23 results on '"Ngowi EE"'
Search Results
2. Mitochondria-Targeting Fluorescent Probes for Hydrogen Sulfide Detection and Imaging.
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Zhu YW, Ngowi EE, Tang AQ, Chu T, Wang Y, Shabani ZI, Luchemba LP, Jiang T, Ji XY, and Wu DD
- Abstract
Hydrogen sulfide (H
2 S) is a potent redox-active signaling molecule commonly dysregulated in disease states. The production of H2 S and its involvement in various pathological conditions associated with mitochondrial dysfunction has been extensively documented. During stress, cystathionine gamma-lyase and cystathionine beta-synthase enzymes residing in cytosol are copiously translocated into the mitochondria to boost H2 S production, confirming its pivotal role in mitochondrial activities. However, report on H2 S levels in tissue, cells and organelles are lacking, mainly due to the absence of precise and accurate detection tools. Thus, there is a need to determine and monitor the levels of H2 S in this important organelle. Recently, fluorescent probes have been identified as efficient tools for detecting and monitoring the levels of various biomolecules of medical importance including biological thiols. The development of fluorescent probes is a multi-pronged approach involving coupling of fluorophores with responsive sites. The use of fluorescent probes for monitoring mitochondrial H2 S levels has recently received more attention, resulting in numerous publications depicting their synthesis, mechanism of action, application, and potential challenges. Fluorescent probes offer precise and timely results, high sensitivity, and selectivity, low biotoxicity, and minimal background interference. In this review, we aim to report designs of such probes, reaction mechanisms and their application in detecting mitochondrial H2 S levels. Fluorescent probes can help uncover physio/pathological levels of H2 S in essential organelles, its interactions with various biomarkers and associated consequences in biological systems., Competing Interests: Declaration of Competing Interest The authors declare that they have no competing interests., (Copyright © 2024. Published by Elsevier B.V.)- Published
- 2024
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3. LncRNA Snhg3 aggravates hepatic steatosis via PPARγ signaling.
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Xie X, Gao M, Zhao W, Li C, Zhang W, Yang J, Zhang Y, Chen E, Guo Y, Guo Z, Zhang M, Ngowi EE, Wang H, Wang X, Zhu Y, Wang Y, Li X, Yao H, Yan L, Fang F, Li M, Qiao A, and Liu X
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- Animals, Male, Mice, Fatty Liver metabolism, Fatty Liver genetics, Hepatocytes metabolism, Liver metabolism, Liver pathology, Mice, Inbred C57BL, Diet, High-Fat adverse effects, PPAR gamma metabolism, PPAR gamma genetics, RNA, Long Noncoding metabolism, RNA, Long Noncoding genetics, Signal Transduction
- Abstract
LncRNAs are involved in modulating the individual risk and the severity of progression in metabolic dysfunction-associated fatty liver disease (MASLD), but their precise roles remain largely unknown. This study aimed to investigate the role of lncRNA Snhg3 in the development and progression of MASLD, along with the underlying mechanisms. The result showed that Snhg3 was significantly downregulated in the liver of high-fat diet-induced obesity (DIO) mice. Notably, palmitic acid promoted the expression of Snhg3 and overexpression of Snhg3 increased lipid accumulation in primary hepatocytes. Furthermore, hepatocyte-specific Snhg3 deficiency decreased body and liver weight, alleviated hepatic steatosis and promoted hepatic fatty acid metabolism in DIO mice, whereas overexpression induced the opposite effect. Mechanistically, Snhg3 promoted the expression, stability and nuclear localization of SND1 protein via interacting with SND1, thereby inducing K63-linked ubiquitination modification of SND1. Moreover, Snhg3 decreased the H3K27me3 level and induced SND1-mediated chromatin loose remodeling, thus reducing H3K27me3 enrichment at the Pparg promoter and enhancing PPARγ expression. The administration of PPARγ antagonist T0070907 improved Snhg3 -aggravated hepatic steatosis. Our study revealed a new signaling pathway, Snhg3 /SND1/H3K27me3/PPARγ, responsible for mice MASLD and indicates that lncRNA-mediated epigenetic modification has a crucial role in the pathology of MASLD., Competing Interests: XX, MG, WZ, CL, WZ, JY, YZ, EC, YG, ZG, MZ, EN, HW, XW, YZ, YW, XL, HY, LY, FF, ML, AQ, XL No competing interests declared, (© 2024, Xie et al.)
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- 2024
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4. LncRNA-Snhg3 regulates mouse hepatic glycogenesis under normal chow diet.
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Xie X, Gao M, Wang H, Zhang M, Zhao W, Li C, Zhang W, Yang J, Zhang Y, Chen E, Guo Y, Guo Z, Ngowi EE, Wang X, Zhu Y, Wang Y, Li X, Yao H, Yan L, Fang F, Li M, Qiao A, and Liu X
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- Animals, Mice, Mice, Knockout, Glucose metabolism, Male, Hepatocytes metabolism, Mice, Inbred C57BL, Liver Glycogen metabolism, RNA, Long Noncoding genetics, RNA, Long Noncoding metabolism, Liver metabolism
- Abstract
Long noncoding RNAs (lncRNAs) are strongly associated with glucose homeostasis, but their roles remain largely unknown. In this study, the potential role of lncRNA-Snhg3 in glucose metabolism was evaluated both in vitro and in vivo. Here, we found a positive relationship between Snhg3 and hepatic glycogenesis. Glucose tolerance improved in hepatocyte-specific Snhg3 knock-in (Snhg3-HKI) mice, while it worsened in hepatocyte-specific Snhg3 knockout (Snhg3-HKO) mice. Furthermore, hepatic glycogenesis had shown remarkable increase in Snhg3-HKI mice and reduction in Snhg3-HKO mice, respectively. Mechanistically, Snhg3 increased mRNA and protein expression levels of PPP1R3B through inducing chromatin remodeling and promoting the phosphorylation of protein kinase B. Collectively, these results suggested that lncRNA-Snhg3 plays a critical role in hepatic glycogenesis., (© 2024 Federation of American Societies for Experimental Biology.)
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- 2024
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5. Editorial: Advances in novel drugs and targets for hepatic and gastrointestinal diseases.
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Ngowi EE, Gao Y, Yang X, and Qiao A
- Abstract
Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
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- 2024
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6. Exosomes: New Insights into the Pathogenesis of Metabolic Syndrome.
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Wang N, Li J, Hu Z, Ngowi EE, Yan B, and Qiao A
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Exosomes are a subtype of extracellular vesicles (EVs) with a diameter of 30~150 nm (averaging ~100 nm) that are primarily produced through the endosomal pathway, and carry various components such as lipids, proteins, RNA, and other small molecular substances. Exosomes can mediate intercellular communication through the bioactive substances they carry, thus participating in different physiological activities. Metabolic syndrome (MS) is a disease caused by disturbances in the body's metabolism, mainly including insulin resistance (IR), diabetes, obesity, non-alcoholic fatty liver disease (NAFLD), hyperlipidemia, and atherosclerosis (AS). Recent studies have shown that exosomes are closely related to the occurrence and development of MS. Exosomes can act as messengers to mediate signaling transductions between metabolic cells in the organism and play a bidirectional regulatory role in the MS process. This paper mainly reviews the components, biogenesis, biological functions and potential applications of exosomes, and exosomes involved in the pathogenesis of MS as well as their clinical significance in MS diagnosis.
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- 2023
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7. Nanotechnology prospects in brain therapeutics concerning gene-targeting and nose-to-brain administration.
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Wu DD, Salah YA, Ngowi EE, Zhang YX, Khattak S, Khan NH, Wang Y, Li T, Guo ZH, Wang YM, and Ji XY
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Neurological diseases are one of the most pressing issues in modern times worldwide. It thus possesses explicit attention from researchers and medical health providers to guard public health against such an expanding threat. Various treatment modalities have been developed in a remarkably short time but, unfortunately, have yet to lead to the wished-for efficacy or the sought-after clinical improvement. The main hurdle in delivering therapeutics to the brain has always been the blood-brain barrier which still represents an elusive area with lots of mysteries yet to be solved. Meanwhile, nanotechnology has emerged as an optimistic platform that is potentially holding the answer to many of our questions on how to deliver drugs and treat CNS disorders using novel technologies rather than the unsatisfying conventional old methods. Nanocarriers can be engineered in a way that is capable of delivering a certain therapeutic cargo to a specific target tissue. Adding to this mind-blowing nanotechnology, the revolutionizing gene-altering biologics can have the best of both worlds, and pave the way for the long-awaited cure to many diseases, among those diseases thus far are Alzheimer's disease (AD), brain tumors (glioma and glioblastoma), Down syndrome, stroke, and even cases with HIV. The review herein collects the studies that tested the mixture of both sciences, nanotechnology, and epigenetics, in the context of brain therapeutics using three main categories of gene-altering molecules (siRNA, miRNA, and CRISPR) with a special focus on the advancements regarding the new favorite, intranasal route of administration., Competing Interests: The authors declare no conflict of interest., (© 2023 The Authors.)
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- 2023
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8. Cystathionine γ-lyase mediates cell proliferation, migration, and invasion of nasopharyngeal carcinoma.
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Zhang Q, Gao Y, Zhang Y, Jing M, Wang D, Wang Y, Khattak S, Qi H, Cai C, Zhang J, Ngowi EE, Khan NH, Li T, Ji A, Jiang Q, Ji X, Li Y, and Wu D
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- Humans, Apoptosis, Cell Line, Tumor, Cell Proliferation, Nasopharyngeal Carcinoma metabolism, Phosphatidylinositol 3-Kinase, Phosphatidylinositol 3-Kinases metabolism, Proto-Oncogene Proteins c-akt metabolism, Reactive Oxygen Species pharmacology, TOR Serine-Threonine Kinases metabolism, Animals, Cystathionine gamma-Lyase genetics, Cystathionine gamma-Lyase metabolism, Cystathionine gamma-Lyase pharmacology, Nasopharyngeal Neoplasms metabolism
- Abstract
Nasopharyngeal carcinoma (NPC) is an epithelia-derived malignancy with a distinctive geographic distribution. Cystathionine γ-lyase (CSE) is involved in cancer development and progression. Nevertheless, the role of CSE in the growth of NPC is unknown. In this study, we found that CSE levels in human NPC cells were higher than those in normal nasopharyngeal cells. CSE overexpression enhanced the proliferative, migrative, and invasive abilities of NPC cells and CSE downregulation exerted reverse effects. Overexpression of CSE decreased the expressions of cytochrome C, cleaved caspase (cas)-3, cleaved cas-9, and cleaved poly-ADP-ribose polymerase, whereas CSE knockdown exhibited reverse effects. CSE overexpression decreased reactive oxygen species (ROS) levels and the expressions of phospho (p)-extracellular signal-regulated protein kinase 1/2, p-c-Jun N-terminal kinase, and p-p38, but promoted the expressions of p-phosphatidylinositol 3-kinase (PI3K), p-AKT, and p-mammalian target of rapamycin (mTOR), whereas CSE knockdown showed oppose effects. In addition, CSE overexpression promoted NPC xenograft tumor growth and CSE knockdown decreased tumor growth by modulating proliferation, angiogenesis, cell cycle, and apoptosis. Furthermore, DL-propargylglycine (an inhibitor of CSE) dose-dependently inhibited NPC cell growth via ROS-mediated mitogen-activated protein kinase (MAPK) and PI3K/AKT/mTOR pathways without significant toxicity. In conclusion, CSE could regulate the growth of NPC cells through ROS-mediated MAPK and PI3K/AKT/mTOR cascades. CSE might be a novel tumor marker for the diagnosis and prognosis of NPC. Novel donors/drugs that inhibit the expression/activity of CSE can be developed in the treatment of NPC., (© 2022. The Author(s), under exclusive licence to Springer Nature Limited.)
- Published
- 2022
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9. Pharmacological Inhibition of Endogenous Hydrogen Sulfide Attenuates Breast Cancer Progression.
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Khan NH, Wang D, Wang W, Shahid M, Khattak S, Ngowi EE, Sarfraz M, Ji XY, Zhang CY, and Wu DD
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- Animals, Cystathionine, Cystathionine beta-Synthase metabolism, Cystathionine gamma-Lyase metabolism, Female, Humans, Mice, Mice, Nude, Molecular Docking Simulation, Phosphatidylinositol 3-Kinases, Proto-Oncogene Proteins c-akt, Reproducibility of Results, TOR Serine-Threonine Kinases, Breast Neoplasms drug therapy, Hydrogen Sulfide metabolism, Hydrogen Sulfide pharmacology
- Abstract
Hydrogen sulfide (H
2 S), a gaseous signaling molecule, is associated with the development of various malignancies via modulating various cellular signaling cascades. Published research has established the fact that inhibition of endogenous H2 S production or exposure of H2 S donors is an effective approach against cancer progression. However, the effect of pharmacological inhibition of endogenous H2 S-producing enzymes (cystathionine-γ-lyase (CSE), cystathionine-β-synthase (CBS), and 3-mercaptopyruvate sulfurtransferase (3-MPST)) on the growth of breast cancer (BC) remains unknown. In the present study, DL-propargylglycine (PAG, inhibitor of CSE), aminooxyacetic acid (AOAA, inhibitor of CBS), and L-aspartic acid (L-Asp, inhibitor of 3-MPST) were used to determine the role of endogenous H2 S in the growth of BC by in vitro and in vivo experiments. An in silico study was also performed to confirm the results. Corresponding to each enzyme in separate groups, we treated BC cells (MCF-7 and MDA-MB-231) with 10 mM of PAG, AOAA, and L-Asp for 24 h. Findings reveal that the combined dose (PAG + AOAA + L-Asp) group showed exclusive inhibitory effects on BC cells' viability, proliferation, migration, and invasion compared to the control group. Further, treated cells exhibited increased apoptosis and a reduced level of phospho (p)-extracellular signal-regulated protein kinases such as p-AKT, p-PI3K, and p-mTOR. Moreover, the combined group exhibited potent inhibitory effects on the growth of BC xenograft tumors in nude mice, without obvious toxicity. The molecular docking results were consistent with the wet lab experiments and enhanced the reliability of the drugs. In conclusion, our results demonstrate that the inhibition of endogenous H2 S production can significantly inhibit the growth of human breast cancer cells via the AKT/PI3K/mTOR pathway and suggest that endogenous H2 S may act as a promising therapeutic target in human BC cells. Our study also empowers the rationale to design novel H2 S-based anti-tumor drugs to cure BC.- Published
- 2022
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10. Processing body (P-body) and its mediators in cancer.
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Nsengimana B, Khan FA, Ngowi EE, Zhou X, Jin Y, Jia Y, Wei W, and Ji S
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- Humans, Neoplasms genetics, Neoplasms pathology, Processing Bodies genetics, Processing Bodies pathology, RNA, Messenger genetics, RNA, Neoplasm genetics, Neoplasms metabolism, Processing Bodies metabolism, RNA Stability, RNA, Messenger metabolism, RNA, Neoplasm metabolism
- Abstract
In recent years, processing bodies (P-bodies) formed by liquid-liquid phase separation, have attracted growing scientific attention due to their involvement in numerous cellular activities, including the regulation of mRNAs decay or storage. These cytoplasmic dynamic membraneless granules contain mRNA storage and decay components such as deadenylase and decapping factors. In addition, different mRNA metabolic regulators, including m
6 A readers and gene-mediated miRNA-silencing, are also associated with such P-bodies. Cancerous cells may profit from these mRNA decay shredders by up-regulating the expression level of oncogenes and down-regulating tumor suppressor genes. The main challenges of cancer treatment are drug resistance, metastasis, and cancer relapse likely associated with cancer stem cells, heterogeneity, and plasticity features of different tumors. The mRNA metabolic regulators based on P-bodies play a great role in cancer development and progression. The dysregulation of P-bodies mediators affects mRNA metabolism. However, less is known about the relationship between P-bodies mediators and cancerous behavior. The current review summarizes the recent studies on P-bodies mediators, their contribution to tumor development, and their potential in the clinical setting, particularly highlighting the P-bodies as potential drug-carriers such as exosomes to anticancer in the future., (© 2022. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.)- Published
- 2022
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11. Chimeric Peptides/Proteins Encoded by circRNA: An Update on Mechanisms and Functions in Human Cancers.
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Khan FA, Nsengimana B, Khan NH, Song Z, Ngowi EE, Wang Y, Zhang W, and Ji S
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The discovery of circular RNAs and exploration of their biological functions are increasingly attracting attention in cell bio-sciences. Owing to their unique characteristics of being highly conserved, having a relatively longer half-life, and involvement in RNA maturation, transportation, epigenetic regulation, and transcription of genes, it has been accepted that circRNAs play critical roles in the variety of cellular processes. One of the critical importance of these circRNAs is the presence of small open reading frames that enable them to encode peptides/proteins. In particular, these encoded peptides/proteins mediate essential cellular activities such as proliferation, invasion, epithelial-mesenchymal transition, and apoptosis and develop an association with the development and progression of cancers by modulating diverse signaling pathways. In addition, these peptides have potential roles as biomarkers for the prognosis of cancer and are being used as drug targets against tumorigenesis. In the present review, we thoroughly discussed the biogenesis of circRNAs and their functional mechanisms along with a special emphasis on the reported chimeric peptides/proteins encoded by circRNAs. Additionally, this review provides a perspective regarding the opportunities and challenges to the potential use of circRNAs in cancer diagnosis and therapeutic targets in clinics., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Khan, Nsengimana, Khan, Song, Ngowi, Wang, Zhang and Ji.)
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- 2022
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12. Role of Hydrogen Sulfide in Oral Disease.
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Wu DD, Ngowi EE, Zhai YK, Wang YZ, Khan NH, Kombo AF, Khattak S, Li T, and Ji XY
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- Apoptosis, Bacteria isolation & purification, Bacteria metabolism, Cystathionine gamma-Lyase metabolism, Humans, Mouth enzymology, Mouth metabolism, Mouth microbiology, Mouth Diseases metabolism, Mouth Neoplasms metabolism, Mouth Neoplasms pathology, Oxidative Stress, Hydrogen Sulfide metabolism, Mouth Diseases pathology
- Abstract
Oral diseases are among the most common human diseases yet less studied. These diseases affect both the physical, mental, and social health of the patients resulting in poor quality of life. They affect all ages, although severe stages are mostly observed in older individuals. Poor oral hygiene, genetics, and environmental factors contribute enormously to the development and progression of these diseases. Although there are available treatment options for these diseases, the recurrence of the diseases hinders their efficiency. Oral volatile sulfur compounds (VSCs) are highly produced in oral cavity as a result of bacteria activities. Together with bacteria components such as lipopolysaccharides, VSCs participate in the progression of oral diseases by regulating cellular activities and interfering with the immune response. Hydrogen sulfide (H
2 S) is a gaseous neurotransmitter primarily produced endogenously and is involved in the regulation of cellular activities. The gas is also among the VSCs produced by oral bacteria. In numerous diseases, H2 S have been reported to have dual effects depending on the cell, concentration, and donor used. In oral diseases, high production and subsequent utilization of this gas have been reported. Also, this high production is associated with the progression of oral diseases. In this review, we will discuss the production of H2 S in oral cavity, its interaction with cellular activities, and most importantly its role in oral diseases., Competing Interests: The authors declare that they have no competing interests., (Copyright © 2022 Dong-Dong Wu et al.)- Published
- 2022
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13. Impact of the factors shaping gut microbiota on obesity.
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Ngowi EE, Wang YZ, Khattak S, Khan NH, Mahmoud SSM, Helmy YASH, Jiang QY, Li T, Duan SF, Ji XY, and Wu DD
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- Bacteria, Dietary Fiber, Female, Humans, Obesity, Pregnancy, Weight Gain, Gastrointestinal Microbiome
- Abstract
Obesity is considered as a risk factor for chronic health diseases such as heart diseases, cancer and diabetes 2. Reduced physical activities, lifestyle, poor nutritional diet and genetics are among the risk factors associated with the development of obesity. In recent years, several studies have explored the link between the gut microbiome and the progression of diseases including obesity, with the shift in microbiome abundance and composition being the main focus. The alteration of gut microbiome composition affects both nutrients metabolism and specific gene expressions, thereby disturbing body physiology. Specifically, the abundance of fibre-metabolizing microbes is associated with weight loss and that of protein and fat-metabolizing bacteria with weight gain. Various internal and external factors such as genetics, maternal obesity, mode of delivery, breastfeeding, nutrition, antibiotic use and the chemical compounds present in the environment are known to interfere with the richness of the gut microbiota (GM), thus influencing weight gain/loss and ultimately the development of obesity. However, the effectiveness of each factor in potentiating the shift in microbes' abundance to result in significant changes that can lead to obesity is not yet clear. In this review, we will highlight the factors involved in shaping GM, their influence on obesity and possible interventions. Understanding the influence of these factors on the diversity of the GM and how to improve their effectiveness on disease conditions could be keys in the treatment of metabolic diseases., (© 2021 The Society for Applied Microbiology.)
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- 2021
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14. Role of Hydrogen Sulfide in the Endocrine System.
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Chen HJ, Ngowi EE, Qian L, Li T, Qin YZ, Zhou JJ, Li K, Ji XY, and Wu DD
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- Animals, Endocrine System Diseases etiology, Endocrine System Diseases metabolism, Humans, Endocrine System Diseases pathology, Hydrogen Sulfide metabolism
- Abstract
Hydrogen sulfide (H
2 S), as one of the three known gaseous signal transduction molecules in organisms, has attracted a surging amount of attention. H2 S is involved in a variety of physiological and pathological processes in the body, such as dilating blood vessels (regulating blood pressure), protecting tissue from ischemia-reperfusion injury, anti-inflammation, carcinogenesis, or inhibition of cancer, as well as acting on the hypothalamus and pancreas to regulate hormonal metabolism. The change of H2 S concentration is related to a variety of endocrine disorders, and the change of hormone concentration also affects the synthesis of H2 S. Understanding the effect of biosynthesis and the concentration of H2 S on the endocrine system is useful to develop drugs for the treatment of hypertension, diabetes, and other diseases., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2021 Chen, Ngowi, Qian, Li, Qin, Zhou, Li, Ji and Wu.)- Published
- 2021
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15. Role of RONS and eIFs in Cancer Progression.
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Salaheldin YA, Mahmoud SSM, Ngowi EE, Gbordzor VA, Li T, Wu DD, and Ji XY
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- Animals, Humans, Oxidative Stress physiology, Carcinogenesis metabolism, Neoplasms metabolism, Reactive Nitrogen Species metabolism, Reactive Oxygen Species metabolism, Signal Transduction physiology
- Abstract
Various research works have piled up conflicting evidence questioning the effect of oxidative stress in cancer. Reactive oxygen and nitrogen species (RONS) are the reactive radicals and nonradical derivatives of oxygen and nitrogen. RONS can act as a double-edged weapon. On the one hand, RONS can promote cancer initiation through activating certain signal transduction pathways that direct proliferation, survival, and stress resistance. On the other hand, they can mitigate cancer progression via their resultant oxidative stress that causes many cancer cells to die, as some recent studies have proposed that high RONS levels can limit the survival of cancer cells during certain phases of cancer development. Similarly, eukaryotic translation initiation factors are key players in the process of cellular transformation and tumorigenesis. Dysregulation of such translation initiation factors in the form of overexpression, downregulation, or phosphorylation is associated with cancer cell's altering capability of survival, metastasis, and angiogenesis. Nonetheless, eIFs can affect tumor age-related features. Data shows that alternating the eukaryotic translation initiation apparatus can impact many downstream cellular signaling pathways that directly affect cancer development. Hence, researchers have been conducting various experiments towards a new trajectory to find novel therapeutic molecular targets to improve the efficacy of anticancer drugs as well as reduce their side effects, with a special focus on oxidative stress and initiation of translation to harness their effect in cancer development. An increasing body of scientific evidence recently links oxidative stress and translation initiation factors to cancer-related signaling pathways. Therefore, in this review, we present and summarize the recent findings in this field linking certain signaling pathways related to tumorigeneses such as MAPK and PI3K, with either RONS or eIFs., Competing Interests: The authors declare that they have no competing interests., (Copyright © 2021 Yasmeen Ahmed Salaheldin et al.)
- Published
- 2021
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16. Genome-Wide Analysis of Codon Usage Patterns of SARS-CoV-2 Virus Reveals Global Heterogeneity of COVID-19.
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Khattak S, Rauf MA, Zaman Q, Ali Y, Fatima S, Muhammad P, Li T, Khan HA, Khan AA, Ngowi EE, Wu DD, and Ji XY
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- Evolution, Molecular, Humans, Mutation, Phylogeny, COVID-19 virology, Codon Usage, Genome, Viral, SARS-CoV-2 genetics
- Abstract
The ongoing outbreak of coronavirus disease COVID-19 is significantly implicated by global heterogeneity in the genome organization of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). The causative agents of global heterogeneity in the whole genome of SARS-CoV-2 are not well characterized due to the lack of comparative study of a large enough sample size from around the globe to reduce the standard deviation to the acceptable margin of error. To better understand the SARS-CoV-2 genome architecture, we have performed a comprehensive analysis of codon usage bias of sixty (60) strains to get a snapshot of its global heterogeneity. Our study shows a relatively low codon usage bias in the SARS-CoV-2 viral genome globally, with nearly all the over-preferred codons' A.U. ended. We concluded that the SARS-CoV-2 genome is primarily shaped by mutation pressure; however, marginal selection pressure cannot be overlooked. Within the A/U rich virus genomes of SARS-CoV-2, the standard deviation in G.C. (42.91% ± 5.84%) and the GC3 value (30.14% ± 6.93%) points towards global heterogeneity of the virus. Several SARS-CoV-2 viral strains were originated from different viral lineages at the exact geographic location also supports this fact. Taking all together, these findings suggest that the general root ancestry of the global genomes are different with different genome's level adaptation to host. This research may provide new insights into the codon patterns, host adaptation, and global heterogeneity of SARS-CoV-2.
- Published
- 2021
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17. Skin cancer biology and barriers to treatment: Recent applications of polymeric micro/nanostructures.
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Khan NH, Mir M, Qian L, Baloch M, Ali Khan MF, Rehman AU, Ngowi EE, Wu DD, and Ji XY
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- Biology, Drug Delivery Systems, Humans, Polyethylene Glycols chemistry, Polymers chemistry, Nanostructures chemistry, Skin Neoplasms drug therapy
- Abstract
Background: Skin cancer has been the leading type of cancer worldwide. Melanoma and non-melanoma skin cancers are now the most common types of skin cancer that have been reached to epidemic proportion. Based on the rapid prevalence of skin cancers, and lack of efficient drug delivery systems, it is essential to surge the possible ways to prevent or cure the disease., Aim of Review: Although surgical modalities and therapies have been made great progress in recent years, however, there is still an urgent need to alleviate its increased burden. Hence, understanding the precise pathophysiological signaling mechanisms and all other factors of such skin insults will be beneficial for the development of more efficient therapies., Key Scientific Concepts of Review: In this review, we explained new understandings about onset and development of skin cancer and described its management via polymeric micro/nano carriers-based therapies, highlighting the current key bottlenecks and future prospective in this field. In therapeutic drug/gene delivery approaches, polymeric carriers-based system is the most promising strategy. This review discusses that how polymers have successfully been exploited for development of micro/nanosized systems for efficient delivery of anticancer genes and drugs overcoming all the barriers and limitations associated with available conventional therapies. In addition to drug/gene delivery, intelligent polymeric nanocarriers platforms have also been established for combination anticancer therapies including photodynamic and photothermal, and for theranostic applications. This portfolio of latest approaches could promote the blooming growth of research and their clinical availability., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2021 The Authors. Published by Elsevier B.V. on behalf of Cairo University.)
- Published
- 2021
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18. The Role of Hydrogen Sulfide in Respiratory Diseases.
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Khattak S, Zhang QQ, Sarfraz M, Muhammad P, Ngowi EE, Khan NH, Rauf S, Wang YZ, Qi HW, Wang D, Afzal A, Ji XY, and Wu DD
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- Animals, Clinical Trials as Topic, Gene Expression Regulation drug effects, Humans, Respiratory Tract Diseases metabolism, Signal Transduction drug effects, Sulfides pharmacology, Hydrogen Sulfide metabolism, Respiratory Tract Diseases drug therapy, Sulfides therapeutic use
- Abstract
Respiratory diseases are leading causes of death and disability around the globe, with a diverse range of health problems. Treatment of respiratory diseases and infections has been verified to be thought-provoking because of the increasing incidence and mortality rate. Hydrogen sulfide (H
2 S) is one of the recognized gaseous transmitters involved in an extensive range of cellular functions, and physiological and pathological processes in a variety of diseases, including respiratory diseases. Recently, the therapeutic potential of H2 S for respiratory diseases has been widely investigated. H2 S plays a vital therapeutic role in obstructive respiratory disease, pulmonary fibrosis, emphysema, pancreatic inflammatory/respiratory lung injury, pulmonary inflammation, bronchial asthma and bronchiectasis. Although the therapeutic role of H2 S has been extensively studied in various respiratory diseases, a concrete literature review will have an extraordinary impact on future therapeutics. This review provides a comprehensive overview of the effective role of H2 S in respiratory diseases. Besides, we also summarized H2 S production in the lung and its metabolism processes in respiratory diseases.- Published
- 2021
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19. Nanomedicine: A Promising Way to Manage Alzheimer's Disease.
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Khan NH, Mir M, Ngowi EE, Zafar U, Khakwani MMAK, Khattak S, Zhai YK, Jiang ES, Zheng M, Duan SF, Wei JS, Wu DD, and Ji XY
- Abstract
Alzheimer's disease (AD) is a devastating disease of the aging population characterized by the progressive and slow brain decay due to the formation of extracellular plaques in the hippocampus. AD cells encompass tangles of twisted strands of aggregated microtubule binding proteins surrounded by plaques. Delivering corresponding drugs in the brain to deal with these clinical pathologies, we face a naturally built strong, protective barrier between circulating blood and brain cells called the blood-brain barrier (BBB). Nanomedicines provide state-of-the-art alternative approaches to overcome the challenges in drug transport across the BBB. The current review presents the advances in the roles of nanomedicines in both the diagnosis and treatment of AD. We intend to provide an overview of how nanotechnology has revolutionized the approaches used to manage AD and highlight the current key bottlenecks and future perspective in this field. Furthermore, the emerging nanomedicines for managing brain diseases like AD could promote the booming growth of research and their clinical availability., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2021 Khan, Mir, Ngowi, Zafar, Khakwani, Khattak, Zhai, Jiang, Zheng, Duan, Wei, Wu and Ji.)
- Published
- 2021
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20. The Application of Nanotechnology for the Diagnosis and Treatment of Brain Diseases and Disorders.
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Ngowi EE, Wang YZ, Qian L, Helmy YASH, Anyomi B, Li T, Zheng M, Jiang ES, Duan SF, Wei JS, Wu DD, and Ji XY
- Abstract
Brain is by far the most complex organ in the body. It is involved in the regulation of cognitive, behavioral, and emotional activities. The organ is also a target for many diseases and disorders ranging from injuries to cancers and neurodegenerative diseases. Brain diseases are the main causes of disability and one of the leading causes of deaths. Several drugs that have shown potential in improving brain structure and functioning in animal models face many challenges including the delivery, specificity, and toxicity. For many years, researchers have been facing challenge of developing drugs that can cross the physical (blood-brain barrier), electrical, and chemical barriers of the brain and target the desired region with few adverse events. In recent years, nanotechnology emerged as an important technique for modifying and manipulating different objects at the molecular level to obtain desired features. The technique has proven to be useful in diagnosis as well as treatments of brain diseases and disorders by facilitating the delivery of drugs and improving their efficacy. As the subject is still hot, and new research findings are emerging, it is clear that nanotechnology could upgrade health care systems by providing easy and highly efficient diagnostic and treatment methods. In this review, we will focus on the application of nanotechnology in the diagnosis and treatment of brain diseases and disorders by illuminating the potential of nanoparticles., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2021 Ngowi, Wang, Qian, Helmy, Anyomi, Li, Zheng, Jiang, Duan, Wei, Wu and Ji.)
- Published
- 2021
- Full Text
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21. The Potential of Hydrogen Sulfide Donors in Treating Cardiovascular Diseases.
- Author
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Wang YZ, Ngowi EE, Wang D, Qi HW, Jing MR, Zhang YX, Cai CB, He QL, Khattak S, Khan NH, Jiang QY, Ji XY, and Wu DD
- Subjects
- Administration, Inhalation, Animals, Cardiovascular Diseases metabolism, Cell Movement, Humans, Neovascularization, Physiologic physiology, Oxidative Stress physiology, Cardiovascular Agents pharmacology, Cardiovascular Diseases drug therapy, Hydrogen Sulfide administration & dosage, Hydrogen Sulfide metabolism
- Abstract
Hydrogen sulfide (H
2 S) has long been considered as a toxic gas, but as research progressed, the idea has been updated and it has now been shown to have potent protective effects at reasonable concentrations. H2 S is an endogenous gas signaling molecule in mammals and is produced by specific enzymes in different cell types. An increasing number of studies indicate that H2 S plays an important role in cardiovascular homeostasis, and in most cases, H2 S has been reported to be downregulated in cardiovascular diseases (CVDs). Similarly, in preclinical studies, H2 S has been shown to prevent CVDs and improve heart function after heart failure. Recently, many H2 S donors have been synthesized and tested in cellular and animal models. Moreover, numerous molecular mechanisms have been proposed to demonstrate the effects of these donors. In this review, we will provide an update on the role of H2 S in cardiovascular activities and its involvement in pathological states, with a special focus on the roles of exogenous H2 S in cardiac protection.- Published
- 2021
- Full Text
- View/download PDF
22. Role of hydrogen sulfide donors in cancer development and progression.
- Author
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Ngowi EE, Afzal A, Sarfraz M, Khattak S, Zaman SU, Khan NH, Li T, Jiang QY, Zhang X, Duan SF, Ji XY, and Wu DD
- Subjects
- Animals, Disease Progression, Humans, Molecular Targeted Therapy, Neoplasms drug therapy, Gasotransmitters metabolism, Hydrogen Sulfide metabolism, Neoplasms metabolism, Sulfides therapeutic use
- Abstract
In recent years, a vast number of potential cancer therapeutic targets have emerged. However, developing efficient and effective drugs for the targets is of major concern. Hydrogen sulfide (H
2 S), one of the three known gasotransmitters, is involved in the regulation of various cellular activities such as autophagy, apoptosis, migration, and proliferation. Low production of H2 S has been identified in numerous cancer types. Treating cancer cells with H2 S donors is the common experimental technique used to improve H2 S levels; however, the outcome depends on the concentration/dose, time, cell type, and sometimes the drug used. Both natural and synthesized donors are available for this purpose, although their effects vary independently ranging from strong cancer suppressors to promoters. Nonetheless, numerous signaling pathways have been reported to be altered following the treatments with H2 S donors which suggest their potential in cancer treatment. This review will analyze the potential of H2 S donors in cancer therapy by summarizing key cellular processes and mechanisms involved., Competing Interests: Competing Interests: The authors have declared that no competing interest exists., (© The author(s).)- Published
- 2021
- Full Text
- View/download PDF
23. Roles of Hydrogen Sulfide Donors in Common Kidney Diseases.
- Author
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Ngowi EE, Sarfraz M, Afzal A, Khan NH, Khattak S, Zhang X, Li T, Duan SF, Ji XY, and Wu DD
- Abstract
Hydrogen sulfide (H
2 S) plays a key role in the regulation of physiological processes in mammals. The decline in H2 S level has been reported in numerous renal disorders. In animal models of renal disorders, treatment with H2 S donors could restore H2 S levels and improve renal functions. H2 S donors suppress renal dysfunction by regulating autophagy, apoptosis, oxidative stress, and inflammation through multiple signaling pathways, such as TRL4/NLRP3, AMP-activated protein kinase/mammalian target of rapamycin, transforming growth factor-β1/Smad3, extracellular signal-regulated protein kinases 1/2, mitogen-activated protein kinase, and nuclear factor kappa B. In this review, we summarize recent developments in the effects of H2 S donors on the treatment of common renal diseases, including acute/chronic kidney disease, renal fibrosis, unilateral ureteral obstruction, glomerulosclerosis, diabetic nephropathy, hyperhomocysteinemia, drug-induced nephrotoxicity, metal-induced nephrotoxicity, and urolithiasis. Novel H2 S donors can be designed and applied in the treatment of common renal diseases., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2020 Ngowi, Sarfraz, Afzal, Hussain Khan, Khattak, Zhang, Li, Duan, Ji and Wu.)- Published
- 2020
- Full Text
- View/download PDF
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