39 results on '"Nick Byrne"'
Search Results
2. A Persistent Homology-Based Topological Loss Function for Multi-class CNN Segmentation of Cardiac MRI.
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Nick Byrne, James R. Clough, Giovanni Montana, and Andrew P. King
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- 2020
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3. Topology-Preserving Augmentation for CNN-Based Segmentation of Congenital Heart Defects from 3D Paediatric CMR.
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Nick Byrne, James R. Clough, Isra Valverde, Giovanni Montana, and Andrew P. King
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- 2019
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4. A persistent homology-based topological loss for CNN-based multi-class segmentation of CMR.
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Nick Byrne, James R. Clough, Isra Valverde, Giovanni Montana, and Andrew P. King
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- 2021
5. Videoconferencing in University Language Education
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Zuzana Bezdíčková, Libor Štěpánek, Kateřina Sedláčková, Nick Byrne
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- 2018
6. Utilizing 3D printing to facilitate surgical in-situ paediatric renal artery aneurysm repair for refractory hypertension
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Pankaj Chandak, Nicos Kessaris, Narayan Karunanithy, Nick Byrne, Joanna Newton, R. Bharadwaj, Sergio Assia-Zamora, Mohan Shenoy, Morad Sallam, and Manish D. Sinha
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Renal Artery ,Hypertension, Renovascular ,Adolescent ,Physiology ,Hypertension ,Printing, Three-Dimensional ,Internal Medicine ,Humans ,Female ,Kidney Diseases ,Cardiology and Cardiovascular Medicine ,Child ,Aneurysm - Abstract
Renal artery aneurysmal (RAA) disease is a rare, but potentially life-threatening cause of renovascular disease presenting with hypertension. Conventional management involves aneurysmal excision followed by renal auto-transplantation. We present the management of a 13-year-old girl with complex multiple saccular aneurysmal disease of the left renal artery with hilar extension and symptomatic hypertension. We used 3D printing to print a patient-specific model that was not implanted in the patient but was used for surgical planning and discussion with the patient and their family. Endovascular options were precluded due to anatomical complexities. Following multi-disciplinary review and patient-specific 3D printing, she underwent successful in-situ RAA repair with intraoperative cooling, without the need for auto-transplantation. 3D printing enabled appreciation of aneurysmal spatial configuration and dimensions that also helped plan the interposition graft length needed following aneurysmal excision. The models provided informed multidisciplinary communications and proved valuable during the consent process with the family for this high-risk procedure. To our knowledge, this is the first reported case utilizing 3D printing to facilitate in-situ complex repair of RAA with intra-hilar extension for paediatric renovascular disease.
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- 2022
7. Criss-cross heart three-dimensional printed models in medical education: A multicenter study on their value as a supporting tool to conventional imaging
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Nick Byrne, Miguel Angel Silva Cerpa, Gorka Gomez, Israel Valverde, Shafkat Anwar, Maria Martin Talavera, Kuberan Pushparajah, Maria de Las Nieves Velasco Forte, Association for European Paediatric and Congenital Cardiology, Valverde, Israel, and Martín Talavera, María
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Models, Anatomic ,Medical education ,Embryology ,Histology ,education ,3d model ,Crisscross Heart ,Assessment ,Gross anatomy education ,Imaging, Three-Dimensional ,medicine ,Humans ,Complex congenital heart disease ,Child ,Congenital heart disease ,medicine.diagnostic_test ,Education, Medical ,business.industry ,Heart anatomy ,Magnetic resonance imaging ,General Medicine ,3D printing ,Criss-cross Heart ,Test (assessment) ,Multicenter study ,Printing, Three-Dimensional ,Workshops ,Anatomy ,business ,Tomography, X-Ray Computed ,Pediatric cardiology - Abstract
The utility of three-dimensional (3D) printed models for medical education in complex congenital heart disease (CHD) is sparse and limited. The purpose of this study was to evaluate the utility of 3D printed models for medical education in criss-cross hearts covering a wide range of participants with different levels of knowledge and experience, from medical students, clinical fellows up to senior medical personnel. Study participants were enrolled from four dedicated imaging workshops developed between 2016 and 2019. The study design was a non-randomized cross-over study to evaluate 127 participants' level of understanding of the criss-cross heart anatomy. This was evaluated using the scores obtained following teaching with conventional images (echocardiography and magnetic resonance imaging) versus a 3D printed model learning approach. A significant improvement in anatomical knowledge of criss-cross heart anatomy was observed when comparing conventional imaging test scores to 3D printed model tests [76.9% (61.5%–87.8%) vs. 84.6% (76.9%–96.2%), P < 0.001]. The increase in the questionnaire marks was statistically significant across all academic groups (consultants in pediatric cardiology, fellows in pediatric cardiology, and medical students). Ninety-four percent (120) and 95.2% (121) of the participants agreed or strongly agreed, respectively, that 3D models helped them to better understand the medical images. Participants scored their overall satisfaction with the 3D printed models as 9.1 out of 10 points. In complex CHD such as criss-cross hearts, 3D printed replicas improve the understanding of cardiovascular anatomy. They enhanced the teaching experience especially when approaching medical students., The Association for European Pediatric and Congenital Cardiology Junior Research Grant 2015 to support the 3D printing scientific project in the field of pediatric and congenital cardiology in Europe (to Dr. Maria Nieves Velasco Forte), Grant Number: AEPC-IWG-JRG2015
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- 2022
8. A Persistent Homology-Based Topological Loss Function for Multi-class CNN Segmentation of Cardiac MRI
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James R. Clough, Nick Byrne, Andrew P. King, and Giovanni Montana
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FOS: Computer and information sciences ,Connected component ,Persistent homology ,Computer science ,Computer Vision and Pattern Recognition (cs.CV) ,Image and Video Processing (eess.IV) ,Computer Science - Computer Vision and Pattern Recognition ,Image segmentation ,Electrical Engineering and Systems Science - Image and Video Processing ,Topology ,Article ,Image (mathematics) ,Computer Science::Computer Vision and Pattern Recognition ,Prior probability ,FOS: Electrical engineering, electronic engineering, information engineering ,A priori and a posteriori ,Segmentation ,Topology (chemistry) - Abstract
With respect to spatial overlap, CNN-based segmentation of short axis cardiovascular magnetic resonance (CMR) images has achieved a level of performance consistent with inter observer variation. However, conventional training procedures frequently depend on pixel-wise loss functions, limiting optimisation with respect to extended or global features. As a result, inferred segmentations can lack spatial coherence, including spurious connected components or holes. Such results are implausible, violating the anticipated topology of image segments, which is frequently known a priori. Addressing this challenge, published work has employed persistent homology, constructing topological loss functions for the evaluation of image segments against an explicit prior. Building a richer description of segmentation topology by considering all possible labels and label pairs, we extend these losses to the task of multi-class segmentation. These topological priors allow us to resolve all topological errors in a subset of 150 examples from the ACDC short axis CMR training data set, without sacrificing overlap performance., To be presented at the STACOM workshop at MICCAI 2020
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- 2021
9. MRI for Guided Right and Left Heart Cardiac Catheterization: A Prospective Study in Congenital Heart Disease
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Sascha Krueger, Nick Byrne, Tobias Schaeffter, Steffen Weiss, Kuberan Pushparajah, Mari Nieves Velasco Forte, Tarique Hussain, Israel Valverde, Sébastien Roujol, Yousef Arar, Reza Razavi, Surendranath R. Veeram Reddy, Phuoc Duong, and Bram Ruijsink
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Adult ,Heart Defects, Congenital ,medicine.medical_specialty ,Cardiac Catheterization ,Heart disease ,medicine.medical_treatment ,Population ,passive tracking ,Balloon ,Magnetic Resonance Imaging, Interventional ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,0302 clinical medicine ,Medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,Prospective Studies ,Prospective cohort study ,education ,Child ,Cardiac catheterization ,Original Research ,education.field_of_study ,cardiac catheterization ,Interventional ,business.industry ,medicine.disease ,congenital heart disease ,Magnetic Resonance Imaging ,Catheter ,medicine.anatomical_structure ,interventional MR ,Child, Preschool ,Heart catheterization ,Vascular resistance ,Radiology ,business - Abstract
[Background] Improvements in outcomes for patients with congenital heart disease (CHD) have increased the need for diagnostic and interventional procedures. Cumulative radiation risk is a growing concern. MRI-guided interventions are a promising ionizing radiation-free, alternative approach., [Purpose] To assess the feasibility of MRI-guided catheterization in young patients with CHD using advanced visualization passive tracking techniques., [Study Type] Prospective., [Population] A total of 30 patients with CHD referred for MRI-guided catheterization and pulmonary vascular resistance analysis (median age/weight: 4 years / 15 kg)., [Field Strength/Sequence] 1.5T; partially saturated (pSAT) real-time single-shot balanced steady-state free-precession (bSSFP) sequence., [Assessment] Images were visualized by a single viewer on the scanner console (interactive mode) or using a commercially available advanced visualization platform (iSuite, Philips). Image quality for anatomy and catheter visualization was evaluated by three cardiologists with >5 years' experience in MRI-catheterization using a 1–5 scale (1, poor, 5, excellent). Catheter balloon signal-to-noise ratio (SNR), blood and myocardium SNR, catheter balloon/blood contrast-to-noise ratio (CNR), balloon/myocardium CNR, and blood/myocardium CNR were measured. Procedure findings, feasibility, and adverse events were recorded. A fraction of time in which the catheter was visible was compared between iSuite and the interactive mode., [Statistical Tests] T-test for numerical variables. Wilcoxon signed rank test for categorical variables., [Results] Nine patients had right heart catheterization, 11 had both left and right heart catheterization, and 10 had single ventricle circulation. Nine patients underwent solely MRI-guided catheterization. The mean score for anatomical visualization and contrast between balloon tip and soft tissue was 3.9 ± 0.9 and 4.5 ± 0.7, respectively. iSuite provided a significant improvement in the time during which the balloon was visible in relation to interactive imaging mode (66 ± 17% vs. 46 ± 14%, P, [Data Conclusion] MRI-guided catheterizations were carried out safely and is feasible in children and adults with CHD. The pSAT sequence offered robust and simultaneous high contrast visualization of the catheter and cardiac anatomy.
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- 2020
10. Early experience of transcatheter correction of superior sinus venosus atrial septal defect with partial anomalous pulmonary venous drainage
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Israel Valverde, A. Hermuzi, Nick Byrne, M.I. Jones, Shakeel A. Qureshi, Eric Rosenthal, M. Riahi, M. Nieves Velasco Forte, and Alban Baruteau
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medicine.medical_specialty ,Vena Cava, Superior ,Percutaneous ,medicine.medical_treatment ,Left atrium ,030204 cardiovascular system & hematology ,Balloon inflation ,Heart Septal Defects, Atrial ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Humans ,Heart Atria ,030212 general & internal medicine ,Covered stent ,Heart septal defect ,medicine.diagnostic_test ,business.industry ,Stent ,Venous drainage ,Sinus venosus atrial septal defect ,medicine.disease ,medicine.anatomical_structure ,Pulmonary Veins ,Angiography ,Drainage ,Radiology ,Cardiology and Cardiovascular Medicine ,business - Abstract
Aims Superior sinus venosus atrial septal defect (SVASD) is commonly associated with partial anomalous pulmonary venous drainage (PAPVD). We aimed to describe the first series of percutaneous SVASD and PAPVD correction using a two-step simulation for procedural planning. Methods and results Patients with SVASD and right PAPVD with a clinical indication for correction were selected. They underwent an ex vivo procedural simulation on a 3D-printed model followed by an in vivo simulation using balloon inflation in the targeted stent landing zone. The percutaneous procedure consisted in deploying a 10-zig custom-made covered stent in the SVC-RA junction. Five patients were referred for preprocedural evaluation and were deemed suitable for percutaneous correction. The procedure was successful in all patients with no residual interatrial shunt and successful redirection of the pulmonary venous drainage to the left atrium. At a median clinical follow-up of 8.1 months (2.6-19.8), no adverse events were noted, and all patients showed clinical improvement. During follow-up, transthoracic echocardiography and multidetector cardiac tomography in four patients or invasive angiography in one patient demonstrated a patent SVC stent, and no residual SVASD and unobstructed PV drainage in all patients. Conclusions In selected patients using a two-stage simulation strategy, percutaneous correction of SVASD with PAPVD is feasible and safe, and led to favourable short-term outcomes.
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- 2018
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11. Interventional Correction of Sinus Venosus Atrial Septal Defect and Partial Anomalous Pulmonary Venous Drainage
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Israel Valverde, Tarique Hussain, Antony Hermuzi, Kuberan Pushparajah, Mari Nieves Velasco Forte, Pimpak Prachasilchai, Eric Rosenthal, Nick Byrne, Shakeel A. Qureshi, Markus Henningsson, Gur Mainzer, and Gorka Gómez Ciriza
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Sinus venosus ,medicine.medical_specialty ,3d printed ,business.industry ,Venous drainage ,Online video ,030204 cardiovascular system & hematology ,Sinus venosus atrial septal defect ,medicine.disease ,Atrial septal defects ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,0302 clinical medicine ,medicine.anatomical_structure ,Internal medicine ,cardiovascular system ,medicine ,Cardiology ,Radiology, Nuclear Medicine and imaging ,cardiovascular diseases ,Cardiology and Cardiovascular Medicine ,Cardiac magnetic resonance ,business ,Covered stent - Abstract
Sinus venosus atrial septal defects (SVASD) with partial anomalous pulmonary venous drainage (PAPVD) are conventionally treated surgically. Cardiac magnetic resonance (CMR) ([Figure 1][1], [Online Video 1][2]), patient-specific 3-dimensional (3D) printing ([Online Appendix][3]) and in vitro
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- 2018
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12. A novel 3D-printed hybrid simulation model for robotic-assisted kidney transplantation (RAKT)
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Nick Byrne, Ioannis Loukopoulos, Kamran Ahmed, Raphael Uwechue, Nizam Mamode, Nicos Kessaris, Pankaj Chandak, Petrut Gogalniceanu, and Jonathon Olsburgh
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Models, Anatomic ,medicine.medical_specialty ,3d printed ,Robotic assisted ,media_common.quotation_subject ,education ,030232 urology & nephrology ,Fidelity ,Environment controlled ,Health Informatics ,Virtual reality ,Brief Communication ,Kidney transplantation ,03 medical and health sciences ,Patient safety ,0302 clinical medicine ,Robotic Surgical Procedures ,Medicine ,Training ,Humans ,Medical physics ,media_common ,business.industry ,Equipment Design ,medicine.disease ,Robotic ,030220 oncology & carcinogenesis ,Printing, Three-Dimensional ,Robot ,Surgery ,business ,Simulation - Abstract
Robotic-assisted kidney transplantation (RAKT) offers key benefits for patients that have been demonstrated in several studies. A barrier to the wider uptake of RAKT is surgical skill acquisition. This is exacerbated by the challenges of modern surgery with reduced surgical training time, patient safety concerns and financial pressures. Simulation is a well-established method of developing surgical skill in a safe and controlled environment away from the patient. We have developed a 3D printed simulation model for the key step of the kidney transplant operation which is the vascular anastomosis. The model is anatomically accurate, based on the CT scans of patients and it incorporates deceased donor vascular tissue. Crucially, it was developed to be used in the robotic operating theatre with the operating robot to enhance its fidelity. It is portable and relatively inexpensive when compared with other forms of simulation such as virtual reality or animal lab training. It thus has the potential of being more accessible as a training tool for the safe acquisition of RAKT specific skills. We demonstrate this model here.
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- 2018
13. Morphological three-dimensional analysis of papillary muscles in borderline left ventricles
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Israel Valverde Perez, Mari Nieves Velasco Forte, John M. Simpson, Miguel Silva Vieira, Mohamed S. Nassar, Nick Byrne, Tarique Hussain, and Bram Ruijsink
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Male ,Three dimensional analysis ,Adolescent ,Heart Ventricles ,Left Ventricles ,030204 cardiovascular system & hematology ,030218 nuclear medicine & medical imaging ,Hypoplastic left heart syndrome ,Young Adult ,03 medical and health sciences ,Imaging, Three-Dimensional ,0302 clinical medicine ,Mitral valve ,Hypoplastic Left Heart Syndrome ,Humans ,Medicine ,Child ,Papillary muscle ,Retrospective Studies ,business.industry ,Ventricular wall ,Infant ,General Medicine ,Anatomy ,Papillary Muscles ,medicine.disease ,Magnetic Resonance Imaging ,Echocardiography, Doppler ,medicine.anatomical_structure ,Ventricle ,Child, Preschool ,Pediatrics, Perinatology and Child Health ,Mitral Valve ,Female ,Cardiology and Cardiovascular Medicine ,business ,Cardiac magnetic resonance - Abstract
ObjectiveMitral valve anatomy has a significant impact on potential surgical options for patients with hypoplastic or borderline left ventricle. Papillary muscle morphology is a major component regarding this aspect. The purpose of this study was to use cardiac magnetic resonance to describe the differences in papillary muscle anatomy between normal, borderline, and hypoplastic left ventricles.MethodsWe carried out a retrospective, observational cardiac magnetic resonance study of children (median age 5.36 years) with normal (n=30), borderline (n=22), or hypoplastic (n=13) left ventricles. Borderline and hypoplastic cases had undergone an initial hybrid procedure. Morphological features of the papillary muscles, location, and arrangement were analysed and compared across groups.ResultsAll normal ventricles had two papillary muscles with narrow pedicles; however, 18% of borderline and 46% of hypoplastic cases had a single papillary muscle, usually the inferomedial type. In addition, in borderline or hypoplastic ventricles, the supporting pedicle occasionally displayed a wide insertion along the ventricular wall. The length ratio of the superolateral support was significantly different between groups (normal: 0.46±0.08; borderline: 0.39±0.07; hypoplastic: 0.36±0.1; p=0.009). No significant difference, however, was found when analysing the inferomedial type (0.42±0.09; 0.38±0.07; 0.39±0.22, p=0.39). The angle subtended between supports was also similar among groups (113°±17°; 111°±51° and 114°±57°; p=0.99). A total of eight children with borderline left ventricle underwent biventricular repair. There were no significant differentiating features for papillary muscle morphology in this subgroup.ConclusionsThe superolateral support can be shorter or absent in borderline or hypoplastic left ventricle cases. The papillary muscle pedicles in these patients often show a broad insertion. These changes have important implications on surgical options and should be described routinely.
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- 2017
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14. Living the heart in three dimensions: applications of 3D printing in CHD - ERRATUM
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Nick Byrne, Mari Nieves Velasco Forte, Israel Valverde, Gorka Gomez, Kuberan Pushparajah, Tarique Hussain, Arno A.W. Roest, Monique R.M. Jongbloed, and John M. Simpson
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business.industry ,Pediatrics, Perinatology and Child Health ,3D printing ,Medicine ,General Medicine ,Cardiology and Cardiovascular Medicine ,business ,Data science - Published
- 2019
15. Improved co-registration of ex-vivo and in-vivo cardiovascular magnetic resonance images using heart-specific flexible 3D printed acrylic scaffold combined with non-rigid registration
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Radhouene Neji, Orod Razeghi, Louisa O'Neill, Adam Connolly, John Whitaker, Elad Anter, Mark D O'Neill, Rahul K Mukherjee, Reza Razavi, Esther Puyol-Antón, Nick Byrne, Kawal Rhode, Reza Nezafat, Steven A. Niederer, Martin J. Bishop, Andrew P. King, Cory M. Tschabrunn, Steven Williams, Sébastien Roujol, and Henry Chubb
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Models, Anatomic ,lcsh:Diseases of the circulatory (Cardiovascular) system ,3d printed ,Scaffold ,medicine.medical_specialty ,Short axis ,Sus scrofa ,Myocardial Infarction ,Co registration ,Myocardial Reperfusion Injury ,Ex-vivo CMR ,030204 cardiovascular system & hematology ,Ventricular Function, Left ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,0302 clinical medicine ,Predictive Value of Tests ,In vivo ,medicine ,Animals ,Radiology, Nuclear Medicine and imaging ,Pliability ,Angiology ,Co-registration ,Ventricular Remodeling ,Radiological and Ultrasound Technology ,medicine.diagnostic_test ,business.industry ,Myocardium ,Models, Cardiovascular ,Scar imaging ,Reproducibility of Results ,Magnetic resonance imaging ,3D printing ,Magnetic Resonance Imaging ,Disease Models, Animal ,lcsh:RC666-701 ,Chronic Disease ,Printing, Three-Dimensional ,Technical Notes ,Cardiology and Cardiovascular Medicine ,business ,Ex vivo ,Biomedical engineering - Abstract
Background Ex-vivo cardiovascular magnetic resonance (CMR) imaging has played an important role in the validation of in-vivo CMR characterization of pathological processes. However, comparison between in-vivo and ex-vivo imaging remains challenging due to shape changes occurring between the two states, which may be non-uniform across the diseased heart. A novel two-step process to facilitate registration between ex-vivo and in-vivo CMR was developed and evaluated in a porcine model of chronic myocardial infarction (MI). Methods Seven weeks after ischemia-reperfusion MI, 12 swine underwent in-vivo CMR imaging with late gadolinium enhancement followed by ex-vivo CMR 1 week later. Five animals comprised the control group, in which ex-vivo imaging was undertaken without any support in the LV cavity, 7 animals comprised the experimental group, in which a two-step registration optimization process was undertaken. The first step involved a heart specific flexible 3D printed scaffold generated from in-vivo CMR, which was used to maintain left ventricular (LV) shape during ex-vivo imaging. In the second step, a non-rigid co-registration algorithm was applied to align in-vivo and ex-vivo data. Tissue dimension changes between in-vivo and ex-vivo imaging were compared between the experimental and control group. In the experimental group, tissue compartment volumes and thickness were compared between in-vivo and ex-vivo data before and after non-rigid registration. The effectiveness of the alignment was assessed quantitatively using the DICE similarity coefficient. Results LV cavity volume changed more in the control group (ratio of cavity volume between ex-vivo and in-vivo imaging in control and experimental group 0.14 vs 0.56, p p p = 0.034). Following the non-rigid co-registration step of the process, the DICE similarity coefficients for the myocardium, LV cavity and scar were 0.93 (±0.02), 0.89 (±0.01) and 0.77 (±0.07) respectively and the myocardial tissue and LV cavity volumes had a ratio of 1.03 and 1.00 respectively. Conclusions The pattern of the morphological changes seen between the in-vivo and the ex-vivo LV differs between scar and healthy myocardium. A 3D printed flexible scaffold based on the in-vivo shape of the LV cavity is an effective strategy to minimize morphological changes in the ex-vivo LV. The subsequent non-rigid registration step further improved the co-registration and local comparison between in-vivo and ex-vivo data.
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- 2019
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16. Living the heart in three dimensions: applications of 3D printing in CHD
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Gorka Gomez, Israel Valverde, Nick Byrne, Arno A.W. Roest, Mari Nieves Velasco Forte, Monique R.M. Jongbloed, Tarique Hussain, Kuberan Pushparajah, John M. Simpson, and Association for European Paediatric and Congenital Cardiology
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Heart Defects, Congenital ,medicine.medical_specialty ,New horizons ,Heart disease ,education ,Cardiac catheterisation ,030204 cardiovascular system & hematology ,cardiac magnetic resonance ,Imaging modalities ,03 medical and health sciences ,0302 clinical medicine ,Humans ,Medicine ,In patient ,Medical physics ,030212 general & internal medicine ,Cardiac Surgical Procedures ,business.industry ,Models, Cardiovascular ,Anatomical segmentation ,General Medicine ,3D printing ,medicine.disease ,Clinical Practice ,Workflow ,CHD ,Printing, Three-Dimensional ,Pediatrics, Perinatology and Child Health ,Cardiology and Cardiovascular Medicine ,business - Abstract
Advances in biomedical engineering have led to three-dimensional (3D)-printed models being used for a broad range of different applications. Teaching medical personnel, communicating with patients and relatives, planning complex heart surgery, or designing new techniques for repair of CHD via cardiac catheterisation are now options available using patient-specific 3D-printed models. The management of CHD can be challenging owing to the wide spectrum of morphological conditions and the differences between patients. Direct visualisation and manipulation of the patients’ individual anatomy has opened new horizons in personalised treatment, providing the possibility of performing the whole procedure in vitro beforehand, thus anticipating complications and possible outcomes. In this review, we discuss the workflow to implement 3D printing in clinical practice, the imaging modalities used for anatomical segmentation, the applications of this emerging technique in patients with structural heart disease, and its limitations and future directions., MNV was awarded the Association for European Paediatric and Congenital Cardiology Junior research grant on 2015 to support the 3D printing scientific project in the field of paediatric and congenital cardiology in Europe.
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- 2019
17. Creating three dimensional models of the right ventricular outflow tract: influence of contrast, sequence, operator, and threshold
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Gerald F. Greil, Jaclyn E. Carberry, Mari Nieves Velasco Forte, Tarique Hussain, Animesh Tandon, Nicholas K. Brown, Nick Byrne, and Barbara E.U. Burkhardt
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Gadolinium DTPA ,Heart Defects, Congenital ,Patient-Specific Modeling ,Heart Ventricles ,Contrast Media ,Gadolinium ,030204 cardiovascular system & hematology ,Pulmonary Artery ,Magnetic resonance angiography ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,0302 clinical medicine ,Imaging, Three-Dimensional ,Predictive Value of Tests ,medicine ,Organometallic Compounds ,Ventricular outflow tract ,Humans ,Radiology, Nuclear Medicine and imaging ,Segmentation ,Cardiac imaging ,Observer Variation ,medicine.diagnostic_test ,business.industry ,Gadofosveset ,Models, Cardiovascular ,Reproducibility of Results ,Image segmentation ,Thresholding ,Angiography ,Cardiology and Cardiovascular Medicine ,Nuclear medicine ,business ,Magnetic Resonance Angiography ,medicine.drug - Abstract
The use of 3D printed models of the right ventricular outflow tract (RVOT) for surgical and interventional planning is growing and often requires image segmentation of cardiac magnetic resonance (CMR) images. Segmentation results may vary based on contrast, image sequence, signal threshold chosen by the operator, and manual post-processing. The purpose of this study was to determine potential biases and post-processing errors in image segmentation to enable informed decisions. Models of the RVOT and pulmonary arteries from twelve patients who had contrast enhanced CMR angiography with gadopentetate dimeglumine (GPD), gadofosveset trisodium (GFT), and a post-GFT inversion-recovery (IR) whole heart sequence were segmented, trimmed, and aligned by three operators. Geometric agreement and minimal RVOT diameters were compared between sequences and operators. To determine the contribution of threshold, interoperator variability was compared between models created by the same two operators using the same versus different thresholds. Geometric agreement by Dice between objects was high (intraoperator: 0.89-0.95; interoperator: 0.95-0.97), without differences between sequences. Minimal RVOT diameters differed on average by - 1.9 to - 1.3 mm (intraoperator) and by 0.4 to 1.4 mm (interoperator). The contribution of threshold to interoperator geometric agreement was not significant (same threshold: 0.96 ± 0.06, different threshold: 0.93 ± 0.05; p = 0.181), but minimal RVOT diameters were more variable with different versus constant thresholds (- 9.12% vs. 2.42%; p
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- 2019
18. Use of a semi-automated cardiac segmentation tool improves reproducibility and speed of segmentation of contaminated right heart magnetic resonance angiography
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Nick Byrne, Gerald F. Greil, Jeanne Dillenbeck, Adrian K. Dyer, Animesh Tandon, Maria de Las Nieves Velasco Forte, Tarique Hussain, and Song Zhang
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Heart Defects, Congenital ,Male ,Cardiac Catheterization ,Adolescent ,Contrast Media ,030204 cardiovascular system & hematology ,Article ,Magnetic resonance angiography ,Ventricular Outflow Obstruction ,030218 nuclear medicine & medical imaging ,Automation ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,Predictive Value of Tests ,Image Interpretation, Computer-Assisted ,Humans ,Medicine ,Radiology, Nuclear Medicine and imaging ,Segmentation ,Child ,Cardiac imaging ,Retrospective Studies ,Observer Variation ,Reproducibility ,medicine.diagnostic_test ,business.industry ,Reproducibility of Results ,Magnetic resonance imaging ,Child, Preschool ,Printing, Three-Dimensional ,Right heart ,Female ,Manual segmentation ,Cardiology and Cardiovascular Medicine ,business ,Nuclear medicine ,Magnetic Resonance Angiography ,Software ,Pediatric cardiology - Abstract
Three-dimensional printing has an increasing number of clinical applications in pediatric cardiology. Time required for dataset segmentation and conversion to stereolithography (STL) format remains a significant limitation. We investigated the impact of semi-automated cardiovascular-specific segmentation software on time and reproducibility of segmentation. Magnetic resonance angiograms (MRAs) of 19 patients undergoing intervention for right ventricular outflow lesions were segmented to demonstrate the right heart. STLs were created by two independent clinicians using semi-automated cardiovascular segmentation (SAS) and traditional manual segmentation (MS). Time was recorded and geometric STL disagreement was determined (0 % = no disagreement, 100 % = complete disagreement). MRA datasets were categorized as clean when only right heart structures were present in the MRA, or contaminated when left heart structures were also present and required removal. Eighteen (seven clean and 11 contaminated) cases were successfully segmented with both methods. Time to STL for clean datasets was faster with MS than SAS [median 209 s (IQR 192–252) vs. 296 s (272–317), p = 0.018] while contaminated datasets were faster with SAS [455 s (384–561) vs. 866 s (310–1429), p = 0.033]. Interobserver STL geometric disagreement was significantly lower using SAS than MS overall (0.70 ± 1.15 % vs. 1.31 ± 1.52 %, p = 0.030), and for the contaminated subset (0.81 ± 1.08 % vs. 1.75 ± 1.57 %, p = 0.036). Most geometric disagreement occurred at areas where left heart contamination was removed. Semi-automated segmentation was faster and more reproducible for contaminated datasets, while MS was faster but equally reproducible for clean datasets. Semi-automated segmentation methods are preferable for contaminated datasets and continued refinement of these tools should be supported.
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- 2016
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19. Explicit Topological Priors for Deep-Learning Based Image Segmentation Using Persistent Homology
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James R. Clough, Julia A. Schnabel, Nick Byrne, Andrew P. King, and Ilkay Oksuz
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Sequence ,Persistent homology ,Computer science ,Betti number ,business.industry ,Deep learning ,02 engineering and technology ,Image segmentation ,Topology ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,0302 clinical medicine ,Prior probability ,0202 electrical engineering, electronic engineering, information engineering ,020201 artificial intelligence & image processing ,Topological data analysis ,Segmentation ,Artificial intelligence ,business - Abstract
We present a novel method to explicitly incorporate topological prior knowledge into deep learning based segmentation, which is, to our knowledge, the first work to do so. Our method uses the concept of persistent homology, a tool from topological data analysis, to capture high-level topological characteristics of segmentation results in a way which is differentiable with respect to the pixelwise probability of being assigned to a given class. The topological prior knowledge consists of the sequence of desired Betti numbers of the segmentation. As a proof-of-concept we demonstrate our approach by applying it to the problem of left-ventricle segmentation of cardiac MR images of subjects from the UK Biobank dataset, where we show that it improves segmentation performance in terms of topological correctness without sacrificing pixelwise accuracy.
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- 2019
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20. Evaluation of a modified Cheatham-Platinum stent for the treatment of aortic coarctation by finite element modelling
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Matthieu De Beule, Mari Nieves Velasco Forte, Barbara E.U. Burkhardt, Tarique Hussain, Gareth J. Morgan, Nick Byrne, Francesco Iannaccone, and University of Zurich
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medicine.medical_specialty ,lcsh:Diseases of the circulatory (Cardiovascular) system ,medicine.medical_treatment ,0206 medical engineering ,610 Medicine & health ,02 engineering and technology ,030204 cardiovascular system & hematology ,03 medical and health sciences ,0302 clinical medicine ,medicine ,cardiovascular diseases ,10220 Clinic for Surgery ,Angioplasty and stenting ,cardiovascular surgery ,business.industry ,Stent ,equipment and supplies ,020601 biomedical engineering ,Finite element method ,stroke treatment – surgical ,surgical procedures, operative ,lcsh:RC666-701 ,10036 Medical Clinic ,cardiology ,Radiology ,paediatric and congenital heart disease’ including cardiovascular surgery ,business ,Stent design ,Research Paper - Abstract
Objectives Stent implantation for the treatment of aortic coarctation has become a standard approach for the management of older children and adults. Criteria for optimal stent design and construction remain undefined. This study used computational modelling to compare the performance of two generations of the Cheatham-Platinum stent (NuMED, Hopkinton, NY, USA) deployed in aortic coarctation using finite element analysis. Design Three-dimensional models of both stents, reverse engineered from microCT scans, were implanted in the aortic model of one representative patient. They were virtually expanded in the vessel with a 16 mm balloon and a pressure of 2 atm. Results The conventional stent foreshortened to 96.5% of its initial length, whereas the new stent to 99.2% of its initial length. Diameters in 15 slices across the conventional stent were 11.6–15 mm (median 14.2 mm) and slightly higher across the new stent: 10.7–15.3 mm (median 14.5 mm) (p= 0.021). Apposition to the vessel wall was similar: conventional stent 31.1% and new stent 28.6% of total stent area. Conclusions The new design Cheatham-Platinum stent showed similar deployment results compared to the conventional design. The new stent design showed slightly higher expansion, using the same delivery balloon. Patient-specific computational models can be used for virtual implantation of new aortic stents and promise to inform subsequent in vivo trials.
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- 2018
21. 3D printing provides unrivalled bespoke teaching tools for autologous free flap breast reconstruction
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Nick Byrne, Narayan Karunanithy, Saahil Mehta, and Jian Farhadi
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medicine.medical_specialty ,Mammaplasty ,medicine.medical_treatment ,Free flap breast reconstruction ,3D printing ,Breast Neoplasms ,030230 surgery ,Free Tissue Flaps ,03 medical and health sciences ,0302 clinical medicine ,X ray computed ,medicine ,Humans ,Mastectomy ,Bespoke ,medicine.diagnostic_test ,business.industry ,Angiography ,Middle Aged ,Surgery ,030220 oncology & carcinogenesis ,Printing, Three-Dimensional ,Female ,Tomography ,Tomography, X-Ray Computed ,business ,Software - Published
- 2016
- Full Text
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22. Videoconferencing in University Language Education
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Libor Štěpánek, Kateřina Sedláčková, and Nick Byrne
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Higher education ,business.industry ,Curriculum studies ,Context (language use) ,Language acquisition ,computer.software_genre ,Intercultural communication ,Videoconferencing ,ComputingMilieux_COMPUTERSANDEDUCATION ,Mathematics education ,Language education ,Sociology ,business ,computer - Abstract
Building on theory and research, this book aims to share good practices and innovative ideas which have been successfully applied in the area of videoconferencing in language teaching and learning in the context of higher education. It offers practical ideas and methodologies, advantages and challenges of new approaches, and the what, how and why of individual cases so that readers can apply them in their own contexts. It intends to help language teachers and teacher trainers develop skills and confidence and to inspire them to reflect on their own teaching practices. It also offers insights on the impact of videoconferencing practices on learners and learning processes.
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- 2018
- Full Text
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23. Višejezični učenici u londonskim osnovnim školama: politika, praksa i profesionalni razvoj
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Peter Skrandies, Dina Mehmedbegovic, Philip Harding-Esch, and Nick Byrne
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Plurilingualism ,Professional development ,Pedagogy ,multilingualism ,plurilingualism ,mainstream education ,London ,Mainstream ,Ocean Engineering ,Multilingualism ,Sociology - Abstract
This paper is a summary of a report section produced for LUCIDE (Languages in Urban Contexts: Integration and Diversity in Europe) project and network, funded by the EU Commission Lifelong learning programme 2011–2014, based on the collected primary and secondary data. This summary focuses on multilingualism in mainstream education. The full report addresses multilingualism in several other areas: public, economic, private sphere and urban spaces. It is available on: www.urbanlanguages.eu. Considering the size, population and complexity of London, our specific focus is on one local authority (out of an existing 33): the City of Westminster, geographically the heart of this metropolis. Westminster is in many ways representative of London language trends. It shows some of the most prominent features of multilingualism in London: an extraordinary linguistic variety with a wide distribution of languages, where no one language is dominant. The aim of this research is to gain insights into experiences of multilingual learners in London in regards to: education practice and relevant policies. Primary data was collected by a team of four researchers who consulted 82 professionals relevant to the identified spheres of practice. The methods used were interviews and questionnaires. The sampling was purposive in terms of relevant professions: education, social work, public services, police and finance and business sector professionals. The theoretical framework used to develop our approach is the typology of language use, which distinguishes: symbolic, pragmatic and authoritative language use., Ovaj je članak sažetak izvješća koje je napravljeno za LUCIDE (Languages in Urban Contexts: Integration and Diversity in Europe; Jezici u urbanim kontekstima: integracija i raznolikost u Europi) projekt i mrežu. Projekt je financiran iz Programa Europske unije za cjeloživotno učenje 2011.-2014., temeljem prikupljenih primarnih i sekundarnih podataka. Ovaj se sažetak fokusira na višejezičnost u osnovnoškolskom obrazovanju. Cjelovito izvješće govori o višejezičnosti u nekoliko ostalih područja: javnoj, gospodarskoj, privatnoj sferi te urbanim prostorima (dostupno na: www.urbanlanguages.eu) S obzirom na veličinu, stanovništvo i složenost Londona u radu je posebna pažnja usmjerena na lokalnu jedinicu (od postojeće 33): grad Westminster koji je zemljopisno srce ove metropole. Westminster je na mnogo načina predstavnik jezičnih trendova u Londonu. To pokazuje neke od najistaknutijih obilježja višejezičnosti Londona, kao što je izvanredna lingvistička raznolikost sa širokom rasprostranjenošću jezika, pri čemu niti jedan jezik nije dominantan. Cilj ovog istraživanja je stjecanje uvida u iskustva višejezičnih učenika u Londonu s obzirom na obrazovnu praksu i relevantne politike. Primarne podatke prikupio je tim od četiri istraživača koji su konzultirali 82 stručnjaka relevantna za identificirana područja prakse. Korištene su metode intervjuiranja i anketiranja. Uzorkovanje je svrhovito obuhvaćalo relevantne struke: obrazovanje, socijalni rad, javne službe, policiju i financije te stručnjake iz poslovnog sektora. Teorijski okvir za razvoj ovog pristupa je tipologija uporabe jezika koja razlikuje: simboličku, pragmatičnu i autoritativnu primjenu jezika.
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- 2018
24. Improved passive catheter tracking with positive contrast for CMR-guided cardiac catheterization using partial saturation (pSAT)
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Reza Razavi, Sébastien Roujol, Nick Byrne, Tobias Schaeffter, Amedeo Chiribiri, Mari Nieves Velasco Forte, Bram Ruijsink, Kawal Rhode, Tarique Hussain, Kuberan Pushparajah, Tevfik F Ismail, Mazen Alhrishy, Israel Valverde Perez, [Velasco Forte, Mari Nieves] Kings Coll London, St Thomas Hosp, Div Imaging Sci & Biomed Engn, 3rd Floor Lambeth Wing,Westminster Bridge Rd, London SE1 7EH, England, [Pushparajah, Kuberan] Kings Coll London, St Thomas Hosp, Div Imaging Sci & Biomed Engn, 3rd Floor Lambeth Wing,Westminster Bridge Rd, London SE1 7EH, England, [Schaeffter, Tobias] Kings Coll London, St Thomas Hosp, Div Imaging Sci & Biomed Engn, 3rd Floor Lambeth Wing,Westminster Bridge Rd, London SE1 7EH, England, [Valverde Perez, Israel] Kings Coll London, St Thomas Hosp, Div Imaging Sci & Biomed Engn, 3rd Floor Lambeth Wing,Westminster Bridge Rd, London SE1 7EH, England, [Rhode, Kawal] Kings Coll London, St Thomas Hosp, Div Imaging Sci & Biomed Engn, 3rd Floor Lambeth Wing,Westminster Bridge Rd, London SE1 7EH, England, [Ruijsink, Bram] Kings Coll London, St Thomas Hosp, Div Imaging Sci & Biomed Engn, 3rd Floor Lambeth Wing,Westminster Bridge Rd, London SE1 7EH, England, [Alhrishy, Mazen] Kings Coll London, St Thomas Hosp, Div Imaging Sci & Biomed Engn, 3rd Floor Lambeth Wing,Westminster Bridge Rd, London SE1 7EH, England, [Byrne, Nicholas] Kings Coll London, St Thomas Hosp, Div Imaging Sci & Biomed Engn, 3rd Floor Lambeth Wing,Westminster Bridge Rd, London SE1 7EH, England, [Chiribiri, Amedeo] Kings Coll London, St Thomas Hosp, Div Imaging Sci & Biomed Engn, 3rd Floor Lambeth Wing,Westminster Bridge Rd, London SE1 7EH, England, [Ismail, Tevfik] Kings Coll London, St Thomas Hosp, Div Imaging Sci & Biomed Engn, 3rd Floor Lambeth Wing,Westminster Bridge Rd, London SE1 7EH, England, [Hussain, Tarique] Kings Coll London, St Thomas Hosp, Div Imaging Sci & Biomed Engn, 3rd Floor Lambeth Wing,Westminster Bridge Rd, London SE1 7EH, England, [Razavi, Reza] Kings Coll London, St Thomas Hosp, Div Imaging Sci & Biomed Engn, 3rd Floor Lambeth Wing,Westminster Bridge Rd, London SE1 7EH, England, [Roujol, Sebastien] Kings Coll London, St Thomas Hosp, Div Imaging Sci & Biomed Engn, 3rd Floor Lambeth Wing,Westminster Bridge Rd, London SE1 7EH, England, [Velasco Forte, Mari Nieves] Guys & St Thomas NHS Fdn Trust, Evelina London Childrens Hosp, Dept Congenital Heart Dis, London, England, [Pushparajah, Kuberan] Guys & St Thomas NHS Fdn Trust, Evelina London Childrens Hosp, Dept Congenital Heart Dis, London, England, [Valverde Perez, Israel] Guys & St Thomas NHS Fdn Trust, Evelina London Childrens Hosp, Dept Congenital Heart Dis, London, England, [Razavi, Reza] Guys & St Thomas NHS Fdn Trust, Evelina London Childrens Hosp, Dept Congenital Heart Dis, London, England, [Velasco Forte, Mari Nieves] Univ Seville, CSIC, Virgen Rocio Univ Hosp, Cardiovasc Pathol Unit,Inst Biomed Seville,IBIS, Seville, Spain, [Valverde Perez, Israel] Univ Seville, CSIC, Virgen Rocio Univ Hosp, Cardiovasc Pathol Unit,Inst Biomed Seville,IBIS, Seville, Spain, [Schaeffter, Tobias] Guys & St Thomas NHS Fdn Trust, Dept Med Phys, London, England, [Hussain, Tarique] Univ Texas Southwestern Med Ctr Dallas, Dept Pediat, 1935 Med Dist Dr, Dallas, TX USA, Department of Health via the National Institute for Health Research (NIHR) comprehensive Biomedical Research Centre award to Guy's & St Thomas' NHS Foundation Trust, King's College London, King's College Hospital NHS Foundation Trust, Welcome Trust, and EPSRC
- Subjects
Male ,lcsh:Diseases of the circulatory (Cardiovascular) system ,Swine ,medicine.medical_treatment ,Magnetic-resonance ,Contrast Media ,030204 cardiovascular system & hematology ,Magnetic Resonance Imaging, Interventional ,Balloon ,Cardiac Catheters ,030218 nuclear medicine & medical imaging ,0302 clinical medicine ,Aortic-valve-replacement ,Device tracking ,Fluoroscopy ,Interventional CMR ,Cardiac catheterization ,Radiological and Ultrasound Technology ,Meglumine ,medicine.diagnostic_test ,3. Good health ,Catheter ,cardiovascular system ,Female ,Prospective randomized-trial ,Radiology ,Cardiology and Cardiovascular Medicine ,medicine.drug ,Adult ,Heart Defects, Congenital ,Interventional mri ,medicine.medical_specialty ,Adolescent ,03 medical and health sciences ,Predictive Value of Tests ,Image Interpretation, Computer-Assisted ,Ventricular-function ,Organometallic Compounds ,Bidirectional glenn anastomosis ,medicine ,Humans ,Real-time mri ,Radiology, Nuclear Medicine and imaging ,Angiology ,Congenital heart disease ,Congenital heart-disease ,Atrial septal puncture ,business.industry ,Balloon catheter ,lcsh:RC666-701 ,Case-Control Studies ,Feasibility Studies ,Technical Notes ,business - Abstract
Background Cardiac catheterization is a common procedure in patients with congenital heart disease (CHD). Although cardiovascular magnetic resonance imaging (CMR) represents a promising alternative approach to fluoroscopy guidance, simultaneous high contrast visualization of catheter, soft tissue and the blood pool remains challenging. In this study, a novel passive tracking technique is proposed for enhanced positive contrast visualization of gadolinium-filled balloon catheters using partial saturation (pSAT) magnetization preparation. Methods The proposed pSAT sequence uses a single shot acquisition with balanced steady-state free precession (bSSFP) readout preceded by a partial saturation pre-pulse. This technique was initially evaluated in five healthy subjects. The pSAT sequence was compared to conventional bSSFP images acquired with (SAT) and without (Non-SAT) saturation pre-pulse. Signal-to-noise ratio (SNR) of the catheter balloon, blood and myocardium and the corresponding contrast-to-noise ratio (CNR) are reported. Subjective assessment of image suitability for CMR-guidance and ideal pSAT angle was performed by three cardiologists. The feasibility of the pSAT sequence is demonstrated in two adult patients undergoing CMR-guided cardiac catheterization. Results The proposed pSAT approach provided better catheter balloon/blood contrast and catheter balloon/myocardium contrast than conventional Non-SAT sequences. It also resulted in better blood and myocardium SNR than SAT sequences. When averaged over all volunteers, images acquired with a pSAT angle of 20° to 40° enabled simultaneous visualization of the catheter balloon and the cardiovascular anatomy (blood and myocardium) and were found suitable for CMR-guidance in >93% of cases. The pSAT sequence was successfully used in two patients undergoing CMR-guided diagnostic cardiac catheterization. Conclusions The proposed pSAT sequence offers real-time, simultaneous, enhanced contrast visualization of the catheter balloon, soft tissues and blood. This technique provides improved passive tracking capabilities during CMR-guided catheterization in patients. Electronic supplementary material The online version of this article (doi:10.1186/s12968-017-0368-0) contains supplementary material, which is available to authorized users.
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- 2017
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25. 3D printed models in patients with coronary artery fistulae: anatomical assessment and interventional planning
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Reza Razavi, Nick Byrne, Mari Nieves Velasco Forte, Thomas Krasemann, Tarique Hussain, John M. Simpson, Israel Valverde Perez, Gorka Gomez-Ciriza, Horst Sievert, Shakeel A. Qureshi, Kuberan Pushparajah, and Aaron Bell
- Subjects
Adult ,Male ,Models, Anatomic ,medicine.medical_specialty ,3d printed ,education ,Clinical Decision-Making ,Coronary Artery Disease ,030204 cardiovascular system & hematology ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Humans ,In patient ,Medical diagnosis ,Aged ,Vascular Fistula ,medicine.diagnostic_test ,Interventional cardiology ,business.industry ,Volume rendering ,Magnetic resonance imaging ,Middle Aged ,Cardiac Imaging Techniques ,medicine.anatomical_structure ,Child, Preschool ,Printing, Three-Dimensional ,Female ,Radiology ,Cardiology and Cardiovascular Medicine ,business ,Artery - Abstract
Aims Coronary artery fistulae represent one of the most challenging anatomical defects to define accurately. We aimed to investigate the additional benefit conferred by volume rendering of tomographic images and 3D printing for diagnosis and interventional planning. Methods and results Four cases of coronary fistulae were considered for transcatheter closure. Multidetector computed tomography (three cases) or cardiac magnetic resonance (one case) images were acquired and segmented using Mimics software. Each case was reviewed after incremental consideration of diagnostic resources: two cardiologists reported source and volume-rendered images; device closure was discussed by the interventional cardiology team. All diagnoses and planned management were reviewed after inspection of a 3D model. Using source images alone, both cardiologists correctly described the course and drainage in two out of four cases. Aided by volume rendering, this improved to three out of four cases. Inspection of the 3D printed model prompted the planned interventional approach and device sizing to be altered in two out of four cases. In one out of four cases, the intervention was abandoned after inspection of the 3D printed model. Conclusions Diagnosis and management of patients with coronary artery fistulae rely on detailed image analyses. 3D models add value when determining the feasibility of, and the approach to intervention in these cases.
- Published
- 2017
26. Interventional Correction of Sinus Venosus Atrial Septal Defect and Partial Anomalous Pulmonary Venous Drainage: Procedural Planning Using 3D Printed Models
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Mari Nieves, Velasco Forte, Nick, Byrne, Israel, Valverde, Gorka, Gomez Ciriza, Antony, Hermuzi, Pimpak, Prachasilchai, Gur, Mainzer, Kuberan, Pushparajah, Markus, Henningsson, Tarique, Hussain, Shakeel, Qureshi, and Eric, Rosenthal
- Subjects
Models, Anatomic ,Patient-Specific Modeling ,Cardiac Catheterization ,Models, Cardiovascular ,Coronary Angiography ,Prosthesis Design ,Magnetic Resonance Imaging ,Heart Septal Defects, Atrial ,Echocardiography, Doppler, Color ,Treatment Outcome ,Pulmonary Veins ,Printing, Three-Dimensional ,Humans ,Stents ,Echocardiography, Transesophageal - Published
- 2017
27. Three-dimensional printing in robot-assisted radical prostatectomy - an Idea, Development, Exploration, Assessment, Long-term follow-up (IDEAL) Phase 2a study
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Clare Allen, Ashish Chandra, Veeru Kasivisvanathan, Hugo Lynch, Hashim U. Ahmed, Nick Byrne, Prokar Dasgupta, O. Elhage, Nicholas Raison, Pankaj Chandak, Giles Rottenberg, and Wellcome Trust
- Subjects
Male ,Models, Anatomic ,Engineering drawing ,Long term follow up ,Urology ,medicine.medical_treatment ,030232 urology & nephrology ,Pilot Projects ,Phase (combat) ,03 medical and health sciences ,0302 clinical medicine ,Robotic Surgical Procedures ,Humans ,Medicine ,Prospective Studies ,Aged ,Prostatectomy ,Science & Technology ,Ideal (set theory) ,business.industry ,Prostate ,Follow up studies ,Prostatic Neoplasms ,1103 Clinical Sciences ,Urology & Nephrology ,Middle Aged ,Magnetic Resonance Imaging ,030220 oncology & carcinogenesis ,Three dimensional printing ,Printing, Three-Dimensional ,Robot ,Prostate surgery ,business ,Life Sciences & Biomedicine ,Follow-Up Studies - Published
- 2018
- Full Text
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28. Multilingual learners in London mainstream schools: Policy, practice and professional development
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Dina Mehmedbegovic, Peter Skrandies, Nick Byrne, Philip Harding-Esch, Dina Mehmedbegovic, Peter Skrandies, Nick Byrne, and Philip Harding-Esch
- Abstract
This paper is a summary of a report section produced for LUCIDE (Languages in Urban Contexts: Integration and Diversity in Europe) project and network, funded by the EU Commission Lifelong learning programme 2011–2014, based on the collected primary and secondary data. This summary focuses on multilingualism in mainstream education. The full report addresses multilingualism in several other areas: public, economic, private sphere and urban spaces. It is available on: www.urbanlanguages.eu. Considering the size, population and complexity of London, our specific focus is on one local authority (out of an existing 33): the City of Westminster, geographically the heart of this metropolis. Westminster is in many ways representative of London language trends. It shows some of the most prominent features of multilingualism in London: an extraordinary linguistic variety with a wide distribution of languages, where no one language is dominant. The aim of this research is to gain insights into experiences of multilingual learners in London in regards to: education practice and relevant policies. Primary data was collected by a team of four researchers who consulted 82 professionals relevant to the identified spheres of practice. The methods used were interviews and questionnaires. The sampling was purposive in terms of relevant professions: education, social work, public services, police and finance and business sector professionals. The theoretical framework used to develop our approach is the typology of language use, which distinguishes: symbolic, pragmatic and authoritative language use., Ovaj je članak sažetak izvješća koje je napravljeno za LUCIDE (Languages in Urban Contexts: Integration and Diversity in Europe; Jezici u urbanim kontekstima: integracija i raznolikost u Europi) projekt i mrežu. Projekt je financiran iz Programa Europske unije za cjeloživotno učenje 2011.-2014., temeljem prikupljenih primarnih i sekundarnih podataka. Ovaj se sažetak fokusira na višejezičnost u osnovnoškolskom obrazovanju. Cjelovito izvješće govori o višejezičnosti u nekoliko ostalih područja: javnoj, gospodarskoj, privatnoj sferi te urbanim prostorima (dostupno na: www.urbanlanguages.eu) S obzirom na veličinu, stanovništvo i složenost Londona u radu je posebna pažnja usmjerena na lokalnu jedinicu (od postojeće 33): grad Westminster koji je zemljopisno srce ove metropole. Westminster je na mnogo načina predstavnik jezičnih trendova u Londonu. To pokazuje neke od najistaknutijih obilježja višejezičnosti Londona, kao što je izvanredna lingvistička raznolikost sa širokom rasprostranjenošću jezika, pri čemu niti jedan jezik nije dominantan. Cilj ovog istraživanja je stjecanje uvida u iskustva višejezičnih učenika u Londonu s obzirom na obrazovnu praksu i relevantne politike. Primarne podatke prikupio je tim od četiri istraživača koji su konzultirali 82 stručnjaka relevantna za identificirana područja prakse. Korištene su metode intervjuiranja i anketiranja. Uzorkovanje je svrhovito obuhvaćalo relevantne struke: obrazovanje, socijalni rad, javne službe, policiju i financije te stručnjake iz poslovnog sektora. Teorijski okvir za razvoj ovog pristupa je tipologija uporabe jezika koja razlikuje: simboličku, pragmatičnu i autoritativnu primjenu jezika.
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- 2018
29. Three-dimensional printed models for surgical planning of complex congenital heart defects: an international multicentre study
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Gerald F. Greil, Carlos Merino, Reza Razavi, Enrique Ruiz, Massimiliano Cantinotti, Gorka Gomez-Ciriza, Sergio Uribe, Antonio González-Calle, John M. Simpson, Amir Reza Hosseinpour, Andrew J. Parry, Owen Miller, Tomás Gómez-Cía, Israel Valverde, José Antonio Rivas-González, Ignacio Zabala, Begoña Manso, Ana Mendez, Antonio Ordóñez, Lamia Ait-Ali, Pastora Gallego, Tarique Hussain, Nick Byrne, Arno A.W. Roest, David Anderson, Cristina Suárez-Mejías, Maria N. Velasco-Forte, Freddy Prada, Issam El-Rassi, Mark G. Hazekamp, and Nancy Poirier
- Subjects
Pulmonary and Respiratory Medicine ,Adult ,Heart Defects, Congenital ,Male ,Models, Anatomic ,medicine.medical_specialty ,Adolescent ,Echocardiography, Three-Dimensional ,Magnetic Resonance Imaging, Cine ,Computed tomography ,030204 cardiovascular system & hematology ,Surgical planning ,030218 nuclear medicine & medical imaging ,Imaging ,03 medical and health sciences ,Young Adult ,0302 clinical medicine ,Imaging, Three-Dimensional ,medicine ,Humans ,Prospective Studies ,Complex congenital heart disease ,Prospective cohort study ,Child ,Surgical approach ,Cross-Over Studies ,medicine.diagnostic_test ,business.industry ,Infant, Newborn ,Infant ,Reproducibility of Results ,Magnetic resonance imaging ,Heart ,General Medicine ,Satisfaction questionnaire ,3D printing ,Medical computer-aided design ,Surgical correction ,Surgery ,Congenital heart defects ,Child, Preschool ,Preoperative Period ,Printing, Three-Dimensional ,Female ,Radiology ,Cardiology and Cardiovascular Medicine ,business ,Tomography, X-Ray Computed - Abstract
OBJECTIVES: To evaluate the impact of 3D printed models (3D models) on surgical planning in complex congenital heart disease (CHD). METHODS: A prospective case-crossover study involving 10 international centres and 40 patients with complex CHD (median age 3 years, range 1 month-34 years) was conducted. Magnetic resonance imaging and computed tomography were used to acquire and segment the 3D cardiovascular anatomy. Models were fabricated by fused deposition modelling of polyurethane filament, and dimensions were compared with medical images. Decisions after the evaluation of routine clinical images were compared with those after inspection of the 3D model and intraoperative findings. Subjective satisfaction questionnaire was provided. RESULTS: 3D models accurately replicate anatomy with a mean bias of -0.27 ± 0.73 mm. Ninety-six percent of the surgeons agree or strongly agree that 3D models provided better understanding of CHD morphology and improved surgical planning. 3D models changed the surgical decision in 19 of the 40 cases. Consideration of a 3D model refined the planned biventricular repair, achieving an improved surgical correction in 8 cases. In 4 cases initially considered for conservative management or univentricular palliation, inspection of the 3D model enabled successful biventricular repair. CONCLUSIONS: 3D models are accurate replicas of the cardiovascular anatomy and improve the understanding of complex CHD. 3D models did not change the surgical decision in most of the cases (21 of 40 cases, 52.5% cases). However, in 19 of the 40 selected complex cases, 3D model helped redefining the surgical approach.
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- 2017
30. Foreword
- Author
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Nick Byrne
- Published
- 2016
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31. Introduction of novel 3D-printed superficial applicators for high-dose-rate skin brachytherapy
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Emma-Louise Jones, Sarah Aldridge, C. Thomas, Victoria Newton, Anna Tonino Baldion, Tom Burrows, and Nick Byrne
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Organs at Risk ,3d printed ,medicine.medical_specialty ,Skin Neoplasms ,medicine.medical_treatment ,Brachytherapy ,Patient pathway ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,0302 clinical medicine ,Medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,Radiation treatment planning ,business.industry ,Radiotherapy Planning, Computer-Assisted ,Radiotherapy Dosage ,Equipment Design ,Surgery ,High surface ,Catheter ,Oncology ,030220 oncology & carcinogenesis ,Printing, Three-Dimensional ,business ,Catheter placement ,Dose rate ,Biomedical engineering - Abstract
Purpose Custom-made surface mold applicators often allow more flexibility when carrying out skin brachytherapy, particularly for small treatment areas with high surface obliquity. They can, however, be difficult to manufacture, particularly if there is a lack of experience in superficial high-dose-rate brachytherapy techniques or with limited resources. Methods and Materials We present a novel method of manufacturing superficial brachytherapy applicators utilizing three-dimensional (3D)–printing techniques. We describe the treatment planning process and the process of applicator manufacture. Results The treatment planning process, with the introduction of a pre-plan, allows for an “ideal” catheter arrangement within an applicator to be determined, exploiting varying catheter orientations, heights, and curvatures if required. The pre-plan arrangement is then 3D printed to the exact specifications of the pre-plan applicator design. This results in improved target volume coverage and improved sparing of organs at risk. Conclusions Using a pre-plan technique for ideal catheter placement followed by automated 3D-printed applicator manufacture has greatly improved the entire process of superficial high-dose-rate brachytherapy treatment. We are able to design and manufacture flexible, well-fitting, superior quality applicators resulting in a more efficient and improved patient pathway and patient experience.
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- 2016
32. A systematic review of image segmentation methodology, used in the additive manufacture of patient-specific 3D printed models of the cardiovascular system
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Nick Byrne, Israel Valverde, Animesh Tandon, Tarique Hussain, and M Velasco Forte
- Subjects
3d printed ,lcsh:Diseases of the circulatory (Cardiovascular) system ,cardiovascular surgery ,business.industry ,Diagnostic test ,3D printing ,Image segmentation ,030204 cardiovascular system & hematology ,Patient specific ,computer.software_genre ,Computed tomography and magnetic resonance imaging ,diagnostic testing ,030218 nuclear medicine & medical imaging ,paediatric and congenital heart disease ,03 medical and health sciences ,0302 clinical medicine ,lcsh:RC666-701 ,Medicine ,Data mining ,business ,computer ,image segmentation ,Research Paper - Abstract
Background Shortcomings in existing methods of image segmentation preclude the widespread adoption of patient-specific 3D printing as a routine decision-making tool in the care of those with congenital heart disease. We sought to determine the range of cardiovascular segmentation methods and how long each of these methods takes. Methods A systematic review of literature was undertaken. Medical imaging modality, segmentation methods, segmentation time, segmentation descriptive quality (SDQ) and segmentation software were recorded. Results Totally 136 studies met the inclusion criteria (1 clinical trial; 80 journal articles; 55 conference, technical and case reports). The most frequently used image segmentation methods were brightness thresholding, region growing and manual editing, as supported by the most popular piece of proprietary software: Mimics (Materialise NV, Leuven, Belgium, 1992–2015). The use of bespoke software developed by individual authors was not uncommon. SDQ indicated that reporting of image segmentation methods was generally poor with only one in three accounts providing sufficient detail for their procedure to be reproduced. Conclusions and implication of key findings Predominantly anecdotal and case reporting precluded rigorous assessment of risk of bias and strength of evidence. This review finds a reliance on manual and semi-automated segmentation methods which demand a high level of expertise and a significant time commitment on the part of the operator. In light of the findings, we have made recommendations regarding reporting of 3D printing studies. We anticipate that these findings will encourage the development of advanced image segmentation methods.
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- 2016
33. Steps towards automated image segmentation as part of a 3D printing pipeline in congenital heart disease
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Mari-Nieves Velasco Forte, Srinivas Ananth Narayan, Israel Valverde, Nick Byrne, Gerald F. Greil, and Tarique Hussain
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Medicine(all) ,medicine.medical_specialty ,Radiological and Ultrasound Technology ,Heart disease ,business.industry ,3D printing ,Image segmentation ,medicine.disease ,Pipeline (software) ,Poster Presentation ,medicine ,Radiology, Nuclear Medicine and imaging ,Computer vision ,Radiology ,Artificial intelligence ,Cardiology and Cardiovascular Medicine ,business - Published
- 2016
34. Skin HDR Brachytherapy Treatment Using a Mould Made with a 3D Printer
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Teresa Guerrero-Urbano, Emma-Louise Jones, Victoria Newton, Sarah Aldridge, Stephen Morris, Anna Tonino, C. Thomas, and Nick Byrne
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medicine.medical_specialty ,Oncology ,business.industry ,medicine.medical_treatment ,Brachytherapy ,Medicine ,Radiology, Nuclear Medicine and imaging ,Medical physics ,business ,3d printer - Published
- 2016
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35. Classification of abdominal vascular anomalies and use of 3D printing to support complex renal transplantation in children
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Nick Byrne, Jelena Stojanovic, Stephen D. Marks, Andrew Coleman, Nizam Mamode, Nicos Kessaris, Pankaj Chandak, and Victora Newton
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3d printed ,Aorta ,Surgical team ,medicine.medical_specialty ,Preoperative planning ,Surgical approach ,business.industry ,Renal function ,General Medicine ,Anastomosis ,Surgery ,Transplantation ,03 medical and health sciences ,0302 clinical medicine ,030220 oncology & carcinogenesis ,medicine.artery ,Medicine ,030211 gastroenterology & hepatology ,business - Abstract
Background Transplantation is the treatment of choice for paediatric renal recipients. However, there are increased challenges in small ( Methods We describe our management in five paediatric renal recipients with vascular anomalies (median age 7 years [IQR 4·5–13·0], median weight 18 kg [IQR 14·5–29·0]). We assessed the utility of 3D printing as a planning tool in four children with complex abnormalities (one retrospective case, three prospective cases) for whom implantation was uncertain as judged by conventional imaging. Surgically relevant donor and recipient anatomy was segmented from MRI or CT data (Mimics Medical v18.0, Materialise, Leuven, Belgium). The segmentation geometry derived from the extracted anatomical data was then exported in STL file format and physically fabricated with multimaterial, polyjet 3D printing technology (Objet500 Connex1, Objet-Stratasys). We assessed the value of models using questionnaires and geometric validation studies. Findings Four (80%) of five children survived after one death from sepsis (with a functioning graft). At the latest median follow-up of 19 months (IQR 10·5–83·0) renal allograft survival was 100% (death censored) with a median estimated glomerular filtration rate of 55 mL/min per 1·73 m 2 (IQR 45–66). We have previously classified these vascular anomolies on the basis of aortic and IVC patency (I=aorta patent, II=infrarenal segment occluded, III=suprarenal segment occluded, IV=all aorta occluded) and similarly for IVC patency (A–D). By independent questionnaire, all prospective 3D printed models were considered useful for preoperative planning, and thereby facilitated transplantation. In our retrospective proof of concept, Bland–Altman analysis found that the mean difference in vascular diameter between the printed model and segmentation geometry was −0·1 mm (95% CI −0·7 to 0·5), which was insignificant when compared with the measurement uncertainty (±0·4 mm) and the limits of surgical precision. All models showed geometrical consistency with preprinting designs and intraoperative anatomical correlation within surgical acceptance for crucial decision making. Interpretation Vascular anomalies do not necessarily preclude transplantation, and a classification system could guide management. Our feasibility study of patient-specific 3D printing suggests that cases classified as sufficiently complex can benefit from this technology. Patient-specific models provide the surgical team with the full, 3D, accessible, haptic, and spatial appreciation of anatomy that is crucial in surgical decision making and planning. This technology can inform the selection of suitable anastamosis sites in the presence of anomalies and the best surgical approach for implantation of an adult-sized kidney into a small child. Funding None.
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- 2017
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36. Automatic scar segmentation in dual inversion recovery images is more consistent with manual outlining than in conventional inversion recovery images
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Sarah A Peel, René M. Botnar, Tarique Hussain, Nick Byrne, and Stephen F. Keevil
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Medicine(all) ,Radiological and Ultrasound Technology ,business.industry ,Pattern recognition ,Inversion recovery ,computer.software_genre ,Medicine ,Late gadolinium enhancement ,Oral Presentation ,Radiology, Nuclear Medicine and imaging ,Segmentation ,Data mining ,Artificial intelligence ,Cardiology and Cardiovascular Medicine ,business ,computer - Abstract
Background The dual inversion recovery (dual IR) pulse sequence has recently been shown to improve blood suppression and infarct delineation in late gadolinium enhancement (LGE) images of myocardial infarction. This resulted in significantly lower inter-observer variability in manual outlining of scar and higher expert confidence in scar detection and transmurality when compared with conventional inversion recovery (IR) images. Computer algorithms have been shown to improve the accuracy of scar segmentation within IR images. We sought to develop and optimise a set of computer algorithms to quantify scar in both IR and dual IR images. Methods
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- 2015
37. Plasma from patients with seronegative myasthenia gravis inhibit nAChR responses in the TE671/RD cell line
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Nick Byrne, Angela Vincent, John Newsom-Davis, and Richard Barrett-Jolley
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Adult ,Male ,medicine.medical_specialty ,Adolescent ,Physiology ,Clinical Biochemistry ,Polyradiculoneuropathy ,Receptors, Nicotinic ,Antibodies ,Sodium Channels ,chemistry.chemical_compound ,Physiology (medical) ,Internal medicine ,Myasthenia Gravis ,medicine ,Tumor Cells, Cultured ,Humans ,Receptors, Cholinergic ,Receptor ,Acetylcholine receptor ,biology ,Chemistry ,Sodium channel ,Muscle weakness ,Middle Aged ,medicine.disease ,Myasthenia gravis ,EGTA ,Nicotinic acetylcholine receptor ,Endocrinology ,biology.protein ,Female ,medicine.symptom ,Antibody ,Nervous System Diseases ,Ion Channel Gating - Abstract
Myasthenia gravis (MG) is an autoimmune disorder in which anti-acetylcholine receptor (AChR) antibodies cause muscle weakness. In 10-15% of MG patients anti-AChR antibodies are undetectable (seronegative MG, SMG), though clinical and experimental evidence points to causative circulating factors. Using whole-cell patch-clamp techniques, we investigated the effects of heat-inactivated plasma from SMG patients (n = 7) on voltage-gated sodium [INa(V)] and ACh-induced nicotinic AChR (nAChR) currents in the human rhabdomyosarcoma cell line TE671/RD, comparing the results to those obtained with plasma from healthy individuals (HC, n = 6), patients with Guillain-Barré syndrome (GBS, n = 3) or those with other neurological diseases (OND, n = 3). None of the plasma samples inhibited INa(V). nAChR currents were rapidly (1 min) and significantly (P0.01) reduced by a 1:10 dilution of plasma from SMG patients compared with plasma from healthy controls and were not restored by washing. The inhibition appeared in some cases to be calcium dependent since for one of three plasmas it was prevented by 10 mM EGTA in the patch pipette. Currents were also reduced by two of three plasmas obtained from GBS patients at 1:3 dilution, but not by the three plasmas from patients with ONDs. The rapid action of plasma from SMG patients argues against an antibody-induced reduction in nAChR numbers; its calcium dependence in one case suggests action by a second messenger that might involve nAChR phosphorylation.
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- 1994
38. Anything to declare? Language portfolios on degree and institution-wide language programmes
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Nick Byrne
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Linguistics and Language ,Institution (computer science) ,Mathematics education ,Sociology ,Degree (music) ,Language and Linguistics ,Linguistics ,Education - Published
- 2002
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39. A Topological Loss Function for Deep-Learning based Image Segmentation using Persistent Homology
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Julia A. Schnabel, James R. Clough, Andrew P. King, Nick Byrne, Ilkay Oksuz, and Veronika A. Zimmer
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FOS: Computer and information sciences ,Computer science ,Computer Vision and Pattern Recognition (cs.CV) ,Computer Science - Computer Vision and Pattern Recognition ,ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION ,02 engineering and technology ,Topology ,Deep Learning ,Artificial Intelligence ,0202 electrical engineering, electronic engineering, information engineering ,FOS: Electrical engineering, electronic engineering, information engineering ,Image Processing, Computer-Assisted ,Segmentation ,Persistent homology ,Artificial neural network ,business.industry ,Applied Mathematics ,Deep learning ,Image and Video Processing (eess.IV) ,Image segmentation ,Electrical Engineering and Systems Science - Image and Video Processing ,Magnetic Resonance Imaging ,Computational Theory and Mathematics ,Embedding ,020201 artificial intelligence & image processing ,Computer Vision and Pattern Recognition ,Artificial intelligence ,Neural Networks, Computer ,business ,Software ,MNIST database ,Algorithms - Abstract
We introduce a method for training neural networks to perform image or volume segmentation in which prior knowledge about the topology of the segmented object can be explicitly provided and then incorporated into the training process. By using the differentiable properties of persistent homology, a concept used in topological data analysis, we can specify the desired topology of segmented objects in terms of their Betti numbers and then drive the proposed segmentations to contain the specified topological features. Importantly this process does not require any ground-truth labels, just prior knowledge of the topology of the structure being segmented. We demonstrate our approach in three experiments. Firstly we create a synthetic task in which handwritten MNIST digits are de-noised, and show that using this kind of topological prior knowledge in the training of the network significantly improves the quality of the de-noised digits. Secondly we perform an experiment in which the task is segmenting the myocardium of the left ventricle from cardiac magnetic resonance images. We show that the incorporation of the prior knowledge of the topology of this anatomy improves the resulting segmentations in terms of both the topological accuracy and the Dice coefficient. Thirdly, we extend the method to 3D volumes and demonstrate its performance on the task of segmenting the placenta from ultrasound data, again showing that incorporating topological priors improves performance on this challenging task. We find that embedding explicit prior knowledge in neural network segmentation tasks is most beneficial when the segmentation task is especially challenging and that it can be used in either a semi-supervised or post-processing context to extract a useful training gradient from images without pixelwise labels., Comment: IEEE Transactions on Pattern Analysis and Machine Intelligence, 2020
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