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Biophysical and socio-cultural factors have jointly shaped the distribution of global biodiversity, yet relatively few studies have quantitatively assessed the influence of social and ecological landscapes on wildlife distributions. We sought to determine whether social and ecological covariates shape the distribution of a cultural keystone species, the bearded pig (Sus barbatus). Drawing on a dataset of 295 total camera trap locations and 25,755 trap days across 18 field sites and three years in Sabah and Sarawak, Malaysian Borneo, we fitted occupancy models that incorporated socio-cultural covariates and ecological covariates hypothesized to influence bearded pig occupancy. We found that all competitive occupancy models included both socio-cultural and ecological covariates. Moreover, we found quantitative evidence supporting Indigenous pig hunting rights: predicted pig occupancy was positively associated with predicted high levels of Indigenous pig-hunting groups in low-accessibility areas, and predicted pig occupancy was positively associated with predicted medium and low levels of Indigenous pig-hunting groups in high-accessibility areas. These results suggest that bearded pig populations in Malaysian Borneo should be managed with context-specific strategies, promoting Indigenous pig hunting rights. We also provide important baseline information on bearded pig occupancy levels prior to the 2020–2021 outbreak of African Swine Fever (ASF), which caused social and ecological concerns after mass dieoffs of bearded pigs in Borneo. The abstract provided in Malay is in the Supplementary file.

Human activities shape the structure of landscapes in different ways and hence modify animal communities depending on the type and intensity of these activities. Here, we used a multispecies occupancy model (MSOM) to understand mammalian habitat use patterns across a mosaic of tropical dry forest in Colombia and elucidate whether forest cover is more important than its integrity and other landscape configuration metrics. Surprisingly, our data suggest that none of the factors (including forest integrity) had a substantial effect on the mean community habitat use or species richness of mammals across the Montes de Maria, and there was no strong evidence to suggest any particular pattern in the distribution of functional groups in the landscapes. However, the percentage of forest cover was substantially important for herbivores, and consistently showed a moderate effect on the entire community, carnivores guild some individual species. There was high variability in the responses of each species to the examined variables that hinder us from broad generalizations, but in general, we also detected a moderate positive effect of forest cover in both diet specialists and generalists and species with small home ranges. Omnivores, on the other hand, tended to occupy more heterogeneous sites (moderate positive effects). The lack of substantial effects on most species and the absence of threatened species across this anthropogenic landscape suggests that the current community is composed of species tolerant to habitat modifications, but not only diet generalist species. This is most likely due to a long filtering process caused by land use transformation. However, our results highlight the relevance of conserving forest patches regardless of their level of modification or any other landscape attributes for maintaining assemblages of mammals.

Agricultural expansion is the primary driver of ecological degradation across the tropics. Set-asides—uncultivated parts of agricultural landscapes, often on steep slopes and alongside rivers—may alleviate environmental impacts but can reduce the area cultivated. Here we model an approach to configuring set-asides aimed at optimizing ecological outcomes (biodiversity, above-ground carbon storage and nutrient cycling) without reducing net cultivation area. We compare set-asides in an oil palm landscape where all plantations adopt the same configuration (‘uniform’ approach) with a scenario where there can be variation in configuration among plantations (‘variable’ approach). We find that all set-aside configurations support substantial ecological values but that the best strategies involve set-asides, particularly alongside rivers, that are spatially targeted and variable among plantations. This ‘variable’ approach can increase ecological outcomes twofold over the ‘uniform’ approach without reducing net cultivation area. Our findings underscore the potential importance of well-planned set-asides for enhancing agricultural sustainability.

Anthropogenic-driven species extinctions are radically changing the biosphere. Biological communities may become increasingly similar to or dissimilar from one another via the processes of biotic homogenisation or heterogenisation. A key question is how the conversion of native forests to agriculture may influence these processes by driving changes in the occurrence patterns of restricted-range endemic species versus wide-ranging generalists. We examined biotic homogenisation and heterogenisation in bird communities on the Southeast Asian islands of Borneo, Sulawesi, Seram, Buru, Talaud and Sangihe. Each island is characterised by high levels of avian endemism, and unique spatial configuration of forest conversion to agriculture. Forest conversion to agriculture influenced the patterns of biotic homogenisation on five islands. Bird communities became increasingly dissimilar to forest reference communities relative to localised patterns of deforestation. Turnover led to species with larger global range-sizes dominating communities at the expense of island endemics and ecological specialists. Within islands, forest conversion did not result in clear changes to β-diversity, whereas between-island communities became increasingly similar with greater deforestation, implying that patterns of forest conversion profoundly affect biotic homogenisation. Our findings elucidate how continued conversion of forests is causing the replacement of endemic species by a small cohort of shared ubiquitous species with potentially strong negative consequences for ecosystem functioning and resilience. Halting reorganisation of the biosphere via the loss of range-restricted species and spread of wide-ranged generalists will require improved efforts to reduce the impacts of deforestation particularly in regions with high endemism.

Agricultural expansion drives biodiversity decline in forested tropical regions. Consequently, it is important to understand the conservation value of remnant forest in production landscapes. In a tropical landscape dominated by oil palm we characterized faunal communities across eight taxa occurring within riparian forest buffers, which are legally protected alongside rivers, and compared them to nearby recovering logged forest. Buffer width was the main predictor of species richness and abundance, with widths of 40-100 m on each side of the river supporting broadly equivalent levels of biodiversity to logged forest. However, width responses varied markedly among taxa, and buffers often lacked forest-dependent species. Much wider buffers than are currently mandated are needed to safeguard most species. The largest biodiversity gains are achieved by increasing relatively narrow buffers. To provide optimal conservation outcomes in tropical production landscapes we encourage policymakers to prescribe width requirements for key taxa and different landscape contexts., Newton-Ungku Omar Fund (grants 216433953, 537134717) – delivered by the British Council and funded by the UK Department for Business, Energy and Industrial Strategy and the Malaysian Industry-Government Group for High Technology – as well as the UK Natural Environment Research Council (NE/K016407/1, NE/K016261/1; https://lombok.nerc-hmtf.info/). MJS was supported by a Research Leadership Award from the Leverhulme Trust.

Significance Forest restoration has become a global conservation priority, particularly in the tropics where a significant proportion of remaining forest ecosystems are degraded. To achieve ambitious restoration targets via limited conservation funds, areas that will deliver the greatest biodiversity value must be prioritized. Here, we combine airborne laser scanning with an extensive camera trap dataset to target conservation and restoration across a degraded logged forest gradient. We demonstrate the importance of accounting for three-dimensional habitat structure when defining forest suitability and restoration potential for mammals. Consequently, we provide a robust quantitative framework to prioritize degraded forest restoration based on biodiversity considerations., Tropical forest ecosystems are facing unprecedented levels of degradation, severely compromising habitat suitability for wildlife. Despite the fundamental role biodiversity plays in forest regeneration, identifying and prioritizing degraded forests for restoration or conservation, based on their wildlife value, remains a significant challenge. Efforts to characterize habitat selection are also weakened by simple classifications of human-modified tropical forests as intact vs. degraded, which ignore the influence that three-dimensional (3D) forest structure may have on species distributions. Here, we develop a framework to identify conservation and restoration opportunities across logged forests in Borneo. We couple high-resolution airborne light detection and ranging (LiDAR) and camera trap data to characterize the response of a tropical mammal community to changes in 3D forest structure across a degradation gradient. Mammals were most responsive to covariates that accounted explicitly for the vertical and horizontal characteristics of the forest and actively selected structurally complex environments comprising tall canopies, increased plant area index throughout the vertical column, and the availability of a greater diversity of niches. We show that mammals are sensitive to structural simplification through disturbance, emphasizing the importance of maintaining and enhancing structurally intact forests. By calculating occurrence thresholds of species in response to forest structural change, we identify areas of degraded forest that would provide maximum benefit for multiple high-conservation value species if restored. The study demonstrates the advantages of using LiDAR to map forest structure, rather than relying on overly simplistic classifications of human-modified tropical forests, for prioritizing regions for restoration.

Indonesia is embarking on an ambitious relocation of its capital city to Kalimantan, Borneo, bringing with it major urban and road infrastructure. Yet, despite being one of the world's most biologically diverse regions, the potential implications of this development for wildlife have yet to be fully assessed. We explored the potential impacts of the capital relocation, and road expansion and upgrades to critical habitat for medium-large mammals (1 kg) using camera trap data from 11 forested landscapes. We applied Bayesian multi-species occupancy models to predict community and species-level responses to anthropogenic and environmental factors. We extrapolated spatial patterns of occupancy and species diversity across the forests of Kalimantan and identified "critical habitats" as the top 20th percentile of occupancy and species richness values. We subsequently overlapped these critical habitat layers with infrastructure impact zones to estimate the area that could potentially be affected by direct or secondary impacts. At both the community and species-level, distance to primary roads had the strongest negative influence on habitat-use. Occupancy was also influenced by forest quality and multidimensional poverty conditions in adjacent villages, demonstrating the sensitivity of biodiversity to socio-ecological pressures. Less than 1 % of the critical habitat for the threatened mammal community lay within the direct impact zone (30 km radius) of the capital relocation. However, approximately 16 % was located within 200 km and could potentially be affected by uncontrolled secondary impacts such as urban sprawl and associated regional development. The often-overlooked secondary implications of upgrading existing roads could also intersect a large amount of critical habitat for lowland species. Mitigating far-reaching secondary impacts of infrastructure development should be fully incorporated into environmental impact assessments. This will provide Indonesia with an opportunity to set an example of sustainable infrastructure development in the tropics.

The Wallacea biogeographic region of Sulawesi, the Moluccas and Lesser Sunda is globally renowned for exceptional endemism, but is currently emerging as a development frontier in Indonesia. We assessed patterns and drivers of forest loss and fragmentation across the region, and used dynamic deforestation models to project future deforestation to 2053. Up to 10 231 km2 was deforested between 2000 and 2018, and a further 49 570 km2 is expected to be lost by 2053, with annual deforestation rates ranging between 0.09% and 2.17% in different sub-regions (average: 1.23%). Key biodiversity areas (priority sites for endemic and threatened biodiversity) are particularly vulnerable to deforestation if they are small, coastal and unprotected. Sub-regional variation in deforestation patterns and drivers must be acknowledged if conservation interventions are to be targeted and effective. We provide a valuable baseline from which to monitor Wallacea’s new development course, as Indonesia undergoes profound policy changes that will provide both challenges and opportunities for environmental governance and conservation.

Arboreal mammals form a diverse group providing ecologically important functions such as predation, pollination and seed dispersal. However, their cryptic and elusive nature, and the heights at which they live, makes studying these species challenging. Consequently, our knowledge of rainforest mammals is heavily biased towards terrestrial species, limiting our understanding of overall community structure and the possible impacts of human-induced disturbance. We undertook the first in-depth appraisal of an arboreal mammal community in Southeast Asia, using camera-traps set in unlogged and logged tropical rainforest in Sabah, Borneo. Using paired canopy and terrestrial camera-traps at 50 locations (25 in unlogged forest, 25 in logged), we assessed the effectiveness of camera-trapping at characterising the arboreal versus terrestrial community, and tested the influence of strata and forest type on community structure and composition. The paired design detected 55 mammal species across 15,817 camera-trap nights (CTNs), and additional canopy sampling in a subset of trees added a further two arboreal species to the inventory. In total, thirty species were detected exclusively by terrestrial camera-traps, eighteen exclusively by canopy camera-traps, and nine by units set at both heights, demonstrating significant differences between arboreal and terrestrial communities. This pattern was strongest in unlogged forest, reflecting greater structural diversity of this habitat, but held in logged forest as well. Species accumulation curves revealed that canopy camera-trapping significantly boosted species inventories compared to terrestrial-only sampling, and was particularly effective at detecting gliding mammals, rodents and primates. Canopy inventories took longer to reach an asymptote, suggesting that a greater sampling effort is required when deploying canopy camera-traps compared to those set on the ground. We demonstrate that arboreal mammals in Borneo’s rainforest form a diverse and distinct community, and can be sampled effectively using canopy camera-traps. However, the additional costs incurred by sampling in the canopy can be substantial. We provide recommendations to maximise sampling effectiveness, while bringing down costs, to help encourage further study into one of the last frontiers of tropical forest research.

As human-modified landscapes are increasing in the tropics, it becomes critical to understand how they affect mammal communities to reconcile conservation and development. We combined land cover information and camera-trapping data to explore the effects of agricultural expansion on mammals in the Magdalena river valley of Colombia. We estimated species diversity, evenness, and dominance across two agricultural landscapes, modified by cattle ranching and oil palm cultivation. We further assessed which variables influence species- and community-level occupancy using multi-species occupancy models. Results highlight that modified landscapes display lower species richness, diversity and evenness, and higher dominance than more pristine sites. Residual forest cover and distance to water had significant effect on community occupancy (positive and negative respectively). Forests were particularly important for pumas, ocelots, lowland pacas, Central American agoutis, and crab-eating raccoons while wetlands had a positive effect on jaguars, the apex predator in the region. The influence of anthropogenic pressure was not clearly evident, though pastures were not valuable habitats for any mammal species, as they had a negative, yet not significant, effect on species and community occupancy. In light of rapidly expanding agriculture across the tropics, our findings highlight species-specific responses to disturbance that can inform land use planning and conservation policies. We stress the conservation value of forest and wetland habitat to mammal occupancy in heterogeneous ecosystems. Moreover, our results demonstrate that oil palm and crop expansion should target existing pastures, which displayed limited conservation value for Neotropical mammals but occupy vast swathes of land across Latin America.

Agricultural expansion across the tropics is the primary driver of biodiversity declines and ecosystem service degradation. However, efforts to mitigate these negative impacts may reduce commodity production. We quantify trade-offs between oil palm cultivation and ecological outcomes (biodiversity, above-ground carbon storage and dung nutrient cycling) across different potential set-aside (uncultivated areas in agricultural landscapes) strategies. We show that all set-aside configurations yield substantial gains in ecological outcomes. The best strategy involves spatially targeted riparian reserves, such as those used in oil palm certification schemes, where species occurrence can be doubled without reducing overall cultivation area. Adopting this strategy throughout the 8 million hectares of plantations in Borneo would lead to extensive improvements in ecological outcomes without losses to production area, and consequently, enhancing agricultural sustainability.

Approaches to characterise and monitor biodiversity based on the sound signals of ecosystems have become popular in landscape ecology and biodiversity conservation. However, to date, validation studies of how well acoustic indices reflect observed biodiversity patterns have often relied on low levels of either spatial or temporal replication, while focussing on habitats with similar underlying anthropological and geophysical sound characteristics. For acoustic indices to be broadly applicable to biodiversity monitoring, their capacity to measure the ecological facets of soundscapes must be robust to these potential sources of bias. Using two contrasting recording approaches, we examined the efficacy of four commonly used acoustic indices to reflect patterns of observed bird species richness across a tropical forest degradation gradient in Northeast Borneo. The gradient comprised intact and logged forests, riparian forests, remnants, and oil palm plantations, thus providing a highly variable anthrophonic and geophonic soundscape. We compared the degree to which acoustic indices derived from automated versus point count recording methods detected variation in inter-habitat species richness, as well as their capacity to capture changes in species diversity as a consequence of forest degradation quantified by high-resolution LiDAR derived forest canopy heights. We found Acoustic Diversity Index was associated with forest canopy height as measured by both automated recorders and recordings from point counts, whereas the association between canopy height and Acoustic Complexity Index was only detected using point count recordings. For both types of recordings, Acoustic Complexity Index exhibited the strongest relationship with observed bird richness in old growth and logged forest, whereas Acoustic Diversity was not linked, suggesting avian richness does not drive its association with canopy height. No acoustic indices were associated with observed bird richness in oil palm riparian areas. Our findings underscore the potential utility of soundscape approaches to characterise biodiversity patterns in degraded tropical landscapes, and may be used as a proxy for human inventories of bird communities. However, we also show that for acoustic indices to be effective on landscape-wide studies of environmental gradients, adequate spatial replication is required, and care must be taken to control for non-target elements of soundscapes in different habitats.

Zero‐deforestation commitments seek to decouple agricultural production and forest loss to improve prospects for biodiversity. However, the effectiveness of methods designed to meet these commitments is poorly understood. In a highly fragmented tropical landscape dominated by oil palm, we tested the capacity for the High Carbon Stock (HCS) Approach to prioritize forest remnants that sustain mammal diversity. Patches afforded high priority by HCS protocols (100 ha core area) provided important refuges for IUCN‐threatened species and megafauna. However, patch‐scale HCS area recommendations conserved only 35% of the mammal community. At least 3,000 ha would be required to retain intact mammal assemblages, with nearly 10 times this area needed if hunting pressure was high. While current HCS protocols will safeguard patches capable of sustaining biodiversity, highly fragmented tropical landscapes typical of zero‐deforestation pledges will require thinking beyond the patch toward strategically configured forest remnants at the landscape level and enforcing strict controls on hunting.

Tigers are critically endangered due to deforestation and persecution. Yet in places, Sumatran tigers (Panthera tigris sumatrae) continue to coexist with people, offering insights for managing wildlife elsewhere. Here, we couple spatial models of encounter risk with information on tolerance from 2386 Sumatrans to reveal drivers of human–tiger conflict. Risk of encountering tigers was greater around populated villages that neighboured forest or rivers connecting tiger habitat; geographic profiles refined these predictions to three core areas. People’s tolerance for tigers was related to underlying attitudes, emotions, norms and spiritual beliefs. Combining this information into socio-ecological models yielded predictions of tolerance that were 32 times better than models based on social predictors alone. Pre-emptive intervention based on these socio-ecological predictions could have averted up to 51% of attacks on livestock and people, saving 15 tigers. Our work provides further evidence of the benefits of interdisciplinary research on conservation conflicts., Human-tiger conflict occurs where there is a higher risk of encountering tigers. Here, Struebig et al. use geographic profiling to predict risk of encounters in Sumatra, and show that combining risk measures with social data on tolerance could help prioritise regions for conflict mitigation efforts.

Blood‐feeding invertebrates are emerging model taxa in biodiversity assessments, both as indicators of mammal abundance and also as sources of mammal DNA for identification. Among these, terrestrial leeches arguably offer the greatest promise; they are abundant and widespread in the humid tropics, and their blood meals can be easily assayed to establish diet. Unfortunately, terrestrial leeches are understudied, with little known about their ecology and behavior. Such information is needed to evaluate their utility as ecological indicators and to account for potential sampling biases that might arise from habitat preferences. By combining occupancy modeling and thermal tolerance assays, we determined the factors affecting species occurrence in the related terrestrial brown (Haemadipsa sumatrana) and tiger leech (Haemadipsa picta), both of which are widespread in tropical forests in Southeast Asia. We sampled both species across a degraded forest landscape in Sabah, Borneo, in wet and dry seasons, associating occurrence with habitat‐level metrics. We found that, for both species, detection probability increased with canopy height regardless of season. Additionally, increased vegetation heterogeneity had a strong negative influence on brown leech occurrence in the dry season, implying an interaction between vegetation structure and climate. However, we found no difference in physiological thermal tolerance (CTMAX) between the two species. Finally, using a reduced dataset, we found a small improvement in brown leech model fit when including mammal abundance. Our results suggest that the presence of terrestrial leeches may act as useful ecological indicators of habitat quality and potentially mammalian abundance.

Tropical forests are globally important for both biodiversity conservation and the production of economically valuable wood products. To deliver both simultaneously, two contrasting approaches have been suggested: one partitions forests (sparing); the other integrates both objectives in the same location (sharing). To date, the ‘sparing or sharing’ debate has focused on agricultural landscapes, with scant attention paid to forest management. We explore the delivery of biodiversity and wood products in a continuum of sparing-to-sharing scenarios, using spatial optimization with set economic returns in East Kalimantan, Indonesia—a biodiversity hotspot. We found that neither sparing nor sharing extremes are optimal, although the greatest conservation value was attained towards the sparing end of the continuum. Critically, improved management strategies, such as reduced-impact logging, provided larger conservation gains than altering the balance between sparing and sharing, particularly for endangered species. Ultimately, debating sparing versus sharing has limited value while larger gains remain from improving forest management. To achieve both biodiversity conservation and timber production in tropical forests, this modelling study finds that improved management has much more impact than the choice between sparing forests or sharing forest land for both purposes.

Human-wildlife conflict is increasing due to rapid natural vegetation loss and fragmentation. We investigated seasonal, temporal and spatial trends of elephant crop-raiding in the Trans Mara, Kenya during 2014–2015 and compared our results with a previous study from 1999 to 2000. Our results show extensive changes in crop-raiding patterns. There was a 49% increase in incidents between 1999 -2000 and 2014–2015 but an 83% decline in the amount of damage per farm. Crop-raiding went from highly seasonal during 1999–2000 to year-round during 2014–2015, with crops being damaged at all growth stages. Additionally, we identified a new elephant group type involved in crop-raiding, comprising of mixed groups. Spatial patterns of crop-raiding also changed, with more incidents during 2014–2015 neighbouring the protected area, especially by bull groups. Crop-raiding intensity during 2014–15 increased with farmland area until a threshold of 0.4 km2 within a 1 km2 grid square, and farms within 1 km from the forest boundary, 2 km from village centres were most at risk of crop-raiding. In the last 20 years the Mara Ecosystem has been impacted by climate change, agricultural expansion and increased cattle grazing within protected areas. Elephants seem to have responded by crop-raiding closer to refuges, more frequently and throughout the year but cause less damage overall. While this means the direct economic impact has dropped, more farmers must spend more time protecting their fields, further reducing support for conservation in communities who currently receive few benefits from living with wildlife.

Multi-zoo comparisons of animal welfare are rare, and yet vital for ensuring continued improvement of zoo enclosures and husbandry. Methods are not standardized for the development of zoo enclosures based on multiple indicators, and case study species are required. This study compares behavior and breeding success to various enclosure and husbandry parameters for the Humboldt penguin, Spheniscus humboldti, for the development of improved enclosure design. Behavioral sampling was completed at Flamingo Land over a period of 8 months. Further data on behavior, enclosure design, and breeding success were collected via questionnaires, visits to zoos, and literature review. Breeding success was primarily influenced by colony age and number of breeding pairs, suggesting an important social influence on reproduction. Across zoos, there was also significant variation in behavior. The proportion of time spent in water varied between zoos (2-23%) and was used as an indicator of physical activity and natural behavior. Regression models revealed that water-use was best predicted by total enclosure area per penguin, followed by land area, with some evidence for positive influence of pool surface area per penguin. Predominantly linear/curvilinear increases in our biological indicators with enclosure parameters suggest that optimal conditions for S. humboldti were not met among the selected zoos. We propose revised minimum conditions for S. humboldti enclosure design, which exceed those in the existing husbandry guidelines. We present a framework for the evaluation of zoo enclosures and suggest that a rigorous scientific protocol be established for the design of new enclosures, based on multivariate methods. Zoo Biol. 35:385-397, 2016. © Wiley Periodicals, Inc.

International audience; Polyceratocarpus askhambryan-iringae, an endemic tree species of Annonaceae from the Udzungwa Mountains of Tanzania, is described and illustrated. The new species is identified as a member of the genus Polyceratocarpus by the combination of staminate and bisexual flowers, axillary inflorescences, subequal outer and inner petals, and multi-seeded monocarps with pitted seeds. From Polyceratocarpus scheffleri, with which it has previously been confused, it differs in the longer pedicels, smaller and thinner petals, shorter bracts, and by generally smaller, less curved monocarps that have a clear stipe and usually have fewer seeds. Because Polyceratocarpus askhambryan-iringae has a restricted extent of occurrence, area of occupancy, and ongoing degradation of its forest habitat, we recommend classification of it as Endangered (EN) on the IUCN Red List.

East African landscapes today are the result of the cumulative effects of climate and land-use change over millennial timescales. In this review, we compile archaeological and palaeoenvironmental data from East Africa to document land-cover change, and environmental, subsistence and land-use transitions, over the past 6000?years. Throughout East Africa there have been a series of relatively rapid and high-magnitude environmental shifts characterised by changing hydrological budgets during the mid- to late Holocene. For example, pronounced environmental shifts that manifested as a marked change in the rainfall amount or seasonality and subsequent hydrological budget throughout East Africa occurred around 4000, 800 and 300 radiocarbon years before present (yr BP). The past 6000?years have also seen numerous shifts in human interactions with East African ecologies. From the mid-Holocene, land use has both diversified and increased exponentially, this has been associated with the arrival of new subsistence systems, crops, migrants and technologies, all giving rise to a sequence of significant phases of land-cover change. The first large-scale human influences began to occur around 4000?yr BP, associated with the introduction of domesticated livestock and the expansion of pastoral communities. The first widespread and intensive forest clearances were associated with the arrival of iron-using early farming communities around 2500?yr BP, particularly in productive and easily-cleared mid-altitudinal areas. Extensive and pervasive land-cover change has been associated with population growth, immigration and movement of people. The expansion of trading routes between the interior and the coast, starting around 1300?years ago and intensifying in the eighteenth and nineteenth centuries CE, was one such process. These caravan routes possibly acted as conduits for spreading New World crops such as maize (Zea mays), tobacco (Nicotiana spp.) and tomatoes (Solanum lycopersicum), although the processes and timings of their introductions remains poorly documented. The introduction of southeast Asian domesticates, especially banana (Musa spp.), rice (Oryza spp.), taro (Colocasia esculenta), and chicken (Gallus gallus), via transoceanic biological transfers around and across the Indian Ocean, from at least around 1300?yr BP, and potentially significantly earlier, also had profound social and ecological consequences across parts of the region.\ud \ud Through an interdisciplinary synthesis of information and metadatasets, we explore the different drivers and directions of changes in land-cover, and the associated environmental histories and interactions with various cultures, technologies, and subsistence strategies through time and across space in East Africa. This review suggests topics for targeted future research that focus on areas and/or time periods where our understanding of the interactions between people, the environment and land-cover change are most contentious and/or poorly resolved. The review also offers a perspective on how knowledge of regional land-use change can be used to inform and provide perspectives on contemporary issues such as climate and ecosystem change models, conservation strategies, and the achievement of nature-based solutions for development purposes.

Borneo contains some of the world’s most biodiverse and carbon dense tropical forest, but this 750 000-km2 island has lost 62 % of its old-growth forests within the last 40 years. Efforts to protect and restore the remaining forests of Borneo hinge on recognising the ecosystem services they provide, including their ability to store and sequester carbon. Airborne Laser Scanning (ALS) is a remote sensing technology that allows forest structural properties to be captured in great detail across vast geographic areas. In recent years ALS has been integrated into state-wide assessment of forest carbon in Neotropical and African regions, but not yet in Asia. For this to happen, new regional models, need to be developed for estimating carbon stocks from ALS in tropical Asia, as the forests of this region are structurally and compositionally distinct from those found elsewhere in the tropics. By combining ALS imagery with data from 173 permanent forest plots spanning the lowland rain forests of Sabah, on the island of Borneo, we develop a simple-yet-general model for estimating forest carbon stocks using ALS-derived canopy height and canopy cover as input metrics. An advanced feature of this new model is the propagation of uncertainty in both ALS- and ground-based data, allowing uncertainty in hectare-scale estimates of carbon stocks to be quantified robustly. We show that the model effectively captures variation in aboveground carbons stocks across extreme disturbance gradients spanning tall dipterocarp forests and heavily logged regions, and clearly outperforms existing ALS-based models calibrated for the tropics, as well as currently available satellite-derived products. Our model provides a simple, generalised and effective approach for mapping forest carbon stocks in Borneo, and underpins ongoing efforts to safeguard and facilitate the restoration of its unique tropical forests.

Multi-zoo comparisons of animal welfare are rare, and yet vital for ensuring continued improvement of zoo enclosures and husbandry. Methods are not standardized for the development of zoo enclosures based on multiple indicators, and case study species are required. This study compares behavior and breeding success to various enclosure and husbandry parameters for the Humboldt penguin, Spheniscus humboldti, for the development of improved enclosure design. Behavioral sampling was completed at Flamingo Land over a period of 8 months. Further data on behavior, enclosure design, and breeding success were collected via questionnaires, visits to zoos, and literature review. Breeding success was primarily influenced by colony age and number of breeding pairs, suggesting an important social influence on reproduction. Across zoos, there was also significant variation in behavior. The proportion of time spent in water varied between zoos (2-23%) and was used as an indicator of physical activity and natural behavior. Regression models revealed that water-use was best predicted by total enclosure area per penguin, followed by land area, with some evidence for positive influence of pool surface area per penguin. Predominantly linear/curvilinear increases in our biological indicators with enclosure parameters suggest that optimal conditions for S. humboldti were not met among the selected zoos. We propose revised minimum conditions for S. humboldti enclosure design, which exceed those in the existing husbandry guidelines. We present a framework for the evaluation of zoo enclosures and suggest that a rigorous scientific protocol be established for the design of new enclosures, based on multivariate methods. Zoo Biol. 35:385-397, 2016. © Wiley Periodicals, Inc.

Context Agricultural expansion is a leading cause of deforestation and habitat fragmentation globally. Policies that support biodiversity and facilitate species movement across farmland are therefore central to sustainability efforts and wildlife conservation in these human-modified landscapes. Objectives We investigated the conservation impact of several potential management scenarios on animal populations and movement in a human-modified tropical landscape, focusing on the critically endangered Bornean orangutan, Pongo pygmaeus. Methods We used an individual-based modelling platform to simulate population dynamics and movements across four possible landscape management scenarios for a highly modified oil palm-dominated landscape in Sabah, Malaysian Borneo. Results Scenarios that maximised the retention of natural forest remnants in agricultural areas through sustainability certification standards supported stable orangutan populations. These populations were up to 45% larger than those supported under development-focused scenarios, where forest retention was not prioritised. The forest remnants served as corridors or stepping-stones, increasing annual emigration rates across the landscape, and reducing orangutan mortality by up to 11%. Sensitivity analyses demonstrated that this outcome was highly contingent on minimising mortality during dispersal. Conclusions Management that promotes maximising natural forest cover through certification, such as that promoted by the Roundtable on Sustainable Palm Oil, can maintain viable orangutan populations over the lifespan of an oil palm plantation and facilitate movement among otherwise isolated populations. However, minimising hunting and negative human–orangutan interactions, while promoting peaceful co-existence between apes and people, will be imperative to insure positive conservation outcomes.