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Emissions from agricultural sources substantially contribute to global warming. The inverse dispersion method (IDM) has been successfully used for emission measurements from various agricultural sources. The IDM has also been validated in multiple studies with artificial gas releases mostly in open fields. Release experiments from buildings have rarely been conducted and were partly affected by additional nearby sources of the target gas. Specific release studies for naturally ventilated animal housings are lacking. In this study, a known and predefined amount of methane (CH4) was released from an artificial source inside a barn that mimicked a naturally ventilated dairy housing, and IDM recovery rates, using a backward Lagrangian stochastic (bLS) model, were determined. For concentration measurements, open-path devices (OPs) with a path length of 110 m were placed in a downwind direction of the barn at fetches of 2.0h, 5.3h, 8.6h, and 12h (h equals the height of the highest obstacle), and a 3D ultrasonic anemometer (UA) was placed in the middle of the first three OP paths. Upwind of the barn, an additional OP and a UA were installed. The median IDM recovery rates determined with the UA placed upwind of the barn and the downwind OP ranged between 0.55–0.75. It is concluded that, for the present study case, the effect of the building and a tree in the main wind axis led to a systematic underestimation of the IDM-derived emission rate probably due to deviations in the wind field and turbulent dispersion from the underlying assumptions of the used dispersion model.

Ammonia (NH3) in the atmosphere affects both the environment and human health. It is therefore increasingly recognised by policy makers as an important air pollutant that needs to be mitigated, though it still remains unregulated in many countries. In order to understand the effectiveness of abatement strategies, routine NH3 monitoring is required. Current reference protocols, first developed in the 1990s, use daily samplers with offline analysis; however, there have been a number of technologies developed since, which may be applicable for high time resolution routine monitoring of NH3 at ambient concentrations. The following study is a comprehensive field intercomparison held over an intensively managed grassland in southeastern Scotland using currently available methods that are reported to be suitable for routine monitoring of ambient NH3. In total, 13 instruments took part in the field study, including commercially available technologies, research prototype instruments, and legacy instruments. Assessments of the instruments' precision at low concentrations (< 10 ppb) and at elevated concentrations (maximum reported concentration of 282 ppb) were undertaken. At elevated concentrations, all instruments performed well and with precision (r2 > 0.75). At concentrations below 10 ppb, however, precision decreased, and instruments fell into two distinct groups, with duplicate instruments split across the two groups. It was found that duplicate instruments performed differently as a result of differences in instrument setup, inlet design, and operation of the instrument. New metrological standards were used to evaluate the accuracy in determining absolute concentrations in the field. A calibration-free CRDS optical gas standard (OGS, PTB, DE) served as an instrumental reference standard, and instrument operation was assessed against metrological calibration gases from (i) a permeation system (ReGaS1, METAS, CH) and (ii) primary standard gas mixtures (PSMs) prepared by gravimetry (NPL, UK). This study suggests that, although the OGS gives good performance with respect to sensitivity and linearity against the reference gas standards, this in itself is not enough for the OGS to be a field reference standard, because in field applications, a closed path spectrometer has limitations due to losses to surfaces in sampling NH3, which are not currently taken into account by the OGS. Overall, the instruments compared with the metrological standards performed well, but not every instrument could be compared to the reference gas standards due to incompatible inlet designs and limitations in the gas flow rates of the standards. This work provides evidence that, although NH3 instrumentation have greatly progressed in measurement precision, there is still further work required to quantify the accuracy of these systems under field conditions. It is the recommendation of this study that the use of instruments for routine monitoring of NH3 needs to be set out in standard operating protocols for inlet setup, calibration, and routine maintenance in order for datasets to be comparable.

Open-path measurements of methane (CH4) with the use of GasFinder systems (Boreal Laser Inc, Edmonton Canada) have been frequently used for emission estimation with the inverse dispersion method (IDM), particularly from agricultural sources. It is common to many IDM applications that the concentration enhancement related to CH4 sources is small, typically between 0.05 and 0.5 ppm, and accurate measurements of CH4 concentrations are needed at concentrations close to ambient levels. The GasFinder3-OP (GF3) device for open-path CH4 measurements is the latest version of the commercial GasFinder systems by Boreal Laser Inc. We investigated the uncertainty of six GF3 devices from side-by-side intercomparison measurements and comparisons to a closed-path quantum cascade laser device. The comparisons were made at near-ambient levels of CH4 (85 % of measurements below 2.5 ppm) with occasional phases of elevated concentrations (max. 8.3 ppm). Relative biases as high as 8.3 % were found, and a precision for half-hourly data between 2.1 and 10.6 ppm-m (half width of the 95 % confidence interval) was estimated. These results deviate from the respective manufacturer specifications of 2 % and 0.5 ppm-m. Intercalibration of the GF3 devices by linear regression to remove measurement bias was shown to be of limited value due to drifts and step changes in the recorded GF3 concentrations.

Emissions from agricultural sources substantially contribute to global warming. The inverse dispersion method (IDM) has been successfully used for emission measurements from various agricultural sources. The IDM has also been validated in multiple studies with artificial gas releases mostly in open fields. Release experiments from buildings have rarely been conducted and were partly affected by additional nearby sources of the target gas. Specific release studies for naturally ventilated animal housings are lacking. In this study, a known and predefined amount of methane (CH 4) was released from an artificial source inside a barn that mimicked a naturally ventilated dairy housing, and IDM recovery rates, using a backward Lagrangian stochastic (bLS) model, were determined. For concentration measurements, open-path devices (OPs) with a path length of 110 m were placed in a downwind direction of the barn at fetches of 2.0 h , 5.3 h , 8.6 h , and 12 h (h equals the height of the highest obstacle), and a 3D ultrasonic anemometer (UA) was placed in the middle of the first three OP paths. Upwind of the barn, an additional OP and a UA were installed. The median IDM recovery rates determined with the UA placed upwind of the barn and the downwind OP ranged between 0.55–0.75. It is concluded that, for the present study case, the effect of the building and a tree in the main wind axis led to a systematic underestimation of the IDM-derived emission rate probably due to deviations in the wind field and turbulent dispersion from the underlying assumptions of the used dispersion model. [ABSTRACT FROM AUTHOR]

Synovial sarcoma (SyS) is an aggressive neoplasm driven by the SS18-SSX fusion, and is characterized by low T cell infiltration. Here, we studied the cancer-immune interplay in SyS using an integrative approach that combines single-cell RNA sequencing (scRNA-seq), spatial profiling and genetic and pharmacological perturbations. scRNA-seq of 16,872 cells from 12 human SyS tumors uncovered a malignant subpopulation that marks immune-deprived niches in situ and is predictive of poor clinical outcomes in two independent cohorts. Functional analyses revealed that this malignant cell state is controlled by the SS18-SSX fusion, is repressed by cytokines secreted by macrophages and T cells, and can be synergistically targeted with a combination of HDAC and CDK4/CDK6 inhibitors. This drug combination enhanced malignant-cell immunogenicity in SyS models, leading to induced T cell reactivity and T cell-mediated killing. Our study provides a blueprint for investigating heterogeneity in fusion-driven malignancies and demonstrates an interplay between immune evasion and oncogenic processes that can be co-targeted in SyS and potentially in other malignancies. Single-cell transcriptional profiling of primary human synovial sarcoma tumors suggests that combinatorial treatment with HDAC and CDK4/CDK6 inhibitors could enhance tumor immunogenicity., Author(s): Livnat Jerby-Arnon [sup.1] [sup.2] [sup.3] [sup.4] , Cyril Neftel [sup.3] [sup.4] [sup.5] [sup.6] , Marni E. Shore [sup.3] [sup.4] [sup.5] , Hannah R. Weisman [sup.3] [sup.4] [sup.5] , Nathan [...]

The impact of atmospheric reactive nitrogen (Nr) deposition on carbon (C) sequestration in soils and biomass of unfertilized, natural, semi-natural and forest ecosystems has been much debated. Many previous results of this dC∕dN response were based on changes in carbon stocks from periodical soil and ecosystem inventories, associated with estimates of Nr deposition obtained from large-scale chemical transport models. This study and a companion paper (Flechard et al., 2020) strive to reduce uncertainties of N effects on C sequestration by linking multi-annual gross and net ecosystem productivity estimates from 40 eddy covariance flux towers across Europe to local measurement-based estimates of dry and wet Nr deposition from a dedicated collocated monitoring network. To identify possible ecological drivers and processes affecting the interplay between C and Nr inputs and losses, these data were also combined with in situ flux measurements of NO, N2O and CH4 fluxes; soil NO3- leaching sampling; and results of soil incubation experiments for N and greenhouse gas (GHG) emissions, as well as surveys of available data from online databases and from the literature, together with forest ecosystem (BASFOR) modelling. Multi-year averages of net ecosystem productivity (NEP) in forests ranged from −70 to 826 g C m−2 yr−1 at total wet + dry inorganic Nr deposition rates (Ndep) of 0.3 to 4.3 g N m−2 yr−1 and from −4 to 361 g C m−2 yr−1 at Ndep rates of 0.1 to 3.1 g N m−2 yr−1 in short semi-natural vegetation (moorlands, wetlands and unfertilized extensively managed grasslands). The GHG budgets of the forests were strongly dominated by CO2 exchange, while CH4 and N2O exchange comprised a larger proportion of the GHG balance in short semi-natural vegetation. Uncertainties in elemental budgets were much larger for nitrogen than carbon, especially at sites with elevated Ndep where Nr leaching losses were also very large, and compounded by the lack of reliable data on organic nitrogen and N2 losses by denitrification. Nitrogen losses in the form of NO, N2O and especially NO3- were on average 27 % (range 6 %–54 %) of Ndep at sites with Ndep −2 yr−1 versus 65 % (range 35 %–85 %) for Ndep > 3 g N m−2 yr−1. Such large levels of Nr loss likely indicate that different stages of N saturation occurred at a number of sites. The joint analysis of the C and N budgets provided further hints that N saturation could be detected in altered patterns of forest growth. Net ecosystem productivity increased with Nr deposition up to 2–2.5 g N m−2 yr−1, with large scatter associated with a wide range in carbon sequestration efficiency (CSE, defined as the NEP ∕ GPP ratio). At elevated Ndep levels (> 2.5 g N m−2 yr−1), where inorganic Nr losses were also increasingly large, NEP levelled off and then decreased. The apparent increase in NEP at low to intermediate Ndep levels was partly the result of geographical cross-correlations between Ndep and climate, indicating that the actual mean dC∕dN response at individual sites was significantly lower than would be suggested by a simple, straightforward regression of NEP vs. Ndep.

The effects of atmospheric nitrogen deposition (Ndep) on carbon (C) sequestration in forests have often been assessed by relating differences in productivity to spatial variations of Ndep across a large geographic domain. These correlations generally suffer from covariation of other confounding variables related to climate and other growth-limiting factors, as well as large uncertainties in total (dry + wet) reactive nitrogen (Nr) deposition. We propose a methodology for untangling the effects of Ndep from those of meteorological variables, soil water retention capacity and stand age, using a mechanistic forest growth model in combination with eddy covariance CO2 exchange fluxes from a Europe-wide network of 22 forest flux towers. Total Nr deposition rates were estimated from local measurements as far as possible. The forest data were compared with data from natural or semi-natural, non-woody vegetation sites. The response of forest net ecosystem productivity to nitrogen deposition (dNEP ∕ dNdep) was estimated after accounting for the effects on gross primary productivity (GPP) of the co-correlates by means of a meta-modelling standardization procedure, which resulted in a reduction by a factor of about 2 of the uncorrected, apparent dGPP ∕ dNdep value. This model-enhanced analysis of the C and Ndep flux observations at the scale of the European network suggests a mean overall dNEP ∕ dNdep response of forest lifetime C sequestration to Ndep of the order of 40–50 g C per g N, which is slightly larger but not significantly different from the range of estimates published in the most recent reviews. Importantly, patterns of gross primary and net ecosystem productivity versus Ndep were non-linear, with no further growth responses at high Ndep levels (Ndep > 2.5–3 g N m−2 yr−1) but accompanied by increasingly large ecosystem N losses by leaching and gaseous emissions. The reduced increase in productivity per unit N deposited at high Ndep levels implies that the forecast increased Nr emissions and increased Ndep levels in large areas of Asia may not positively impact the continent's forest CO2 sink. The large level of unexplained variability in observed carbon sequestration efficiency (CSE) across sites further adds to the uncertainty in the dC∕dN response.

Methanol is the second most abundant volatile organic compound in the troposphere and plays a significant role in atmospheric chemistry. While there is consensus about the dominant role of living plants as the major source and the reaction with OH as the major sink of methanol, global methanol budgets diverge considerably in terms of source/sink estimates reflecting uncertainties in the approaches used to model, and the empirical data used to separately constrain these terms. Here we compiled micrometeorological methanol flux data from eight different study sites and reviewed the corresponding literature in order to provide a first cross-site synthesis of the terrestrial ecosystem-scale methanol exchange and present an independent data-driven view of the land-atmosphere methanol exchange. Our study shows that the controls of plant growth on the production, and thus the methanol emission magnitude, and stomatal conductance on the hourly methanol emission variability, established at the leaf level, hold across sites at the ecosystem-level. Unequivocal evidence for bi-directional methanol exchange at the ecosystem scale is presented. Deposition, which at some sites even exceeds methanol emissions, represents an emerging feature of ecosystem-scale measurements and is likely related to environmental factors favouring the formation of surface wetness. Methanol may adsorb to or dissolve in this surface water and eventually be chemically or biologically removed from it. Management activities in agriculture and forestry are shown to increase local methanol emission by orders of magnitude; they are however neglected at present in global budgets. While contemporary net land methanol budgets are overall consistent with the grand mean of the micrometeorological methanol flux measurements, we caution that the present approach of simulating methanol emission and deposition separately is prone to opposing systematic errors and does not allow taking full advantage of the rich information content of micrometeorological flux measurements.

Ammonia (NH3) fluxes were estimated from a field being grazed by dairy cattle during spring by applying a backward Lagrangian stochastic model (bLS) model combined with horizontal concentration gradients measured across the field. Continuous concentration measurements at field boundaries were made by open-path miniDOAS (differential optical absorption spectroscopy) instruments while the cattle were present and for 6 subsequent days. The deposition of emitted NH3 to clean patches on the field was also simulated, allowing both net and gross emission estimates, where the dry deposition velocity (vd) was predicted by a canopy resistance (Rc) model developed from local NH3 flux and meteorological measurements. Estimated emissions peaked during grazing and decreased after the cattle had left the field, while control on emissions was observed from covariance with temperature, wind speed and humidity and wetness measurements made on the field, revealing a diurnal emission profile. Large concentration differences were observed between downwind receptors, due to spatially heterogeneous emission patterns. This was likely caused by uneven cattle distribution and a low grazing density, where hotspots of emissions would arise as the cattle grouped in certain areas, such as around the water trough. The spatial complexity was accounted for by separating the model source area into sub-sections and optimising individual source area coefficients to measured concentrations. The background concentration was the greatest source of uncertainty, and based on a sensitivity/uncertainty analysis the overall uncertainty associated with derived emission factors from this study is at least 30–40 %.Emission factors can be expressed as 6 ± 2 g NH3 cow−1 day−1, or 9 ± 3 % of excreted urine-N emitted as NH3, when deposition is not simulated and 7 ± 2 g NH3 cow−1 day−1, or 10 ± 3 % of excreted urine-N emitted as NH3, when deposition is included in the gross emission model. The results suggest that around 14 ± 4 % of emitted NH3 was deposited to patches within the field that were not affected by urine or dung.

Large variability in N2O emissions from managed grasslands may occur because most emissions originate in surface litter or near-surface soil where variability in soil water content (θ) and temperature (Ts) is greatest. To determine whether temporal variability in θ and Ts of surface litter and near-surface soil could explain this in N2O emissions, a simulation experiment was conducted with ecosys, a comprehensive mathematical model of terrestrial ecosystems in which processes governing N2O emissions were represented at high temporal and spatial resolution. Model performance was verified by comparing N2O emissions, CO2 and energy exchange, and θ and Ts modelled by ecosys with those measured by automated chambers, eddy covariance (EC) and soil sensors on an hourly timescale during several emission events from 2004 to 2009 in an intensively managed pasture at Oensingen, Switzerland. Both modelled and measured events were induced by precipitation following harvesting and subsequent fertilizing or manuring. These events were brief (2–5 days) with maximum N2O effluxes that varied from Nm−2h−1 in early spring and autumn to > 3 mgNm−2h−1 in summer. Only very small emissions were modelled or measured outside these events. In the model, emissions were generated almost entirely in surface litter or near-surface (0–2 cm) soil, at rates driven by N availability with fertilization vs. N uptake with grassland regrowth and by O2 supply controlled by litter and soil wetting relative to O2 demand from microbial respiration. In the model, NOx availability relative to O2 limitation governed both the reduction of more oxidized electron acceptors to N2O and the reduction of N2O to N2, so that the magnitude of N2O emissions was not simply related to surface and near-surface θ and Ts. Modelled N2O emissions were found to be sensitive to defoliation intensity and timing which controlled plant N uptake and soil θ and Ts prior to and during emission events. Reducing leaf area index (LAI) remaining after defoliation to half that under current practice and delaying harvesting by 5 days raised modelled N2O emissions by as much as 80 % during subsequent events and by an average of 43 % annually. Modelled N2O emissions were also found to be sensitive to surface soil properties. Increasing near-surface bulk density by 10 % raised N2O emissions by as much as 100 % during emission events and by an average of 23 % annually. Relatively small spatial variation in management practices and soil surface properties could therefore cause the large spatial variation in N2O emissions commonly found in field studies. The global warming potential from annual N2O emissions in this intensively managed grassland largely offset those from net C uptake in both modelled and field experiments. However, model results indicated that this offset could be adversely affected by suboptimal land management and soil properties.

We present a differential optical absorption spectroscopy (DOAS) instrument, called "miniDOAS", optimised for optical open-path field-measurements of ambient ammonia (NH3) alongside nitrogen oxide (NO) and sulfur dioxide (SO2). The instrument is a further development of the miniDOAS presented by Volten et al. (2012). We use a temperature-controlled spectrometer, a deuterium light source and a modified optical arrangement. The system was set up in a robust, field-deployable, temperature-regulated housing. For the evaluation of light spectra we use a new high-pass filter routine based upon robust baseline extraction with local regression. Multiple linear regression including terms of an autoregressive–moving-average model is used to determine concentrations. For NH3 the random uncertainty is about 1.4 % of the concentration, and not better than 0.2 µg m−3. Potential biases for the slope of the calibration are given by the precision of the differential absorption cross sections (±3 %) and for the offset by the precision of the estimation of concentration offsets (cref) introduced by the reference spectrum Iref. Comparisons of miniDOAS measurements to those by NH3 acid trap devices showed good agreement. The miniDOAS can be flexibly used for a wide range of field trials, such as micrometeorological NH3 flux measurements with approaches based upon horizontal or vertical concentration differences. Results from such applications covering concentration dynamics of less than one up to several hundreds of µg m−3 are presented.

Carbon (C) sequestration in the soil is considered as a potential important mechanism to mitigate greenhouse gas (GHG) emissions of the agricultural sector. It can be quantified by the net ecosystem carbon budget (NECB) describing the change of soil C as the sum of all relevant import and export fluxes. NECB was investigated here in detail for an intensively grazed dairy pasture in Switzerland. Two budget approaches with different system boundaries were applied: NECBtot for system boundaries including the grazing cows and NECBpast for system boundaries excluding the cows. CO2 and CH4 exchange induced by soil/vegetation processes as well as direct emissions by the animals were derived from eddy covariance measurements. Other C fluxes were either measured (milk yield, concentrate feeding) or derived based on animal performance data (intake, excreta). For the investigated year, both approaches resulted in a small near-neutral C budget: NECBtot −27 ± 62 and NECBpast 23 ± 76 g C m−2 yr−1. The considerable uncertainties, depending on the approach, were mainly due to errors in the CO2 exchange or in the animal-related fluxes. The comparison of the NECB results with the annual exchange of other GHG revealed CH4 emissions from the cows to be the major contributor in terms of CO2 equivalents, but with much lower uncertainty compared to NECB. Although only 1 year of data limit the representativeness of the carbon budget results, they demonstrate the important contribution of the non-CO2 fluxes depending on the chosen system boundaries and the effect of their propagated uncertainty in an exemplary way. The simultaneous application and comparison of both NECB approaches provides a useful consistency check for the carbon budget determination and can help to identify and eliminate systematic errors.

Biochar, a carbon-rich, porous pyrolysis product of organic residues may positively affect plant yield and can, owing to its inherent stability, promote soil carbon sequestration when amended to agricultural soils. Another possible effect of biochar is the reduction in emissions of nitrous oxide (N2O). A number of laboratory incubations have shown significantly reduced N2O emissions from soil when mixed with biochar. Emission measurements under field conditions however are more scarce and show weaker or no reductions, or even increases in N2O emissions. One of the hypothesised mechanisms for reduced N2O emissions from soil is owing to the increase in soil pH following the application of alkaline biochar. To test the effect of biochar on N2O emissions in a temperate maize cropping system, we set up a field trial with a 20t ha−1 biochar treatment, a limestone treatment adjusted to the same pH as the biochar treatment (pH 6.5), and a control treatment without any addition (pH 6.1). An automated static chamber system measured N2O emissions for each replicate plot (n = 3) every 3.6 h over the course of 8 months. The field was conventionally fertilised at a rate of 160 kg N ha−1 in three applications of 40, 80 and 40 kg N ha−1 as ammonium nitrate. Cumulative N2O emissions were 52 % smaller in the biochar compared to the control treatment. However, the effect of the treatments overall was not statistically significant (p = 0.27) because of the large variability in the data set. Limed soils emitted similar mean cumulative amounts of N2O as the control. There is no evidence that reduced N2O emissions with biochar relative to the control is solely caused by a higher soil pH.

Methanol is the second most abundant volatile organic compound in the troposphere and plays a significant role in atmospheric chemistry. While there is consensus about the dominant role of living plants as the major source and the reaction with OH as the major sink of methanol, global methanol budgets diverge considerably in terms of source/sink estimates, reflecting uncertainties in the approaches used to model and the empirical data used to separately constrain these terms. Here we compiled micrometeorological methanol flux data from eight different study sites and reviewed the corresponding literature in order to provide a first cross-site synthesis of the terrestrial ecosystem-scale methanol exchange and present an independent data-driven view of the land–atmosphere methanol exchange. Our study shows that the controls of plant growth on production, and thus the methanol emission magnitude, as well as stomatal conductance on the hourly methanol emission variability, established at the leaf level, hold across sites at the ecosystem level. Unequivocal evidence for bi-directional methanol exchange at the ecosystem scale is presented. Deposition, which at some sites even exceeds methanol emissions, represents an emerging feature of ecosystem-scale measurements and is likely related to environmental factors favouring the formation of surface wetness. Methanol may adsorb to or dissolve in this surface water and eventually be chemically or biologically removed from it. Management activities in agriculture and forestry are shown to increase local methanol emission by orders of magnitude; however, they are neglected at present in global budgets. While contemporary net land methanol budgets are overall consistent with the grand mean of the micrometeorological methanol flux measurements, we caution that the present approach of simulating methanol emission and deposition separately is prone to opposing systematic errors and does not allow for full advantage to be taken of the rich information content of micrometeorological flux measurements.

In this article we summarise recent science which shows how airborne amines, specifically methylamines (MAs), play a key role in new atmospheric particle formation (NPF) by stabilising small molecule clusters. Agricultural emissions are assumed to constitute the most important MA source, but given the short atmospheric residence time of MAs, they can hardly have a direct impact on NPF events observed in remote regions. This leads us to the presentation of existing knowledge focussing on natural vegetation-related MA sources. High MA contents as well as emissions by plants was already described in the 19th century. Strong MA emissions predominantly occur during flowering as part of a pollination strategy. The behaviour is species-specific, but examples of such species are common and widespread. In addition, vegetative plant tissue exhibiting high amounts of MAs might potentially lead to significant emissions. The decomposition of organic material constitutes another, potentially ubiquitous, source of airborne MAs. These mechanisms would provide sources, which could be crucial for the amine's role in NPF, especially in remote regions. Knowledge about vegetation-related amine emissions is, however, very limited, and thus it is also an open question how global change and the intensified cycling of reactive nitrogen over the last 200 years have altered amine emissions from vegetation with a corresponding effect on NPF.

Methane (CH4) from ruminants contributes one-third of global agricultural greenhouse gas emissions. Eddy covariance (EC) technique has been extensively used at various flux sites to investigate carbon dioxide exchange of ecosystems. Since the development of fast CH4 analyzers, the instrumentation at many flux sites has been amended for these gases. However, the application of EC over pastures is challenging due to the spatially and temporally uneven distribution of CH4 point sources induced by the grazing animals. We applied EC measurements during one grazing season over a pasture with 20 dairy cows (mean milk yield: 22.7 kg d−1) managed in a rotational grazing system. Individual cow positions were recorded by GPS trackers to attribute fluxes to animal emissions using a footprint model. Methane fluxes with cows in the footprint were up to 2 orders of magnitude higher than ecosystem fluxes without cows. Mean cow emissions of 423 ± 24 g CH4 head−1 d−1 (best estimate from this study) correspond well to animal respiration chamber measurements reported in the literature. However, a systematic effect of the distance between source and EC tower on cow emissions was found, which is attributed to the analytical footprint model used. We show that the EC method allows one to determine CH4 emissions of cows on a pasture if the data evaluation is adjusted for this purpose and if some cow distribution information is available.

Degradation of plant material by animals is an important transformation pathway in the nitrogen (N) cycle. During the involved processes, volatile reduced alkaline nitrogen compounds, mainly ammonia (NH3) and aliphatic amines such as trimethylamine (TMA), are formed. Today, animal husbandry is estimated to constitute a main source of aliphatic amines in the atmosphere with TMA being the main emitted compound. Here, we show how the interaction between faeces and urine in animal production systems provides the primary source for agricultural TMA emissions. Excreted urine contains large quantities of urea and TMA-N-oxide, which are transformed into NH3 and TMA, respectively, via enzymatic processes provided by microbes present in faeces. TMA emissions from areas polluted with urine–faeces mixtures are on average of the order of 10 to 50 nmol m−2s−1. Released amines promote secondary aerosol particle formation in the agricultural emission plume. The atmospheric lifetime of TMA, which was estimated to be of the order of 30 to 1000 s, is determined by the condensation onto aerosol particles.

The (net) exchange of reactive nitrogen (Nr) with the atmosphere is an important driver for ecosystem productivity and greenhouse gas exchange. The exchange of airborne Nr includes various trace compounds that usually require different specific measurement techniques, and up to now fast response instruments suitable for eddy covariance measurements are only available for few of these compounds. Here we present eddy covariance flux measurements with a recently introduced converter (TRANC) for the sum of all Nr compounds (∑Nr). Measurements were performed over a managed grassland field with phases of net emission and net deposition of ∑Nr and alternating dominance of oxidized (NOX) and reduced species (NH3). Spectral analysis of the eddy covariance data exhibited the existence of covariance function peaks at a reasonable time lag related to the sampling tube residence time under stationary conditions. Using ogive analysis, the high-frequency damping was quantified to 19%–26% for a low measurement height of 1.2 m and to about 10% for 4.8 m measurement height. ∑Nr concentrations and fluxes were compared to parallel NO and NO2 measurements by dynamic chambers and NH3 measurements by the aerodynamic gradient technique. The average concentration results indicate that the main compounds NO2 and NH3 were converted by the TRANC system with an efficiency of near 100%. With an optimised sample inlet also the fluxes of these compounds were recovered reasonably well including net deposition and net emission phases. The study shows that the TRANC system is suitable for fast response measurements of oxidized and reduced nitrogen compounds and can be used for continuous eddy covariance flux measurements of total reactive nitrogen.