200 results on '"Nazarullah A"'
Search Results
2. mTOR inhibition abrogates human mammary stem cells and early breast cancer progression markers
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Bouamar, Hakim, Broome, Larry Esteban, Lathrop, Kate Ida, Jatoi, Ismail, Brenner, Andrew Jacob, Nazarullah, Alia, Gorena, Karla Moncada, Garcia, Michael, Chen, Yidong, Kaklamani, Virginia, and Sun, Lu-Zhe
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- 2023
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3. mTOR inhibition abrogates human mammary stem cells and early breast cancer progression markers
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Hakim Bouamar, Larry Esteban Broome, Kate Ida Lathrop, Ismail Jatoi, Andrew Jacob Brenner, Alia Nazarullah, Karla Moncada Gorena, Michael Garcia, Yidong Chen, Virginia Kaklamani, and Lu-Zhe Sun
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Stem cells ,mTOR ,Rapamycin ,Sirolimus ,Progression markers ,Mammary stem cells ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Mammary physiology is distinguished in containing adult stem/progenitor cells that are actively amending the breast tissue throughout the reproductive lifespan of women. Despite their importance in both mammary gland development, physiological maintenance, and reproduction, the exact role of mammary stem/progenitor cells in mammary tumorigenesis has not been fully elucidated in humans or animal models. The implications of modulating adult stem/progenitor cells in women could lead to a better understanding of not only their function, but also toward possible breast cancer prevention led us to evaluate the efficacy of rapamycin in reducing mammary stem/progenitor cell activity and malignant progression markers. Methods We analyzed a large number of human breast tissues for their basal and luminal cell composition with flow cytometry and their stem and progenitor cell function with sphere formation assay with respect to age and menopausal status in connection with a clinical study (NCT02642094) involving a low-dose (2 mg/day) and short-term (5–7 days) treatment of the mTOR inhibitor sirolimus. The expression of biomarkers in biopsies and surgical breast samples were measured with quantitative analysis of immunohistochemistry. Results Sirolimus treatment significantly abrogated mammary stem cell activity, particularly in postmenopausal patients. It did not affect the frequency of luminal progenitors but decreased their self-renewal capacity. While sirolimus had no effect on basal cell population, it decreased luminal cell population, particularly in postmenopausal patients. It also significantly diminished prognostic biomarkers associated with breast cancer progression from ductal carcinoma in situ to invasive breast cancer including p16INK4A, COX-2, and Ki67, as well as markers of the senescence-associated secretary phenotype, thereby possibly functioning in preventing early breast cancer progression. Conclusion Overall, these findings indicate a link from mTOR signaling to mammary stem and progenitor cell activity and cancer progression. Trial registration This study involves a clinical trial registered under the ClinicalTrials.gov identifier NCT02642094 registered December 30, 2015.
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- 2023
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4. Detection of Corynebacterium kroppenstedtii in Granulomatous Lobular Mastitis Using Real-Time Polymerase Chain Reaction and Sanger Sequencing on Formalin-Fixed, Paraffin-Embedded Tissues
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Tariq, Hamza, Menon, Preethi D., Fan, Hongxin, Vadlamudi, Kumari V., Pandeswara, Sri Lakshmi, Nazarullah, Alia N., and Mais, Daniel D.
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Nucleotide sequencing -- Usage ,Granuloma -- Diagnosis ,DNA sequencing -- Usage ,Mastitis -- Diagnosis ,Polymerase chain reaction -- Usage ,Actinomycetales infections -- Diagnosis ,Health - Abstract
* Context.--Associations between granulomatous lobular mastitis (GLM) and Corynebacterium kroppenstedtii have been reported since 2002, but large-scale studies to assess the actual prevalence of this bacterium in GLM have not been performed. Objective.--To assess the prevalence of C kroppenstedtii in GLM using real-time polymerase chain reaction and Sanger sequencing. Design.--We analyzed formalin-fixed, paraffin-embedded tissues from 67 cases of GLM by sequential DNA amplification and sequencing to assess the rate of C kroppenstedtii detection in GLM. A retrospective analysis including patient demographics, history of pregnancy and lactation, clinical signs and symptoms, radiographic findings, histologic pattern, Gram stain results, and microbial cultures was performed on 67 cases of GLM. In addition, 10 cases of nongranulomatous breast abscess were included as controls. Results.--C kroppenstedtii 16S rRNA SYBR real-time polymerase chain reaction was positive on formalin-fixed, paraffin-embedded tissues from 46 of 67 (68.7%) GLM cases, while all control cases were negative. Among the positive cases, the majority showed features of cystic neutrophilic granulomatous mastitis. Conclusions.--C kroppenstedtii was highly prevalent in GLM cases and was not found to be associated with nongranulomatous breast abscess in our study (P < .001)., Granulomatous lobular mastitis (GLM) is an uncommon benign, inflammatory disease of the breast first described in 1972 by Kessler and Wolloch (1) that characteristically affects women of childbearing age with [...]
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- 2022
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5. Accuracy of Intraoperative Frozen Section in Detection of Acute Invasive Fungal Rhinosinusitis
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Alkhateb, Rahaf, Menon, Preethi Dileep, Tariq, Hamza, Hackman, Sarah, Nazarullah, Alia, and Mais, Daniel D.
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Diagnosis, Surgical -- Evaluation ,Clinical pathology -- Methods ,Sinusitis -- Diagnosis ,Frozen tissue sections -- Evaluation ,Mycoses -- Diagnosis ,Health - Abstract
Context.--Acute invasive fungal rhinosinusitis (AIFRS) is an aggressive form of fungal sinusitis, which remains a significant cause of morbidity and mortality. Early diagnosis and intervention are keys to improving patient outcomes. Intraoperative consultation has shown promise in facilitating early surgical intervention, but the accuracy of frozen section has not been clarified in this setting. Objectives.--To assess the accuracy of frozen-section diagnosis in patients with clinically suspected AIFRS. Design.--All cases of clinically suspected AIFRS during a 10-year period (2009-2019) were retrospectively reviewed. The frozen-section results were compared with the final permanent sections as well as the tissue fungal culture results, following which the accuracy of frozen section was determined. Results.--Forty-eight patients with 133 frozen-section evaluations for AIFRS were included in the study. Thirty of 48 patients and 61 of 133 specimens were positive for AIFRS on final pathology. Of 30 positive patients, 27 (90%) had at least 1 specimen diagnosed as positive during intraoperative consultation; among the 61 positive specimens, 54 (88.5%) were diagnosed as positive during intraoperative consultation. Of 72 negative specimens, all were interpreted as negative on frozen section. Thus, frozen sections had a sensitivity of 88.5% (95% CI, 0.78-0.97), specificity of 100% (95% CI, 0.94-1), positive predictive value of 100% (95% CI, 0.92-1), and negative predictive value of 90.6% (95% CI, 0.82-0.97). Conclusions.--This study represents the largest series assessing the diagnostic accuracy of frozen section analysis in AIFRS. These findings are useful in frozen section-informed intraoperative decision making. (Arch Pathol Lab Med. 2021;145:648-656; doi: 10.5858/arpa.2019-0696-OA, Acute invasive fungal rhinosinusitis (AIFRS) is a potentially lethal and rapidly progressive disease. It primarily affects immunocompromised or diabetic patients, in whom organisms that are ubiquitous but usually harmless can [...]
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- 2021
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6. Nuclear NADPH oxidase-4 associated with disease progression in renal cell carcinoma
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Kaushik, Dharam, Ashcraft, Keith A., Wang, Hanzhang, Shanmugasundaram, Karthigayan, Shah, Pankil K., Gonzalez, Gabriela, Nazarullah, Alia, Tye, Cooper B., Liss, Michael A., Pruthi, Deepak K., Mansour, Ahmed M., Chowdhury, Wasim, Bacich, Dean, Zhang, Hao, Watson, Amanda L., Block, Karen, O'Keefe, Denise, and Rodriguez, Ronald
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- 2020
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7. Pediatric post-transplant lymphoproliferative disorder identified on random gastrointestinal biopsies shows non-mass-forming PTLD with clonal plasma cells: report of 2 cases
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Tariq, H., Dileep Menon, P., Alkhateb, R., Forker, C., Holder, K., and Nazarullah, A.
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- 2020
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8. Bilateral Paget’s Disease of the Breast in a Patient with CHEK2 Mutation
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Nicci Owusu-Brackett, Preethi Dileep Menon, Alia Nazarullah, Ismail Jatoi, and Maryam Elmi
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breast ,mammary paget’s disease ,chek2 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 ,Medicine - Abstract
We report a case of a 53-year-old woman with a CHEK2 mutation who was found on histology to have bilateral incidental Paget’s disease of the breast following bilateral prophylactic mastectomy.
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- 2020
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9. S3103 A B-Wildering Case of Gastrointestinal Bleeding
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Vinall, Adam, primary, Loganathan, Priyadarshini, additional, Gajendran, Mahesh, additional, Keiser, Sylvia, additional, Nazarullah, Alia, additional, and Sayana, Hari, additional
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- 2023
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10. S2515 AIDS-Related Kaposi Sarcoma in Rectum
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Thallapureddy, Keerthi, primary, Alvarez, James, additional, De La Cruz, Ricardo, additional, Nazarullah, Alia, additional, and Snyder, Patrick, additional
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- 2023
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11. Effects of Using Fermented Moringa (Moringa oleifera) Leaf Meal and Yellow Corn in the Diets on the Performances and Income Over Feed Cost of the Broiler Chickens
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Zulfan Zulfan, Zulfikar Zulfikar, Herawati Latif, Allaily Allaily, Taufik Nazarullah, and Rhaudatul Shaleha
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broiler ,corn ,fermentation ,iofc ,moringa ,performances ,jagung ,fermentasi ,kelor ,performan ,Animal culture ,SF1-1100 - Abstract
ABSTRAK. Recently, exploring unconventional feedstuffs were not merely interested at the point of lower cost, but also natural sources and supporting bird health have been noticing on the critical assessments by poultry nutritionists to serve well broiler meat. This study aimed to examine the effect of including fermented moringa leaf meal (fMOL) + yellow corn (yC) to substitute fractionally commercial diet (CD) on the performances and Income over Feed Cost (IOFC) of the broiler chickens. The study was done in the Field Laboratory of Animal Husbandry, Animal Husbandry Department, Syiah Kuala University from August 4 until September 15, 2020. The study used 100 broiler chicks strain CP 707, unsex. This study was set up into Block Randomized Design (BRD) consisting of 4 treatments and 5 blocks. The treatments were MC0 = 100% CD, MC1= 95% CD + 2,5% fMOL + 2,5% yC, MC2= 90% CDR + 5% fMOL + 5% yC, and MC3= 85% CD + 7,5% fMOL + 7,5% yC. The results of studies showed that including fMOL + yC to substitute partly commercial diet significantly (P0.05) reduced final body weight (FBW) and increased feed conversion ratio (FCR) of the broilers. Feed consumption statistically was not significantly affected but tended to reduce. Using fMOL + yC reduced feed cost but revenue and IOFC also declined. (Pengaruh penggunaan campuran daun kelor dan jagung terhadap performan dan IOFC ayam broiler) ABSTRACT. Tujuan penelitian ini adalah untuk melihat pengaruh penggunaan tepung daun kelor fermentasi (TKF) ditambah dengan jagung kuning (JK) sebagai pengganti sebagian ransum komersil (RK) terhadap performan ayam broiler. Penelitian ini dilakukan di Laboratorium Lapangan Peternakan, Fakultas Pertanian Universitas Syiah Kuala, Banda Aceh. Materi yang digunakan adalah 100 ekor DOC ayam broiler strain CP 707. Ransum perlakuan adalah MC0= RK 100%, MC1= 95% RK + 2,5% TKF + 2,5% JK, MC2= 90% RK + 5% TKF + 5% JK, dan MC3= 85% RK + 7,5% TKF + 7,5% JK. Rancangan yang digunakan adalah Rancangan Acak Kelompok (RAK) terdiri dari 4 perlakuan dan 5 kelompok. Pengelompokan didasarkan pada berat badan ayam pada awal minggu ketiga. Parameter yang diamati meliputi berat badan akhir, konsumsi dan konversi ransum, dan Income Over Feed and Cost (IOFC), Hasil penelitian memperlihatkan bahwa penggunaan TKF + JK sebagai substitusi sebagian ransum komersil nyata (P0,05) menurunkan berat badan akhir dan meningkatkan konversi ransum. Konsumsi ransum tidak nyata berpengaruh, namun cenderung menurun. Pengunaan daun kelor menurunkan biaya ransum, dan IOFC.
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- 2021
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12. Diagnosis of uterine lymphoma on cervical pap smear: Case report and review of literature
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Preethi Dileep Menon, Hamza Tariq, Cynthia Forker, and Alia Nazarullah
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Cervix ,Lymphoma ,Papanicolaou ,Smear ,Uterus ,Pathology ,RB1-214 - Abstract
Hematolymphoid neoplasms rarely involve the cervix, with an overall incidence of less than 1% among all cervical malignancies. Clinical presentations include abnormal uterine bleeding, pelvic discomfort, dyspareunia, back pain and vaginal discharge. Cervical Papanicolaou Smear is an important screening tool for early detection of cervical epithelial lesions; however, a high index of suspicion is needed to recognize non-epithelial malignancies like lymphoma. We report the case of a 48-year-old woman who presented with abnormal vaginal bleeding. Pap smear showed large atypical discohesive cells with vesicular chromatin and prominent nucleoli. A cell block preparation with immunohistochemistry confirmed large B-cell lymphoma. This diagnosis is important due to management strategy differences of chemoradiation over surgery in hematologic malignancies. A review of literature of hematologic malignancies diagnosed on Pap smear is also reported.
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- 2021
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13. Platelet-Derived Growth Factor-D Fusion-Positive Dermatofibrosarcoma Protuberans: Case Report of an Atypical Breast Mass and Literature Review.
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Chandler, Blake, Jing, Frank, David, Marjorie Parker, and Nazarullah, Alia
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LITERATURE reviews ,BREAST ,FLUORESCENCE in situ hybridization ,CELL tumors ,PROTEIN-tyrosine kinases ,BREAST tumors - Abstract
Dermatofibrosarcoma protuberans (DFSP) is a rare, CD34+ mesenchymal neoplasm that classically involves the dermis. A COL1A1::PDGFB t(17;22) translocation is present in 91.4% to 96% of cases, resulting in aberrant proliferation due to tyrosine kinase hyperactivity. Here, we present a postmenopausal woman with a CD34-positive spindle cell neoplasm of the breast without cutaneous involvement, lacking muscle marker expression, STAT6 expression, and 13q14 deletion by fluorescence in situ hybridization (FISH). Although the classic PDGFB translocation was not detected by FISH, the overall features were highly suspicious for DFSP. Subsequent RNA-based next-generation sequencing revealed an EMILIN2::PDGFD fusion. A literature review showed that PDGFD fusions can be detected in up to 55% PDGFB FISH negative cases, with EMILIN2::PDGFD fusion highly associated with fibrosarcomatous transformation. This holds important diagnostic and prognostic information as fibrosarcomatous-DFSP is associated with higher recurrence and metastatic potential. The tumor was completely resected with clear margins, showed no fibrosarcomatous areas, and no evidence of recurrence is documented 2 years since resection. This review and case report adds to the literature regarding PDGFD -translocation positive DFSP as a differential diagnosis of CD34-positive spindle cell tumors of the breast, while emphasizing the prognostic importance of EMILIN2::PDGFD fusions. [ABSTRACT FROM AUTHOR]
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- 2023
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14. Grossing Breast Cancer Specimens: A Comprehensive Review
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Agarwal, Apeksha N., Ritter, Jacob, Dornbluth, Nella C., Mais, Daniel D., and Nazarullah, Alia N.
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- 2020
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15. Incidental Microscopic Granulosa Cell Proliferations: Tumorlet or Non-neoplastic?
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Menon, Preethi D., Valente, Philip, and Nazarullah, Alia
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- 2020
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16. Composition and Catch Rate of Purse Seine Fishery Unit at the Tegal Fish Landing, Central Java
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Alexander M. A. Khan, Lantun Paradhita Dewanti, Ine Maulina, and Ikhlas Nazarullah
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History ,Computer Science Applications ,Education - Abstract
Purse seine fishing gear is one of the fishing gear used by the fisherman at the Tegal Fish Landing to catch pelagic fish. This study aims to analyze the composition of purse seine catches and catch rates based on the number of catches and trips to sea, determine the selectivity of purse seine fishing gear base on the number and species. The research method used survey methods and data in quantitative analysis, the analysis of the composition of the catch is secondary to the volume of purse seine catches at Tegal Fish Landing throughout September to November 2019. The capture rate was calculated using secondary data on the number of trips and the total production of purse seine at the Tegal Fish Landing from 2014 to 2018. Selectivity of puse seine fishing gear using primary data includes the number and weight of catches, identification of fishing gear, work equpment, safety equipment, supplies, navigation tools, accident history. The dominant variety of catch species was small pelagic fish, namely Decapterus macrosoma, Sardinella lemuru, and Rastrelliger kanagurta. The largest percentage of catches in September was 52% Decapterus macrosoma, 13% Sardinella lemuru, and Rastrelliger kanagurta. The location of the fishing grounds is in the WPP area 712 and 713 the average CPUE purse seine per year at Tegal Fish Landing was 26.710 kg or 26,7 tons per trip for each vessel. This shows that purse seine capture productivity was still quite low when compared to the size of Gross Tonnage. Purse seine gear for five fishing vessels that landed at Tegal Fish Landing selectively. During the study the proportion of the amount and weight of the five vessels was more thant 60%.
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- 2022
17. Abstract #1409027: Paraneoplastic Hyperthyroidism
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Le, Guillaume, primary, Escobar, Maria, additional, Bruder, Jan, additional, and Nazarullah, Alia, additional
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- 2023
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18. Supplementary figure legend from Everolimus Inhibits the Progression of Ductal Carcinoma In Situ to Invasive Breast Cancer Via Downregulation of MMP9 Expression
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Chen, Guang, primary, Ding, Xiao-Fei, primary, Pressley, Kyle, primary, Bouamar, Hakim, primary, Wang, Bingzhi, primary, Zheng, Guixi, primary, Broome, Larry E., primary, Nazarullah, Alia, primary, Brenner, Andrew J., primary, Kaklamani, Virginia, primary, Jatoi, Ismail, primary, and Sun, Lu-Zhe, primary
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- 2023
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19. Figure S1 from Everolimus Inhibits the Progression of Ductal Carcinoma In Situ to Invasive Breast Cancer Via Downregulation of MMP9 Expression
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Chen, Guang, primary, Ding, Xiao-Fei, primary, Pressley, Kyle, primary, Bouamar, Hakim, primary, Wang, Bingzhi, primary, Zheng, Guixi, primary, Broome, Larry E., primary, Nazarullah, Alia, primary, Brenner, Andrew J., primary, Kaklamani, Virginia, primary, Jatoi, Ismail, primary, and Sun, Lu-Zhe, primary
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- 2023
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20. Supplementary figure legend from Everolimus Inhibits the Progression of Ductal Carcinoma In Situ to Invasive Breast Cancer Via Downregulation of MMP9 Expression
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Lu-Zhe Sun, Ismail Jatoi, Virginia Kaklamani, Andrew J. Brenner, Alia Nazarullah, Larry E. Broome, Guixi Zheng, Bingzhi Wang, Hakim Bouamar, Kyle Pressley, Xiao-Fei Ding, and Guang Chen
- Abstract
Supplementary figure legend
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- 2023
21. Data from Everolimus Inhibits the Progression of Ductal Carcinoma In Situ to Invasive Breast Cancer Via Downregulation of MMP9 Expression
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Lu-Zhe Sun, Ismail Jatoi, Virginia Kaklamani, Andrew J. Brenner, Alia Nazarullah, Larry E. Broome, Guixi Zheng, Bingzhi Wang, Hakim Bouamar, Kyle Pressley, Xiao-Fei Ding, and Guang Chen
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Purpose:We evaluated the role of everolimus in the prevention of ductal carcinoma in situ (DCIS) to invasive ductal carcinoma (IDC) progression.Experimental Design:The effects of everolimus on breast cancer cell invasion, DCIS formation, and DCIS progression to IDC were investigated in a 3D cell culturing model, intraductal DCIS xenograft model, and spontaneous MMTV-Her2/neu mouse model. The effect of everolimus on matrix metalloproteinase 9 (MMP9) expression was determined with Western blotting and IHC in these models and in patients with DCIS before and after a window trial with rapamycin. Whether MMP9 mediates the inhibition of DCIS progression to IDC by everolimus was investigated with knockdown or overexpression of MMP9 in breast cancer cells.Results:Everolimus significantly inhibited the invasion of human breast cancer cells in vitro. Daily intragastric treatment with everolimus for 7 days significantly reduced the number of invasive lesions from intraductal DCIS foci and inhibited DCIS progression to IDC in the MMTV-Her2/neu mouse mammary tumor model. Mechanistically, everolimus treatment decreased the expression of MMP9 in the in vitro and in vivo models, and in breast tissues from patients with DCIS treated with rapamycin for 1 week. Moreover, overexpression of MMP9 stimulated the invasion, whereas knockdown of MMP9 inhibited the invasion of breast cancer cell–formed spheroids in vitro and DCIS in vivo. Knockdown of MMP9 also nullified the invasion inhibition by everolimus in vitro and in vivo.Conclusions:Targeting mTORC1 can inhibit DCIS progression to IDC via MMP9 and may be a potential strategy for DCIS or early-stage IDC therapy.
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- 2023
22. Figure S1 from Everolimus Inhibits the Progression of Ductal Carcinoma In Situ to Invasive Breast Cancer Via Downregulation of MMP9 Expression
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Lu-Zhe Sun, Ismail Jatoi, Virginia Kaklamani, Andrew J. Brenner, Alia Nazarullah, Larry E. Broome, Guixi Zheng, Bingzhi Wang, Hakim Bouamar, Kyle Pressley, Xiao-Fei Ding, and Guang Chen
- Abstract
mTOR inhibition decreases MMP9 expression. A, Everolimus treatment for 24 hours did not reduced MMP2 protein levels in SUM225 cells. B, C and D figures were the MMP-9 IHC quantification data measuring average optical density using ImageJ d 1.47 software. B, one-week Everolimus treatments at 2 mg/kg/day significantly decreased MMP9 protein levels in the mammary gland of MMTV/neu mice (n=3). C, one-week-Everolimus treatments at 2 mg/kg decreased MMP9 protein levels in the mammary gland of SUM225-MIND mouse mammary tissues detected by IHC (n=4). D, one-week-rapamycin treatments at 2 mg/day reduced MMP9 protein levels in mammary glands of DCIS patients detected by IHC. **p
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- 2023
23. The Emerging Role of Corynebacteria in the Pathogenesis of Granulomatous Lobular Mastitis
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Hamza Tariq and Alia Noohu Nazarullah
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General Medicine - Published
- 2022
24. Aggressive NK-cell leukemia: A rare entity with diagnostic and therapeutic challenge
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Alia Nazarullah, Michelle Don, Yuliya Linhares, Serhan Alkan, and Qin Huang
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Aggressive ,Natural killer ,Leukemia ,Hemophagocytosis ,EBV ,Pathology ,RB1-214 - Abstract
Aggressive natural killer cell leukemia (ANKL) is a rare neoplasm of mature natural killer cells, with an extremely poor overall survival, which is almost always EBV related, with majority of cases reported in East Asia. Here we report the case of an ANKL presenting in a young Hispanic male with secondary hemophagocytosis. Aggressive clinical course, high EBV DNA levels and leukemic presentation, often with associated hemophagocytosis, should raise suspicion of an NK/T-cell neoplasm like ANKL. Due to significant diagnostic overlap with extranodal NK/T-cell lymphoma, nasal type (ENKL), accurate diagnostic classification is crucial due to differing treatment and prognosis. L-asparaginase including chemotherapy followed by allogeneic stem cell transplantation appears to slightly prolong overall survival, but relapse is almost inevitable. Clinical monitoring of EBV DNA levels shows good correlation with disease activity.
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- 2016
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25. Abstract P1-10-06: Effect of aging and mTOR inhibition on human mammary stem cells and early breast cancer progression markers
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Larry E Broome, Hakim Bouamar, Kate Lathrop, Ismail Jatoi, Andrew Brenner, Michael Garcia, Alia Nazarullah, Karla Moncada, Virginia Kaklamani, and Lu-Zhe Sun
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Cancer Research ,Oncology ,skin and connective tissue diseases - Abstract
Ductal carcinoma in situ (DCIS) is the most common form of breast cancer and is a predecessor to invasive carcinoma development. The origins for early breast cancer have been attributed to aberrant single cells, which may include adult stem and progenitor cells. We performed a window trial with mTOR inhibitor sirolimus in patients with atypical ductal hyperplasia (ADH) or DCIS and investigated the epithelial populations in adjacent normal and ADH/DCIS breast tissues along with their residing stem and progenitor cell activity. Differences associated with age, menopausal status, and treatment by sirolimus have also been explored. While the mammary epithelial populations were seen to be unchanged in aging, we found that age correlates with a decline in stem cell activity. mTOR inhibition was also able to abrogate mammary stem cell activity and decrease luminal progenitor passaging lifespan, particularly in postmenopausal patients. While mTOR inhibition had no effect on myoepithelial populations, it did decrease premenopausal luminal cell populations and reduced prognostic markers associated with breast cancer progression from DCIS to invasive breast cancer. These markers include p16INK4A, COX-2, and Ki67, which were reduced in DCIS breast tissue from patients administered with sirolimus as shown through quantitative analysis of immunohistochemistry. Overall, these findings indicate a link from mTOR signaling to mammary stem cell activity and cancer progression. mTOR inhibitors may have potential for breast cancer prevention. Citation Format: Larry E Broome, Hakim Bouamar, Kate Lathrop, Ismail Jatoi, Andrew Brenner, Michael Garcia, Alia Nazarullah, Karla Moncada, Virginia Kaklamani, Lu-Zhe Sun. Effect of aging and mTOR inhibition on human mammary stem cells and early breast cancer progression markers [abstract]. In: Proceedings of the 2021 San Antonio Breast Cancer Symposium; 2021 Dec 7-10; San Antonio, TX. Philadelphia (PA): AACR; Cancer Res 2022;82(4 Suppl):Abstract nr P1-10-06.
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- 2022
26. Abstract A004: Development and validation of a convolutional neural network to identify ductal carcinoma in situ in lumpectomy margins using wide field optical coherence tomography
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Rempel, David, primary, Berkeley, Andrew, additional, Thompson, Alastair, additional, Krishnamurthy, Savitri, additional, Augustine, Beryl, additional, Hunt, Kelly, additional, Jatoi, Ismail, additional, Nazarullah, Alia, additional, Nagi, Chandandeep, additional, and Levy, Yanir, additional
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- 2022
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27. Persepsi Resiko Covid-19 pada Siswa MAN 1 Pidie
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Darwin Darwin, Nurainun Nurainun, Yuliana Yuliana, Saudah Saudah, M. Nazarullah, Cut Ratna Dewi, and Fitri Juliana
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Individual responses to the COVID-19 pandemic are influenced by their knowledge and perception of the pandemic. This study aims to determine the relationship between knowledge and risk perception of MAN 1 Pidie students against Covid-19. This research is a descriptive study using quantitative methods with a survey model, namely a cross-sectional survey. The research population was all MAN 1 Pidie who were selected using a total sampling technique. Data was collected using a questionnaire with the help of the Google Forms application. The data obtained were analyzed descriptively using the Pearson correlation test and simple linear regression test. This study indicates that students' knowledge about covid-19 is in the high category, while students' risk perceptions are in the medium category. Statistical test results show the value of sig. 0.0000.05. Thus, this study concludes a significant relationship between students' knowledge about COVID-19 and their perception of risk for COVID-19.AbstrakRespons individu terhadap pandemi covid-19 dipengaruhi oleh pengetahuan dan persepsinya terhadap pandemi tersebut. Penelitian ini bertujuan untuk mengetahui hubungan antara pengetahuan dan persepsi risiko siswa MAN 1 Pidie terhadap Covid-19. Penelitian ini adalah penelitian deskriptif menggunakan metode kuantitatif dengan model survei yaitu cross sectional survei. Populasi penelitian adalah seluruh siswa MAN 1 Pidie yang dipilih menggunakan teknik total sampling. Data dikumpulkan menggunakan kuesioner dengan bantuan aplikasi google formulir. Data yang diperoleh dianalisis secara deskriptif dan menggunakan uji korelasi Pearson dan uji regresi linier sederhana. Hasil penelitian ini menunjukkan bahwa pengetahuan siswa tentang covid-19 berada pada kategori tinggi, sedangkan persepsi risiko siswa berada pada kategori sedang. Hasil uji statistik menunjukkan nilai sig. 0,0000,05. Dengan demikian penelitian ini menyimpulkan bahwa terdapat hubungan yang signifikan antara pengetahuan siswa tentang covid-19 dengan persepsi resiko mereka terhadap covid-19.
- Published
- 2021
28. TEORI-TEORI KOMUNIKASI MASSA DALAM PERSPEKTIF ISLAM
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Nazarullah Nazarullah
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Islam ,BP1-253 ,Communication. Mass media ,P87-96 - Abstract
The science of Islamic communication, as well as the science of general communication, discusses about human beings. Communication exists in all aspects of human life. Communication has basically been taught by the Creator, Allah SWT, through the holy book of the Qur'an about how important communication for mankind, especially Muslims. Efforts to convey the message of speech to influence people called the mass, must use theories of mass communication in accordance with the principles and teachings of Islam, which comes from the Koran and Hadith as well as ijmak ulama. Various theories have actually existed since the Qur'an even since this nature was created, but its development continues to evolve with the times
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- 2018
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29. Peran Humas UIN Ar-Raniry dalam Membangun Relasi dengan Media Pers
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Nazarullah
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Documentation ,Qualitative analysis ,Reciprocity (social psychology) ,Media studies ,Sociology ,Media relations ,Descriptive research ,Relation (history of concept) ,Press conference ,Research method - Abstract
This study attempts to describe the communication strategies used and various kinds of activities carried out by UIN Ar-Raniry public relations in establishing relationships with the press media. The research method used in this study is the qualitative method with a descriptive approach. The data sources of this study were obtained from respondents as the primary data source through several stages in the form of observations records, in-depth interviews, and documentation. The data analysis was performed by using descriptive qualitative analysis techniques through three flows of activities that were carried out simultaneously, namely data reduction, data presentation, and conclusion drawing. The result of the study revealed that the role of public relations of UIN Ar-Raniry in establishing relations with the press media has been going well. It can be seen from the communication strategies used and the various forms of activities that is organized by UIN Ar-Raniry public relation in developing relations with the press media. The communication strategy used is a two-way symmetrical and Reciprocity communication strategy that conforms to the principles of media relations. Several kinds of activities carried out by UIN Ar-Raniry public relations in developing relationships with the press media are Press Coverage, Press Conference, Press Release, Press Statement, Press Interview, and Electronics Communications. Meanwhile, the informal activities are Press Reception and Morning Coffee.
- Published
- 2021
30. Detection of Corynebacterium kroppenstedtii in Granulomatous Lobular Mastitis Using Real-Time Polymerase Chain Reaction and Sanger Sequencing on Formalin-Fixed, Paraffin-Embedded Tissues
- Author
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Hongxin Fan, Alia Nazarullah, Preethi Dileep Menon, Kumari Vadlamudi, Daniel D. Mais, Hamza Tariq, and Srilakshmi Pandeswara
- Subjects
Pathology ,medicine.medical_specialty ,Formalin fixed paraffin embedded ,Granulomatous mastitis ,Corynebacterium ,Biology ,Real-Time Polymerase Chain Reaction ,Pathology and Forensic Medicine ,law.invention ,symbols.namesake ,law ,Formaldehyde ,RNA, Ribosomal, 16S ,medicine ,Humans ,Granulomatous Mastitis ,Polymerase chain reaction ,Retrospective Studies ,Corynebacterium kroppenstedtii ,Sanger sequencing ,Paraffin Embedding ,Corynebacterium Infections ,General Medicine ,medicine.disease ,Abscess ,Medical Laboratory Technology ,Real-time polymerase chain reaction ,Granulomatous lobular mastitis ,Gram staining ,symbols ,Female ,human activities - Abstract
Context.— Associations between granulomatous lobular mastitis (GLM) and Corynebacterium kroppenstedtii have been reported since 2002, but large-scale studies to assess the actual prevalence of this bacterium in GLM have not been performed. Objective.— To assess the prevalence of C kroppenstedtii in GLM using real-time polymerase chain reaction and Sanger sequencing. Design.— We analyzed formalin-fixed, paraffin-embedded tissues from 67 cases of GLM by sequential DNA amplification and sequencing to assess the rate of C kroppenstedtii detection in GLM. A retrospective analysis including patient demographics, history of pregnancy and lactation, clinical signs and symptoms, radiographic findings, histologic pattern, Gram stain results, and microbial cultures was performed on 67 cases of GLM. In addition, 10 cases of nongranulomatous breast abscess were included as controls. Results.— C kroppenstedtii 16S rRNA SYBR real-time polymerase chain reaction was positive on formalin-fixed, paraffin-embedded tissues from 46 of 67 (68.7%) GLM cases, while all control cases were negative. Among the positive cases, the majority showed features of cystic neutrophilic granulomatous mastitis. Conclusions.— C kroppenstedtii was highly prevalent in GLM cases and was not found to be associated with nongranulomatous breast abscess in our study (P < .001).
- Published
- 2021
31. Meta Analysis: The Relationship Of Knowledge And Education Level Of The Mother With Dental Caries In Children
- Author
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Akbar Nazarullah Syada, Syamsul Arifin, Ari Yunanto, Lenie Marlinae, and Izaak Zoelkarnain
- Subjects
Meta-analysis ,Psychology ,Clinical psychology - Published
- 2021
32. EFEKTIVITAS CYBERMEDIA SEBAGAI SARANA KOMUNIKASI DAKWAH MODERN
- Author
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Nazarullah Nazarullah
- Subjects
Islam ,BP1-253 ,Communication. Mass media ,P87-96 - Abstract
This article discusses the effectiveness of cybermedia as a means of modern da'wah communication, focusing on several issues, namely the general description of cybermedia, the meaning of dakwah and the possibility of internet becoming the medium of da'wah and strategy and utilization of internet in da'wah in modern era. Through this article the authors argue that in this era of information technology, it should be Muslims in general and the preachers in particular take advantage of new media the Internet as a means of preaching to be more effective. Furthermore, by making cybermedia or internet as a medium of da'wah today, the real actors of da'wah have confirmed the pattern of modern dakwah. Keywords: effectiveness, cybermedia, modern da'wah pattern.
- Published
- 2017
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33. Bilateral conjunctival pediatric follicular lymphoma
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Nazarullah, Alia, Dietz, Luke, Wright, Kenneth, Alkan, Serhan, and Huang, Qin
- Published
- 2016
- Full Text
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34. Composition and Catch Rate of Purse Seine Fishery Unit at the Tegal Fish Landing, Central Java
- Author
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Nazarullah, Ikhlas, primary, Maulina, Ine, primary, Dewanti, Lantun Paradhita, primary, and Khan, Alexander M. A., primary
- Published
- 2022
- Full Text
- View/download PDF
35. Abstract 458: Development and validation of convolutional neural network to identify regions of interest in lumpectomy margins using optical coherence tomography
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Rempel, David, primary, Berkeley, Andrew, additional, Nagi, Chandandeep, additional, Pekar, Vladimir, additional, Burns, Margaret, additional, Augustine, Beryl, additional, Nazarullah, Alia, additional, Jatoi, Ismail, additional, Hunt, Kelly K., additional, Thompson, Alastair, additional, and Krishnamurthy, Savitri, additional
- Published
- 2022
- Full Text
- View/download PDF
36. Abstract #1409027: Paraneoplastic Hyperthyroidism
- Author
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Guillaume Le, Maria Escobar, Jan Bruder, and Alia Nazarullah
- Subjects
Endocrinology ,Endocrinology, Diabetes and Metabolism - Published
- 2023
37. Platelet-Derived Growth Factor-D Fusion-Positive Dermatofibrosarcoma Protuberans: Case Report of an Atypical Breast Mass and Literature Review
- Author
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Blake Chandler, Frank Jing, Marjorie Parker David, and Alia Nazarullah
- Subjects
Surgery ,Anatomy ,Pathology and Forensic Medicine - Abstract
Dermatofibrosarcoma protuberans (DFSP) is a rare, CD34+ mesenchymal neoplasm that classically involves the dermis. A COL1A1::PDGFB t(17;22) translocation is present in 91.4% to 96% of cases, resulting in aberrant proliferation due to tyrosine kinase hyperactivity. Here, we present a postmenopausal woman with a CD34-positive spindle cell neoplasm of the breast without cutaneous involvement, lacking muscle marker expression, STAT6 expression, and 13q14 deletion by fluorescence in situ hybridization (FISH). Although the classic PDGFB translocation was not detected by FISH, the overall features were highly suspicious for DFSP. Subsequent RNA-based next-generation sequencing revealed an EMILIN2::PDGFD fusion. A literature review showed that PDGFD fusions can be detected in up to 55% PDGFB FISH negative cases, with EMILIN2::PDGFD fusion highly associated with fibrosarcomatous transformation. This holds important diagnostic and prognostic information as fibrosarcomatous-DFSP is associated with higher recurrence and metastatic potential. The tumor was completely resected with clear margins, showed no fibrosarcomatous areas, and no evidence of recurrence is documented 2 years since resection. This review and case report adds to the literature regarding PDGFD-translocation positive DFSP as a differential diagnosis of CD34-positive spindle cell tumors of the breast, while emphasizing the prognostic importance of EMILIN2::PDGFD fusions.
- Published
- 2023
38. Abstract PS14-17: Rapamycin inhibits stem cell function and diminishes inflammation and senescence markers in human mammary gland
- Author
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Lu-Zhe Sun, Larry E. Broome, Virginia G. Kaklamani, Alia Nazarullah, Ismail Jatoi, Andrew Brenner, Xiang Gu, and Hakim Bouamar
- Subjects
Senescence ,Cancer Research ,medicine.anatomical_structure ,Oncology ,Mammary gland ,medicine ,Inflammation ,Stem cell ,medicine.symptom ,Biology ,Function (biology) ,Cell biology - Abstract
Gene expression profiles of some subtypes of breast cancer were shown to correspond to the profiles of the basal or luminal mammary stem/progenitor cell-enriched epithelial cells implicating the mammary stem cells (MaSCs) as tumor-initiating cells for certain types of breast cancer. Moreover, there is growing evidence that MaSCs may initiate neoplastic transformation when dysregulated in mouse models. We have previously reported an increased frequency of the MaSC-enriched Lin-/CD49fhigh/CD24+ basal cells in old mice (>27 month) compared to young ones (2-4 month) along with an increase of hyperplasic lesions. Gene expression profile revealed an increase of immune and inflammatory responses in old basal cells and stroma cells indicating that aging-induced immune and inflammatory responses might initiate basal cell expansion and transformation. Our preliminary data on mice using rapamycin, an immune and inflammation inhibitor, were very encouraging so we decided to start a clinical window trial (NCT02642094) to test whether rapamycin could reduce biomarkers associated with progression to invasive breast cancer and MaSC numbers in postmenopausal patients with atypical ductal hyperplasia (ADH) or ductal carcinoma in situ (DCIS). The patients enrolled in the trial took rapamycin (sirolimus, 2mg/day) for 5-7 days with 3-7 days of washout before surgery. The adjacent non-tumor surgical tissues were used for the measurements of sphere formation efficiency (SFE) of the basal and luminal cells. The control group were patients with ADH/DCIS who did not take the drug. Rapamycin treatment significantly diminished the SFE of the basal MaSC. Immunohistochemical staining of the biopsies and surgical tissues showed that rapamycin treatment significantly decreased the levels of COX2 (an inflammation marker) and p16 (a senescence marker), and moderately increased p62 (an autophagy marker). Furthermore, rapamycin significantly reduced the proliferation marker Ki67 staining. In conclusion, rapamycin inhibits MaSCs function and senescence and inflammation features in human mammary glands. Whether the suppression of the senescence-associated inflammatory responses is the mechanism by which rapamycin suppresses MaSC function is under investigation. Citation Format: Hakim Bouamar, Larry Broome, Xiang Gu, Alia Nazarullah, Andrew Brenner, Virginia Kaklamani, Ismail Jatoi, Lu-Zhe Sun. Rapamycin inhibits stem cell function and diminishes inflammation and senescence markers in human mammary gland [abstract]. In: Proceedings of the 2020 San Antonio Breast Cancer Virtual Symposium; 2020 Dec 8-11; San Antonio, TX. Philadelphia (PA): AACR; Cancer Res 2021;81(4 Suppl):Abstract nr PS14-17.
- Published
- 2021
39. Abstract PS5-31: Molecular markers of response to s-equol, a novel oral estrogen receptor (ER) beta agonist for triple negative breast cancer
- Author
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Richard M. Elledge, Courtney Thomas, Jonathan Gelfond, Sarah Hackman, Kate Lathrop, Virginia G. Kaklamani, Alia Nazarullah, Andrew Brenner, Rong Li, and Marisa Rodriguez
- Subjects
Oncology ,Agonist ,Cancer Research ,medicine.medical_specialty ,Tumor-infiltrating lymphocytes ,medicine.drug_class ,business.industry ,Cancer ,Estrogen receptor ,medicine.disease ,Breast cancer ,Estrogen ,Internal medicine ,medicine ,business ,Triple-negative breast cancer ,Estrogen receptor beta - Abstract
Introduction: Patients with TNBC breast cancer have inferior treatment outcomes compared to other breast cancer subtypes and targeted therapies are lacking. S-equol is a novel oral Estrogen Receptor (ER) Beta agonist with preclinical data showing suppression of TNBC cellular proliferation, and recently presented data showed a decrease in Ki-67 in patients treated with S-equol. This abstract will present the molecular markers that correlate with Ki-67 change in patients with TNBC treated with neoadjuvant S-equol. Methods: We conducted a neoadjuvant window trial that enrolled 39 patients with confirmed TNBC on diagnostic core needle biopsy. Cohort A (20 patients) received a daily dose of 50 mg PO twice daily and Cohort B (19 patients) received a higher dose of 150 mg twice daily. Paired biopsies were evaluable for 36 patients. Both cohorts were treated for a duration of 10-21 days. Primary outcome was change from pre- to post-treatment Ki-67 evaluated by paired t-test and that data was previously published. Secondary endpoints include: Tumor infiltrating lymphocytes in intratumoral and peritumoral (stromal) locations using CD3 (pan T cell) and CD8 (cytotoxic T cell) immunohistochemistry, density of lymphocytes per high power field (40x) for both locations in pre-treatment and post-treatment specimens, Cyclin-D1 protein expression in pre-treatment and post-treatment biopsies as percentage of total tumor cells in pre-treatment and post-treatment specimens, and total estrogen receptor-beta protein expression using immunohistochemistry qualitatively and quantitatively using All-red score in pre-treatment and post-treatment specimens.Results: The primary outcome of Ki-67 decrease of at least 20% from baseline was observed in 28% of the patients. This is a placeholder abstract and an updated abstract with the correlative molecular markers as outlined above will be provided. Conclusion: S-equol is a novel well tolerated oral ER-Beta agonist with inhibition of proliferation in patients with TNBC as measured by a decrease in Ki-67. RNA-seq data, also previously presented, supports potential immune activation during this short period of drug exposure. Future studies aim to evaluate S-equol as an immune activating agent for combination with immunotherapies such as checkpoint inhibitors in TNBC. The pending molecular predictors of response will inform future therapeutic clinical trials for this novel therapy. Citation Format: Kate Lathrop, Virginia Kaklamani, Andrew Brenner, Rong Li, Alia Nazarullah, Sarah Hackman, Courtney Thomas, Jonathan Gelfond, Marisa Rodriguez, Richard Elledge. Molecular markers of response to s-equol, a novel oral estrogen receptor (ER) beta agonist for triple negative breast cancer [abstract]. In: Proceedings of the 2020 San Antonio Breast Cancer Virtual Symposium; 2020 Dec 8-11; San Antonio, TX. Philadelphia (PA): AACR; Cancer Res 2021;81(4 Suppl):Abstract nr PS5-31.
- Published
- 2021
40. PEMBERDAYAAN LEMBAGA KEUANGAN MIKRO SYARIAH
- Author
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Nizar Nazarullah
- Abstract
Kemiskinan adalah masalah utama di Indonesia, untuk mengatasinya dibutuhkan solusi yang melibatkan masyarakat secara partisipatoris agar mencapai pemberdayaan. Untuk itu pemberdayaan dilakukan oleh Koperasi ini dapat berperan dalam peningkatan kesejahteraan ekonomi. program yang bisa dijalankan yaitu; pembiayaan, pendampingan usaha. Skripsi ini bertujuan untuk (1) menjelaskan bagaimana Program Pemberdayaan Koperasi Lembaga Keuangan Mikro Syariah Amanah Makmur Sejahtera; (2) Bagaimana Program Pemberdayaan Koperasi Lembaga Keuangan Mikro Syariah Amanah Makmur Sejahtera dalam Meningkatkan Kesejahteraan Keluarga.Penelitian ini menggunakan pendekatan kualitatif deskriptif, dengan menggunakan tiga metode pengumpulan data, yaitu metode observasi, wawancara, dan dokumentasi. Untuk menganalisis data, peneliti menggunakan tiga jalur analisis yaitu reduksi data, penyajian data, dan penarikan kesimpulan data. Untuk pengecekan keabsahan data, Pengecekan keabsahan data adalah perpanjangan waktu peneliti di Koperasi Lembaga Keuangan Mikro Syariah Amanah Makmur Sejahtera , ketekunan pengamatan serta triangulasi.Hasil penelitian mengungkapkan bahwa Program Pemberdayaan Koperasi Lembaga Keuangan Mikro Syariah Amanah Makmur sejahtera mampu meningkatkan kesejahteraan nasabahnya Mayoritas nasabah menyatakan bahwa setelah adanya Program Pemberdayaan Koperasi sampai saat ini memang berperan besar dalam membantu meningkatkan perekonomian nasabah. Pada saat ini nasabah telah mengalami sejahtera selaras dengan teori menurut Sugiharto bahwa indikator kesejahteraan antara lain pendapatan, konsumsi atau pengeluaran keluarga, keadaan tempattinggal, kesehatan anggota keluarga, kemudahan mendapatkan pelayanan kesehatan, kemudahan memasuki anak ke jenjang pendidikan dan kemudahan mendapatkan fasilitas transportasi.
- Published
- 2021
41. PENGARUH MOL REBUNG BAMBU DAN KEMATANGAN BOKASHI TERHADAP PERTUMBUHAN DAN HASIL TANAMAN KACANG TANAH (Arachis hypogaea)
- Author
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Cut Mulia Sari and Nazarullah Nazarullah
- Abstract
Penelitian ini bertujuan untuk mengetahui pengaruh mol rebung bambu dan tingkat kematangan bokashi terhadap pertumbuhan dan hasil tanaman kacang tanah (Arachis hypogaea) ” serta ada tidaknya interaksi antara kedua faktor yang dicobakan.Penelitian ini dilaksanakan dikebun percobaan Fakultas Pertanian Universitas Jabal Ghafur. Penelitian ini menggunakan Rancangan Acak Kelompok (RAK) pola faktorial 3 x 3 dengan 3 ulangan. Faktor perlakuan mol rebung bambu (M) yaitu:M 1 = 75 cc/liter air, M 2 = 150 cc/literair, M 3 = 225 cc/liter air. Faktor pemberian bokasi pemberian yaitu : B 1 = 15 kg/plot, B 2 = 30 kg/plot, B 3 = 45 kg/plot. Parameter yang diamati pada komponen tanaman jagung meliputi : tinggi tanaman (umur 15, 30 dan 45 HST), jumlah polong dalam satu tanaman dan berat polong/plot (kg). Hasil penelitian menunjukan bahwa, pemberian mol rebung bambu tidak berpengaruh nyata terhadap semua pengamatan yang sudah dicobakan. Pemberian bokashi berpengaruh sangat nyata terhadap parameter tinggi tanaman kacang tanah pada umur 15 HST, dan tidak berpengaruh nyata terhadap parameter lainnya pada umur 30 HST dan 45 HST. Perlakuan terbaik di jumpai B 1 (15 kg/plot). Tidak terdapat interaksi yang nyata antara pemberian mol rebung bambu dan tingkat kematangan bokashi terhadap semua pengamatan diamati. Kata kunci : Mol Rebung Bambu, Kematangan Bokhasi, Tanaman Kacang Tanah
- Published
- 2020
42. The Emerging Role of Corynebacteria in the Pathogenesis of Granulomatous Lobular Mastitis
- Author
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Tariq, Hamza, primary and Nazarullah, Alia Noohu, additional
- Published
- 2022
- Full Text
- View/download PDF
43. Nuclear NADPH oxidase-4 associated with disease progression in renal cell carcinoma
- Author
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Denise S. O'Keefe, Hanzhang Wang, Deepak Pruthi, Michael A. Liss, Wasim H. Chowdhury, Ronald Rodriguez, Karthigayan Shanmugasundaram, Gabriela Gonzalez, Keith A. Ashcraft, Hao Zhang, Dean Bacich, Pankil Shah, Dharam Kaushik, Karen Block, Cooper B. Tye, Amanda L. Watson, Ahmed M. Mansour, and Alia Nazarullah
- Subjects
Male ,0301 basic medicine ,medicine.medical_treatment ,Kaplan-Meier Estimate ,Drug resistance ,urologic and male genital diseases ,Article ,Targeted therapy ,03 medical and health sciences ,0302 clinical medicine ,Renal cell carcinoma ,Cell Line, Tumor ,Physiology (medical) ,Carcinoma ,medicine ,Humans ,Progression-free survival ,Carcinoma, Renal Cell ,Cell Nucleus ,NADPH oxidase ,biology ,urogenital system ,business.industry ,Biochemistry (medical) ,Public Health, Environmental and Occupational Health ,NOX4 ,General Medicine ,Immunotherapy ,Middle Aged ,medicine.disease ,Kidney Neoplasms ,Progression-Free Survival ,female genital diseases and pregnancy complications ,030104 developmental biology ,NADPH Oxidase 4 ,030220 oncology & carcinogenesis ,Multivariate Analysis ,Disease Progression ,cardiovascular system ,biology.protein ,Cancer research ,Female ,business - Abstract
Nuclear NADPH oxidase-4 (Nox4) is a key component of metabolic reprogramming and is often overexpressed in renal cell carcinoma (RCC). However, its prognostic role in RCC remains unclear. Here we examined the significance of nuclear Nox4 on disease progression and development of drug resistance in advanced RCC. We analyzed human RCC tissue from multiple regions in the primary index tumor, cancer-associated normal adjacent parenchyma, intravascular tumor in locally advanced cancer patients. We found that the higher nuclear Nox4 expression was significantly associated with progression and death. These findings were consistent after controlling for other competing clinical variables. In contrast, patients with lower nuclear Nox4, even in higher stage RCC had better prognosis. We identified a subset of patients with high nuclear Nox4 who had rapid disease progression or died within 6 months of surgery. In addition, higher nuclear Nox4 level correlated with resistance to targeted therapy and immunotherapy. Western blotting performed on fresh human RCC tissue as well as cell-lines revealed increased nuclear Nox4 expression. Our data support an important prognostic role of Nox4 mediated regulation of RCC independent of other competing variables. Nox4 localizes to the nucleus in high-grade, high-stage RCC. Higher nuclear Nox4 has prognostic significance for disease progression, poor survival, and development of drug resistance in RCC.
- Published
- 2020
44. Peripheral Blood Examination Findings in SARS-CoV-2 Infection
- Author
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Russell A. Higgins, Alia Nazarullah, Andrew Villarreal, Christine A Liang, and Daniel D Mais
- Subjects
Adult ,Male ,medicine.medical_specialty ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,medicine.medical_treatment ,CD3 ,Pneumonia, Viral ,Peripheral blood ,medicine.disease_cause ,Gastroenterology ,Flow cytometry ,Betacoronavirus ,03 medical and health sciences ,0302 clinical medicine ,Hematologic ,Internal medicine ,medicine ,Humans ,030212 general & internal medicine ,Pandemics ,Aged ,Coronavirus ,Aged, 80 and over ,Mechanical ventilation ,medicine.diagnostic_test ,biology ,SARS-CoV-2 ,business.industry ,Peripheral smear ,COVID-19 ,Complete blood count ,Original Articles ,General Medicine ,Middle Aged ,030220 oncology & carcinogenesis ,Cohort ,biology.protein ,Female ,Coronavirus Infections ,Pelger-Huet Anomaly ,business ,AcademicSubjects/MED00690 - Abstract
Objectives Peripheral blood abnormalities in severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) have not been fully elucidated. We report qualitative and quantitative peripheral blood findings in coronavirus disease 2019 (COVID-19) patients and compare them with a control group. Methods We reviewed electronic medical records, complete blood counts, peripheral blood smears, and flow cytometry data in 12 patients with SARS-CoV-2. These were compared with 10 control patients with symptoms suspicious for SARS-CoV-2 but who tested negative. Results No significant differences were noted in blood counts, except that absolute lymphopenia was present frequently in the control group (P < .05). Acquired Pelger-Huët anomaly (APHA) was noted in all COVID-19 cases, in most cases affecting over 5% of granulocytes. This contrasted with APHA in only 50% of control cases, affecting fewer than 5% of granulocytes in all cases (P < .05). Monolobate neutrophils were exclusive to COVID-19 cases. COVID-19 patients had greater frequency of plasmacytoid lymphocytes (P < .05). Flow cytometry data revealed absolute CD3+ T-cell count reduction in 6 of 7 patients; all of them required mechanical ventilation. Conclusions Lymphopenia was infrequent in our COVID-19 cohort; however, flow cytometric analysis revealed absolute T-cell count reduction in most cases. COVID-19 cases had significant APHA with monolobate neutrophils and plasmacytoid lymphocytes as compared to controls.
- Published
- 2020
45. Grossing Breast Cancer Specimens: A Comprehensive Review
- Author
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Daniel D. Mais, Nella C. Dornbluth, Apeksha N. Agarwal, Jacob Ritter, and Alia Nazarullah
- Subjects
Oncology ,medicine.medical_specialty ,Breast cancer ,business.industry ,Internal medicine ,medicine ,General Medicine ,medicine.disease ,business - Published
- 2020
46. Pediatric post-transplant lymphoproliferative disorder identified on random gastrointestinal biopsies shows non-mass-forming PTLD with clonal plasma cells: report of 2 cases
- Author
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C. Forker, P. Dileep Menon, H. Tariq, A. Nazarullah, R. Alkhateb, and K. Holder
- Subjects
Cytopenia ,Abdominal pain ,medicine.medical_specialty ,Histology ,Hematology ,business.industry ,medicine.disease ,Symptomatic relief ,Gastroenterology ,Post-transplant lymphoproliferative disorder ,Pathology and Forensic Medicine ,Lymphoma ,03 medical and health sciences ,0302 clinical medicine ,hemic and lymphatic diseases ,030220 oncology & carcinogenesis ,Internal medicine ,medicine ,Rituximab ,Hypoalbuminemia ,medicine.symptom ,business ,030215 immunology ,medicine.drug - Abstract
EBV-related lymphoproliferations in post-transplant settings range from non-destructive hyperplasia to polymorphic post-transplant lymphoproliferative disorder (PTLD) to overt lymphoma. Here we present two unusual cases of pediatric non-mass-forming gastrointestinal (GI) PTLDs with mixed pathologic features of non-destructive and polymorphic categories. Both patients were EBV naive and presented within 1 year of transplant with non-specific gastrointestinal symptoms (diarrhea, abdominal pain, and food intolerance) with hypoalbuminemia, cytopenia, and EBV viremia. No mass lesions were found on imaging and endoscopy. Random GI biopsies showed a non-mass-forming, but polymorphic-appearing lymphoid infiltrate with EBV positivity, monotypic plasma cells, and clonal B cells. Cyclophosphamide, steroids, and rituximab treatment had good clinical response in all cases, including one case which had poor response initially with rituximab alone. Based on these cases, we conclude that GI PTLD in children can present with vague abdominal symptoms, cytopenia, and hypoalbuminemia, and can be non-mass-forming and non-destructive. A high level of suspicion with random GI biopsies and clinicopathologic and laboratory correlation are required. Since these patients have no mass lesions, evaluating symptomatic relief, EBV viral load, improvement in cytopenia(s), serum albumin levels, and/or resolution of other systemic symptoms may be needed to monitor response to therapy.
- Published
- 2020
47. Everolimus Inhibits the Progression of Ductal Carcinoma In Situ to Invasive Breast Cancer Via Downregulation of MMP9 Expression
- Author
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Virginia G. Kaklamani, Alia Nazarullah, Hakim Bouamar, Andrew Brenner, Kyle Pressley, Lu-Zhe Sun, Xiao Fei Ding, Guang Chen, Bingzhi Wang, Guixi Zheng, Ismail Jatoi, and Larry E. Broome
- Subjects
0301 basic medicine ,Cancer Research ,Mammary tumor ,Everolimus ,business.industry ,mTORC1 ,Ductal carcinoma ,medicine.disease ,body regions ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Breast cancer ,Oncology ,In vivo ,030220 oncology & carcinogenesis ,Cancer cell ,medicine ,Cancer research ,Immunohistochemistry ,skin and connective tissue diseases ,business ,neoplasms ,medicine.drug - Abstract
Purpose: We evaluated the role of everolimus in the prevention of ductal carcinoma in situ (DCIS) to invasive ductal carcinoma (IDC) progression. Experimental Design: The effects of everolimus on breast cancer cell invasion, DCIS formation, and DCIS progression to IDC were investigated in a 3D cell culturing model, intraductal DCIS xenograft model, and spontaneous MMTV-Her2/neu mouse model. The effect of everolimus on matrix metalloproteinase 9 (MMP9) expression was determined with Western blotting and IHC in these models and in patients with DCIS before and after a window trial with rapamycin. Whether MMP9 mediates the inhibition of DCIS progression to IDC by everolimus was investigated with knockdown or overexpression of MMP9 in breast cancer cells. Results: Everolimus significantly inhibited the invasion of human breast cancer cells in vitro. Daily intragastric treatment with everolimus for 7 days significantly reduced the number of invasive lesions from intraductal DCIS foci and inhibited DCIS progression to IDC in the MMTV-Her2/neu mouse mammary tumor model. Mechanistically, everolimus treatment decreased the expression of MMP9 in the in vitro and in vivo models, and in breast tissues from patients with DCIS treated with rapamycin for 1 week. Moreover, overexpression of MMP9 stimulated the invasion, whereas knockdown of MMP9 inhibited the invasion of breast cancer cell–formed spheroids in vitro and DCIS in vivo. Knockdown of MMP9 also nullified the invasion inhibition by everolimus in vitro and in vivo. Conclusions: Targeting mTORC1 can inhibit DCIS progression to IDC via MMP9 and may be a potential strategy for DCIS or early-stage IDC therapy.
- Published
- 2020
48. Incidental Microscopic Granulosa Cell Proliferations
- Author
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Alia Nazarullah, Philip T. Valente, and Preethi Dileep Menon
- Subjects
0301 basic medicine ,endocrine system ,Pathology ,medicine.medical_specialty ,Granulosa cell ,Endometriosis ,Ovary ,Pathology and Forensic Medicine ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Humans ,Cyst ,Clinical significance ,Granulosa cell proliferation ,Incidental Findings ,Granulosa Cells ,Cysts ,business.industry ,Obstetrics and Gynecology ,medicine.disease ,030104 developmental biology ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Female ,Calretinin ,Differential diagnosis ,business - Abstract
Microscopic granulosa cell proliferations are rare incidental findings in ovarian and extraovarian tissue, and can simulate granulosa cell tumors. We report a case of a 22-yr-old nulliparous woman with incidental microscopic granulosa cell proliferation in the wall of an endometriotic cyst. Excision of the cyst revealed extensive endometriosis and incidental microscopic nests and cords of granulosa cells measuring 1.5 mm and positive for inhibin A and calretinin. A rare Call-Exner body was noted. An extensive literature review of both ovarian and extraovarian granulosa cell proliferations were performed to determine their possible origin, variable morphologic features and differential diagnosis. Forty-seven cases were identified occurring in pregnant (26%) and nonpregnant (74%) settings. The nonpregnant cases reveal an association with endometriosis and endometrioid adenocarcinomas. Follow-up data is very limited, but no reports of subsequent granulosa cell tumors are reported. We hypothesize that possible anovulation may play a role in the development of these proliferations. Because of unknown pathogenesis and limited follow-up data being available, their clinical significance and risk of neoplasia remain unclear.
- Published
- 2020
49. mTOR Inhibition Abrogates Human Mammary Stem Cells and Early Breast Cancer Progression Markers
- Author
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Hakim Bouamar, Larry Esteban Broome, Kate Lathrop, Ismail Jatoi, Andrew J. Brenner, Alia Nazarullah, Karla M. Gorena, Michael Garcia, Yidong Chen, Virginia Kaklamani, and LuZhe Sun
- Subjects
History ,Polymers and Plastics ,Business and International Management ,Industrial and Manufacturing Engineering - Published
- 2022
50. Abstract A004: Development and validation of a convolutional neural network to identify ductal carcinoma in situ in lumpectomy margins using wide field optical coherence tomography
- Author
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David Rempel, Andrew Berkeley, Alastair Thompson, Savitri Krishnamurthy, Beryl Augustine, Kelly Hunt, Ismail Jatoi, Alia Nazarullah, Chandandeep Nagi, and Yanir Levy
- Subjects
Cancer Research ,Oncology - Abstract
Purpose: To develop and validate a convolutional neural network (CNN) to identify regions of interest (ROIs) suspicious for ductal carcinoma in situ (DCIS) and residual malignancy in lumpectomy margins using wide-field optical coherence tomography (WF-OCT). Background: WF-OCT is the optical analog of high-frequency ultrasound and produces high-resolution intraoperative imaging in real time, with a tissue penetration depth up to 2 mm. Multi-reader studies of WF-OCT have demonstrated the ability to differentiate normal breast parenchyma from neoplasms with greater than 85% sensitivity and specificity. Intraoperative evaluation of lumpectomy specimens using WF-OCT may aid in achieving negative margins at the time of primary surgery and avoid re-excisions. CNNs, a form of artificial intelligence (AI), can be trained to spot ROIs in WF-OCT images of margins suspicious for DCIS and, more generally, residual malignancy. Methods: Lumpectomy margins from 126 patients with ductal malignancy were imaged using WF-OCT, compared to permanent histology (PH), and annotated by board-certified breast pathologists to create a training set of 25,000 control ROIs. A CNN algorithm was developed with 3 convolutional layers, a 3x3 kernel, and 3 fully connected layers to perform binary classification of images as either “suspicious” or “non-suspicious” for malignancy. A weighted loss function was implemented to balance the training data available for non-suspicious vs. suspicious images and to tune sensitivity and specificity. Once trained and properly weighted, the CNN was tested in a prospective study using WF-OCT images of margins from 29 lumpectomy specimens from 29 patients with biopsy-proven DCIS, invasive ductal carcinoma (IDC), or both. The CNN results were compared to PH. Results: Patients were 61.5 ± 7.3 years old, 100% female, with Stage 0-1 disease. Disease types included DCIS (n=27), atypical ductal hyperplasia (n=24), IDC (n=20), invasive lobular carcinoma (n=2), mixed (n=74), and benign findings including usual ductal hyperplasia (n=35), atypical lobular hyperplasia (n=19), duct ectasia (n=17), lymphatic invasion (n=13), and lobular carcinoma in situ (n=12). Following primary surgery, fresh margins were scanned using WF-OCT and approximately 1.9M ROIs were analyzed by the CNN, yielding 15,136 as suspicious for malignancy. Overall, four hundred and ten (410) ROIs were correctly identified, yielding a 74% true positive and 0.8% false positive detection rate; sensitivity and specificity were 74.4% and 99.2%, respectively. Specific to DCIS, the CNN demonstrated a 73% true and 0.5% false positive rate; sensitivity and specificity were 73.0% and 99.5%, respectively. Conclusions: Automated analysis of WF-OCT images of lumpectomy specimens, using a trained CNN to identify ROIs suspicious for malignancy is feasible, demonstrating high concordance with PH. Specific to DCIS, the CNN demonstrated equivalent utility with a lower false positive rate. A prospective trial is needed to evaluate specimens in real time to determine improvement in re-excision rates. Citation Format: David Rempel, Andrew Berkeley, Alastair Thompson, Savitri Krishnamurthy, Beryl Augustine, Kelly Hunt, Ismail Jatoi, Alia Nazarullah, Chandandeep Nagi, Yanir Levy. Development and validation of a convolutional neural network to identify ductal carcinoma in situ in lumpectomy margins using wide field optical coherence tomography [abstract]. In: Proceedings of the AACR Special Conference on Rethinking DCIS: An Opportunity for Prevention?; 2022 Sep 8-11; Philadelphia, PA. Philadelphia (PA): AACR; Can Prev Res 2022;15(12 Suppl_1): Abstract nr A004.
- Published
- 2022
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