387 results on '"Nielsen NC"'
Search Results
2. Allergitestning
- Author
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Østergaard, Marianne Stubbe, Andersen, John Sahl, Gorlen, Thomas, Hebøll-Nielsen, NC, Nielsen, Lill Moll, Østergaard, Marianne Stubbe, Andersen, John Sahl, Gorlen, Thomas, Hebøll-Nielsen, NC, and Nielsen, Lill Moll
- Published
- 2004
3. NMR-based metabonomic studies reveal changes in the biochemical profile of plasma and urine from pigs fed high-fibre rye bread.
- Author
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Bertram HC, Bach Knudsen KE, Serena A, Malmendal A, Nielsen NC, Fretté XC, and Andersen HJ
- Published
- 2006
- Full Text
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4. Contraception with long acting subdermal implants: I. An effective and acceptable modality in international clinical trials
- Author
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Jorgen Wiese, Ana Rita da Silva, Mogens Osler, Irving Sivin, Francisco Alvarez Sanchez, Elsimar Metzker Coutinho, Horacio B. Croxatto, Anrudh K. Jain, Nielsen Nc, Lincoln Hew, Janet Stern, Sheldon J. Segal, L.L. Williams, Pentti Holma, C.E.R. Mattos, Anibal Faundes, Dale N. Robertson, Soledad Diaz, Olivia McDonald, and Harold A. Nash
- Subjects
Gynecology ,medicine.medical_specialty ,Pregnancy ,medicine.drug_class ,Obstetrics ,business.industry ,Obstetrics and Gynecology ,medicine.disease ,Pregnancy rate ,Regimen ,chemistry.chemical_compound ,Reproductive Medicine ,chemistry ,Megestrol ,Norgestrel ,medicine ,Levonorgestrel ,business ,Progestin ,Norgestrienone ,medicine.drug - Abstract
This paper presents results of a double blind, multi-centered and multi-national study of two progestin only subdermal implants used for contraception. A regimen of six capsules of levonorgestrel (Ng) used by 492 women had a net cumulative 12-month pregnancy rate of 0.6 percent and a continuation rate of 74.6 percent. 498 women used six capsules of norgestrienone (R2010) and experienced a net cumulative 12-month pregnancy rate of 3.5 percent and a continuation rate of 79.4 percent. The difference in the pregnancy rate was significant at P less than 0.01, while there was no significant difference in the continuation rates. Menstrual problems were the principal reason for termination of the levonorgestrel regimen, accounting for approximately half of all terminations. There were significantly fewer menstrual problems among users of the norgestrienone (R2010) capsules; the net cumulative 12-month termination rate for this reason was 4.3 percent. Results are compared with continuation and termination rates for acceptors of the Copper T 200 at the same clinics. The low pregnancy rate and reasonably high continuation rate of the norgestrel implants coupled with the fact that the expected effective lifetime of a set of capsules is of the order of 3-5 years appears to warrant further development of this contraceptive regimen.
- Published
- 1978
- Full Text
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5. Nova-T und Kupfer T im Fünfjahresvergleich
- Author
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Hannu Allonen, Nielsen Nc, Nygren Kg, T. Pyörälä, and T. Luukainen
- Subjects
medicine.medical_specialty ,Small diameter ,Obstetrics ,Contraceptive Devices ,business.industry ,media_common.quotation_subject ,Obstetrics and Gynecology ,Fertility ,Therapeutic abortion ,Pregnancy rate ,health services administration ,Maternity and Midwifery ,medicine ,Parity (mathematics) ,business ,geographic locations ,media_common - Abstract
A multi-centre randomized comparative study for five years was conducted on the efficacy of the Nova-T and the copper-T-200 intra-uterine contraceptive devices. A total of 1865 insertions during the last days of menstruation or a few days following menstruation or immediately following a therapeutic abortion (in 322 women) was performed. The cumulative total Pearl-Index during the five years of the study was 0.8 for the Nova-T and 2.0 for the copper-T-200. The pregnancy rate for the Nova-T was lower than for the copper-T-200 in each country, each age group and each parity group. The copper-T was expelled most frequently in the youngest age group and most rarely in the oldest age group. Evaluated by the expulsion rate, the retention of the Nova-T was not influenced by age and much less influenced by parity than the retention of the copper-T. Because of the small diameter of the insertion tube, there were no problems with the insertion of the Nova-T. The removal of the Nova-T was easy and uncomplicated. In our study, the fertility returned unencumbered irrespective of a wearing time of the device for more or less than two years. The results show, that the Nova-T is an excellent device for intra-uterine contraception.
- Published
- 1984
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6. Contraception with long acting subdermal implants: II. Measured and perceived effects in international clinical trials
- Author
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Francisco Alvarez Sanchez, Anibal Faundes, Lincoln Hew, C.E.R. Mattos, Olivia McDonald, Ana Rita da Silva, Sheldon J. Segal, Mogens Osier, L.L. Williams, Nielsen Nc, Irving Sivin, Elsimar Metzker Coutinho, Soledad Diaz, Anrudh K. Jain, Dale N. Robertson, Janet Stern, Pentti Holma, Jorgen Wiese, Harold A. Nash, and Horacio B. Croxatto
- Subjects
Gynecology ,medicine.medical_specialty ,Obstetrics ,business.industry ,Obstetrics and Gynecology ,Hemoglobin levels ,medicine.disease ,Clinical trial ,Blood pressure ,Long acting ,Reproductive Medicine ,medicine ,Levonorgestrel ,business ,Norgestrienone ,Acne ,Depression (differential diagnoses) ,medicine.drug - Abstract
Hemoglobin levels, blood pressure, body weight and the subjects' impressions of changes in various conditions have been recorded during a multicentered study of levonorgestrel and norgestrienone subdermal implants. Data from a group of women using the Copper T 200 IUD at the same clinics and admitted under the same criteria are presented for comparative purposes. A major reason for termination of use of the levonorgestrel implants was disturbance of menstrual patterns. When all subjects reported their experience with the two steroid regimens, substantially larger proportions of subjects using levonorgestrel implants noted changes in menstrual flow, duration of menses and intermenstrual bleeding and spotting than was the case of women contracepting with norgestrienone implants. Relative to the experience with implants, more users of the Copper T 200 in a control study reported increased dysmenorrhea, and an increase in the amount and duration of menstrual flow. Despite the reported increases in menstrual flow and duration of bleeding, women using subdermal implants of either contraceptive steroid, levonorgestrel and norgestrienone, showed an increase in blood hemoglobin values during the course of one year of use. In the control group using the TCu 200 IUD, no change in mean hemoglobin levels was found. Neither mean systolic nor diastolic blood pressure of the women using steroids was affected. There was a small net increase in weight among the users of steroids, but none in the Copper T controls. An increase in acne and other skin conditions was perceived by the same percentages of women using Copper IUDs as women using the steroids. A greater proportion of IUD acceptors noted increased nervousness and depression than was felt by the women contracepting with the steroid implants.
- Published
- 1978
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7. Intrauterine contraception with Nova-T and Copper-T-200 during three years
- Author
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Hannu Allonen, Nielsen Nc, Tapani Luukkainen, Tapani Pyörälä, and Nygren Kg
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Adult ,medicine.medical_specialty ,media_common.quotation_subject ,Population ,Fertility ,law.invention ,Randomized controlled trial ,Pregnancy ,law ,health services administration ,medicine ,Humans ,education ,media_common ,Gynecology ,Clinical Trials as Topic ,education.field_of_study ,Obstetrics ,business.industry ,Age Factors ,Intrauterine Devices, Medicated ,Obstetrics and Gynecology ,Intrauterine Devices, Copper ,medicine.disease ,Pregnancy rate ,Reproductive Medicine ,Family planning ,Female ,business ,Parity (mathematics) ,Developed country ,geographic locations ,Follow-Up Studies - Abstract
A randomized comparative trial on the clinical performance of two copper-releasing IUDs (Nova-T and Copper-T-200) was performed simultaneously in Denmark, Finland and Sweden. After three years the cumulative pregnancy rate was 1.9 for Nova-T and 5.0 for Copper-T. This difference in efficacy was statistically significant (p less than 0.001). Copper-T had a lower expulsion rate (p less than 0.05) in the total series but not in postmenstrual insertions. Differences between the two devices in other termination rates were not statistically significant. Analysis according to age and parity demonstrated that the pregnancy rate of Nova-T was lower than that of Copper-T in every age and parity group. The pregnancy rate of Nova-T was not effected by age or parity whereas the pregnancy rate and the expulsion rate of Copper-T decreased with increasing age and parity. The removal rate because of infection decreased markedly after the first year of use for both devices. The cumulative rate of removals for infection during the three years of use was not significantly correlated to age and there was no correlation to parity. The continuation rates increased with age and parity. The continuation rates of nulli- and primiparous women were almost identical with both devices and lower than continuation rates of women with 2 or three or more children. Only 11% of the women were lost to follow-up during 36 months. Nova-T had superior effectiveness in preventing undesired pregnancies when compared with Copper-T. The performance of Nova-T is less affected by age and parity then the performance of Copper-T. The silver core in copper wire gives a prolongation of the life-span for Nova-T. For these reasons, Nova-T appears to meet the requirements for an ideal IUD.
- Published
- 1981
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8. Combined and national experience of postmenstrual IUD insertions of Nova-T and Copper-T in a randomized study
- Author
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Tapani Luukkainen, Nielsen Nc, Hannu Allonen, Tapani Pyörälä, and Karl-Gösta Nygren
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Adult ,medicine.medical_specialty ,Adolescent ,media_common.quotation_subject ,Population ,Fertility ,Random Allocation ,03 medical and health sciences ,0302 clinical medicine ,Pregnancy ,health services administration ,Humans ,Medicine ,030212 general & internal medicine ,education ,Menstrual cycle ,media_common ,education.field_of_study ,030219 obstetrics & reproductive medicine ,business.industry ,Obstetrics ,Obstetrics and Gynecology ,Intrauterine Device Expulsion ,Intrauterine Devices, Copper ,medicine.disease ,3. Good health ,Parity ,Pregnancy rate ,Reproductive Medicine ,Family planning ,Female ,business ,Parity (mathematics) ,Developed country ,geographic locations ,Pelvic Inflammatory Disease - Abstract
A randomized comparative study between Nova-T and Copper-T-200 was performed simultaneously in Denmark, Finland and Sweden. The results of 741 postmenstrual insertions with Nova-T and 780 with Copper-T are reported. The pregnancy rate of Nova-T was lower in every age and parity group. The pregnancy rate of Copper-T-200 varied in participating countries, whereas the pregnancy rate of Nova-T was equally low in every country. The termination rate because of expulsion with Nova-T was less affected by age and parity than that of Copper-T. Significant differences in the continuation rates with the same device were found between countries. Removals because of infection showed that women below 25 years of age had a high risk for infection regardless of parity.
- Published
- 1979
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9. Sfectrophotometric Determination of Indocyanine Green in Plasma Especially with a View to an Improved Correction for Blank Density
- Author
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Nielsen Nc
- Subjects
Indocyanine Green ,Blood Chemical Analysis ,Chromatography ,medicine.diagnostic_test ,Heparin ,Chemistry ,Clinical Biochemistry ,Coloring agents ,General Medicine ,Plasma ,Blank ,chemistry.chemical_compound ,Spectrophotometry ,medicine ,Humans ,Coloring Agents ,Indocyanine green - Abstract
(1963). Sfectrophotometric Determination of Indocyanine Green in Plasma Especially with a View to an Improved Correction for Blank Density. Scandinavian Journal of Clinical and Laboratory Investigation: Vol. 15, No. 6, pp. 613-621.
- Published
- 1963
- Full Text
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10. Development of Photochemical Activity in Chloroplast Membranes. II. Studies With a Mutant of Barley Grown Under Different Environments
- Author
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Smillie, RM, Nielsen, NC, Henningsen, KW, and Wettstein, DV
- Abstract
Chloroplast development in the barley mutant xantha-b12, a nuclear gene mutant derived from Hordeum vulgare L. cv. Svalfs Bonus, was profoundly influenced by the temperature and light intensity to which the plants were subjected during growth. Low temperatures and high light intensities retarded chloroplast development. By growing this mutant under different combinations of temperature and light intensity, seedlings were produced containing chloroplasts at different developmental stages. Measurements of photochemical activities of the isolated chloroplasts indicated a sequence for development of photochemical competence in chloroplast membranes very similar to that adduced from a study of several different barley mutants grown under a single environment. A photoreductive capacity is initially acquired but energy conservation sites only become fully functional at an advanced stage of membrane development.
- Published
- 1977
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11. Development of Photochemical Activity in Chloroplast Membranes. I. Studies With Mutants of Barley Grown Under a Single Environment
- Author
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Smillie, RM, Nielsen, NC, Kenningsen, KW, and Wettstein, DV
- Abstract
The development of photochemical competence in chloroplast thylakoid membranes was studied using a series of nuclear gene mutants of barley. The chloroplasts of each mutant reached a different developmental stage when grown under a single set of environmental conditions. Photochemical capacity as well as morphological and compositional features were compared for chloroplasts in the primary leaves of eight mutants and wild-type barley (Hordeum vulgare cv. Svalfs Bonus) after growth of the plants for 7 days at 21°C and 1700 lux. The results obtained indicated a sequence for the progressive acquisition of photochemical capability by the chloroplast membranes. The least developed of the mutant chloroplasts photoreduced ferricyanide but not 2,6-dichloroindophenol (DCIP). Immature chloroplast membrane systems from other slightly more developed mutants showed a low activity for DCIP photoreduction which was stimulated by diphenylcarbazide. In these mutants, however, the rate of photoreduction of ferricyanide was not stimulated by the uncoupler methylamine, proton pump activity was not detected and photosystem I activity was low. In the more developed of the mutant thylakoid systems, photoreductive activity was stimulated by methylamine and a proton gradient was generated in the light. The more developed the system, the greater was the stimulation obtained with methylamine. Other changes which were correlated with lamellar membrane development included a decrease in the light intensity required to saturate ferricyanide and DCIP photoreductive activities and an increase in the degree of inhibition of the photoreduction of ferricyanide by the photosystem II inhibitor 3-(3,4-dichlorophenyl)-1,1-dimethylurea (DCMU). The activity changes were not correlated with either the amount of grana present or the ratio of chlorophyll a to b. Mutants showing low rates of DCMU-sensitive photoreduction of ferricyanide and DCIP were aberrant in protein composition of the chloroplast membranes.
- Published
- 1977
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12. Correction for Blank Density in Spectrophotometric Dye Determination in Turbid Plasma Within the Spectral Range 600 To 920 Nanometers: (A Method of Universal Applicability Derived from Gaebler's Law on the Basis of Simple Theoretical Considerations)
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Nielsen Nc
- Subjects
Blood Chemical Analysis ,Range (particle radiation) ,Basis (linear algebra) ,medicine.diagnostic_test ,Chemistry ,Clinical Biochemistry ,Analytical chemistry ,General Medicine ,Plasma ,Blank ,Computational physics ,Spectrophotometry ,Simple (abstract algebra) ,medicine ,Humans ,Nanometre ,Coloring Agents - Published
- 1963
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13. Two-year rates for Nova T and Copper T in a comparative study
- Author
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Nielsen Nc, Karl-Gösta Nygren, Tapani Pyörälä, Hannu Allonen, and Tapani Luukkainen
- Subjects
Adult ,medicine.medical_specialty ,Population ,chemistry.chemical_element ,Use effectiveness ,03 medical and health sciences ,0302 clinical medicine ,Double-Blind Method ,Actuarial Analysis ,Pregnancy ,health services administration ,medicine ,Humans ,030212 general & internal medicine ,Continuation rate ,education ,education.field_of_study ,Clinical Trials as Topic ,030219 obstetrics & reproductive medicine ,business.industry ,Obstetrics ,Follow up studies ,Obstetrics and Gynecology ,Intrauterine Device Expulsion ,medicine.disease ,Intrauterine Devices, Copper ,Copper ,Menstruation ,Pregnancy rate ,Reproductive Medicine ,chemistry ,Female ,business ,Parity (mathematics) ,geographic locations ,Follow-Up Studies - Abstract
A random assignment comparative study between Nova T and Copper T 200 after two years of use revealed that the Nova T resulted in a significantly lower pregnancy rate than the Copper T. The study was performed simultaneously in Denmark, Sweden and Finland. The pregnancy rate in Nova T users was lower than in Copper T users in every country and in every age and parity group. There was no clinic effect in the pregnancy rate of Nova T users. The other termination rates of these two devices were not significantly different. The first segment continuation rates at two years of postmenstrual insertions were 64.7 for Nova T and 65.5 for Copper T 200. It seems that Nova T is an improved copper-releasing IUD.A comparative study of 2 years duration is reported which compared various rates associated with the use of 2 copper IUDs, Nova T and Copper T devices. The clinical centers contributing to this report were located in Finland, Sweden, and Denmark. Data are reported by age, parity, and timing of insertion. 4 figures and 5 tables present the complete statistical results, but in general the study revealed a significantly lower pregnancy rate for the Nova T than the Copper T, which held true in every country and at every age and parity group. Terminations for bleeding/pain, or terminations which were spontaneous, did not differ between the 2 IUD types. Continuation rates at 2 years (the first segment of the study) of postmenstrual insertions were 64.7 and 65.5 for Nova T and Copper 5, respectively. A most important finding is the lack of clinic-specific differences in the pregnancy rate data; thus Nova T is thought to be an improved copper-containing IUD.
- Published
- 1980
14. Return of fertility after the removal of Nova T or copper T 200
- Author
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Hannu Allonen, T. Pyörälä, Nygren Kg, Tapani Luukkainen, and Nielsen Nc
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Adult ,medicine.medical_specialty ,Time Factors ,Adolescent ,Birth weight ,media_common.quotation_subject ,Population ,Fertility ,Pregnancy ,Medicine ,Humans ,education ,media_common ,Gynecology ,education.field_of_study ,business.industry ,Obstetrics and Gynecology ,medicine.disease ,Intrauterine Devices, Copper ,Pregnancy rate ,Clinical research ,Reproductive Medicine ,Family planning ,Female ,business ,Sex ratio ,Demography - Abstract
The return of fertility after removal of Nova T or Copper T 200 IUDs was studied in 150 women who had a removal for planning pregnancy in a study performed for the comparison of the clinical performance of these IUDs in Denmark, Finland and Sweden. There was no significant difference in the return of fertility of women having used either device. The cumulative probability of pregnancy per 100 women after the removal of the IUD, as a net rate, was 77.3 at one year, 88.9 at two years and 92.4 at three years. The return of fertility was analyzed separately for those women who had used their IUD for less than two years and for two or more years. The duration of the use had no significant effect on the return of fertility. The outcome of pregnancy, the birth weight, the condition at delivery and the sex ratio of the newborns were normal in the participating countries.
- Published
- 1982
15. Randomized comparison of clinical performance of two copper-releasing IUDs, Nova-T and Copper-T-200, in Denmark, Finland and Sweden
- Author
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Ahti Kosonen, Tapani Pyörälä, Tapani Luukkainen, Nielsen Nc, and Karl-Gösta Nygren
- Subjects
Adult ,medicine.medical_specialty ,law.invention ,03 medical and health sciences ,Random Allocation ,0302 clinical medicine ,Obstetrics and gynaecology ,Randomized controlled trial ,law ,Pregnancy ,health services administration ,medicine ,Humans ,030212 general & internal medicine ,Continuation rate ,Gynecology ,030219 obstetrics & reproductive medicine ,Obstetrics ,business.industry ,Clinical performance ,Obstetrics and Gynecology ,Intrauterine Device Expulsion ,Intrauterine Devices, Copper ,3. Good health ,Pregnancy rate ,Reproductive Medicine ,Family planning ,Female ,business ,Developed country ,geographic locations - Abstract
A randomized study was conducted simultaneously in three countries to compare the clinical performance of two new IUDs, the Nova-T and Copper-T-200. Forty-four persons, midwives, general practitioners, residents and specialists in obstetrics and gynecology inserted 907 Nova-Ts and 936 Copper-Ts. The pregnancy rate of Nova-T (0.7 at one year) was significantly lower than that of Copper-T (2.2 at one year). No significant differences were observed in other termination rates. The continuation rates were 72.6 for Nova-T and 71.3 for Copper-T-200. The total experience was based on 18,035 woman months of use, with a lost to follow-up of less than 7 per cent for both IUDs.
- Published
- 1979
16. Development of Photochemical Activity in Chloroplast Membranes. II. Studies With a Mutant of Barley Grown Under Different Environments
- Author
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Smillie, RM, primary, Nielsen, NC, additional, Henningsen, KW, additional, and Wettstein, DV, additional
- Published
- 1977
- Full Text
- View/download PDF
17. Transition metal transporting P-type ATPases: terminal metal-binding domains serve as sensors for autoinhibitory tails.
- Author
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Hu Q, Sitsel O, Bågenholm V, Grønberg C, Lyu P, Pii Svane AS, Andersen KR, Laursen NS, Meloni G, Nissen P, Juhl DW, Nielsen JT, Nielsen NC, and Gourdon P
- Abstract
Copper is an essential micronutrient and yet is highly toxic to cells at elevated concentrations. P
1B -ATPase proteins are critical for this regulation, providing active extrusion across cellular membranes. One unique molecular adaptation of P1B -ATPases compared to other P-type ATPases is the presence of metal-binding domains (MBDs) at the cytosolic termini, which however are poorly characterized with an elusive mechanistic role. Here we present the MBD architecture in metal-free and metal-bound forms of the archetype Cu+ -specific P1B -ATPase LpCopA, determined using NMR. The MBD is composed of a flexible tail and a structured core with a metal ion binding site defined by three sulfur atoms, one of which is pertinent to the so-called CXXC motif. Furthermore, we demonstrate that the MBD rather than being involved in ion delivery likely serves a regulatory role, which is dependent on the classical P-type ATPase E1-E2 transport mechanism. Specifically, the flexible tail appears responsible for autoinhibition while the metal-binding core is used for copper sensing. This model is validated by a conformation-sensitive and MBD-targeting nanobody that can structurally and functionally replace the flexible tail. We propose that autoinhibition of Cu+ -ATPases occurs at low copper conditions via MBD-mediated interference with the soluble domains of the ATPase core and that metal transport is enabled when copper levels rise, through metal-induced dissociation of the MBD. This allows P1B -ATPase 'vacuum cleaners' to tune their own activity, balancing the levels of critical micronutrients in the cells., (© 2024 The Author(s). The FEBS Journal published by John Wiley & Sons Ltd on behalf of Federation of European Biochemical Societies.)- Published
- 2024
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18. Dynamic nuclear polarization pulse sequence engineering using single-spin vector effective Hamiltonians.
- Author
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Nielsen AB, Carvalho JPA, Goodwin DL, Wili N, and Nielsen NC
- Abstract
Dynamic nuclear polarization (DNP) has proven to be a powerful technique to enhance nuclear spin polarization by transferring the much higher electron spin polarization to nuclear spins prior to detection. While major attention has been devoted to high-field applications with continuous microwave irradiation, the introduction of fast arbitrary waveform generators is gradually increasing opportunities for the realization of pulsed DNP. Here, we describe how static-powder DNP pulse sequences may systematically be designed using single-spin vector effective Hamiltonian theory. Particular attention is devoted to the intricate interplay between two important parts of the effective first-order Hamiltonian, namely, linear field (single-spin) terms and Fourier coefficients determining scaling of the bilinear coupling terms mediating polarization transfer. We address two cases. The first case operates in the regime, where the microwave field amplitude is lower than the nuclear Larmor frequency. Here, we illustrate the predictive strength of a single-spin vector model by comparing analytical calculations with experimental DNP results at 9.8 GHz/15 MHz on trityl radicals at 80 K. The second case operates in the high-power regime, where we combine the underlying single-spin vector design principles with numerical non-linear optimization to optimize the balance between the linear terms and the bilinear Fourier coefficients in a figure of merit function. We demonstrate, numerically and experimentally, a broadband DNP pulse sequence PLATO (PoLarizAtion Transfer via non-linear Optimization) with a bandwidth of 80 MHz and optimized for a microwave field with a maximum (peak) amplitude of 32 MHz.
- Published
- 2024
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19. Soil Analysis by Mobile Multinuclear NMR: Quantification of Phosphorus, Aluminum, and Sodium.
- Author
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Sørensen MK, Lemming C, Jensen ON, and Nielsen NC
- Abstract
Soil analyses are essential to ensure economically and environmentally sustainable crop production while maintaining the soil fertile for future use. Unfortunately, common soil analyses may be highly demanding in terms of time, chemicals, and costs. This applies, in particular, when total quantities of elements are desired. As an easy and fast alternative without consumption of chemicals, we here present mobile
31 P,27 Al,23 Na, and1 H NMR for quantification of phosphorus, aluminum, and sodium contents in soil. This enables accurate on-site analysis and is suitable for direct measurement on fresh, undried soil samples since the water content is quantified as well. For demonstration, 40 various Danish agricultural soil samples were analyzed using a mobile NMR sensor, and the results were compared with external laboratory analyses for P, Al, and Na. The laboratory analyses were conducted with ICP-OES after four-acid digestion, which additionally were compared with aqua regia digestion, showing inadequacies in the performance of the latter. Good agreement between NMR and laboratory analyses (correlation coefficients 0.91 for P, 0.98 for Al, and 0.90 for Na, in the concentration ranges 250-1200 ppm P, 1.4-5% Al, and 0.3-1% Na) were obtained with high accuracy using NMR measuring times of 20 min to 1 h for P, 4-12 min for Al, and 6-20 min for Na. Additionally, the NMR measurements provide information on the amount of P associated with paramagnetic centers (e.g., Fe3+ ). Good correlations were also observed to other parameters such as the clay content, which is predictable from the intensity of the more fast-relaxing of three27 Al NMR components.- Published
- 2024
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20. Observation of dynamic nuclear polarization echoes.
- Author
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Wili N, Nielsen AB, Carvalho JP, and Nielsen NC
- Abstract
It is demonstrated that the time evolution of the electron-nuclear polarization transfer process during pulsed dynamic nuclear polarization (DNP) can be reversed on a microsecond timescale, leading to the observation of DNP echoes. The DNP echoes are induced by consecutive application of two pulse trains that produce effective Hamiltonians that differ only in the sign of the effective hyperfine coupling. The experiments have been performed on a frozen solution of trityl radicals in water/glycerol on a homebuilt X-band electron paramagnetic resonance/DNP spectrometer at 80 kelvins. We envisage that DNP echoes will play an important role in future development of pulsed DNP for sensitivity-enhanced nuclear magnetic resonance, hyperfine spectroscopy, and quantum sensing.
- Published
- 2024
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21. Poly(Sitosterol)-Based Hydrophobic Blocks in Amphiphilic Block Copolymers for the Assembly of Hybrid Vesicles.
- Author
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Brodszkij E, Ryberg C, Lyons JA, Juhl DW, Nielsen NC, Sigalas NI, Lyulin AV, Pedersen JS, and Städler B
- Subjects
- Fluorescence Resonance Energy Transfer, Sitosterols chemistry, Hydrophobic and Hydrophilic Interactions, Polymers chemistry
- Abstract
Amphiphilic block copolymer and lipids can be assembled into hybrid vesicles (HVs), which are an alternative to liposomes and polymersomes. Block copolymers that have either poly(sitostryl methacrylate) or statistical copolymers of sitosteryl methacrylate and butyl methacrylate as the hydrophobic part and a poly(carboxyethyl acrylate) hydrophilic segment are synthesized and characterized. These block copolymers assemble into small HVs with soybean L-α-phosphatidylcholine (soyPC), confirmed by electron microscopy and small-angle X-ray scattering. The membrane's hybrid nature is illustrated by fluorescence resonance energy transfer between labeled building blocks. The membrane packing, derived from spectra when using Laurdan as an environmentally sensitive fluorescent probe, is comparable between small HVs and the corresponding liposomes with molecular sitosterol, although the former show indications of transmembrane asymmetry. Giant HVs with homogenous distribution of the block copolymers and soyPC in their membranes are assembled using the electroformation method. The lateral diffusion of both building blocks is slowed down in giant HVs with higher block copolymer content, but their permeability toward (6)-carboxy-X-rhodamine is higher compared to giant vesicles made of soyPC and molecular sitosterol. This fundamental effort contributes to the rapidly expanding understanding of the integration of natural membrane constituents with designed synthetic compounds to form hybrid membranes., (© 2024 The Author(s). Small published by Wiley‐VCH GmbH.)
- Published
- 2024
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22. Water Promotes Melting of a Metal-Organic Framework.
- Author
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Sørensen SS, Christensen AKR, Bouros-Bandrabur EA, Andersen ES, Christiansen HF, Lang S, Cao F, Jalaludeen MFU, Christensen JFS, Winters WMW, Andersen BP, Nielsen AB, Nielsen NC, Ravnsbæk DB, Kristensen PK, Yue Y, and Smedskjaer MM
- Abstract
Water is one of the most reactive and abundant molecules on Earth, and it is thus crucial to understand its reactivity with various material families. One of the big unknown questions is how water in liquid and vapor forms impact the fast-emerging class of metal-organic frameworks (MOFs). Here, we discover that high-pressure water vapor drastically modifies the structure and hence the dynamic, thermodynamic, and mechanical properties of MOF glasses. In detail, we find that an archetypical MOF (ZIF-62) is extremely sensitive to heat treatments performed at 460 °C and water vapor pressures up to ∼110 bar. Both the melting and glass transition temperatures decrease remarkably (by >100 °C), and simultaneously, hardness and Young's modulus increase by up to 100% under very mild treatment conditions (<20 bar of hydrothermal pressure). Structural analyses suggest water to partially coordinate to Zn in the form of a hydroxide ion by replacing a bridging imidazolate-based linker. The work provides insight into the role of hot-compressed water in influencing the structure and properties of MOF glasses and opens a new route for systematically changing the thermodynamics and kinetics of MOF liquids and thus altering the thermal and mechanical properties of the resulting MOF glasses., Competing Interests: The authors declare no competing financial interest., (© 2024 The Authors. Published by American Chemical Society.)
- Published
- 2024
- Full Text
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23. Designing broadband pulsed dynamic nuclear polarization sequences in static solids.
- Author
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Wili N, Nielsen AB, Völker LA, Schreder L, Nielsen NC, Jeschke G, and Tan KO
- Abstract
Dynamic nuclear polarization (DNP) is a nuclear magnetic resonance (NMR) hyperpolarization technique that mediates polarization transfer from unpaired electrons with large thermal polarization to NMR-active nuclei via microwave (mw) irradiation. The ability to generate arbitrarily shaped mw pulses using arbitrary waveform generators allows for remarkable improvement of the robustness and versatility of DNP. We present here novel design principles based on single-spin vector effective Hamiltonian theory to develop new broadband DNP pulse sequences, namely, an adiabatic version of XiX (X-inverse X)-DNP and a broadband excitation by amplitude modulation (BEAM)-DNP experiment. We demonstrate that the adiabatic BEAM-DNP pulse sequence may achieve a
1 H enhancement factor of ∼360, which is better than ramped-amplitude NOVEL (nuclear spin orientation via electron spin locking) at ∼0.35 T and 80 K in static solids doped with trityl radicals. In addition, the bandwidth of the BEAM-DNP experiments (~50 MHz) is about three times the1 H Larmor frequency. The generality of our theoretical approach will be helpful in the development of new pulsed DNP sequences.- Published
- 2022
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24. On-Site Measurement of Fat and Protein Contents in Milk Using Mobile NMR Technology.
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Sørensen MK, Balsgart NM, Beyer M, Jensen ON, and Nielsen NC
- Subjects
- Animals, Cattle, Female, Goats, Sheep, Fats analysis, Magnetic Resonance Spectroscopy methods, Milk chemistry, Milk Proteins analysis
- Abstract
Robust and easy-to-use NMR sensor technology is proposed for accurate, on-site determination of fat and protein contents in milk. The two parameters are determined using fast consecutive
1 H and35 Cl low-field NMR experiments on milk samples upon the 1:1 addition of a low-cost contrast solution. Reliable and accurate measurements are obtained without tedious calibrations and the need for extensive database information and may readily be conducted by non-experts in production site environments. This enables on-site application at farms or dairies, or use in laboratories harvesting significant reductions in costs and time per analysis as compared to wet-chemistry analysis. The performance is demonstrated for calibration samples, various supermarket milk products, and raw milk samples, of which some were analyzed directly in the milking room. To illustrate the wide application range, the supermarket milk products included both conventionally/organically produced, lactose-free milk, cow's, sheep's and goat's milk, homogenized and unhomogenized milk, and a broad nutrient range (0.1-9% fat, 1-6% protein). Excellent agreement between NMR measurements and reference values, without corrections or changes in calibration for various products and during extensive periods of experiment conduction (4 months) demonstrates the robustness of the procedure and instrumentation. For the raw milk samples, correlations between NMR and IR, NMR and wet-chemistry, as well as IR and wet-chemistry results, show that NMR, in terms of accuracy, compares favorably with the other methods.- Published
- 2022
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25. Fast and Accurate Quantification of Nitrogen and Phosphorus Constituents in Animal Slurries Using NMR Sensor Technology.
- Author
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Jensen ON, Beyer M, Sørensen MK, Kreimeyer M, and Nielsen NC
- Abstract
The optimal processing of animal slurry with a minimal environmental impact either as an organic fertilizer or as an energy source for biogas production fundamentally requires accurate, fast, cost-effective, and mobile analytical techniques for the measurement of nitrogen and phosphorus in large volumes of liquid animal slurry. Based on more than 300 different slurries from different species and origins, we provide here an extensive analysis of low-field NMR and standard laboratory measurements for animal slurry analysis. It is found that low-field NMR provides higher precision than wet chemistry laboratory measurements for ammonium nitrogen and total nitrogen, while it provides slightly lower precision for total phosphorus measurements. Low-field NMR may, through a square-root dependency between time and precision, be adapted for analysis at farms, in slurry tankers/transporters, in biogas digesters, or in laboratories., Competing Interests: The authors declare the following competing financial interest(s): Filled a patent in the area. The authors O.J., M.B., M.K.S., and N.C.N. are affiliated with NanoNord A/S selling the TVESKAEG NMR sensor for industrial and scientific applications., (© 2021 The Authors. Published by American Chemical Society.)
- Published
- 2021
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26. Imaging Rheumatoid Arthritis in Mice Using Combined Near Infrared and 19 F Magnetic Resonance Modalities.
- Author
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Vu-Quang H, Vinding MS, Jakobsen M, Song P, Dagnaes-Hansen F, Nielsen NC, and Kjems J
- Subjects
- Animals, Disease Models, Animal, Folic Acid chemistry, Mice, Nanoparticles chemistry, RAW 264.7 Cells, Arthritis, Rheumatoid diagnostic imaging, Fluorine-19 Magnetic Resonance Imaging, Spectroscopy, Near-Infrared
- Abstract
Rheumatoid arthritis (RA) is an autoimmune disease that causes pain and tissue destruction in people worldwide. An accurate diagnosis is paramount in order to develop an effective treatment plan. This study demonstrates that combining near infrared (NIR) imaging and
19 F MRI with the injection of labelled nanoparticles provides high diagnostic specificity for RA. The nanoparticles were made from poly(ethylene glycol)-block-poly(lactic-co-glycolic acid) (NP) or PLGA-PEG-Folate (Folate-NP), loaded with perfluorooctyl bromide (PFOB) and indocyanine green (ICG) and evaluated in vitro and in a collagen-induced arthritic (CIA) mouse model. The different particles had a similar size and a spherical shape according to dynamic light scattering (DLS) and transmission electron microscopy (TEM). Based on flow cytometry and19 F MRI analysis, Folate-NP yielded a higher uptake than NP in activated macrophages in vitro. The potential RA-targeting ability of the particles was studied in CIA mice using NIR and19 F MRI analysis. Both NP and Folate-NP accumulated in the RA tissues, where they were visible in NIR and19 F MRI for up to 24 hours. The presence of folate as a targeting ligand significantly improved the NIR signal from inflamed tissue at the early time point (2 hours), but not at later time points. Overall, these results suggest that our nanoparticles can be applied for combined NIR and19 F MRI imaging for improved RA diagnosis.- Published
- 2019
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27. Pluronic F127-Folate Coated Super Paramagenic Iron Oxide Nanoparticles as Contrast Agent for Cancer Diagnosis in Magnetic Resonance Imaging.
- Author
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Vu-Quang H, Vinding MS, Nielsen T, Ullisch MG, Nielsen NC, Nguyen DT, and Kjems J
- Abstract
Contrast agents have been widely used in medicine to enhance contrast in magnetic resonance imaging (MRI). Among them, super paramagnetic iron oxide nanoparticles (SPION) have been reported to have low risk in clinical use. In our study, F127-Folate coated SPION was fabricated in order to efficiently target tumors and provide imaging contrast in MRI. SPION alone have an average core size of 15 nm. After stabilizing with Pluronic F127, the nanoparticles reached a hydrodynamic size of 180 nm and dispersed well in various kinds of media. The F127-Folate coated SPION were shown to specifically target folate receptor expressing cancer cells by flow cytometry analysis, confocal laser scanning microscope, as well as in vitro MRI. Furthermore, in vivo MRI images have shown the enhanced negative contrast from the F127-Folate coated SPION in tumor-bearing mice. In conclusion, our F127-Folate coated SPION have shown great potential as a contrast agent in MRI, as well as in the combination with drug delivery for cancer therapy.
- Published
- 2019
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28. A unified heteronuclear decoupling picture in solid-state NMR under low radio-frequency amplitude and fast magic-angle-spinning frequency regime.
- Author
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Sharma K, Equbal A, Nielsen NC, and Madhu PK
- Abstract
Heteronuclear spin decoupling is a highly important component of solid-state NMR experiments to remove undesired coupling interactions between unlike spins for spectral resolution. Recently, experiments using a unification strategy of standard decoupling schemes were presented for high radio-frequency (RF) amplitudes and slow-intermediate magic-angle-spinning (MAS) frequencies, in the pursuit of deeper understanding of spin decoupling under phase-modulated RF irradiation [A. Equbal et al., J. Chem. Phys. 142, 184201 (2015)]. The approach, unified two-pulse heteronuclear decoupling (UTPD), incorporates the simultaneous time- and phase-modulation strategies, commonly used in solid-state NMR. Here, the UTPD based decoupling scheme is extended to the experimentally increasingly important regime of low RF amplitudes and fast MAS frequencies. The unified decoupling approach becomes increasingly effective in identifying the deleterious dipole-dipole and, in particular, J recoupling conditions which become critical for the low-amplitude RF regime. This is because J coupling is isotropic and therefore not averaged out by sample spinning unlike the anisotropic dipole-dipole coupling. Numerical simulations and analytic theory are used to understand the effects of various nuclear spin interactions on the decoupling performance of UTPD, in particular, the crucial difference between the low-phase and high-phase UTPD conditions with respect to J coupling. In the UTPD scheme, when the cycle-frequency of the pulse-sequence is comparable to the RF nutation frequency, the existence of a non-zero effective rotation in the basic two-pulse scheme becomes an essential feature for the efficient and robust averaging out of the scalar J coupling. This broad viewpoint is expected to bring different optimum low-power decoupling pulse schemes under a common footing.
- Published
- 2019
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29. Conservation of the Amyloid Interactome Across Diverse Fibrillar Structures.
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Juhl DW, Risør MW, Scavenius C, Rasmussen CB, Otzen D, Nielsen NC, and Enghild JJ
- Subjects
- Amino Acid Sequence, Amyloid genetics, Amyloid ultrastructure, Cerebrospinal Fluid metabolism, Humans, Ligands, Plasma metabolism, Protein Aggregation, Pathological genetics, Protein Aggregation, Pathological metabolism, Protein Binding, Protein Conformation, Amyloid metabolism
- Abstract
Several human proteins cause disease by misfolding and aggregating into amyloid fibril deposits affecting the surrounding tissues. Multiple other proteins co-associate with the diseased deposits but little is known about how this association is influenced by the nature of the amyloid aggregate and the properties of the amyloid-forming protein. In this study, we investigated the co-aggregation of plasma and cerebrospinal proteins in the presence of pre-formed amyloid fibrils. We evaluated the fibril-associated proteome across multiple amyloid fibril types that differ in their amino acid sequences, ultrastructural morphologies, and recognition by amyloid-binding dyes. The fibril types included aggregates formed by Amyloid β, α-synuclein, and FAS4 that are associated with pathological disorders, and aggregates formed by the glucagon and C-36 peptides, currently not linked to any human disease. Our results highlighted a highly similar response to the amyloid fold within the body fluid of interest. Fibrils with diverse primary sequences and ultrastructural morphologies only differed slightly in the composition of the co-aggregated proteins but were clearly distinct from less fibrillar and amorphous aggregates. The type of body fluid greatly affected the resulting amyloid interactome, underlining the role of the in vivo environment. We conclude that protein fibrils lead to a specific response in protein co-aggregation and discuss the effects hereof in the context of amyloid deposition.
- Published
- 2019
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30. Cryogen-free dissolution dynamic nuclear polarization polarizer operating at 3.35 T, 6.70 T, and 10.1 T.
- Author
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Ardenkjaer-Larsen JH, Bowen S, Petersen JR, Rybalko O, Vinding MS, Ullisch M, and Nielsen NC
- Subjects
- Algorithms, Carbon-13 Magnetic Resonance Spectroscopy methods, Equipment Design, Helium, Hot Temperature, Magnetics, Pattern Recognition, Automated, Pyruvic Acid chemistry, Software, Temperature, Time Factors, Carbon-13 Magnetic Resonance Spectroscopy instrumentation, Magnetic Fields, Magnetic Resonance Spectroscopy instrumentation, Magnetic Resonance Spectroscopy methods
- Abstract
Purpose: A novel dissolution dynamic nuclear polarization (dDNP) polarizer platform is presented. The polarizer meets a number of key requirements for in vitro, preclinical, and clinical applications., Method: It uses no liquid cryogens, operates in continuous mode, accommodates a wide range of sample sizes up to and including those required for human studies, and is fully automated., Results: It offers a wide operational window both in terms of magnetic field, up to 10.1 T, and temperature, from room temperature down to 1.3 K. The polarizer delivers a
13 C liquid state polarization for [1-13 C]pyruvate of 70%. The build-up time constant in the solid state is approximately 1200 s (20 minutes), allowing a sample throughput of at least one sample per hour including sample loading and dissolution., Conclusion: We confirm the previously reported strong field dependence in the range 3.35 to 6.7 T, but see no further increase in polarization when increasing the magnetic field strength to 10.1 T for [1-13 C]pyruvate and trityl. Using a custom dry magnet, cold head and recondensing, closed-cycle cooling system, combined with a modular DNP probe, and automation and fluid handling systems, we have designed a unique dDNP system with unrivalled flexibility and performance., (© 2018 International Society for Magnetic Resonance in Medicine.)- Published
- 2019
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- View/download PDF
31. Fast Wide-Line Solid-State NMR on a Low-Cost Benchtop Spectrometer.
- Author
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Sørensen MK, Balsgart NM, Jensen O, Nielsen NC, and Vosegaard T
- Abstract
Solid-state NMR may provide access to a wealth of information on molecular structure and dynamics. However, for many applications, the acquisition is challenged by broad resonances implying large spectral linewidths and low sensitivity. Conventionally, this is tackled by using costly and laboratory-fixed spectrometers based on large high-field superconducting magnets. In this Communication, we demonstrate that a range of challenging wide-line solid-state NMR spectra can be acquired on a robust, maintenance-free, low-cost benchtop/mobile NMR spectrometer with a sensitivity comparable to common high-field instruments. The performance and versatility for recording sensitive wide-line spectra is demonstrated through acquisition of
31 P NMR of paramagnetic FePO4 and full quadupolar lineshapes of Al2 O3 (27 Al) and KNO3 (14 N). Also, we introduce interleaved acquisition of frequency-stepped slices providing a dramatic reduction of the required experiment time., (© 2018 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.)- Published
- 2018
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32. Theranostic poly(lactic-co-glycolic acid) nanoparticle for magnetic resonance/infrared fluorescence bimodal imaging and efficient siRNA delivery to macrophages and its evaluation in a kidney injury model.
- Author
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Yang C, Vu-Quang H, Husum DMU, Tingskov SJ, Vinding MS, Nielsen T, Song P, Nielsen NC, Nørregaard R, and Kjems J
- Subjects
- Animals, Cyclooxygenase 2 genetics, Macrophages metabolism, Magnetic Resonance Imaging methods, Male, Mice, Nanoparticles ultrastructure, Optical Imaging methods, Polylactic Acid-Polyglycolic Acid Copolymer, RAW 264.7 Cells, RNA, Small Interfering genetics, RNA, Small Interfering therapeutic use, RNAi Therapeutics methods, Renal Insufficiency genetics, Theranostic Nanomedicine methods, Transfection methods, Drug Carriers chemistry, Lactic Acid chemistry, Nanoparticles chemistry, Polyglycolic Acid chemistry, RNA, Small Interfering administration & dosage, Renal Insufficiency therapy
- Abstract
In this work, a theranostic nanoparticle was developed for multimodal imaging and siRNA delivery. The core of the nanoparticles (NP) was formed by encapsulation of superparamagnetic iron oxides and indocyanine green in a PLGA matrix to serve as a multimodal probe for near-infrared (NIFR) and magnetic resonance (MR) imaging. The surface of the particle was coated with polyethylenimine (PEI) for siRNA delivery. Macrophages efficiently took up the nanoparticles and emitted strong NIFR and MR contrast. When transfected with siRNA targeting the pro-inflammatory enzyme cyclooxygenase-2 (COX-2), significant down-regulation of COX-2 was achieved in activated macrophages. Furthermore, after injection into a unilateral ureteral obstruction (UUO)-induced kidney injury model, NIFR and MRI imaging revealed accumulation of nanoparticles in the injury kidney. In addition, in vivo silencing of COX-2 was achieved by NP/PEI/siCOX-2, which further attenuated kidney injury. Our theranostic platform represents a promising approach for simultaneous diagnosis and treatment of inflammatory diseases., (Copyright © 2017 Elsevier Inc. All rights reserved.)
- Published
- 2017
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33. Critical Influence of Cosolutes and Surfaces on the Assembly of Serpin-Derived Amyloid Fibrils.
- Author
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Risør MW, Juhl DW, Bjerring M, Mathiesen J, Enghild JJ, Nielsen NC, and Otzen DE
- Subjects
- Amino Acid Sequence, Animals, Catalysis, Cattle, Heparin pharmacology, Hydrophobic and Hydrophilic Interactions, Kinetics, Polystyrenes chemistry, Protein Structure, Secondary, Solutions, Surface Properties, Amyloid chemistry, Protein Multimerization drug effects, Serpins chemistry
- Abstract
Many proteins and peptides self-associate into highly ordered and structurally similar amyloid cross-β aggregates. This fibrillation is critically dependent on properties of the protein and the surrounding environment that alter kinetic and thermodynamic equilibria. Here, we report on dominating surface and solution effects on the fibrillogenic behavior and amyloid assembly of the C-36 peptide, a circulating bioactive peptide from the α
1 -antitrypsin serine protease inhibitor. C-36 converts from an unstructured peptide to mature amyloid twisted-ribbon fibrils over a few hours when incubated on polystyrene plates under physiological conditions through a pathway dominated by surface-enhanced nucleation. In contrast, in plates with nonbinding surfaces, slow bulk nucleation takes precedence over surface catalysis and leads to fibrillar polymorphism. Fibrillation is strongly ion-sensitive, underlining the interplay between hydrophilic and hydrophobic forces in molecular self-assembly. The addition of exogenous surfaces in the form of silica glass beads and polyanionic heparin molecules potently seeds the amyloid conversion process. In particular, heparin acts as an interacting template that rapidly forces β-sheet aggregation of C-36 to distinct amyloid species within minutes and leads to a more homogeneous fibril population according to solid-state NMR analysis. Heparin's template effect highlights its role in amyloid seeding and homogeneous self-assembly, which applies both in vitro and in vivo, where glycosaminoglycans are strongly associated with amyloid deposits. Our study illustrates the versatile thermodynamic landscape of amyloid formation and highlights how different experimental conditions direct C-36 into distinct macromolecular structures., (Copyright © 2017 Biophysical Society. Published by Elsevier Inc. All rights reserved.)- Published
- 2017
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34. A general theoretical description of the influence of isotropic chemical shift in dipolar recoupling experiments for solid-state NMR.
- Author
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Shankar R, Ernst M, Madhu PK, Vosegaard T, Nielsen NC, and Nielsen AB
- Abstract
We present a general theoretical description that allows us to describe the influence of isotropic chemical shift in homonuclear and heteronuclear dipolar recoupling experiments in magic-angle-spinning solid-state NMR. Through a transformation of the Hamiltonian into an interaction frame with the combined radio-frequency irradiation and the isotropic chemical shift, we determine an effective Hamiltonian to first order with respect to the relevant internal nuclear spin interactions. This unravels the essential resonance conditions for efficient dipolar recoupling. Furthermore, we propose how to handle situations where the resonance conditions are not exactly fulfilled. To verify the general theoretical description, we compare numerical simulations using a time-sliced time-dependent Hamiltonian with simulations using the calculated effective Hamiltonian for propagation. The comparisons are exemplified for the homonuclear dipolar recoupling experiments C7
2 1 and POST-C72 1 .- Published
- 2017
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35. Publisher's Note: "Parameter independent low-power heteronuclear decoupling for fast magic-angle spinning solid-state NMR" [J. Chem. Phys. 146, 084202 (2017)].
- Author
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Equbal A, Madhu PK, Meier BH, Nielsen NC, Ernst M, and Agarwal V
- Published
- 2017
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36. Significance of symmetry in the nuclear spin Hamiltonian for efficient heteronuclear dipolar decoupling in solid-state NMR: A Floquet description of supercycled rCW schemes.
- Author
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Equbal A, Shankar R, Leskes M, Vega S, Nielsen NC, and Madhu PK
- Abstract
Symmetry plays an important role in the retention or annihilation of a desired interaction Hamiltonian in NMR experiments. Here, we explore the role of symmetry in the radio-frequency interaction frame Hamiltonian of the refocused-continuous-wave (rCW) pulse scheme that leads to efficient
1 H heteronuclear decoupling in solid-state NMR. It is demonstrated that anti-periodic symmetry of single-spin operators (Ix , Iy , Iz ) in the interaction frame can lead to complete annihilation of the1 H-1 H homonuclear dipolar coupling effects that induce line broadening in solid-state NMR experiments. This symmetry also plays a critical role in cancelling or minimizing the effect of1 H chemical-shift anisotropy in the effective Hamiltonian. An analytical description based on Floquet theory is presented here along with experimental evidences to understand the decoupling efficiency of supercycled (concatenated) rCW scheme.- Published
- 2017
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37. Parameter independent low-power heteronuclear decoupling for fast magic-angle spinning solid-state NMR.
- Author
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Equbal A, Madhu PK, Meier BH, Nielsen NC, Ernst M, and Agarwal V
- Abstract
Major advances have recently been made in the field of heteronuclear dipolar decoupling in solid-state nuclear magnetic resonance (NMR). These developments have improved the resolution and sensitivity of the NMR spectrum of spins coupled to protons. One such new scheme, denoted as rCW
ApA , has proven to be robust with practically no need for parameter optimization [A. Equbal et al. Chem. Phys. Lett., 635, 339 (2015)]. Most of the experiments with rCWApA have been carried out in the regimes of slow to moderate magic-angle spinning while simultaneously applying high decoupling radio-frequency amplitudes. Here, we explore the performance of the rCWApA sequence and its predecessor rCWA in the regime of low-power radio-frequency irradiation and fast magic-angle spinning. The robustness of the refocused continuous-wave (rCW) schemes to experimental parameters such as pulse lengths and offset irradiation is demonstrated. Numerical simulations and analytical theory have been used to understand the effects of various nuclear spin interactions on the decoupling performance of the low-power rCW decoupling scheme relative to other decoupling methods. This has lead to the design of an "optimum low-power decoupling sequence" that can be used without parameter optimization. This result is particularly important in the context of samples with low signal to noise.- Published
- 2017
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38. Reactive Center Loop Insertion in α-1-Antitrypsin Captured by Accelerated Molecular Dynamics Simulation.
- Author
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Andersen OJ, Risør MW, Poulsen EC, Nielsen NC, Miao Y, Enghild JJ, and Schiøtt B
- Subjects
- Amino Acid Sequence, Animals, Cattle, Cloning, Molecular, Gene Expression, Humans, Kinetics, Mutation, Protein Interaction Domains and Motifs, Protein Structure, Secondary, Recombinant Proteins chemistry, Recombinant Proteins genetics, Static Electricity, Structure-Activity Relationship, Thermodynamics, alpha 1-Antitrypsin genetics, Aspartic Acid chemistry, Molecular Dynamics Simulation, Trypsin chemistry, alpha 1-Antitrypsin chemistry
- Abstract
Protease inhibition by metastable serine protease inhibitors (serpins) is mediated by one of the largest functional intradomain conformational changes known in biology. In this extensive structural rearrangement, protease-serpin complex formation triggers cleavage of the serpin reactive center loop (RCL), its subsequent insertion into central β-sheet A, and covalent trapping of the target protease. In this study, we present the first detailed accelerated molecular dynamics simulation of the insertion of the fully cleaved RCL in α-1-antitrypsin (α
1 AT), the archetypal member of the family of human serpins. Our results reveal internal water pathways that allow the initial incorporation of side chains of RCL residues into the protein interior. We observed structural plasticity of the helix F (hF) element that blocks the RCL path in the native state, which is in excellent agreement with previous experimental reports. Furthermore, the simulation suggested a novel role of hF and the connected turn (thFs3A) as chaperones that support the insertion process by reducing the conformational space available to the RCL. Transient electrostatic interactions of RCL residues potentially fine-tune the serpin inhibitory activity. On the basis of our simulation, we generated the α1 AT mutants K168E, E346K, and K168E/E346K and analyzed their inhibitory activity along with their intrinsic stability and heat-induced polymerization. Remarkably, the E346K mutation exhibited enhanced inhibitory activity along with an increased rate of premature structural collapse (polymerization), suggesting a significant role of E346 in the gatekeeping of the strain in the metastable native state.- Published
- 2017
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39. Local SAR, global SAR, and power-constrained large-flip-angle pulses with optimal control and virtual observation points.
- Author
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Vinding MS, Guérin B, Vosegaard T, and Nielsen NC
- Subjects
- Absorption, Physicochemical, Adult, Algorithms, Computer Simulation, Head diagnostic imaging, Humans, Male, Phantoms, Imaging, Torso diagnostic imaging, Magnetic Resonance Imaging methods
- Abstract
Purpose: To present a constrained optimal-control (OC) framework for designing large-flip-angle parallel-transmit (pTx) pulses satisfying hardware peak-power as well as regulatory local and global specific-absorption-rate (SAR) limits. The application is 2D and 3D spatial-selective 90° and 180° pulses., Theory and Methods: The OC gradient-ascent-pulse-engineering method with exact gradients and the limited-memory Broyden-Fletcher-Goldfarb-Shanno method is proposed. Local SAR is constrained by the virtual-observation-points method. Two numerical models facilitated the optimizations, a torso at 3 T and a head at 7 T, both in eight-channel pTx coils and acceleration-factors up to 4., Results: The proposed approach yielded excellent flip-angle distributions. Enforcing the local-SAR constraint, as opposed to peak power alone, reduced the local SAR 7 and 5-fold with the 2D torso excitation and inversion pulse, respectively. The root-mean-square errors of the magnetization profiles increased less than 5% with the acceleration factor of 4., Conclusion: A local and global SAR, and peak-power constrained OC large-flip-angle pTx pulse design was presented, and numerically validated for 2D and 3D spatial-selective 90° and 180° pulses at 3 T and 7 T. Magn Reson Med 77:374-384, 2017. © 2015 Wiley Periodicals, Inc., (© 2015 Wiley Periodicals, Inc.)
- Published
- 2017
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40. Highly efficient 19 F heteronuclear decoupling in solid-state NMR spectroscopy using supercycled refocused-CW irradiation.
- Author
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Equbal A, Basse K, and Nielsen NC
- Abstract
We present heteronuclear
19 F refocused CW (rCW) decoupling pulse sequences for solid-state magic-angle-spinning NMR applications. The decoupling sequences have been designed specifically to ensure suppression of the pertinent13 C-19 F dipolar coupling interactions while simultaneously suppressing strong anisotropic chemical shift as well as homonuclear19 F-19 F dipolar coupling effects as typically present in perfluorated compounds. In an extensive numerical and experimental analysis using a rigid, organic solid as a model compound, it becomes evident that the supercycled rCW schemes markedly improve the decoupling efficiency, leading to substantial enhancements in resolution and sensitivity when compared to previous state-of-the-art methods. Furthermore, considerable gains in robustness toward rf mismatch as well as offset in the radio-frequency carrier frequency are observed, all of which clearly render the new rCW schemes the methods of choice for19 F decoupling in rigid, fluorinated compounds - which is further supported by a Floquet-based theoretical analysis.- Published
- 2016
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41. Mild heat treatments induce long-term changes in metabolites associated with energy metabolism in Drosophila melanogaster.
- Author
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Sarup P, Petersen SM, Nielsen NC, Loeschcke V, and Malmendal A
- Subjects
- Animals, Gene Expression Regulation, Developmental physiology, Male, Metabolome physiology, Aging physiology, Drosophila Proteins metabolism, Drosophila melanogaster physiology, Energy Metabolism physiology, HSP72 Heat-Shock Proteins metabolism, Heat-Shock Response physiology, Thermotolerance physiology
- Abstract
Heat-induced hormesis, the beneficial effect of mild heat-induced stress, increases the average lifespan of many organisms. Yet little is known about the mechanisms underlying this effect. We used nuclear magnetic resonance spectroscopy to investigate the long-term effects of repeated mild heat treatments on the metabolome of male Drosophila melanogaster. 10 days after the heat treatment, metabolic aging appears to be slowed down, and a treatment response with 40 % higher levels of alanine and lactate and lower levels of aspartate and glutamate were measured. All treatment effects had disappeared 16 days later. Metabolic reprogramming has been associated with the life extending effects of dietary restriction. The metabolite changes induced by the hormetic treatment suggest that the positive effects might not be limited to the repair pathways induced, but that there also is a change in energy metabolism. A possible direct link between changes in energy metabolism and heat induced increase in Hsp70 expression is discussed.
- Published
- 2016
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42. Theranostic tumor targeted nanoparticles combining drug delivery with dual near infrared and 19 F magnetic resonance imaging modalities.
- Author
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Vu-Quang H, Vinding MS, Nielsen T, Ullisch MG, Nielsen NC, and Kjems J
- Subjects
- Humans, Magnetic Resonance Imaging, Neoplasms diagnosis, Neoplasms drug therapy, Antibiotics, Antineoplastic administration & dosage, Doxorubicin administration & dosage, Nanoparticles, Theranostic Nanomedicine
- Abstract
Combining imaging and drug delivery of "theranostic" nanoparticles has enabled concurrent diagnosis and therapy of diseases. Here, we describe a novel theranostic system that combines two imaging tracers, perfluorooctyl bromide (PFOB) for
19 F magnetic resonance imaging (MRI) and indocyanine green (ICG) for near infrared (NIR) imaging, with the chemotherapeutic agent doxorubicin (Dox) into poly (lactic-co-glycolic acid)- poly (ethylene-glycol)-folate (PLGA-PEG-folate) nanoparticles. Cell culture studies using flow cytometry, confocal laser scanning microscope imaging, and19 F MRI showed enhanced uptake of nanoparticles via folate receptors expressed on human nasopharyngeal epidermal carcinoma (KB) cells. In vivo, higher MRI and fluorescence signals were obtained from tumors with19 F MRI and NIR, respectively, using folate-receptor-targeted nanoparticles compared with non-targeted equivalents. An in vitro cytotoxicity assay showed that folate-targeted nanoparticles were able to kill cancer cells more efficiently than non-folate conjugated particles. Our results suggest a potential use of PLGA-PEG-folate PFOB/ICG/Dox nanoparticles as a targeted chemotherapy agent traceable by either19 F MRI or NIR imaging., (Copyright © 2016 Elsevier Inc. All rights reserved.)- Published
- 2016
- Full Text
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43. Handling the influence of chemical shift in amplitude-modulated heteronuclear dipolar recoupling solid-state NMR.
- Author
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Basse K, Shankar R, Bjerring M, Vosegaard T, Nielsen NC, and Nielsen AB
- Subjects
- Amyloid chemistry, Computer Simulation, Glycine chemistry, Oligopeptides chemistry, Magnetic Resonance Spectroscopy, Models, Chemical
- Abstract
We present a theoretical analysis of the influence of chemical shifts on amplitude-modulated heteronuclear dipolar recoupling experiments in solid-state NMR spectroscopy. The method is demonstrated using the Rotor Echo Short Pulse IRrAdiaTION mediated Cross-Polarization ((RESPIRATION)CP) experiment as an example. By going into the pulse sequence rf interaction frame and employing a quintuple-mode operator-based Floquet approach, we describe how chemical shift offset and anisotropic chemical shift affect the efficiency of heteronuclear polarization transfer. In this description, it becomes transparent that the main attribute leading to non-ideal performance is a fictitious field along the rf field axis, which is generated from second-order cross terms arising mainly between chemical shift tensors and themselves. This insight is useful for the development of improved recoupling experiments. We discuss the validity of this approach and present quaternion calculations to determine the effective resonance conditions in a combined rf field and chemical shift offset interaction frame transformation. Based on this, we derive a broad-banded version of the (RESPIRATION)CP experiment. The new sequence is experimentally verified using SNNFGAILSS amyloid fibrils where simultaneous (15)N → (13)CO and (15)N → (13)Cα coherence transfer is demonstrated on high-field NMR instrumentation, requiring great offset stability.
- Published
- 2016
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44. In situ high-resolution structure of the baseplate antenna complex in Chlorobaculum tepidum.
- Author
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Nielsen JT, Kulminskaya NV, Bjerring M, Linnanto JM, Rätsep M, Pedersen MØ, Lambrev PH, Dorogi M, Garab G, Thomsen K, Jegerschöld C, Frigaard NU, Lindahl M, and Nielsen NC
- Subjects
- Anisotropy, Chlorobi metabolism, Circular Dichroism, Cryoelectron Microscopy, Imaging, Three-Dimensional, Light-Harvesting Protein Complexes chemistry, Magnetic Resonance Spectroscopy, Models, Molecular, Organelles metabolism, Organelles ultrastructure, Reproducibility of Results, Chlorobi ultrastructure, Light-Harvesting Protein Complexes ultrastructure
- Abstract
Photosynthetic antenna systems enable organisms harvesting light and transfer the energy to the photosynthetic reaction centre, where the conversion to chemical energy takes place. One of the most complex antenna systems, the chlorosome, found in the photosynthetic green sulfur bacterium Chlorobaculum (Cba.) tepidum contains a baseplate, which is a scaffolding super-structure, formed by the protein CsmA and bacteriochlorophyll a. Here we present the first high-resolution structure of the CsmA baseplate using intact fully functional, light-harvesting organelles from Cba. tepidum, following a hybrid approach combining five complementary methods: solid-state NMR spectroscopy, cryo-electron microscopy, isotropic and anisotropic circular dichroism and linear dichroism. The structure calculation was facilitated through development of new software, GASyCS for efficient geometry optimization of highly symmetric oligomeric structures. We show that the baseplate is composed of rods of repeated dimers of the strongly amphipathic CsmA with pigments sandwiched within the dimer at the hydrophobic side of the helix.
- Published
- 2016
- Full Text
- View/download PDF
45. Improved transfer efficiencies in radio-frequency-driven recoupling solid-state NMR by adiabatic sweep through the dipolar recoupling condition.
- Author
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Straasø LA, Shankar R, Tan KO, Hellwagner J, Meier BH, Hansen MR, Nielsen NC, Vosegaard T, Ernst M, and Nielsen AB
- Subjects
- Algorithms, Carbon Isotopes chemistry, Computer Simulation, Glycine chemistry, Models, Theoretical, Nitrogen Isotopes chemistry, Peptides chemistry, Magnetic Resonance Spectroscopy methods, Radio Waves
- Abstract
The homonuclear radio-frequency driven recoupling (RFDR) experiment is commonly used in solid-state NMR spectroscopy to gain insight into the structure of biological samples due to its ease of implementation, stability towards fluctuations/missetting of radio-frequency (rf) field strength, and in general low rf requirements. A theoretical operator-based Floquet description is presented to appreciate the effect of having a temporal displacement of the π-pulses in the RFDR experiment. From this description, we demonstrate improved transfer efficiency for the RFDR experiment by generating an adiabatic passage through the zero-quantum recoupling condition. We have compared the performances of RFDR and the improved sequence to mediate efficient (13)CO to (13)Cα polarization transfer for uniformly (13)C,(15)N-labeled glycine and for the fibril forming peptide SNNFGAILSS (one-letter amino acid codes) uniformly (13)C,(15)N-labeled at the FGAIL residues. Using numerically optimized sweeps, we get experimental gains of approximately 20% for glycine where numerical simulations predict an improvement of 25% relative to the standard implementation. For the fibril forming peptide, using the same sweep parameters as found for glycine, we have gains in the order of 10%-20% depending on the spectral regions of interest.
- Published
- 2016
- Full Text
- View/download PDF
46. Natural abundant (17) O NMR in a 1.5-T Halbach magnet.
- Author
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Sørensen MK, Bakharev ON, Jensen O, and Nielsen NC
- Subjects
- Acetone analysis, Electromagnetic Fields, Equipment Design, Ethanol analysis, Food Analysis, Neodymium, Oxygen Isotopes, Water analysis, Water Purification, Electromagnetic Phenomena, Magnetic Resonance Spectroscopy instrumentation, Magnets
- Abstract
We present mobile, low-field (17) O NMR as a means for monitoring oxygen in liquids. Whereas oxygen is one of the most important elements, oxygen NMR is limited by a poor sensitivity related to low natural abundance and gyro-magnetic ratio of the NMR active (17) O isotope. Here, we demonstrate (17) O NMR detection at a Larmor frequency of 8.74 MHz in a 1.5-T Halbach neodymium magnet with a home-built digital NMR instrument suitable for large-scale production and in-line monitoring applications. The proposed (17) O NMR sensor may be applied for direct, noninvasive measurements of water content in, for example, oil, manure, or food in automated quality or process control. Copyright © 2015 John Wiley & Sons, Ltd., (Copyright © 2015 John Wiley & Sons, Ltd.)
- Published
- 2016
- Full Text
- View/download PDF
47. Near-complete 1H, 13C, 15N resonance assignments of dimethylsulfoxide-denatured TGFBIp FAS1-4 A546T.
- Author
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Kulminskaya NV, Yoshimura Y, Runager K, Sørensen CS, Bjerring M, Andreasen M, Otzen DE, Enghild JJ, Nielsen NC, and Mulder FA
- Subjects
- Amino Acid Sequence, Carbon Isotopes, Humans, Nitrogen Isotopes, Protein Domains, Tritium, Dimethyl Sulfoxide pharmacology, Extracellular Matrix Proteins chemistry, Extracellular Matrix Proteins metabolism, Mutant Proteins chemistry, Mutant Proteins metabolism, Nuclear Magnetic Resonance, Biomolecular, Protein Denaturation drug effects, Transforming Growth Factor beta chemistry, Transforming Growth Factor beta metabolism
- Abstract
The transforming growth factor beta induced protein (TGFBIp) is a major protein component of the human cornea. Mutations occurring in TGFBIp may cause corneal dystrophies, which ultimately lead to loss of vision. The majority of the disease-causing mutations are located in the C-terminal domain of TGFBIp, referred as the fourth fascilin-1 (FAS1-4) domain. In the present study the FAS1-4 Ala546Thr, a mutation that causes lattice corneal dystrophy, was investigated in dimethylsulfoxide using liquid-state NMR spectroscopy, to enable H/D exchange strategies for identification of the core formed in mature fibrils. Isotope-labeled fibrillated FAS1-4 A546T was dissolved in a ternary mixture 95/4/1 v/v/v% dimethylsulfoxide/water/trifluoroacetic acid, to obtain and assign a reference 2D (1)H-(15)N HSQC spectrum for the H/D exchange analysis. Here, we report the near-complete assignments of backbone and aliphatic side chain (1)H, (13)C and (15)N resonances for unfolded FAS1-4 A546T at 25 °C.
- Published
- 2016
- Full Text
- View/download PDF
48. Relative merits of rCW(A) and XiX heteronuclear spin decoupling in solid-state magic-angle-spinning NMR spectroscopy: A bimodal Floquet analysis.
- Author
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Equbal A, Leskes M, Nielsen NC, Madhu PK, and Vega S
- Abstract
We present a bimodal Floquet analysis of the recently introduced refocused continuous wave (rCW) solid-state NMR heteronuclear dipolar decoupling method and compare it with the similar looking X-inverse X (XiX) scheme. The description is formulated in the rf interaction frame and is valid for both finite and ideal π pulse rCW irradiation that forms the refocusing element in the rCW scheme. The effective heteronuclear dipolar coupling Hamiltonian up to first order is described. The analysis delineates the difference between the two sequences to different orders of their Hamiltonians for both diagonal and off-diagonal parts. All the resonance conditions observed in experiments and simulations have been characterised and their influence on residual line broadening is highlighted. The theoretical comparison substantiates the numerical simulations and experimental results to a large extent., (Copyright © 2016 Elsevier Inc. All rights reserved.)
- Published
- 2016
- Full Text
- View/download PDF
49. Three pulse recoupling and phase jump matching.
- Author
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Lin J, Griffin RG, Nielsen NC, and Khaneja N
- Subjects
- Alanine chemistry, Algorithms, Computer Simulation, Glycine chemistry, Spin Labels, Magnetic Resonance Imaging methods
- Abstract
The paper describes a family of novel recoupling pulse sequences, called three pulse recoupling. These pulse sequences can be employed for both homonuclear and heteronuclear recoupling experiments and are robust to dispersion in chemical shifts and rf-inhomogeneity. These recoupling pulse sequences can be used in design of two-dimensional solid state NMR experiments that use powdered dephased antiphase coherence (γ preparation) to encode chemical shifts in the indirect dimension. Both components of this chemical shift encoded gamma-prepared states can be refocused into inphase coherence by a recoupling element. This helps to achieve sensitivity enhancement in 2D NMR experiments by quadrature detection., (Copyright © 2015 Elsevier Inc. All rights reserved.)
- Published
- 2016
- Full Text
- View/download PDF
50. Chitosan-coated poly(lactic-co-glycolic acid) perfluorooctyl bromide nanoparticles for cell labeling in (19)F magnetic resonance imaging.
- Author
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Vu-Quang H, Vinding MS, Xia D, Nielsen T, Ullisch MG, Dong M, Nielsen NC, and Kjems J
- Subjects
- Animals, Cell Line, Fluorocarbons chemistry, Humans, Hydrocarbons, Brominated, Macrophages metabolism, Mesenchymal Stem Cells metabolism, Mice, Nanoparticles metabolism, Polylactic Acid-Polyglycolic Acid Copolymer, Chitosan chemistry, Fluorine-19 Magnetic Resonance Imaging methods, Lactic Acid chemistry, Nanoparticles chemistry, Polyglycolic Acid chemistry
- Abstract
Noninvasive therapeutic cell tracking methods in living animals are important for understanding cell function and fate in connection with cell therapy. Here we report a new particle system based on chitosan-coated poly(lactic-co-glycolic acid) perfluorooctyl bromide (PLGA PFOB) nanoparticles designed for (19)F magnetic resonance imaging (MRI) cell tracking. Chitosan was adsorbed onto the PLGA PFOB nanoparticles through electric interactions, which led to an increase in the hydrodynamic size and a surface charge proportional to the coating weight ratio. Confocal laser scanning microscopy, flow cytometry analysis and (19)F-MRI showed that to achieve the highest labeling efficiency in vitro, the optimal weight ratio of chitosan to the PLGA PFOB nanoparticles was 1:10 for human mesenchymal stem cells (hMSCs) and 1:100 for Raw 264.7 macrophages. In vivo(19)F-MRI showed that (19)F labeled hMSCs remained at the injected site 24h after injection. Thus, this study validates that chitosan-coated PLGA PFOB nanoparticles have the potential to track cell migration in vivo., (Copyright © 2015 Elsevier Ltd. All rights reserved.)
- Published
- 2016
- Full Text
- View/download PDF
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