5 results on '"Nikita A. Khlystov"'
Search Results
2. Enhanced Bioavailability and Microbial Biodegradation of Polystyrene in an Enrichment Derived from the Gut Microbiome of Tenebrio molitor (Mealworm Larvae)
- Author
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Anja Malawi Brandon, Craig S. Criddle, Alexa Garcia, Nikita A. Khlystov, and Wei-Min Wu
- Subjects
Mealworm ,biology ,Microorganism ,Gastrointestinal Microbiome ,General Chemistry ,010501 environmental sciences ,Biodegradation ,biology.organism_classification ,01 natural sciences ,Citrobacter freundii ,Bioavailability ,Microbiology ,Serratia marcescens ,Environmental Chemistry ,Microbial biodegradation ,0105 earth and related environmental sciences - Abstract
As the global threat of plastic pollution has grown in scale and urgency, so have efforts to find sustainable and efficient solutions. Research conducted over the past few years has identified gut environments within insect larvae, including Tenebrio molitor (yellow mealworms), as microenvironments uniquely suited to rapid plastic biodegradation. However, there is currently limited understanding of how the insect host and its gut microbiome collaborate to create an environment conducive to plastic biodegradation. In this work, we provide evidence that T. molitor secretes one or more emulsifying factor(s) (30-100 kDa) that mediate plastic bioavailability. We also demonstrate that the insect gut microbiome secretes factor(s) (
- Published
- 2021
- Full Text
- View/download PDF
3. A plant host, Nicotiana benthamiana, enables the production and study of fungal lignin-degrading enzymes
- Author
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Elizabeth S. Sattely, Samuel Deutsch, Yasuo Yoshikuni, and Nikita A. Khlystov
- Subjects
Expression systems ,QH301-705.5 ,Commodity chemicals ,Genes, Fungal ,Medicine (miscellaneous) ,Nicotiana benthamiana ,Genetically Modified ,Context (language use) ,macromolecular substances ,Lignin ,complex mixtures ,Article ,General Biochemistry, Genetics and Molecular Biology ,chemistry.chemical_compound ,Tobacco ,Biology (General) ,Gene ,Bond cleavage ,chemistry.chemical_classification ,biology ,Chemistry ,fungi ,technology, industry, and agriculture ,food and beverages ,Plants ,Plants, Genetically Modified ,Crop waste ,biology.organism_classification ,Fungal ,Enzyme ,Peroxidases ,Genes ,Biochemistry ,Biocatalysis ,biology.protein ,Plant biotechnology ,General Agricultural and Biological Sciences ,Peroxidase - Abstract
Lignin has significant potential as an abundant and renewable source for commodity chemicals yet remains vastly underutilized. Efforts towards engineering a biochemical route to the valorization of lignin are currently limited by the lack of a suitable heterologous host for the production of lignin-degrading enzymes. Here, we show that expression of fungal genes in Nicotiana benthamiana enables production of members from seven major classes of enzymes associated with lignin degradation (23 of 35 tested) in soluble form for direct use in lignin activity assays. We combinatorially characterized a subset of these enzymes in the context of model lignin dimer oxidation, revealing that fine-tuned coupling of peroxide-generators to peroxidases results in more extensive C-C bond cleavage compared to direct addition of peroxide. Comparison of peroxidase isoform activity revealed that the extent of C-C bond cleavage depends on peroxidase identity, suggesting that peroxidases are individually specialized in the context of lignin oxidation. We anticipate the use of N. benthamiana as a platform to rapidly produce a diverse array of fungal lignin-degrading enzymes will facilitate a better understanding of their concerted role in nature and unlock their potential for lignin valorization, including within the plant host itself., Khlystov et al. introduce a new plant-based system (N. benthamiana) as a platform to rapidly produce a diverse array of recombinant fungal lignin-degrading enzymes. This study provides an initial framework to better understand the coordinated efforts of various lignin-degrading enzymes during fungal lignin deconstruction in nature.
- Published
- 2021
- Full Text
- View/download PDF
4. Material properties of the cyanobacterial reserve polymer multi-l-arginyl-poly-l-aspartate (cyanophycin)
- Author
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Kristala L. J. Prather, Aditya M. Kunjapur, Weichao Shi, Wui Yarn Chan, Nikita A. Khlystov, and Bradley D. Olsen
- Subjects
0301 basic medicine ,chemistry.chemical_classification ,Materials science ,Polymers and Plastics ,Cyanophycin ,Organic Chemistry ,02 engineering and technology ,Polymer ,engineering.material ,021001 nanoscience & nanotechnology ,Amorphous solid ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,Biochemistry ,chemistry ,Chemical engineering ,Materials Chemistry ,engineering ,Thermal stability ,Biopolymer ,0210 nano-technology ,Glass transition ,Ionomer ,Macromolecule - Abstract
Bio-sourced macromolecules such as cyanophycin are an attractive source for alternative, sustainable plastics. While the chemical structure and biological function of cyanophycin have been previously investigated, its material properties remain largely unexplored. This study investigates the structural, thermal, mechanical, and solution properties of cyanophycin produced from recombinant Escherichia coli . Unplasticized, it has an elastic compression modulus of about 560 MPa and undergoes brittle failure at 78 MPa. Cyanophycin exhibits thermal stability in air up to 200 °C and does not undergo glass transition within its limit of thermal stability. The polypeptide is amorphous and has no long-range ordering in the solid state. In solution, water-soluble cyanophycin is thermoresponsive, exhibiting both upper and lower critical solution temperatures. Because the feasibility of industrial scale cyanophycin production through fermentation has been well studied, an expanded understanding of its materials properties should contribute to the development of new applications for this biopolymer.
- Published
- 2017
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- View/download PDF
5. A plant host enables the heterologous production and combinatorial study of fungal lignin-degrading enzymes
- Author
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Elizabeth S. Sattely, Nikita A. Khlystov, Yasuo Yoshikuni, and Samuel Deutsch
- Subjects
chemistry.chemical_classification ,biology ,Commodity chemicals ,fungi ,technology, industry, and agriculture ,food and beverages ,Heterologous ,Nicotiana benthamiana ,Context (language use) ,macromolecular substances ,biology.organism_classification ,complex mixtures ,chemistry.chemical_compound ,Enzyme ,chemistry ,Biochemistry ,biology.protein ,Lignin ,Bond cleavage ,Peroxidase - Abstract
Lignin has significant potential as an abundant and renewable source for commodity chemicals yet remains vastly underutilized. Efforts towards engineering a biochemical route to the valorization of lignin are currently limited by the lack of a suitable heterologous host for the production of lignin-degrading enzymes. Here, we show that expression of fungal genes inNicotiana benthamianaenables production of members from seven major classes of enzymes associated with lignin degradation (23 of 35 tested) in soluble form for direct use in lignin activity assays. We combinatorially characterized a subset of these enzymes in the context of model lignin dimer oxidation, revealing that fine-tuned coupling of peroxide-generators to peroxidases results in more extensive C-C bond cleavage compared to direct addition of peroxide. Comparison of peroxidase isoform activity revealed that the extent of C-C bond cleavage depends on peroxidase identity, suggesting that peroxidases are individually specialized in the context of lignin oxidation. We anticipate the use ofN. benthamianaas a platform to rapidly produce a diverse array of fungal lignin-degrading enzymes will facilitate a better understanding of their concerted role in nature and unlock their potential for lignin valorization, including within the plant host itself.
- Published
- 2019
- Full Text
- View/download PDF
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