8 results on '"Neto, José Ribamar Costa Ferreira"'
Search Results
2. Hormonal Regulation of Heavy Metal Toxicity and Tolerance in Crop Plants
- Author
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Kido, Éderson Akio, primary, de Andrade Luz, Gizele, additional, da Silva, Valquíria, additional, da Costa Gomes, Maria Fernanda, additional, and Neto, José Ribamar Costa Ferreira, additional
- Published
- 2023
- Full Text
- View/download PDF
3. The Transcriptional Modulation of Inositols and Raffinose Family Oligosaccharides Pathways in Plants — An (A)Biotic Stress Perspective
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Neto, José Ribamar Costa Ferreira, primary, Souza, Amanda Cordeiro de Melo, additional, da Silva, Manassés Daniel, additional, Benko-Iseppon, Ana Maria, additional, Pandolfi, Valesca, additional, da Costa, Antonio Félix, additional, and Kido, Ederson Akio, additional
- Published
- 2016
- Full Text
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4. Epigenetic Signals on Plant Adaptation: A Biotic Stress Perspective
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Ederson Akio Kido, Sergio Crovella, José Ribamar Costa Ferreira Neto, Valesca Pandolfi, Ana Maria Benko-Iseppon, Manassés Daniel da Silva, Neto, José Ribamar Costa Ferreira, da Silva, Manassés Daniel, Pandolfi, Valesca, Crovella, Sérgio, Benko-Iseppon, Ana Maria, and Kido, Ederson Akio
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0301 basic medicine ,Transcription, Genetic ,Gene mutation ,Biology ,Biochemistry ,Chromatin remodeling ,Epigenesis, Genetic ,Histones ,03 medical and health sciences ,Epigenetics of physical exercise ,Gene Expression Regulation, Plant ,Stress, Physiological ,SiRNA ,Plant Immunity ,Epigenetics ,Molecular Biology ,Disease Resistance ,Plant Diseases ,Genetics ,Regulation of gene expression ,Inheritance ,030102 biochemistry & molecular biology ,Histone modifications ,MicroRNA ,General Medicine ,Cell Biology ,Biotic stress ,DNA Methylation ,Plants ,Adaptation, Physiological ,Chromatin ,DNA methylation ,Histone modification ,Protein Processing, Post-Translational ,Signal Transduction ,Transcription Factors - Abstract
For sessile organisms such as plants, regulatory mechanisms of gene expression are vital, since they remain exposed to climatic and biological threats. Thus, they have to face hazards with instantaneous reorganization of their internal environment. For this purpose, besides the use of transcription factors, the participation of chromatin as an active factor in the regulation of transcription is crucial. Chemical changes in chromatin structure affect the accessibility of the transcriptional machinery and acting in signaling, engaging/inhibiting factors that participate in the transcription processes. Mechanisms in which gene expression undergoes changes without the occurrence of DNA gene mutations in the monomers that make up DNA, are understood as epigenetic phenomena. These include (1) post-translational modifications of histones, which results in stimulation or repression of gene activity and (2) cytosine methylation in the promoter region of individual genes, both preventing access of transcriptional activators as well as signaling the recruitment of repressors. There is evidence that such modifications can pass on to subsequent generations of daughter cells and even generations of individuals. However, reports indicate that they persist only in the presence of a stressor factor (or an inductor of the above-mentioned modifications). In its absence, these modifications weaken or lose heritability, being eliminated in the next few generations. In this review, it is argued how epigenetic signals influence gene regulation, the mechanisms involved and their participation in processes of resistance to biotic stresses, controlling processes of the plant immune system.
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- 2017
5. Resistance (R) Genes: Applications and Prospects for Plant Biotechnology and Breeding
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Ana Maria Benko Iseppon, Manassés Daniel da Silva, Sergio Crovella, Ana Carolina Wanderley-Nogueira, Roberta Lane de Oliveira Silva, Ederson Akio Kido, Lidiane Lindinalva Barbosa Amorim, José Ribamar Costa Ferreira Neto, Valesca Pandolfi, Pandolfi, Valesca, Neto, José Ribamar Costa Ferreira, Silva, Manassés Daniel, Amorim, Lidiane Lindinalva Barbosa, Wanderley-Nogueira, Ana Carolina, de Oliveira Silva, Roberta Lane, Kido, Ederson Akio, Crovella, Sergio, and Iseppon, Ana Maria Benko
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0301 basic medicine ,disease resistance ,Protein Serine-Threonine Kinases ,Biology ,Plant disease resistance ,directed mutagenesis ,Biochemistry ,DNA sequencing ,03 medical and health sciences ,Genome editing ,Gene Expression Regulation, Plant ,Cisgenesis ,Protein Isoforms ,genetic modification ,Plant Immunity ,Molecular Biology ,Gene ,Selection (genetic algorithm) ,Plant Diseases ,Plant Proteins ,Gene Editing ,Resistance (ecology) ,Arabidopsis Proteins ,business.industry ,fungi ,food and beverages ,Cell Biology ,General Medicine ,plant pathogen ,Plants ,Plants, Genetically Modified ,Biotechnology ,Plant Breeding ,030104 developmental biology ,Host-Pathogen Interactions ,Mutagenesis, Site-Directed ,Identification (biology) ,CRISPR-Cas Systems ,business ,Signal Transduction - Abstract
The discovery of novel plant resistance (R) genes (including their homologs and analogs) opened interesting possibilities for controlling plant diseases caused by several pathogens. However, due to environmental pressure and high selection operated by pathogens, several crop plants have lost specificity, broad-spectrum or durability of resistance. On the other hand, the advances in plant genome sequencing and biotechnological approaches, combined with the increasing knowledge on R-genes have provided new insights on their applications for plant genetic breeding, allowing the identification and implementation of novel and efficient strategies that enhance or optimize their use for efficiently controlling plant diseases. The present review focuses on main perspectives of application of R-genes and its co-players for the acquisition of resistance to pathogens in cultivated plants, with emphasis on biotechnological inferences, including transgenesis, cisgenesis, directed mutagenesis and gene editing, with examples of success and challenges to be faced.
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- 2017
6. Snakin: Structure, Roles and Applications of a Plant Antimicrobial Peptide
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Susana Rodríguez-Decuadro, José Ribamar Costa Ferreira Neto, Valesca Pandolfi, Marx Oliveira-Lima, Ederson Akio Kido, Sergio Crovella, Ana Maria Benko-Iseppon, Oliveira-Lima, Marx, Benko-Iseppon, Ana Maria, Neto, José Ribamar Costa Ferreira, Rodríguez-Decuadro, Susana, Kido, Ederson Akio, Crovella, Sergio, and Pandolfi, Valesca
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0301 basic medicine ,Signal peptide ,Antimicrobial peptides ,Protein domain ,Gene Expression ,Sequence alignment ,Biology ,Snakin/GASA domain ,Biochemistry ,crosstalk ,03 medical and health sciences ,chemistry.chemical_compound ,Plant Growth Regulators ,Protein Domains ,Stress, Physiological ,Plant Immunity ,cysteine-bridges ,stress response ,Amino Acid Sequence ,Mode of action ,Molecular Biology ,Peptide sequence ,Abscisic acid ,Disease Resistance ,Plant Diseases ,Plant Proteins ,Sequence Homology, Amino Acid ,Arabidopsis Proteins ,cysteine-bridge ,Membrane Proteins ,food and beverages ,Cell Biology ,General Medicine ,Plants ,Adaptation, Physiological ,Protein tertiary structure ,030104 developmental biology ,chemistry ,Salicylic Acid ,Sequence Alignment ,Abscisic Acid - Abstract
Snakins are plant antimicrobial peptides (AMPs) of the Snakin/GASA family, formed by three distinct regions: an N-terminal signal peptide; a variable site; and the GASA domain in the Cterminal region composed by twelve conserved cysteine residues that contribute to the biochemical stability of the molecule. These peptides are known to play different roles in response to a variety of biotic (i.e., induced by bacteria, fungi and nematode pathogens) and abiotic (salinity, drought and ROS) stressors, as well as in crosstalk promoted by plant hormones, with emphasis on abscisic and salicylic acid (ABA and SA, respectively). Such properties make snakin/GASA members promising biotechnological sources for potential therapeutic and agricultural applications. However, information regarding their tertiary structure, mode of action and function are not yet completely elucidated. The present review presents aspects of snakin structure, expression, functional studies and perspectives about the potential applications for agricultural and medical purposes.
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- 2017
7. Plants Defense-related Cyclic Peptides: Diversity, Structure and Applications.
- Author
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da Silva Lima SC, Benko-Iseppon AM, Bezerra-Neto JP, Amorim LL, Neto JR, Crovella S, and Pandolfi V
- Abstract
Plant growth is prone to several unfavorable factors that may compromise or impair development and survival, including abiotic or biotic stressors. Aiming at defending themselves, plants have developed several strategies to survive and adapt to such adversities. Cyclotides are a family of plant-derived proteins that exhibit a diverse range of biological activities including antimicrobial and insecticidal activities that actively participate in plant defense processes. Three main categories of peptides have been described: (i) Cyclotides (ii) Sunflower Trypsin Inhibitor (SFTI) and (iii) peptides MCoTI-I and II, from Momordica cochinchinensis. They comprise proteins of approximately 30 amino acids, containing a head-to-tail cyclized backbone, with three disulfide bonds configured in a cystine knot topology, therefore bearing greater peptide stability. Given their features and multifunctionality, cyclotides stand out as promising sources for the discovery of new antimicrobial agents. The present review describes cyclotide occurrence, abundance and action in plants, also their and evolution. Considerations regarding their use in the context of biomedical and agronomical sciences uses are also presented.
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- 2016
8. Identification of plant protein kinases in response to abiotic and biotic stresses using SuperSAGE.
- Author
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Kido EA, Barbosa PK, Neto JR, Pandolfi V, Houllou-Kido LM, Crovella S, Molina C, Kahl G, and Benko-Iseppon AM
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- Cluster Analysis, Expressed Sequence Tags, Fabaceae enzymology, Fabaceae genetics, Gene Expression Regulation, Plant, Molecular Sequence Annotation, Oryza enzymology, Oryza genetics, Plants genetics, Protein Kinases genetics, Proteomics methods, Salt Tolerance, Databases, Genetic, Gene Expression Profiling, Plants enzymology, Protein Kinases metabolism, Stress, Physiological
- Abstract
Plants are sessile organisms subjected to many environmental adversities. For their survival they must sense and respond to biotic and abiotic stresses efficiently. During this process, protein kinases are essential in the perception of environmental stimuli, triggering signaling cascades. Kinases are among the largest and most important gene families for biotechnological purposes, bringing many challenges to the bioinformaticians due to the combination of conserved domains besides diversified regions. Cowpea [Vigna unguiculata (L.) Walp.] is an important legume that is adapted to different agroclimatic conditions, including drought, humidity and a range of temperatures. For this crop, the association of the SuperSAGE method with high-throughput sequencing technology would generate reliable transcriptome profiles with millions of tags counted and statistically analyzed. An approach evaluating biotic and abiotic stresses was carried out generating over 13 million cowpea SuperSAGE tags available from leaves/roots of plants under abiotic (mechanical injury and salinity) or biotic (CABMV, Cowpea aphid born mosaic virus) stresses. The annotation and identification of tags linked by BlastN to previously well described ESTs, allowed the posterior identification of kinases. The annotation efficiency depended on the database used, with the KEGG figuring as a good source for annotated ESTs especially when complemented by an independent Gene Ontology categorization, as well as the Gene Index using selected species. The use of different approaches allowed the identification of 1,350 kinase candidates considering biotic libraries and 2,268 regarding abiotic libraries, based on a combination of both, adequate descriptions and GO terms. Additional searches in kinase specific databases allowed the identification of a relatively low number of additional kinases, uncovering the lack of kinase databases for non-model organisms, especially plants. Concerning the kinase families, a total of 713 potential kinases were classified into 13 families of the CMGC and STE groups. Concerning the differentially expressed kinases, 169 of the 713 potential kinases were identified (p < 0.05), 100 up- and 69 down-regulated when comparing distinct libraries, allowing the generation of a comprehensive panel of the differentially expressed kinases under biotic and abiotic stresses in a non-model plant as cowpea.
- Published
- 2011
- Full Text
- View/download PDF
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