19 results on '"Nc-Iuphar"'
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2. The IUPHAR/BPS Guide to PHARMACOLOGY in 2018: updates and expansion to encompass the new guide to IMMUNOPHARMACOLOGY.
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Simon D. Harding, Joanna L. Sharman, Elena Faccenda, Christopher Southan, Adam J. Pawson, Sam M. Ireland, Alasdair J. G. Gray, Liam Bruce, Stephen P. H. Alexander, Stephen Anderton, Clare Bryant, Anthony P. Davenport, Christian Doerig, Doriano Fabbro, Francesca Levi-Schaffer, Michael Spedding, Jamie A. Davies, and NC-IUPHAR
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- 2018
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3. The IUPHAR/BPS Guide to PHARMACOLOGY in 2016: towards curated quantitative interactions between 1300 protein targets and 6000 ligands.
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Christopher Southan, Joanna L. Sharman, Helen E. Benson, Elena Faccenda, Adam J. Pawson, Stephen P. H. Alexander, Oscar Peter Buneman, Anthony P. Davenport, John C. McGrath, John A. Peters, Michael Spedding, William A. Catterall, Doriano Fabbro, Jamie A. Davies, and NC-IUPHAR
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- 2016
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4. The IUPHAR/BPS Guide to PHARMACOLOGY: an expert-driven knowledgebase of drug targets and their ligands.
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Adam J. Pawson, Joanna L. Sharman, Helen E. Benson, Elena Faccenda, Stephen P. H. Alexander, Oscar Peter Buneman, Anthony P. Davenport, John C. McGrath, John A. Peters, Christopher Southan, Michael Spedding, Wenyuan Yu, Anthony J. Harmar, and NC-IUPHAR
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- 2014
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5. IUPHAR-DB: updated database content and new features.
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Joanna L. Sharman, Helen E. Benson, Adam J. Pawson, Veny Lukito, Chidochangu P. Mpamhanga, Vincent Bombail, Anthony P. Davenport, John A. Peters, Michael Spedding, Anthony J. Harmar, and NC-IUPHAR
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- 2013
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6. The IUPHAR/BPS Guide to PHARMACOLOGY in 2022: curating pharmacology for COVID-19, malaria and antibacterials
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Jane F. Armstrong, Nc-Iuphar, Michael Spedding, Christopher Southan, Stephen P.H. Alexander, Jamie A. Davies, Adam J. Pawson, Simon D. Harding, Elena Faccenda, Anthony P. Davenport, Davenport, Anthony [0000-0002-2096-3117], and Apollo - University of Cambridge Repository
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Coronavirus disease 2019 (COVID-19) ,AcademicSubjects/SCI00010 ,Databases, Pharmaceutical ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Population ,MEDLINE ,Pharmacology ,Biology ,Ligands ,Antiviral Agents ,Antimalarials ,User-Computer Interface ,Viral Proteins ,Pandemic ,Genetics ,medicine ,Global health ,Database Issue ,Humans ,In patient ,education ,Data Curation ,education.field_of_study ,COVID-19 ,medicine.disease ,Anti-Bacterial Agents ,Malaria ,COVID-19 Drug Treatment - Abstract
The IUPHAR/BPS Guide to PHARMACOLOGY (GtoPdb; https://www.guidetopharmacology.org) is an open-access, expert-curated database of molecular interactions between ligands and their targets. We describe expansion in content over nine database releases made during the last two years, which has focussed on three main areas of infection. The COVID-19 pandemic continues to have a major impact on health worldwide. GtoPdb has sought to support the wider research community to understand the pharmacology of emerging drug targets for SARS-CoV-2 as well as potential targets in the host to block viral entry and reduce the adverse effects of infection in patients with COVID-19. We describe how the database rapidly evolved to include a new family of Coronavirus proteins. Malaria remains a global threat to half the population of the world. Our database content continues to be enhanced through our collaboration with Medicines for Malaria Venture (MMV) on the IUPHAR/MMV Guide to MALARIA PHARMACOLOGY (https://www.guidetomalariapharmacology.org). Antibiotic resistance is also a growing threat to global health. In response, we have extended our coverage of antibacterials in partnership with AntibioticDB., I am a contributing author. Open Access CC-BY is funded by the University of Edinburgh Wellcome Trust Institutional Strategic Support Fund. The manuscript has a statement: For the purpose of open access, the author has applied a CC BY public copyright licence to any Author Accepted Manuscript version arising from this submission.
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- 2021
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7. IUPHAR-DB: updated database content and new features
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Sharman, Joanna L., Benson, Helen E., Pawson, Adam J., Lukito, Veny, Mpamhanga, Chidochangu P., Bombail, Vincent, Davenport, Anthony P., Peters, John A., Spedding, Michael, Harmar, Anthony J., and NC-IUPHAR
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- 2013
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8. The IUPHAR/BPS Guide to PHARMACOLOGY in 2020: extending immunopharmacology content and introducing the IUPHAR/MMV Guide to MALARIA PHARMACOLOGY
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Nc-Iuphar, David R. Cavanagh, Michael Spedding, Adam J. Pawson, Jamie A. Davies, Anthony P. Davenport, Jane F. Armstrong, Elena Faccenda, Christopher Southan, Simon D. Harding, Joanna L. Sharman, Brice Campo, and Stephen P.H. Alexander
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Plasmodium ,Databases, Factual ,Databases, Pharmaceutical ,Web Browser ,Pharmacology ,Biology ,Ligands ,Antimalarials ,User-Computer Interface ,03 medical and health sciences ,0302 clinical medicine ,Drug Discovery ,Genetics ,medicine ,Database Issue ,Humans ,Molecular Targeted Therapy ,030304 developmental biology ,0303 health sciences ,Web browser ,Molecular interactions ,Drug discovery ,medicine.disease ,Immunopharmacology ,Malaria ,3. Good health ,Molecular targets ,Software ,030217 neurology & neurosurgery - Abstract
The IUPHAR/BPS Guide to PHARMACOLOGY (www.guidetopharmacology.org) is an open-access, expert-curated database of molecular interactions between ligands and their targets. We describe significant updates made over the seven releases during the last two years. The database is notably enhanced through the continued linking of relevant pharmacology with key immunological data types as part of the IUPHAR Guide to IMMUNOPHARMACOLOGY (www.guidetoimmunopharmacology.org) and by a major new extension, the IUPHAR/MMV Guide to Malaria PHARMACOLOGY (www.guidetomalariapharmacology.org). The latter has been constructed in partnership with the Medicines for Malaria Venture, an organization dedicated to identifying, developing and delivering new antimalarial therapies that are both effective and affordable. This is in response to the global challenge of over 200 million cases of malaria and 400 000 deaths worldwide, with the majority in the WHO Africa Region. It provides new pharmacological content, including molecular targets in the malaria parasite, interaction data for ligands with antimalarial activity, and establishes curation of data from screening assays, used routinely in antimalarial drug discovery, against the whole organism. A dedicated portal has been developed to provide quick and focused access to these new data.
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- 2019
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9. Accessing expert-curated pharmacological data in the IUPHAR/BPS Guide to PHARMACOLOGY:Guide to PHARMACOLOGY and Guide to IMMUNOPHARMACOLOGY
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Joanna L. Sharman, Simon D. Harding, Christopher Southan, Adam J. Pawson, Jamie A. Davies, Elena Faccenda, and Nc-Iuphar
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0301 basic medicine ,Computer science ,Drug target ,Drug classification ,General Medicine ,Pharmacology ,computer.software_genre ,Immunopharmacology ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Web service ,computer ,030217 neurology & neurosurgery - Abstract
The IUPHAR/BPS Guide to PHARMACOLOGY is an expert-curated, open-access database of information on drug targets and the substances that act on them. This unit describes the procedures for searching and downloading ligand-target binding data and for finding detailed annotations and the most relevant literature. The database includes concise overviews of the properties of 1,700 data-supported human drug targets and related proteins, divided into families, and 9,000 small molecule and peptide experimental ligands and approved drugs that bind to those targets. More detailed descriptions of pharmacology, function, and pathophysiology are provided for a subset of important targets. The information is reviewed regularly by expert subcommittees of the IUPHAR Committee on Receptor Nomenclature and Drug Classification. A new immunopharmacology portal has recently been added, drawing together data on immunological targets, ligands, cell types, processes and diseases. The data are available for download and can be accessed computationally via Web services. © 2018 by John Wiley & Sons, Inc.
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- 2018
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10. The IUPHAR/BPS Guide to PHARMACOLOGY in 2018: updates and expansion to encompass the new guide to IMMUNOPHARMACOLOGY
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Harding, Simon D, Sharman, Joanna L, Faccenda, Elena, Southan, Chris, Pawson, Adam J, Ireland, Sam, Gray, Alasdair JG, Bruce, Liam, Alexander, Stephen PH, Anderton, Stephen, Bryant, Clare, Davenport, Anthony P, Doerig, Christian, Fabbro, Doriano, Levi-Schaffer, Francesca, Spedding, Michael, Davies, Jamie A, NC-IUPHAR, Bryant, Clare [0000-0002-2924-0038], Davenport, Anthony [0000-0002-2096-3117], and Apollo - University of Cambridge Repository
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Pharmacology ,Immune System Phenomena ,Immune System Diseases ,Databases, Pharmaceutical ,Immune System ,Animals ,Humans ,Proteins ,Ligands - Abstract
The IUPHAR/BPS Guide to PHARMACOLOGY (GtoPdb, www.guidetopharmacology.org) and its precursor IUPHAR-DB, have captured expert-curated interactions between targets and ligands from selected papers in pharmacology and drug discovery since 2003. This resource continues to be developed in conjunction with the International Union of Basic and Clinical Pharmacology (IUPHAR) and the British Pharmacological Society (BPS). As previously described, our unique model of content selection and quality control is based on 96 target-class subcommittees comprising 512 scientists collaborating with in-house curators. This update describes content expansion, new features and interoperability improvements introduced in the 10 releases since August 2015. Our relationship matrix now describes ∼9000 ligands, ∼15 000 binding constants, ∼6000 papers and ∼1700 human proteins. As an important addition, we also introduce our newly funded project for the Guide to IMMUNOPHARMACOLOGY (GtoImmuPdb, www.guidetoimmunopharmacology.org). This has been ‘forked’ from the well-established GtoPdb data model and expanded into new types of data related to the immune system and inflammatory processes. This includes new ligands, targets, pathways, cell types and diseases for which we are recruiting new IUPHAR expert committees. Designed as an immunopharmacological gateway, it also has an emphasis on potential therapeutic interventions.
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- 2018
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11. The IUPHAR/BPS Guide to PHARMACOLOGY in 2020: extending immunopharmacology content and introducing the IUPHAR/MMV Guide to MALARIA PHARMACOLOGY.
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Armstrong, Jane F, Faccenda, Elena, Harding, Simon D, Pawson, Adam J, Southan, Christopher, Sharman, Joanna L, Campo, Brice, Cavanagh, David R, Alexander, Stephen P H, Davenport, Anthony P, Spedding, Michael, Davies, Jamie A, and NC-IUPHAR
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- 2020
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12. The IUPHAR/BPS Guide to PHARMACOLOGY: an expert-driven knowledgebase of drug targets and their ligands
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Joanna L. Sharman, John A. Peters, Wenyuan Yu, Nc-Iuphar, Anthony P. Davenport, John C. McGrath, Stephen P.H. Alexander, Anthony J. Harmar, Christopher Southan, Michael Spedding, Elena Faccenda, Helen E. Benson, Adam J. Pawson, and Peter Buneman
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Internet ,Clinical pharmacology ,Drug discovery ,Knowledge Bases ,Proteins ,Biology ,Pharmacology ,Ligands ,chEMBL ,Compendium ,3. Good health ,law.invention ,VI. Genomic variation, diseases and drugs ,Pharmaceutical Preparations ,law ,Drug Discovery ,Genetics ,Ensembl ,UniProt ,DrugBank ,Databases, Chemical ,PubChem - Abstract
The International Union of Basic and Clinical Pharmacology/British Pharmacological Society (IUPHAR/BPS) Guide to PHARMACOLOGY (http://www.guidetopharmacology.org) is a new open access resource providing pharmacological, chemical, genetic, functional and pathophysiological data on the targets of approved and experimental drugs. Created under the auspices of the IUPHAR and the BPS, the portal provides concise, peer-reviewed overviews of the key properties of a wide range of established and potential drug targets, with in-depth information for a subset of important targets. The resource is the result of curation and integration of data from the IUPHAR Database (IUPHAR-DB) and the published BPS 'Guide to Receptors and Channels' (GRAC) compendium. The data are derived from a global network of expert contributors, and the information is extensively linked to relevant databases, including ChEMBL, DrugBank, Ensembl, PubChem, UniProt and PubMed. Each of the approximately 6000 small molecule and peptide ligands is annotated with manually curated 2D chemical structures or amino acid sequences, nomenclature and database links. Future expansion of the resource will complete the coverage of all the targets of currently approved drugs and future candidate targets, alongside educational resources to guide scientists and students in pharmacological principles and techniques
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- 2013
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13. How to use the IUPHAR receptor database to navigate pharmacological data
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Mpamhanga CP Sharman JL Harmar AJ & the NC-IUPHAR team
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Today's data intensive interdisciplinary research challenges scientists to keep up to date with key experimental techniques and tools reported in the literature. The International Union of Basic and Clinical Pharmacology Database (IUPHAR DB) goes some way to addressing this need by providing expert curated information sourced from primary literature and displayed in a user friendly manner online. The database provides a channel for the IUPHAR Nomenclature Committee (NC IUPHAR) to provide recommendations on the nomenclature of receptors and ion channels to document their properties and the ligands that are useful for receptor characterization. Here we describe IUPHAR DB's main features and provide examples of techniques for navigating and exploring the information. The database is freely available online at http://www.iuphar db.org/.
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- 2012
14. IUPHAR-DB: updated database content and new features
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Adam J. Pawson, Anthony J. Harmar, Anthony P. Davenport, Helen E. Benson, Nc-Iuphar, Veny Lukito, Vincent Bombail, Michael Spedding, Joanna L. Sharman, John A. Peters, Chidochangu P. Mpamhanga, Sharman, Joanna L, Benson, Helen E, Pawson, Adam J, University of Edinburgh, University of Cambridge [UK] (CAM), University of Dundee, SERVIER, and The Wellcome Trust (Biomedical Resources Grant 099156/Z/12/Z)
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receptor ,Receptors, Cytoplasmic and Nuclear ,Biology ,computer.software_genre ,Ligands ,Ion Channels ,Receptors, G-Protein-Coupled ,03 medical and health sciences ,Lanosterol ,Mice ,0302 clinical medicine ,Genetics ,Animals ,Humans ,Enzyme Inhibitors ,Receptor ,Peptide sequence ,database ,030304 developmental biology ,G protein-coupled receptor ,0303 health sciences ,Internet ,Database ,Data curation ,Online database ,Neurosciences ,Molecular Sequence Annotation ,Articles ,bioinformatics ,Small molecule ,3. Good health ,Enzymes ,Rats ,pharmacology ,Biochemistry ,Pharmaceutical Preparations ,Neurons and Cognition ,Ligand-gated ion channel ,[SDV.NEU]Life Sciences [q-bio]/Neurons and Cognition [q-bio.NC] ,Peptides ,computer ,030217 neurology & neurosurgery ,Databases, Chemical - Abstract
International audience; The International Union of Basic and Clinical Pharmacology (IUPHAR) database, IUPHAR-DB (http://www.iuphar-db.org) is an open access, online database providing detailed, expert-driven annotation of the primary literature on human and rodent receptors and other drug targets, together with the substances that act on them. The present release includes information on the products of 646 genes from four major protein classes (G protein-coupled receptors, nuclear hormone receptors, voltage- and ligand-gated ion channels) and ∼3180 bioactive molecules (endogenous ligands, licensed drugs and key pharmacological tools) that interact with them. We have described previously the classification and curation of data for small molecule ligands in the database; in this update we have annotated 366 endogenous peptide ligands with their amino acid sequences, post-translational modifications, links to precursor genes, species differences and relationships with other molecules in the database (e.g. those derived from the same precursor). We have also matched targets with their endogenous ligands (peptides and small molecules), with particular attention paid to identifying bioactive peptide ligands generated by post-translational modification of precursor proteins. Other improvements to the database include enhanced information on the clinical relevance of targets and ligands in the database, more extensive links to other databases and a pilot project for the curation of enzymes as drug targets.
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- 2013
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15. IUPHAR-DB: An Expert-Curated, Peer-Reviewed Database of Receptors and Ion Channels
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Edward M. Rosser, Joanna L. Sharman, Anthony J. Harmar, Martin Jones, Valerie A. Hale, Rebecca Hills, Stuart D. Greenhill, and Nc Iuphar
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Consistency (database systems) ,Database ,Computer science ,Drug discovery ,RefSeq ,General Materials Science ,Database search engine ,computer.software_genre ,Receptor ,computer ,Gene ,Genome ,PubChem - Abstract
The International Union of Basic and Clinical Pharmacology database (IUPHAR-DB) integrates peer-reviewed pharmacological, chemical, genetic, functional and anatomical information on the 354 non-sensory G protein-coupled receptors (GPCRs), 71 ligand-gated ion channel subunits and 141 voltage-gated ion channel subunits encoded by the human, rat and mouse genomes. These genes represent the targets of about a third of currently approved drugs and are a major focus of drug discovery and development programs in the pharmaceutical industry. Individual gene pages provide a comprehensive description of the genes and their functions, with information on protein structure, ligands, expression patterns, signaling mechanisms, functional assays and biologically important receptor variants (e.g. single nucleotide polymorphisms and splice variants). The phenotypes resulting from altered gene expression (e.g. in genetically altered animals) and genetic mutations are described. Links are provided to bioinformatics resources such as NCBI RefSeq, OMIM, PubChem, human, rat and mouse genome databases. Recent developments include the addition of ligand-centered pages summarising information about unique ligand molecules in IUPHAR-DB. IUPHAR-DB represents a novel approach to biocuration because most data are provided through manual curation of published literature by a network of over 60 expert subcommittees coordinated by NC-IUPHAR. Data are referenced to the primary literature and linked to PubMed. The data are checked to ensure accuracy and consistency by the curators, added to the production server using custom-built submission tools and peer-reviewed by NC-IUPHAR, before being transferred to the public database. Data are reviewed and updated regularly (at least biennially). Other website features include comprehensive database search tools, online and downloadable gene lists and links to recent publications of interest to the field, such as reports on receptor-ligand pairings. The database is freely available at "http://www.iuphar-db.org":http://www.iuphar-db.org. Curators can be reached at curators [at] iuphar-db.org. We thank British Pharmacological Society, UNESCO (through the ICSU Grants Programme), Incyte, GlaxoSmithKline, Novartis, Servier and Wyeth for their support.
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- 2009
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16. IUPHAR-DB: An Expert-Curated, Peer-Reviewed Database of Receptors and Ion Channels
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Joanna Sharman, Valerie Hale, Rebecca Hills, Edward Rosser, Martin Jones, Stuart Greenhill, Anthony Harmar, and NC - IUPHAR
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General Materials Science - Published
- 2009
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17. The IUPHAR/BPS Guide to PHARMACOLOGY in 2016: towards curated quantitative interactions between 1300 protein targets and 6000 ligands
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Southan C, Jl, Sharman, He, Benson, Faccenda E, Aj, Pawson, Sp, Alexander, Op, Buneman, Ap, Davenport, Jc, Mcgrath, Ja, Peters, Michael Spedding, Wa, Catterall, Fabbro D, Ja, Davies, and NC-IUPHAR
18. A rational roadmap for SARS-CoV-2/COVID-19 pharmacotherapeutic research and development: IUPHAR Review 29.
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Alexander SPH, Armstrong JF, Davenport AP, Davies JA, Faccenda E, Harding SD, Levi-Schaffer F, Maguire JJ, Pawson AJ, Southan C, and Spedding M
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- Animals, Antiviral Agents pharmacology, Betacoronavirus isolation & purification, COVID-19, Coronavirus Infections virology, Drug Development, Drug Discovery, Drug Repositioning, Humans, Pandemics, Pneumonia, Viral virology, SARS-CoV-2, COVID-19 Drug Treatment, Antiviral Agents administration & dosage, Coronavirus Infections drug therapy, Pneumonia, Viral drug therapy
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In this review, we identify opportunities for drug discovery in the treatment of COVID-19 and, in so doing, provide a rational roadmap whereby pharmacology and pharmacologists can mitigate against the global pandemic. We assess the scope for targeting key host and viral targets in the mid-term, by first screening these targets against drugs already licensed, an agenda for drug repurposing, which should allow rapid translation to clinical trials. A simultaneous, multi-pronged approach using conventional drug discovery methods aimed at discovering novel chemical and biological means of targeting a short list of host and viral entities which should extend the arsenal of anti-SARS-CoV-2 agents. This longer term strategy would provide a deeper pool of drug choices for future-proofing against acquired drug resistance. Second, there will be further viral threats, which will inevitably evade existing vaccines. This will require a coherent therapeutic strategy which pharmacology and pharmacologists are best placed to provide. LINKED ARTICLES: This article is part of a themed issue on The Pharmacology of COVID-19. To view the other articles in this section visit http://onlinelibrary.wiley.com/doi/10.1111/bph.v177.21/issuetoc., (© 2020 The Authors. British Journal of Pharmacology published by John Wiley & Sons Ltd on behalf of British Pharmacological Society.)
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- 2020
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19. Key challenges for the creation and maintenance of specialist protein resources.
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Holliday GL, Bairoch A, Bagos PG, Chatonnet A, Craik DJ, Finn RD, Henrissat B, Landsman D, Manning G, Nagano N, O'Donovan C, Pruitt KD, Rawlings ND, Saier M, Sowdhamini R, Spedding M, Srinivasan N, Vriend G, Babbitt PC, and Bateman A
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- Data Curation, Databases, Protein standards, Molecular Sequence Annotation, Proteins
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As the volume of data relating to proteins increases, researchers rely more and more on the analysis of published data, thus increasing the importance of good access to these data that vary from the supplemental material of individual articles, all the way to major reference databases with professional staff and long-term funding. Specialist protein resources fill an important middle ground, providing interactive web interfaces to their databases for a focused topic or family of proteins, using specialized approaches that are not feasible in the major reference databases. Many are labors of love, run by a single lab with little or no dedicated funding and there are many challenges to building and maintaining them. This perspective arose from a meeting of several specialist protein resources and major reference databases held at the Wellcome Trust Genome Campus (Cambridge, UK) on August 11 and 12, 2014. During this meeting some common key challenges involved in creating and maintaining such resources were discussed, along with various approaches to address them. In laying out these challenges, we aim to inform users about how these issues impact our resources and illustrate ways in which our working together could enhance their accuracy, currency, and overall value., (© 2015 The Authors. Proteins published by Wiley Periodicals, Inc.)
- Published
- 2015
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