11 results on '"Ng QK"'
Search Results
2. AI-Based Automated Lipomatous Tumor Segmentation in MR Images: Ensemble Solution to Heterogeneous Data.
- Author
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Liu CC, Abdelhafez YG, Yap SP, Acquafredda F, Schirò S, Wong AL, Sarohia D, Bateni C, Darrow MA, Guindani M, Lee S, Zhang M, Moawad AW, Ng QK, Shere L, Elsayes KM, Maroldi R, Link TM, Nardo L, and Qi J
- Subjects
- Humans, Artificial Intelligence, Image Processing, Computer-Assisted methods, Magnetic Resonance Imaging methods
- Abstract
Deep learning (DL) has been proposed to automate image segmentation and provide accuracy, consistency, and efficiency. Accurate segmentation of lipomatous tumors (LTs) is critical for correct tumor radiomics analysis and localization. The major challenge of this task is data heterogeneity, including tumor morphological characteristics and multicenter scanning protocols. To mitigate the issue, we aimed to develop a DL-based Super Learner (SL) ensemble framework with different data correction and normalization methods. Pathologically proven LTs on pre-operative T1-weighted/proton-density MR images of 185 patients were manually segmented. The LTs were categorized by tumor locations as distal upper limb (DUL), distal lower limb (DLL), proximal upper limb (PUL), proximal lower limb (PLL), or Trunk (T) and grouped by 80%/9%/11% for training, validation and testing. Six configurations of correction/normalization were applied to data for fivefold-cross-validation trainings, resulting in 30 base learners (BLs). A SL was obtained from the BLs by optimizing SL weights. The performance was evaluated by dice-similarity-coefficient (DSC), sensitivity, specificity, and Hausdorff distance (HD95). For predictions of the BLs, the average DSC, sensitivity, and specificity from the testing data were 0.72 [Formula: see text] 0.16, 0.73 [Formula: see text] 0.168, and 0.99 [Formula: see text] 0.012, respectively, while for SL predictions were 0.80 [Formula: see text] 0.184, 0.78 [Formula: see text] 0.193, and 1.00 [Formula: see text] 0.010. The average HD95 of the BLs were 11.5 (DUL), 23.2 (DLL), 25.9 (PUL), 32.1 (PLL), and 47.9 (T) mm, whereas of SL were 1.7, 8.4, 15.9, 2.2, and 36.6 mm, respectively. The proposed method could improve the segmentation accuracy and mitigate the performance instability and data heterogeneity aiding the differential diagnosis of LTs in real clinical situations., (© 2023. The Author(s).)
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- 2023
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3. Total-body PET/CT - First Clinical Experiences and Future Perspectives.
- Author
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Ng QK, Triumbari EKA, Omidvari N, Cherry SR, Badawi RD, and Nardo L
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- Child, Humans, Positron Emission Tomography Computed Tomography methods, Positron-Emission Tomography methods
- Abstract
Total-body PET has come a long way from its first conception to today, with both total-body and long axial field of view (> 1m) scanners now being commercially available world-wide. The conspicuous signal collection efficiency gain, coupled with high spatial resolution, allows for higher sensitivity and improved lesion detection, enhancing several clinical applications not readily available on current conventional PET/CT scanners. This technology can provide (a) reduction in acquisition times with preservation of diagnostic quality images, benefitting specific clinical situations (i.e. pediatric patients) and the use of several existing radiotracers that present transient uptake over time and where small differences in acquisition time can greatly impact interpretation of images; (b) reduction in administered activity with minimal impact on image noise, thus reducing effective dose to the patient, improving staff safety, and helping with logistical concerns for short-lived radionuclides or long-lived radionuclides with poor dosimetry profiles that have had limited use on conventional PET scanners until now; (c) delayed scanning, that has shown to increase the detection of even small and previously occult malignant lesions by improved clearance in regions of significant background activity and by reduced visibility of coexisting inflammatory processes; (d) improvement in image quality, as a consequence of higher spatial resolution and sensitivity of total-body scanners, implying better appreciation of small structures and clinical implications with downstream prognostic consequences for patients; (e) simultaneous total-body dynamic imaging, that allows the measurement of full spatiotemporal distribution of radiotracers, kinetic modeling, and creation of multiparametric images, providing physiologic and biologically relevant data of the entire body at the same time. On the other hand, the higher physical and clinical sensitivity of total-body scanners bring along some limitations and challenges. The strong impact on clinical sensitivity potentially increases the number of false positive findings if the radiologist does not recalibrate interpretation considering the new technique. Delayed scanning causes logistical issues and introduces new interpretation questions for radiologists. Data storage capacity, longer processing and reconstruction time issues are other limitations, but they may be overcome in the near future by advancements in reconstruction algorithms and computing hardware., Competing Interests: Declaration of Competing Interest Lorenzo Nardo has is principal investigator of a service agreement with United Imaging Healthcare. UC Davis has a revenue-sharing agreement with United Imaging Healthcare that is based on uEXPLORER sales. The authors thank all the EXPLORER team at UC Davis. The authors acknowledge NIH R01CA249422-01., (Copyright © 2022 Elsevier Inc. All rights reserved.)
- Published
- 2022
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4. Indium-111 labeled gold nanoparticles for in-vivo molecular targeting.
- Author
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Ng QK, Olariu CI, Yaffee M, Taelman VF, Marincek N, Krause T, Meier L, and Walter MA
- Subjects
- Cell Line, Tumor, Drug Delivery Systems methods, Feasibility Studies, Humans, Image Processing, Computer-Assisted, Integrin alphaVbeta3 metabolism, Molecular Imaging, Indium, Metal Nanoparticles chemistry, Radioisotopes
- Abstract
The present report describes the synthesis and biological evaluation of a molecular imaging platform based on gold nanoparticles directly labeled with indium-111. The direct labeling approach facilitated radiolabeling with high activities while maintaining excellent stability within the biological environment. The resulting imaging platform exhibited low interference of the radiolabel with targeting molecules, which is highly desirable for in-vivo probe tracking and molecular targeted tumor imaging. The indium-111 labeled gold nanoparticles were synthesized using a simple procedure that allowed stable labeling of the nanoparticle core with various indium-111 activities. Subsequent surface modification of the particle cores with RGD-based ligands at various densities allowed for molecular targeting of the αvß3 integrin in-vitro and for molecular targeted imaging in human melanoma and glioblastoma models in-vivo. The results demonstrate the vast potential of direct labeling with radioisotopes for tracking gold nanoparticles within biological systems., (Copyright © 2014 Elsevier Ltd. All rights reserved.)
- Published
- 2014
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5. Somatostatin-based radiopeptide therapy with [177Lu-DOTA]-TOC versus [90Y-DOTA]-TOC in neuroendocrine tumours.
- Author
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Romer A, Seiler D, Marincek N, Brunner P, Koller MT, Ng QK, Maecke HR, Müller-Brand J, Rochlitz C, Briel M, Schindler C, and Walter MA
- Subjects
- Adolescent, Adult, Aged, 80 and over, Child, Female, Humans, Male, Middle Aged, Octreotide adverse effects, Octreotide therapeutic use, Radiopharmaceuticals adverse effects, Treatment Outcome, Neuroendocrine Tumors radiotherapy, Octreotide analogs & derivatives, Radiopharmaceuticals therapeutic use
- Abstract
Purpose: Somatostatin-based radiopeptide treatment is generally performed using the β-emitting radionuclides (90)Y or (177)Lu. The present study aimed at comparing benefits and harms of both therapeutic approaches., Methods: In a comparative cohort study, patients with advanced neuroendocrine tumours underwent repeated cycles of [(90)Y-DOTA]-TOC or [(177)Lu-DOTA]-TOC until progression of disease or permanent adverse events. Multivariable Cox regression and competing risks regression were employed to examine predictors of survival and adverse events for both treatment groups., Results: Overall, 910 patients underwent 1,804 cycles of [(90)Y-DOTA]-TOC and 141 patients underwent 259 cycles of [(177)Lu-DOTA]-TOC. The median survival after [(177)Lu-DOTA]-TOC and after [(90)Y-DOTA]-TOC was comparable (45.5 months versus 35.9 months, hazard ratio 0.91, 95% confidence interval 0.63-1.30, p = 0.49). Subgroup analyses revealed a significantly longer survival for [(177)Lu-DOTA]-TOC over [(90)Y-DOTA]-TOC in patients with low tumour uptake, solitary lesions and extra-hepatic lesions. The rate of severe transient haematotoxicities was lower after [(177)Lu-DOTA]-TOC treatment (1.4 vs 10.1%, p = 0.001), while the rate of severe permanent renal toxicities was similar in both treatment groups (9.2 vs 7.8%, p = 0.32)., Conclusion: The present results revealed no difference in median overall survival after [(177)Lu-DOTA]-TOC and [(90)Y-DOTA]-TOC. Furthermore, [(177)Lu-DOTA]-TOC was less haematotoxic than [(90)Y-DOTA]-TOC.
- Published
- 2014
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6. The impact of 18F-FDG PET on the management of patients with suspected large vessel vasculitis.
- Author
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Fuchs M, Briel M, Daikeler T, Walker UA, Rasch H, Berg S, Ng QK, Raatz H, Jayne D, Kötter I, Blockmans D, Cid MC, Prieto-González S, Lamprecht P, Salvarani C, Karageorgaki Z, Watts R, Luqmani R, Müller-Brand J, Tyndall A, and Walter MA
- Subjects
- Adolescent, Adult, Aged, Aged, 80 and over, Arteritis pathology, Case-Control Studies, Female, Humans, Immunosuppressive Agents therapeutic use, Male, Middle Aged, Positron-Emission Tomography methods, Predictive Value of Tests, Regression Analysis, Reproducibility of Results, Rheumatology methods, Sensitivity and Specificity, Takayasu Arteritis pathology, Fluorodeoxyglucose F18 pharmacology, Radiopharmaceuticals pharmacology, Vasculitis diagnostic imaging, Vasculitis drug therapy
- Abstract
Purpose: We aimed to assess the impact of (18)F-fluorodeoxyglucose (FDG) positron emission tomography (PET) on the management of patients with suspected large vessel vasculitis., Methods: An international expert panel determined diagnoses and clinical management in patients with suspected large vessel vasculitis, with and without the results of (18)F-FDG PET, respectively. The accuracy of the clinical diagnosis and the resulting clinical management with and without the (18)F-FDG PET results were compared using logistic regression models., Results: The analysis included 30 patients referred to a tertiary care centre with large vessel vasculitis and 31 controls. (18)F-FDG PET had an overall sensitivity of 73.3% [95% confidence interval (CI) 54.1-87.7%], a specificity of 83.9% (95% CI 66.3-94.5%), a positive predictive value of 81.5% (95% CI 61.9-93.7%) and a negative predictive value of 76.5% (95% CI 58.8-89.3%). The diagnostic accuracy of (18)F-FDG PET was higher in patients not receiving immunosuppressive drugs (93.3 vs 64.5%, p = 0.006). Taken in context with other available diagnostic modalities, the addition of (18)F-FDG PET increased the clinical diagnostic accuracy from 54.1 to 70.5% (p = 0.04). The addition of (18)F-FDG PET increased the number of indicated biopsies from 22 of 61 patients (36.1%) to 25 of 61 patients (41.0%) and changed the treatment recommendation in 8 of 30 patients (26.7%) not receiving immunosuppressive medication and in 7 of 31 patients (22.6%) receiving immunosuppressive medication., Conclusion: (18)F-FDG PET is a sensitive and specific imaging tool for large vessel vasculitis, especially when performed in patients not receiving immunosuppressive drugs. It increases the overall diagnostic accuracy and has an impact on the clinical management in a significant proportion of patients.
- Published
- 2012
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7. Physically associated synthetic hydrogels with long-term covalent stabilization for cell culture and stem cell transplantation.
- Author
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Zhang J, Tokatlian T, Zhong J, Ng QK, Patterson M, Lowry WE, Carmichael ST, and Segura T
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- Animals, Cell Culture Techniques, Humans, Induced Pluripotent Stem Cells cytology, Mesenchymal Stem Cells cytology, Mice, Polyethylene Glycols chemistry, Polymers chemistry, Stem Cell Transplantation, Sulfides chemistry, Hydrogels chemistry, Stem Cells cytology
- Published
- 2011
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8. Protein-polymer nanoparticles for nonviral gene delivery.
- Author
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Zhang J, Lei Y, Dhaliwal A, Ng QK, Du J, Yan M, Lu Y, and Segura T
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- Animals, Cells, Cultured, Electrophoresis, Polyacrylamide Gel, Genetic Vectors, Humans, Mice, Microscopy, Electron, Transmission, Spectroscopy, Fourier Transform Infrared, Gene Transfer Techniques, Nanoparticles, Polymers chemistry, Proteins chemistry
- Abstract
Protein-polymer conjugates were investigated as nonviral gene delivery vectors. BSA-poly(dimethylamino) ethyl methacrylate (PDMA) nanoparticles (nBSA) were synthesized using in situ atom transfer radical polymerization (in situ ATRP) and BSA as a macroinitiator. The diameter and charge of nBSA was a function of the ATRP reaction time and ranged from 5 to 15 nm and +8.9 to +22.5, respectively. nBSA were able to condense plasmid DNA (pDNA) and form polyplexes with an average diameter of 50 nm. nBSA/pDNA polyplexes transfected cells with similar efficiencies or better as compared to linear and branched PEI. Interestingly, the nBSA particle diameter and charge did not affect pDNA complexation and transgene expression, indicating that the same gene delivery efficiency can be achieved with lower charge ratios. We believe that with the use of protein-polymer conjugates additional functionality could be introduced to polyplexes by using different protein cores and, thus, they pose an interesting alternative to the design of nonviral gene delivery vectors.
- Published
- 2011
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9. Clustered Arg-Gly-Asp peptides enhances tumor targeting of nonviral vectors.
- Author
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Ng QK, Su H, Armijo AL, Czernin J, Radu CG, and Segura T
- Subjects
- Amino Acid Sequence, Animals, Cell Line, Tumor, Genetic Vectors drug effects, HeLa Cells, Humans, Mice, Molecular Sequence Data, NIH 3T3 Cells, Neoplasms metabolism, Neoplasms pathology, Oligopeptides chemistry, Positron-Emission Tomography methods, Structure-Activity Relationship, Neoplasms drug therapy, Oligopeptides therapeutic use
- Published
- 2011
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10. Two and three-dimensional gene transfer from enzymatically degradable hydrogel scaffolds.
- Author
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Lei Y, Ng QK, and Segura T
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- Animals, Bone Marrow Cells cytology, Bone Marrow Cells metabolism, Cell Differentiation, Cell Line, DNA chemistry, DNA genetics, Green Fluorescent Proteins genetics, Green Fluorescent Proteins metabolism, Hydrolysis, Imines chemistry, Luciferases genetics, Luciferases metabolism, Mesenchymal Stem Cells cytology, Mesenchymal Stem Cells metabolism, Mice, Polyethylenes chemistry, Gene Transfer Techniques instrumentation, Hydrogel, Polyethylene Glycol Dimethacrylate chemistry, Matrix Metalloproteinase 9 chemistry, Tissue Engineering instrumentation, Tissue Scaffolds chemistry
- Abstract
The ability to genetically modify mesenchymal stem cells (MSCs) seeded inside synthetic hydrogel scaffolds would offer an alternative approach to guide MSC differentiation. In this report, we explored gene transfer to MSCs seeded on top or inside matrix metalloproteinase (MMP) degradable hydrogels that were loaded with DNA/poly(ethylene imine) (PEI) polyplexes. DNA/PEI polyplexes were encapsulated inside poly(ethylene glycol) (PEG) hydrogels crosslinked with MMP degradable peptides via Michael Addition chemistry. Gene transfer was visualized and quantified through using a vector encoding for green fluorescent protein and luciferase. We found that gene transfer to MSCs was possible for cells seeded both in two and three dimensions. The amount of luciferase expression was similar for cells seeded in two and three dimensions even though the number of cells in three dimensions is significantly higher, indicating that gene transfer to cells seeded in two dimensions is more efficient than for cells seeded in three dimensions. The use of hydrogel scaffolds that allow cellular infiltration to deliver DNA may result in long-lasting signals in vivo, which are essential for the regeneration of functional tissues.
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- 2010
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11. Engineering clustered ligand binding into nonviral vectors: alphavbeta3 targeting as an example.
- Author
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Ng QK, Sutton MK, Soonsawad P, Xing L, Cheng H, and Segura T
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- Flow Cytometry, HeLa Cells, Humans, Imines chemistry, Models, Biological, Nanoparticles chemistry, Oligopeptides chemistry, Polyethylenes chemistry, Gene Transfer Techniques, Genetic Vectors chemistry, Integrin alphaVbeta3 chemistry, Integrin alphaVbeta3 metabolism
- Abstract
The development of techniques to efficiently deliver genes using nonviral approaches can broaden the application of gene delivery in medical applications without the safety concerns associated with viral vectors. Here, we designed a clustered integrin-binding platform to enhance the efficiency and targetability of nonviral gene transfer to HeLa cells with low and high densities of alpha(v)beta(3) integrin receptors. Arg-Gly-Asp (RGD) nanoclusters were formed using gold nanoparticles functionalized with RGD peptides and used to modify the surface of DNA/poly(ethylene imine) (PEI) polyplexes. DNA/PEI polyplexes with attached RGD nanoclusters resulted in either 5.4- or 35-fold increase in gene transfer efficiency over unmodified polyplexes for HeLa cells with low- or high-integrin surface density, respectively. The transfection efficiency obtained with the commercially available vector jetPEI-RGD was used for comparison as a vector without clustered binding. JetPEI-RGD exhibited a 1.2-fold enhancement compared to unmodified jetPEI in cells with high densities of alpha(v)beta(3) integrin receptors. The data presented here emphasize the importance of the RGD conformational arrangement on the surface of the polyplex to achieve efficient targeting and gene transfer, and provide an approach to introduce clustering to a wide variety of nanoparticles for gene delivery.
- Published
- 2009
- Full Text
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