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1. Gene Arrays atPneumocystis cariniiTelomeres

Author

Ann E. Wakefield, Carolyn J. Tindal, T. Warren, David J. Harris, Eduard Zuiderwijk, Sarah Sharp, Kathy Seeger, Nigel Fosker, James R. Stringer, Barclay G. Barrell, Audrey Fraser, Melanie T. Cushion, Hubert Renauld, Claire Price, Michael A. Quail, Neil Hall, Lee Murphy, Scott P. Keely, and A. George Smulian

Subjects
Antigens, Fungal, Genetic Linkage, Sequence analysis, Genes, Fungal, Investigations, Biology, Pneumocystis carinii, Evolution, Molecular, Open Reading Frames, Gene Duplication, Gene Expression Regulation, Fungal, Sequence Homology, Nucleic Acid, Gene cluster, Gene duplication, Genetics, Gene family, Amino Acid Sequence, RNA, Messenger, Cloning, Molecular, Selection, Genetic, DNA, Fungal, Gene, Gene Library, Repetitive Sequences, Nucleic Acid, Recombination, Genetic, Regulation of gene expression, Base Sequence, Chromosome Mapping, Sequence Analysis, DNA, Telomere, Cosmids, Subtelomere, Chromosomes, Fungal, Genome, Fungal
Abstract

In the fungus Pneumocystis carinii, at least three gene families (PRT1, MSR, and MSG) have the potential to generate high-frequency antigenic variation, which is likely to be a strategy by which this parasitic fungus is able to prolong its survival in the rat lung. Members of these gene families are clustered at chromosome termini, a location that fosters recombination, which has been implicated in selective expression of MSG genes. To gain insight into the architecture, evolution, and regulation of these gene clusters, six telomeric segments of the genome were sequenced. Each of the segments began with one or more unique genes, after which were members of different gene families, arranged in a head-to-tail array. The three-gene repeat PRT1-MSR-MSG was common, suggesting that duplications of these repeats have contributed to expansion of all three families. However, members of a gene family in an array were no more similar to one another than to members in other arrays, indicating rapid divergence after duplication. The intergenic spacers were more conserved than the genes and contained sequence motifs also present in subtelomeres, which in other species have been implicated in gene expression and recombination. Long mononucleotide tracts were present in some MSR genes. These unstable sequences can be expected to suffer frequent frameshift mutations, providing P. carinii with another mechanism to generate antigen variation.

Published
2005

2. The Genome of the Kinetoplastid Parasite,Leishmania major

Author

Kathy Seeger, G. Bothe, Rob Squares, Lee Murphy, Valentina Tosato, Michael A. Quail, Angela Lord, Alasdair Ivens, Christopher S. Peacock, Simon Rutter, Joel Rinta, Audrey Fraser, Dhileep Sivam, Carlo V. Bruschi, Nigel Fosker, Arlette Goble, Jenefer M. Blackwell, Silke Müller-Auer, K. Borzym, Robert L. Davies, Heather Munden, Holger Wedler, André Goffeau, Ellen Adlem, Christy Vogt, Susan O'Neil, David C. Schwartz, Siri Nelson, Bénédicte Purnelle, Angela K. Cruz, Martin Pentony, Deborah F. Smith, Michael A. Rieger, Laura Ciarloni, Kenneth Stuart, Marco A. Marra, Sven Klages, David L. Saunders, Alfred Beck, Marie-Adèle Rajandream, David Masuy, Andrew J Knights, Atashi Anupama, Karen Oliver, Helmut Hilbert, Rolf Wambutt, David Harris, Gabriella Bianchettin, Sarah Sharp, Nathalie Bason, Alberto C.C. Frasch, Matt Collins, Heesun Shin, Jeronimo C. Ruiz, Jeremy C. Mottram, David Horn, Richard M.R. Coulson, Elizabeth A. Worthey, Amber Seyler, Christopher Bauser, Natasha Larke, Bart Barrell, Ester Rabbinowitsch, John Woodward, Zina Apostolou, Christine Clayton, Christiane Hertz-Fowler, Ellen Sisk, Steve Squares, Gholam Fazelina, Laura Robertson, Johan Robben, T. Warren, Halina Norbertczak, Javier G. De Gaudenzi, Monika Fuchs, Shulamit Michaeli, Matthew Berriman, Claudia Gabel, Melanie Schäfer, Peter J. Myler, Thomas M. Pohl, Tin Louie, Rita Aert, Claire Price, Stephen M. Beverley, Guido Volckaert, Deborah E. Dobson, Richard Reinhardt, Lyudmila Litvin, Andreas Duesterhoeft, Ann Cronin, Jacquie Schein, Shiguo Zhou, Wolfgang Zimmermann, Gautam Aggarwal, Eithon Cadag, Yiting Huang, Michael Kube, Philip Attipoe, and Keith R. Matthews

Subjects
Transcription, Genetic, RNA Splicing, Pseudogene, family encoding amastin, Genes, Protozoan, Molecular Sequence Data, Protozoan Proteins, Leishmaniasis, Cutaneous, Biology, Genome, Article, chemistry.chemical_compound, Transcription (biology), RNA polymerase, parasitic diseases, Animals, RNA Processing, Post-Transcriptional, gene, Gene, Leishmania major, Genetics, Multidisciplinary, General transcription factor, Proteolytic enzymes, Membrane Proteins, RNA, Genes, rRNA, differentiation, Sequence Analysis, DNA, organization, Lipid Metabolism, pre-messenger-rna, Chromatin, Gene Expression Regulation, chemistry, Multigene Family, Protein Biosynthesis, friedlin chromosome-1, trypanosoma-brucei, cruzi, transcription, protein, Genome, Protozoan, Glycoconjugates, Protein Processing, Post-Translational, RNA, Protozoan
Abstract

Leishmaniaspecies cause a spectrum of human diseases in tropical and subtropical regions of the world. We have sequenced the 36 chromosomes of the 32.8-megabase haploid genome ofLeishmania major(Friedlin strain) and predict 911 RNA genes, 39 pseudogenes, and 8272 protein-coding genes, of which 36% can be ascribed a putative function. These include genes involved in host-pathogen interactions, such as proteolytic enzymes, and extensive machinery for synthesis of complex surface glycoconjugates. The organization of protein-coding genes into long, strand-specific, polycistronic clusters and lack of general transcription factors in theL. major, Trypanosoma brucei, andTrypanosoma cruzi(Tritryp) genomes suggest that the mechanisms regulating RNA polymerase II–directed transcription are distinct from those operating in other eukaryotes, although the trypanosomatids appear capable of chromatin remodeling. Abundant RNA-binding proteins are encoded in the Tritryp genomes, consistent with active posttranscriptional regulation of gene expression.

Published
2005

3. Genome of the Host-Cell Transforming Parasite Theileria annulata Compared with T. parva

Author

Simon Rutter, Neil D. Rawlings, P. Mooney, Gordon Langsley, Malcolm J. Gardner, Richard M.R. Coulson, Vishvanath Nene, Angela Lord, Dirk A. E. Dobbelaere, Arnab Pain, John Woodward, Andrew Tait, Marie Adele Rajandream, Alan R. Walker, Trushar Shah, William Weir, David L. Saunders, Ester Rabbinowitsch, Kathy Seeger, David Harris, Madeleine Cochet, Michael A. Quail, Arnaud Kerhornou, Frank Katzer, Christiane Bouchier, Claire Price, Matthew Berriman, Natasha Larke, Bart Barrell, Ann Cronin, Audrey Fraser, Arlette Goble, Neil Hall, Declan J. McKeever, Brian Shiels, Martin Aslett, Sam Griffiths-Jones, Sue McKellar, Fraser R. Morton, R. Squares, Nigel Fosker, Corin Yeats, Pascal Mäser, Hubert Renauld, Lee Murphy, Susan O'Neil, Adrian Tivey, S. Squares, Richard P. Bishop, and Etienne P. de Villiers

Subjects
Genetics, Multidisciplinary, Sequence analysis, Theileria parva, parasitic diseases, Theileria, Gene family, Biology, biology.organism_classification, Genome, Gene, Tropism, Synteny
Abstract

Theileria annulata and T. parva are closely related protozoan parasites that cause lymphoproliferative diseases of cattle. We sequenced the genome of T. annulata and compared it with that of T. parva to understand the mechanisms underlying transformation and tropism. Despite high conservation of gene sequences and synteny, the analysis reveals unequally expanded gene families and species-specific genes. We also identify divergent families of putative secreted polypeptides that may reduce immune recognition, candidate regulators of host-cell transformation, and a Theileria -specific protein domain [frequently associated in Theileria (FAINT)] present in a large number of secreted proteins.

Published
2005

4. The zebrafish reference genome sequence and its relationship to the human genome

Author

Kerstin Howe, Matthew D. Clark, Carlos F. Torroja, James Torrance, Camille Berthelot, Matthieu Muffato, John E. Collins, Sean Humphray, Karen McLaren, Lucy Matthews, Stuart McLaren, Ian Sealy, Mario Caccamo, Carol Churcher, Carol Scott, Jeffrey C. Barrett, Romke Koch, Gerd-Jörg Rauch, Simon White, William Chow, Britt Kilian, Leonor T. Quintais, José A. Guerra-Assunção, Yi Zhou, Yong Gu, Jennifer Yen, Jan-Hinnerk Vogel, Tina Eyre, Seth Redmond, Ruby Banerjee, Jianxiang Chi, Beiyuan Fu, Elizabeth Langley, Sean F. Maguire, Gavin K. Laird, David Lloyd, Emma Kenyon, Sarah Donaldson, Harminder Sehra, Jeff Almeida-King, Jane Loveland, Stephen Trevanion, Matt Jones, Mike Quail, Dave Willey, Adrienne Hunt, John Burton, Sarah Sims, Kirsten McLay, Bob Plumb, Joy Davis, Chris Clee, Karen Oliver, Richard Clark, Clare Riddle, David Elliott, Glen Threadgold, Glenn Harden, Darren Ware, Sharmin Begum, Beverley Mortimore, Giselle Kerry, Paul Heath, Benjamin Phillimore, Alan Tracey, Nicole Corby, Matthew Dunn, Christopher Johnson, Jonathan Wood, Susan Clark, Sarah Pelan, Guy Griffiths, Michelle Smith, Rebecca Glithero, Philip Howden, Nicholas Barker, Christine Lloyd, Christopher Stevens, Joanna Harley, Karen Holt, Georgios Panagiotidis, Jamieson Lovell, Helen Beasley, Carl Henderson, Daria Gordon, Katherine Auger, Deborah Wright, Joanna Collins, Claire Raisen, Lauren Dyer, Kenric Leung, Lauren Robertson, Kirsty Ambridge, Daniel Leongamornlert, Sarah McGuire, Ruth Gilderthorp, Coline Griffiths, Deepa Manthravadi, Sarah Nichol, Gary Barker, Siobhan Whitehead, Michael Kay, Jacqueline Brown, Clare Murnane, Emma Gray, Matthew Humphries, Neil Sycamore, Darren Barker, David Saunders, Justene Wallis, Anne Babbage, Sian Hammond, Maryam Mashreghi-Mohammadi, Lucy Barr, Sancha Martin, Paul Wray, Andrew Ellington, Nicholas Matthews, Matthew Ellwood, Rebecca Woodmansey, Graham Clark, James D. Cooper, Anthony Tromans, Darren Grafham, Carl Skuce, Richard Pandian, Robert Andrews, Elliot Harrison, Andrew Kimberley, Jane Garnett, Nigel Fosker, Rebekah Hall, Patrick Garner, Daniel Kelly, Christine Bird, Sophie Palmer, Ines Gehring, Andrea Berger, Christopher M. Dooley, Zübeyde Ersan-Ürün, Cigdem Eser, Horst Geiger, Maria Geisler, Lena Karotki, Anette Kirn, Judith Konantz, Martina Konantz, Martina Oberländer, Silke Rudolph-Geiger, Mathias Teucke, Christa Lanz, Günter Raddatz, Kazutoyo Osoegawa, Baoli Zhu, Amanda Rapp, Sara Widaa, Cordelia Langford, Fengtang Yang, Stephan C. Schuster, Nigel P. Carter, Jennifer Harrow, Zemin Ning, Javier Herrero, Steve M. J. Searle, Anton Enright, Robert Geisler, Ronald H. A. Plasterk, Charles Lee, Monte Westerfield, Pieter J. de Jong, Leonard I. Zon, John H. Postlethwait, Christiane Nüsslein-Volhard, Tim J. P. Hubbard, Hugues Roest Crollius, Jane Rogers, Derek L. Stemple, and Hubrecht Institute for Developmental Biology and Stem Cell Research

Subjects
Genetics, 0303 health sciences, Genome evolution, Multidisciplinary, Gene prediction, Pseudogene, Genome project, Biology, biology.organism_classification, Genome, Article, 03 medical and health sciences, 0302 clinical medicine, Gene density, Zebrafish, 030217 neurology & neurosurgery, 030304 developmental biology, Reference genome
Abstract

Zebrafish have become a popular organism for the study of vertebrate gene function1,2. The virtually transparent embryos of this species, and the ability to accelerate genetic studies by gene knockdown or overexpression, have led to the widespread use of zebrafish in the detailed investigation of vertebrate gene function and increasingly, the study of human genetic disease3–5. However, for effective modelling of human genetic disease it is important to understand the extent to which zebrafish genes and gene structures are related to orthologous human genes. To examine this, we generated a high-quality sequence assembly of the zebrafish genome, made up of an overlapping set of completely sequenced large-insert clones that were ordered and oriented using a high-resolution high-density meiotic map. Detailed automatic and manual annotation provides evidence of more than 26,000 protein-coding genes6, the largest gene set of any vertebrate so far sequenced. Comparison to the human reference genome shows that approximately 70% of human genes have at least one obvious zebrafish orthologue. In addition, the high quality of this genome assembly provides a clearer understanding of key genomic features such as a unique repeat content, a scarcity of pseudogenes, an enrichment of zebrafish-specific genes on chromosome 4 and chromosomal regions that influence sex determination.

Published
2013

5. Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus

Author

S. Squares, Simon Rutter, William C. Nierman, David B. Archer, Sven Konzack, H. Stanley Kim, Michael A. Quail, Jae-Hyuk Yu, Miguel A. Peñalva, Mark L. Farman, Neil Rawlins, Claire Price, Natalie D. Fedorova, Fredj Tekaia, Matthew Berriman, Sam Griffith-Jones, Robert L. Davies, David W. Denning, Hubert Renauld, Katsuhiko Kitamoto, Jennifer R. Wortman, Claire M. Fraser, Isabelle Mouyna, Brian J. Haas, H. Khouri, Sean Humphray, Resham Kulkarni, Anne Lafton, James E. Galagan, John Woodward, Juan C. Sánchez-Ferrero, Michel Monod, Neil Hall, J. Weidman, Owen White, Ariette Goble, Stephanie Mulligan, Marie Adele Rajandream, Matthew Collins, José Luis García, Michio Takeuchi, Gregory S. May, Santiago Rodríguez de Córdoba, Ian T. Paulsen, T. Feldblyum, Dan Chen, Bethan L. Pritchard, Kathy Seeger, Charles Lu, William H. Majoros, Geoffrey D. Robson, Steven L. Salzberg, Javier Arroyo, Bruce L. Miller, Susan O'Neil, Paul Bowyer, María Molina, Javier Jiménez, Rob Squares, Gustavo H. Goldman, Masayuki Machida, Keietsu Abe, Mihaela Pertea, H. Horiuchi, Nancy P. Keller, Lee Murphy, Jiaqi Huang, Carlos R. Vázquez de Aldana, Nigel Fosker, Nadia Fedorova, Richard Coulsen, Angela Lord, Kiyoshi Asai, Yasmin Ali Mohamoud, Bart Barrell, Toshitaka Kumagai, Paul S. Dyer, Michael J. Anderson, Weixi Li, David L. Saunders, David Harris, Katsuya Gomi, María Josefa Marcos García, José Manuel Rodríguez-Peña, Tetsuo Kobayashi, Miguel del Nogal Sánchez, Audrey Fraser, Geoffrey Turner, Utz Reichard, Arnab Pain, Reinhard Fischer, Catherine M. Ronning, Hubertus Haas, Jean-Paul Latgé, Ester Rabbinowitsch, Joan W. Bennett, Clara Bermejo, R. Gwilliam, The George Washington University (GW), Institute for Genome Sciences [Baltimore], University of Maryland [Baltimore], The Wellcome Trust Sanger Institute [Cambridge], University of Manchester [Manchester], Universidad Complutense de Madrid = Complutense University of Madrid [Madrid] (UCM), Tohoku University [Sendai], University of Nottingham, UK (UON), University of Kentucky (UK), Faculdade de Ciências Farmacêuticas de Ribeirão Preto [São Paulo], Universidade de São Paulo = University of São Paulo (USP), Innsbruck Medical University = Medizinische Universität Innsbruck (IMU), University of Wisconsin-Madison, Biologie et Pathogénicité fongiques (BPF), Institut National de la Recherche Agronomique (INRA)-Institut Pasteur [Paris] (IP), Aspergillus, Institut Pasteur [Paris] (IP), Centre Hospitalier Universitaire Vaudois [Lausanne] (CHUV), Broad Institute of MIT and Harvard (BROAD INSTITUTE), Harvard Medical School [Boston] (HMS)-Massachusetts Institute of Technology (MIT)-Massachusetts General Hospital [Boston], National Institute of Advanced Industrial Science and Technology (AIST), Initial work was funded by the Fungal Research Trust and Burroughs Wellcome Fund. Major funding came from the National Institute of Allergy and Infectious Diseases (NIAID), the Wellcome Trust and the Fondo de Investigaciones Sanitarias. Construction of the Af293 microarray was funded by NIAID. Additional BAC end sequencing was funded internally by the Institut Pasteur., University of Kentucky, Universidade de São Paulo (USP), Innsbruck Medical University [Austria] (IMU), Biologie et Pathogénicité fongiques, Institut Pasteur [Paris]-Institut National de la Recherche Agronomique (INRA), and Institut Pasteur [Paris]

Subjects
MESH: Sequence Analysis, DNA, MESH: Allergens, Sequence analysis, MESH: Hypersensitivity, Fungus, MESH: Virulence, Genome, Microbiology, Aspergillus fumigatus, 03 medical and health sciences, MESH: Gene Expression Profiling, Gene, [SDV.MP.MYC]Life Sciences [q-bio]/Microbiology and Parasitology/Mycology, 030304 developmental biology, Genetics, Whole genome sequencing, 0303 health sciences, Multidisciplinary, MESH: Molecular Sequence Data, biology, 030306 microbiology, MESH: Genomics, Fungal genetics, biology.organism_classification, Phenotype, MESH: Temperature, MESH: Genome, Fungal, MESH: Oligonucleotide Array Sequence Analysis, MESH: Aspergillus fumigatus, MESH: Genes, Fungal, MESH: Gene Expression Regulation, Fungal
Abstract

International audience; Aspergillus fumigatus is exceptional among microorganisms in being both a primary and opportunistic pathogen as well as a major allergen. Its conidia production is prolific, and so human respiratory tract exposure is almost constant. A. fumigatus is isolated from human habitats and vegetable compost heaps. In immunocompromised individuals, the incidence of invasive infection can be as high as 50% and the mortality rate is often about 50% (ref. 2). The interaction of A. fumigatus and other airborne fungi with the immune system is increasingly linked to severe asthma and sinusitis. Although the burden of invasive disease caused by A. fumigatus is substantial, the basic biology of the organism is mostly obscure. Here we show the complete 29.4-megabase genome sequence of the clinical isolate Af293, which consists of eight chromosomes containing 9,926 predicted genes. Microarray analysis revealed temperature-dependent expression of distinct sets of genes, as well as 700 A. fumigatus genes not present or significantly diverged in the closely related sexual species Neosartorya fischeri, many of which may have roles in the pathogenicity phenotype. The Af293 genome sequence provides an unparalleled resource for the future understanding of this remarkable fungus.

Published
2005

6. Insight into the genome of Aspergillus fumigatus: analysis of a 922 kb region encompassing the nitrate assimilation gene cluster

Author

Lee Murphy, Claire Price, Arnab Pain, Sean Humphray, John Woodward, Richard Clark, T. Warren, Neil Hall, Kathy Seeger, David Harris, Marie Adele Rajandream, Susan O'Neil, Michael J. Anderson, Sarah Sharp, Michael A. Quail, Matthew Collins, David W. Denning, David L. Saunders, Natasha Larke, Bart Barrell, Steven L. Salzberg, Mihaela Pertea, Ester Rabbinowitsch, Nigel Fosker, and Audrey Fraser

Subjects
Chromosomes, Artificial, Bacterial, Molecular Sequence Data, Quinic Acid, Saccharomyces cerevisiae, Microbiology, Genome, Synteny, Aspergillus nidulans, Aspergillus fumigatus, Fungal Proteins, Open Reading Frames, Gene cluster, Gene Order, Genetics, DNA, Fungal, Gene, Comparative genomics, Bacterial artificial chromosome, Nitrates, biology, Membrane Transport Proteins, Genomics, Sequence Analysis, DNA, biology.organism_classification, Introns, Enzymes, Multigene Family, DNA, Intergenic, Genome, Fungal
Abstract

Aspergillus fumigatus is the most ubiquitous opportunistic filamentous fungal pathogen of human. As an initial step toward sequencing the entire genome of A. fumigatus, which is estimated to be approximately 30 Mb in size, we have sequenced a 922 kb region, contained within 16 overlapping bacterial artificial chromosome (BAC) clones. Fifty-four percent of the DNA is predicted to be coding with 341 putative protein coding genes. Functional classification of the proteins showed the presence of a higher proportion of enzymes and membrane transporters when compared to those of Saccharomyces cerevisiae. In addition to the nitrate assimilation gene cluster, the quinate utilisation gene cluster is also present on this 922 kb genomic sequence. We observed large scale synteny between A. fumigatus and Aspergillus nidulans by comparing this sequence to the A. nidulans genetic map of linkage group VIII.

Published
2003

7. Erratum: Corrigendum: The zebrafish reference genome sequence and its relationship to the human genome

Author

Alan Tracey, Lucy Barr, Karen Holt, Stephen J. Trevanion, Bob Plumb, Daniel Leongamornlert, Paul Wray, Carol Churcher, J. C. Davis, Ruth Gilderthorp, Christine Lloyd, Adrienne Hunt, Michelle Smith, Britt Kilian, Martina Konantz, Jeff Almeida-King, Richard M. Clark, Nick Barker, Kirsty Ambridge, Susan J. Clark, Karen Oliver, Glen Threadgold, Yong Gu, Jane E. Loveland, David Lloyd, Guy Griffiths, Ronald H.A. Plasterk, Karen McLaren, Sarah Pelan, Sarah Nichol, Kenric Leung, Rebecca Woodmansey, Sharmin Begum, Cigdem Eser, Sophie Palmer, Jacqueline Brown, Ian M Sealy, James Torrance, J Lovell, John E. Collins, Sara Widaa, A M Kimberley, A Tromans, Richard Pandian, Judith Konantz, Maria Geisler, Carlos Torroja, N Sycamore, Sancha Martin, Darren Barker, Amanda Rapp, Monte Westerfield, Silke Rudolph-Geiger, Zemin Ning, José Afonso Guerra-Assunção, Clare Riddle, Rebecca Glithero, Daniel P. Kelly, Nicholas Matthews, Pieter J. de Jong, Nigel P. Carter, Camille Berthelot, Fengtang Yang, A K Babbage, Graham Clark, Andrea Berger, Robert Andrews, C Griffiths, Jennifer Harrow, Gerd Jörg Rauch, Steve Searle, J. M. Wallis, Christa Lanz, Ruby Banerjee, William Chow, Jan Hinnerk Vogel, Matthieu Muffato, David Elliott, Mathias Teucke, Derek L. Stemple, Debbie E. Wright, Deepa Manthravadi, Gavin K. Laird, Sarah Sims, M Mashreghi-Mohammadi, David S. Saunders, Lena Karotki, P Garner, Paul Heath, Jane Rogers, Ines Gehring, J Garnett, Charles Lee, Philip Howden, John H. Postlethwait, Robert Geisler, Sarah Donaldson, Elizabeth Langley, Claire Raisen, Katherine Auger, Javier Herrero, Beiyuan Fu, Carol Scott, Zübeyde Ersan-Ürün, Mario Caccamo, Sean Humphray, Gary L A Barker, S. Whitehead, Darren Ware, Baoli Zhu, Jianxiang Chi, Jonathan Wood, Nigel Fosker, Sarah McGuire, Stephan C. Schuster, Chris Clee, Martina Oberländer, Daria Gordon, Clare Murnane, Romke Koch, Emma Gray, Beverley J. Mortimore, Harminder Sehra, Joanna Collins, Hugues Roest Crollius, Kirsten McLay, Kerstin Howe, Lauren Dyer, Christopher Stevens, Andrew D. Ellington, Kazutoyo Osoegawa, Stuart McLaren, Christopher N. Johnson, Giselle Kerry, Helen Beasley, Georgios Panagiotidis, Christiane Nüsslein Volhard, Tina Eyre, Horst Geiger, Jennifer Yen, Matthew Ellwood, Christine P. Bird, N Corby, Matthew Dunn, Darren Grafham, Günter Raddatz, Matthew Humphries, Anette Kirn, Yi Zhou, James D. Cooper, John Burton, Simon D. M. White, Anton J. Enright, Dave Willey, Tim Hubbard, Rebekah Hall, Michael Kay, Matthew D. Clark, Matthew Jones, Glenn Harden, C. D. Skuce, Lauren Robertson, Leonard I. Zon, Lucy Matthews, Jeffrey C. Barrett, Michael A. Quail, Emma J. Kenyon, Leonor T. Quintais, Benjamin Phillimore, S Hammond, Carl Henderson, Joanna Harley, Elliot Harrison, Cordelia Langford, Christopher M. Dooley, and Sean Maguire

Subjects
Max planck institute, Comparative genomics, Multidisciplinary, Reference genome sequence, biology, Evolutionary biology, Philosophy, Human genome, Bioinformatics, biology.organism_classification, Zebrafish
Abstract

Nature 496, 498–503 (2013); doi:10.1038/nature12111 In this Letter, five authors were inadvertently omitted: Sharmin Begum and Christine Lloyd from the Wellcome Trust Sanger Institute, and Christa Lanz, Gunter Raddatz and Stephan C. Schuster from the Max Planck Institute for Developmental Biology. David Elliot was incorrectly listed as David Eliot, Beverley Mortimore was incorrectly listed as Beverly Mortimer, and James D.

Published
2013

8. Erratum: Corrigendum: Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus

Author

Audrey Fraser, Angela Lord, Hiroyuki Horiuchi, Arnab Pain, Hubertus Haas, Michel Monod, Juan C. Sánchez-Ferrero, S. Squares, Dan Chen, Joan W. Bennett, Michael A. Quail, Bethan L. Pritchard, Hoda Khouri, David W. Denning, Stephanie Mulligan, Marie Adele Rajandream, R. Gwilliam, María Molina, Brian J. Haas, David S. Saunders, Jean-Paul Latgé, Charles Lu, Katsuya Gomi, Susan O'Neil, David B. Archer, H. Stanley Kim, William C. Nierman, Natalie D. Fedorova, Tamara Feldblyum, Sven Konzack, Rob Squares, Claire Price, Ariette Goble, Michio Takeuchi, Matthew Berriman, Sam Griffith-Jones, Nancy P. Keller, David A. Harris, Lee Murphy, Bruce L. Miller, Kathy Seeger, Mark L. Farman, James E. Galagan, Bart Barrell, Clara Bermejo, John Woodward, Neil Rawlins, María Josefa Marcos García, Reinhard Fischer, Ian T. Paulsen, Sean Humphray, Steven L. Salzberg, Simon Rutter, Matthew J. Collins, Javier Arroyo, William H. Majoros, Gregory S. May, Robert L. Davies, Richard Coulsen, Michael J. Anderson, Weixi Li, Catherine M. Ronning, Resham Kulkarni, Katsuhiko Kitamoto, Owen White, Kiyoshi Asai, Geoffrey Turner, Yasmin Ali Mohamoud, Jae-Hyuk Yu, Ester Rabbinowitsch, Hubert Renauld, Anne Lafon, Mihaela Pertea, Nigel Fosker, Neil Hall, Miguel A. Peñalva, Paul S. Dyer, Gustavo H. Goldman, Isabelle Mouyna, Jiaqi Huang, Jennifer R. Wortman, Claire M. Fraser, Paul Bowyer, Masayuki Machida, Keietsu Abe, José Luis García, Santiago Rodríguez de Córdoba, Janice Weidman, Javier Jiménez, Utz Reichard, Toshitaka Kumagai, José Manuel Rodríguez-Peña, Tetsuo Kobayashi, Miguel del Nogal Sánchez, Carlos R. Vázquez de Aldana, Nadia Fedorova, Fredj Tekaia, and Geoffrey D. Robson

Subjects
Multidisciplinary, biology, biology.organism_classification, Filamentous fungus, Aspergillus fumigatus, Sequence (medicine), Microbiology
Abstract

Nature 438, 1151–1156 (2005) There are two errors in the author listings for this Letter: the surname of Anne Lafon was misspelt as 'Lafton' and the affiliation of Hiroyuki Horiuchi should have been number 16 (and not 15, as was published).

Published
2006

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