation, optical device ablation, chemical reduction, organic procedures, and photochemical methods. However, biogenic processes are preferably used, as they are environment-friendly and economical. The review covers a comprehensive discussion on the biological activities of AgNPs, such as antimicrobial, anticancer anti-inflammatory, and anti-angiogenic potentials of AgNPs. The use of AgNPs in water treatment and disinfection has also been discussed in detail.

Pd–Ni nanoparticles supported on activated carbon (Pd–Ni/AC) were prepared using a phase transfer method. The purpose of synthesizing ternary composites was to enhance the surface area of synthesized Pd–Ni nanoparticles, as they have a low surface area. The resulting composite was characterized by scanning electronic microscopy (SEM), X-ray diffraction (XRD) and energy-dispersive X-ray spectroscopy (EDX) for investigating its surface morphology, particle size, percentage of crystallinity and elemental composition, respectively. The XRD data and EDX analysis revealed the presence of Pd–Ni alloys impregnated on the AC. Pd–Ni/AC was used as an adsorbent for the removal of the azo dye basic blue 3 from an aqueous medium. Kinetic and isotherm models were used to calculate the adsorption parameters. The most suitable kinetic model amongst the applied models was the pseudo-second-order model, confirming the chemisorption characteristics of the process, and the most suitable isotherm model was the Langmuir model, with a maximum adsorption capacity of 333 mg/g at 333 K. Different experimental parameters, such as the adsorbent dosage, pH, temperature and contact time, were optimized. The optimum parameters reached were: a pH of 12, temperature of 333 K, adsorbent dosage of 0.01 g and optimum contact time of 30 min. Moreover, the thermodynamics parameters of adsorption, such as Gibbs free energy (ΔG°), enthalpy (ΔH°) and entropy (ΔS°), showed the adsorption processes being exothermic with values of ΔH° equal to −6.206 kJ/mol and being spontaneous with ΔG° values of −13.297, −13.780 and −14.264 kJ/mol, respectively at 293, 313 and 333 K. An increase in entropy change (ΔS°) with a value of 0.0242 kJ/mol K, indicated the enhanced disorder at a solid–solution interface during the adsorption process. Recycling the adsorbent for six cycles with sodium hydroxide and ethanol showed a decline in the efficiency of the selected azo dye basic blue 3 up to 79%. The prepared ternary composite was found effective in the removal of the selected dye. The removal of other pollutants represents one of the possible future uses of the prepared adsorbent, but further experiments are required.

In this study palladium-nickel (Pd-Ni) nanoparticles supported on carbon and cerium oxide (Pd-Ni/AC-CeO2) were synthesized by a transfer phase method and characterized by scanning electronic microscopy (SEM), X-ray diffraction (XRD), and energy-dispersive X-ray spectroscopy (EDX). The XRD and SEM data concluded the presence of alloy formation between Pd and Ni. The synthesized particles were used as an adsorbent for removal of azo dye acid orange-8 (AO-8) from water and were found to be effective in removal (over 90% removal efficiency) of the selected dye. Different kinetics and equilibrium models were applied to calculate the adsorption parameters. The most suitable model that best fitted the equilibrium data was the Langmuir model and maximum adsorption capacities were 666.6, 714 and 769 mg/g at 293, 313 and 333 K, respectively, with R2 values closed to 1 while in the case of the kinetics data the best fit was obtained with a pseudo-second order kinetics model with a high R2 value. Furthermore, the adsorption thermodynamics parameters such as free energy, enthalpy, and entropy were calculated and the adsorption process was to found be exothermic with a value of ΔH° (−7.593 kJ mol−1), spontaneous as ΔG° values were negative (−18.7327, −19.4870, and −20.584 kJ/mol at 293, 313 and 333 K, respectively). A positive entropy change ΔS° with a value of 0.0384 kJ /mol K indicates increased disorder at the solid–solution interface during the adsorption process. An attempt was made to recycle the Pd-Ni/AC-CeO2 with suitable solvents and the recycled adsorbent was reused for 6 cycles with AO-8 removal efficiency up to 80%. Based on findings of the study, the synthesized adsorbent could effectively be used for the removal of other pollutants from wastewater, however, further studies are needed to prove the mechanisms.

Although gas emission craters (GECs) are actively investigated, the question of which landforms result from GECs remains open. The evolution of GECs includes the filling of deep hollows with atmospheric precipitation and deposits from their retreating walls, so that the final stage of gas emission crater (GEC) lake development does not differ from that of any other lakes. Microbial activity and diversity may be indicators that make it possible to distinguish GEC lakes from other exogenous lakes. This work aimed at a comparison of the activity and diversity of microbial communities in young GEC lakes and mature background lakes of Central Yamal by using a radiotracer analysis and high-throughput sequencing of the 16S rRNA genes. The radiotracer analysis revealed slow-flowing microbial processes as expected for the cold climate of the study area. GEC lakes differed from background ones by slow rates of anaerobic processes (methanogenesis, sulfate reduction) as well as by a low abundance and diversity of methanogens. Other methane cycle micro-organisms (aerobic and anaerobic methanotrophs) were similar in all studied lakes and represented by Methylobacter and ANME 2d, the rates of methane oxidation were also similar. Actinobacteria, Bacteroidetes, Betaproteobacteria, and Acidobacteria were predominant in both lake types. Thus, GEC lakes may be identified by their scarce methanogenic population.

The Lake Bolshie Hruslomeny is located on the shores of the Kandalaksha Bay of the White Sea, North European Russia. This lake, formed from the sea bay and still retaining the subsurface connection with the sea, is meromictic, with a fresh oxygenated upper layer and an anoxic brackish hypolimnion with high concentrations of methane and hydrogen sulphide. To characterize the microbial communities involved in the carbon and sulfur cycles in the lake, we sequenced the metagenome of a water sample collected at the chemocline level. At the phylum level, Chlorobi, Proteobacteria, Bacteroidetes and Firmicutes were the most numerous groups. The obtained data will help investigate the diversity and ecological role of the microbial community in the Lake Bolshie Hruslomeny and provide insight into the biogeochemical processes in subarctic lakes. The raw sequencing data is available from the NCBI Sequence Read Archive (SRA) database under the BioProject PRJNA503531.

We sequenced the metagenome of a granular sludge in a nitritation/anammox bioreactor used for the treatment of ammonium-rich wastewater. Proteobacteria , Planctomycetes , Bacteroidetes , Chloroflexi , Ignavibacteriae , and Acidobacteria were the predominant phyla in the studied bioreactor. Binning of contigs yielded a near-complete genome of the dominant anammox bacterium assigned to the candidate genus Brocadia .

Microbial methanogenesis at extreme conditions of saline alkaline soda lakes has, so far, been poorly investigated. Despite the obvious domination of sulfidogenesis as the therminal anaerobic process in the hypersaline soda lakes of Kulunda Steppe (Altai, southwestern Siberia), high concentrations of methane were detected in the anaerobic sediments. Potential activity measurements with different substrates gave results significantly deviating from what is commonly found in hypersaline habitats with neutral pH. In particular, not only a non-competitive methylotrophic pathway was active, but also lithotrophic and, in some cases, even acetate-dependent methanogenesis was found to be present in hypersaline soda lake sediments. All three pathways were functioning exclusively within the alkaline pH range between 8 and 10.5, while the salt concentration was the key factor influencing the activity. Methylotrophic and, to a lesser extent, lithotrophic methanogenesis were active up to soda-saturating conditions (4 M total Na(+)). Acetate-dependent methanogenesis was observed at salinities below 3 M total Na(+). Detection of methanogens in sediments using the mcrA gene as a functional marker demonstrated domination of methylotrophic genera Methanolobus and Methanosalsum and lithotrophic Methanocalculus. In a few cases, acetoclastic Methanosaeta was detected, as well as two deep lineage methanogens. Cultivation results corresponded well to the mcrA-based observations. Enrichments for natronophilic methylotrophic methanogens resulted in isolation of Methanolobus strains at moderate salinity, while at salt concentrations above 2 M Na(+) a novel member of the genus Methanosalsum was dominating. Enrichments with H2 or formate invariably resulted in domination of close relatives of Methanocalculus natronophilus. Enrichments with acetate at low salt concentration yielded two acetoclastic alkaliphilic Methanosaeta cultures, while at salinity above 1 M Na(+) syntrophic associations were apparently responsible for the observed acetate conversion to methane. Overall, the results indicated the presence of functionally structured and active methanogenic populations in Siberian hypersaline soda lakes.

The Hakon Mosby mud volcano (the Norwegian Sea, depth c. 1250 m) was studied in July 1998 by a joint Russian–German–USA–Norwegian expedition on the 40th cruise of the RV Akademik Mstislav Keldysh using the two Mir submersibles. The benthic community is dominated by two species of symbiotrophic pogonophores, Sclerolinum contortum (more abundant) and Oligobrachia haakonmosbiensis. The biomass of S. contortum reaches at least 435 g m ; for O. haakonmosbiensis the value is 350 g m . Different benthic organisms form associations with each species of pogonophore. The total list of known benthic fauna includes 46 species. A zoarcid fish, Lycodes squamiventer, is a common member of the benthic community. Bacterial mats are found over an extensive part of the crater. The background benthic community is much poorer and is dominated by ophiuroids (Ophiocten gracilis, Ophiopleura borealis). Pycnogonids (Collossendeis proboscidea), buccinid gastropods and asteroids are also present. Stable carbon isotope data showed s...

The activity and culturable diversity of sulfidogens were investigated in anoxic sediments of four hypersaline lakes with pH 7.6–8.2 in the Kulunda Steppe (Altai, Russia). Sulfate reduction rates were low, varying from 0.1 to 6.0 nmol HS−/(cm3 h) with a maximum in the top 10 cm layer. Potential sulfidogenic rates with thiosulfate and sulfur as the e -acceptors were higher than with sulfate and were stimulated by formate, lactate, and acetate. Sulfidogenesis was optimal at salt concentrations below 2 M NaCl. Cultivation at 2 M NaCl resulted in the isolation of several strains of moderately halophilic SRB, but no growth of SRB was observed at 4 M NaCl. At lithotrophic conditions (i.e., with formate or H2 as e -donors), several closely related alkalitolerant strains belonging to the genus D esulfonatronovibrio were isolated. Enrichments at heterotrophic conditions with lactate, propionate, acetate, or butyrate using sulfate or thiosulfate as e -acceptors yielded isolates related to D esulfosalsimonas propionicica , D esulfohalobium utahense, and D esulfocella halophila . Sulfur-reducing enrichments at 2 M NaCl with ethanol produced a member of the genus H alanaerobium , while enrichments at 4 M NaCl with acetate were dominated by archaea, demonstrating for the first time such type of catabolism in haloarchaea.

Sulfidogenic activity (SA) in anoxic sediments of several soda lakes with variable salinity in south Kulunda Steppe (Altai, Russia) has been investigated. The study included in situ measurements of sulfate reduction rates and laboratory experiments with sediment slurries in which sulfate, thiosulfate or elemental sulfur were used as electron acceptors. Despite the extreme conditions (high salt concentrations and high pH), the SA values were relatively high (ranging from 0.02 to 1.20 micromol HS(-) cm(-3) h(-1)), and only hampered under salt-saturated conditions. The highest SA was observed with elemental sulfur, followed by thiosulfate, while the lowest SA was determined in the presence of sulfate. Of all the electron donors tested, the addition of formate resulted in the highest SA with all three sulfur electron acceptors. Surprisingly, hydrogen as an electron donor had very little effect. Acetate was utilized as an electron donor only under sulfur-reducing conditions. Indigenous populations of sulfidogens in soda lake sediments showed an obligately alkaliphilic pH response of SA, showing a pattern that corresponded well to the in situ pH conditions. Sulfate reduction was much more susceptible to salt inhibition than thiosulfate and sulfur reduction. Microbiological investigations indicated that sulfate-reducing bacteria belonging to the orders Desulfovibrionales and Desulfobacterales could very likely be responsible for the SA with sulfate and thiosulfate as electron acceptors at moderate salt concentrations. Sulfur reduction at moderate salinity was carried out by a specialized group of haloalkaliphilic sulfur-reducing bacteria that utilize volatile fatty acids. In saturated soda brine, extremely natronophilic representatives of the order Halanaerobiales were responsible for the sulfur-dependent respiration.

Sulfidogenic activity (SA) in anoxic sediments of several soda lakes with variable salinity in south Kulunda Steppe (Altai, Russia) has been investigated. The study included in situ measurements of sulfate reduction rates and laboratory experiments with sediment slurries in which sulfate, thiosulfate or elemental sulfur were used as electron acceptors. Despite the extreme conditions (high salt concentrations and high pH), the SA values were relatively high (ranging from 0.02 to 1.20 μmol HS− cm−3 h−1), and only hampered under salt-saturated conditions. The highest SA was observed with elemental sulfur, followed by thiosulfate, while the lowest SA was determined in the presence of sulfate. Of all the electron donors tested, the addition of formate resulted in the highest SA with all three sulfur electron acceptors. Surprisingly, hydrogen as an electron donor had very little effect. Acetate was utilized as an electron donor only under sulfur-reducing conditions. Indigenous populations of sulfidogens in soda lake sediments showed an obligately alkaliphilic pH response of SA, showing a pattern that corresponded well to the in situ pH conditions. Sulfate reduction was much more susceptible to salt inhibition than thiosulfate and sulfur reduction. Microbiological investigations indicated that sulfate-reducing bacteria belonging to the orders Desulfovibrionales and Desulfobacterales could very likely be responsible for the SA with sulfate and thiosulfate as electron acceptors at moderate salt concentrations. Sulfur reduction at moderate salinity was carried out by a specialized group of haloalkaliphilic sulfur-reducing bacteria that utilize volatile fatty acids. In saturated soda brine, extremely natronophilic representatives of the order Halanaerobiales were responsible for the sulfur-dependent respiration.

A novel, moderately thermophilic, strictly anaerobic, mixotrophic bacterium, designated strain LF13T, was isolated from a deep-sea hydrothermal chimney sample that was collected at a vent site at 14 degrees 45' N, 44 degrees 59' W on the Mid-Atlantic Ridge. Cells were Gram-negative, thin, non-motile rods of variable length. Strain LF13T grew optimally at pH 6.8-7.0 and 60 degrees C with 2.5% (w/v) NaCl. It grew chemo-organoheterotrophically, fermenting proteinaceous substrates, pyruvate and Casamino acids. The strain was able to grow by respiration, utilizing molecular hydrogen (chemolithoheterotrophically) or acetate as electron donors and nitrate as an electron acceptor. Ammonium was formed in the course of denitrification. One-hundred milligrams of yeast extract per litre were required for growth of the strain. The G + C content of the genomic DNA of strain LF13T was 42.5 mol%. Neither 16S rDNA sequence similarity values nor phylogenetic analysis unambiguously related strain LF13T with members of any recognized bacterial phyla. On the basis of 16S rDNA sequence comparisons, and in combination with physiological and morphological traits, a novel genus, Caldithrix, is proposed, with strain LF13T (= DSM 13497T =VKM B-2286T) representing the type species, Caldithrix abyssi.

Massive microbial mats covering up to 4-meter-high carbonate buildups prosper at methane seeps in anoxic waters of the northwestern Black Sea shelf. Strong 13 C depletions indicate an incorporation of methane carbon into carbonates, bulk biomass, and specific lipids. The mats mainly consist of densely aggregated archaea (phylogenetic ANME-1 cluster) and sulfate-reducing bacteria ( Desulfosarcina/Desulfococcus group). If incubated in vitro, these mats perform anaerobic oxidation of methane coupled to sulfate reduction. Obviously, anaerobic microbial consortia can generate both carbonate precipitation and substantial biomass accumulation, which has implications for our understanding of carbon cycling during earlier periods of Earth's history.