203 results on '"Nayak KS"'
Search Results
2. Tacrolimus therapeutic drug monitoring and correlation with clinical events – A single-center prospective study
- Author
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Pai, B.H. Santhosh, primary, Prabhu, MayoorV, additional, Karopadi, AkashNayak, additional, Subhramanyam, SreepadaV, additional, and Nayak, KS, additional
- Published
- 2021
- Full Text
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3. Peritoneal dialysis patients during COVID 19 pandemic
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Prasad, Narayan, primary, Jeloka, Tarun, additional, Gupta, Amit, additional, Varughese, Santosh, additional, Mahajan, Sandeep, additional, Nayak, KS, additional, Agarwal, SanjayKumar, additional, and Abraham, Georgi, additional
- Published
- 2020
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4. Nutritional management of peritoneal dialysis patient
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Prabhu, Mayoor, primary and Nayak, KS, additional
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- 2018
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5. 062 THERAPEUTIC DRUG MONITORING OF TACROLIMUS IN RENAL TRANSPLANTATION-IS C6 A BETTER MARKER THAN TROUGH LEVELS?
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Prabhu, Mayoor, primary, Subhramanyam, Sreepada, additional, Sridhar, G, additional, Rao, Pavankumar, additional, and Nayak, KS, additional
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- 2011
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6. Comparison of fat-water MRI and single-voxel MRS in the assessment of hepatic and pancreatic fat fractions in humans.
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Hu HH, Kim HW, Nayak KS, Goran MI, Hu, Houchun H, Kim, Hee-Won, Nayak, Krishna S, and Goran, Michael I
- Abstract
The ability to accurately and noninvasively quantify fatty infiltration in organs such as the liver and the pancreas remains a critical component in understanding the link between obesity and its comorbidities such as type 2 diabetes and fatty liver disease. Single-voxel ((1)H) proton magnetic resonance spectroscopy (MRS) has long been regarded as the gold-standard noninvasive technique for such measurements. Recent advances in three-dimensional fat-water magnetic resonance imaging (MRI) methods have led to the development of rapid, robust, and quantitative approaches that can accurately characterize the proportion of fat and water content in underlying tissues across the full imaging volume, and hence entire organs of interest. One such technique is called IDEAL (Iterative Decomposition with Echo Asymmetry and Least squares estimation). This article prospectively compares three-dimensional (3D) IDEAL-MRI and single-voxel MRS in the assessment of hepatic (HFF) and pancreatic fat fraction (PFF) in 16 healthy subjects. MRS acquisitions took 3-4 min to complete whereas IDEAL acquisitions were completed in 20-s breath-holds. In the liver, there was a strong correlation (slope = 0.90, r(2) = 0.95, P < 0.001) between IDEAL and MRS-based fat fractions. In the pancreas, a poorer agreement between IDEAL and MRS was observed (slope = 0.32, r(2) = 0.51, P < 0.02). The discrepancy of PFF is likely explained by MRS signal contamination from surrounding visceral fat, presumably during respiratory motion. We conclude that IDEAL is equally accurate in characterizing hepatic fat content as MRS, and is potentially better suited for fat quantification in smaller organs such as the pancreas. [ABSTRACT FROM AUTHOR]
- Published
- 2010
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7. "Biased" comparison between ANDY-Disc and UltraBag in patients on CAPD.
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Nayak KS and Nayak, Karopadi Shivanand
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- 2007
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8. Multidimensional RF pulse design with consideration of concomitant field effects.
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Zhao Z, Lee NG, and Nayak KS
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Purpose: To develop a small-tip multidimensional RF pulse design procedure that incorporates linear time-invariant gradient imperfections and concomitant field effects. This could be particularly important for contemporary low-field MRI systems with high-performance gradients., Theory and Methods: We developed an extension of the small-tip excitation k-space formalism, where concomitant fields were approximated as a Bloch-Siegert shift in the rotating frame. This was evaluated using realistic simulations of 2D selective excitation at various field strengths (0.2T, 0.55T, 1.5T, 3T, and 7T) with single and parallel transmit. Simulated excitation profiles from the original and extended k-space formalisms were compared. Experimental validations were performed at 0.55T with a single-channel transmit., Results: The extended formalism provides improved 2D excitation profiles in all scenarios simulated, compared against the original formalism. The proposed method corrects the concomitant field effects on 2D selective excitations for B
0 > 0.2T when the magnitude of the B0 is far larger than that of nonrotating concomitant fields. Simulation and phantom experiments at 0.55T match well for both original and proposed methods, with the proposed method providing sharper and more accurate excitation profiles at off-isocenter distances up to 15 cm. The impact of the proposed method is greatest in scenarios where concomitant fields are substantial, such as low field strengths and off-isocenter., Conclusion: Concomitant fields can be modeled as a Bloch-Siegert shift in the rotating frame during multidimensional RF pulse design, resulting in improved excitation profiles with sharp edges. This is important to consider for off-isocenter excitations and imaging at low field strengths with strong gradients., (© 2024 The Author(s). Magnetic Resonance in Medicine published by Wiley Periodicals LLC on behalf of International Society for Magnetic Resonance in Medicine.)- Published
- 2024
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9. Diffusion tensor brain imaging at 0.55T: A feasibility study.
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Kung HT, Cui SX, Kaplan JT, Joshi AA, Leahy RM, Nayak KS, and Haldar JP
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- Humans, Male, Adult, Reproducibility of Results, Female, Algorithms, Healthy Volunteers, Feasibility Studies, Brain diagnostic imaging, Diffusion Tensor Imaging methods, Signal-To-Noise Ratio, Image Processing, Computer-Assisted methods
- Abstract
Purpose: To investigate the feasibility of diffusion tensor brain imaging at 0.55T with comparisons against 3T., Methods: Diffusion tensor imaging data with 2 mm isotropic resolution was acquired on a cohort of five healthy subjects using both 0.55T and 3T scanners. The signal-to-noise ratio (SNR) of the 0.55T data was improved using a previous SNR-enhancing joint reconstruction method that jointly reconstructs the entire set of diffusion weighted images from k-space using shared-edge constraints. Quantitative diffusion tensor parameters were estimated and compared across field strengths. We also performed a test-retest assessment of repeatability at each field strength., Results: After applying SNR-enhancing joint reconstruction, the diffusion tensor parameters obtained from 0.55T data were strongly correlated ( R 2 ≥ 0 . 70 $$ {R}^2\ge 0.70 $$ ) with those obtained from 3T data. Test-retest analysis showed that SNR-enhancing reconstruction improved the repeatability of the 0.55T diffusion tensor parameters., Conclusion: High-resolution in vivo diffusion MRI of the human brain is feasible at 0.55T when appropriate noise-mitigation strategies are applied., (© 2024 The Authors. Magnetic Resonance in Medicine published by Wiley Periodicals LLC on behalf of International Society for Magnetic Resonance in Medicine.)
- Published
- 2024
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10. T1 and T2 measurements across multiple 0.55T MRI systems using open-source vendor-neutral sequences.
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Keenan KE, Tasdelen B, Javed A, Ramasawmy R, Rizzo R, Martin MN, Stupic KF, Seiberlich N, Campbell-Washburn AE, and Nayak KS
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- Humans, Reproducibility of Results, Male, Adult, Female, Algorithms, Image Interpretation, Computer-Assisted methods, Image Processing, Computer-Assisted methods, Equipment Design, Sensitivity and Specificity, Magnetic Resonance Imaging methods, Phantoms, Imaging
- Abstract
Purpose: To compare T1 and T2 measurements across commercial and prototype 0.55T MRI systems in both phantom and healthy participants using the same vendor-neutral pulse sequences, reconstruction, and analysis methods., Methods: Standard spin echo measurements and abbreviated protocol measurements of T1, B1, and T2 were made on two prototype 0.55 T systems and two commercial 0.55T systems using an ISMRM/NIST system phantom. Additionally, five healthy participants were imaged at each system using the abbreviated protocol for T1, B1, and T2 measurement. The phantom measurements were compared to NMR-based reference measurements to determine accuracy, and both phantom and in vivo measurements were compared to assess reproducibility and differences between the prototype and commercial systems., Results: Vendor-neutral sequences were implemented across all four systems, and the code for pulse sequences and reconstruction is freely available. For participants, there was no difference in the mean T1 and T2 relaxation times between the prototype and commercial systems. In the phantom, there were no significant differences between the prototype and commercial systems for T1 and T2 measurements using the abbreviated protocol., Conclusion: Quantitative T1 and T2 measurements at 0.55T in phantom and healthy participants are not statistically different across the prototype and commercial systems., (© 2024 International Society for Magnetic Resonance in Medicine. This article has been contributed to by U.S. Government employees and their work is in the public domain in the USA.)
- Published
- 2025
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11. Comprehensive assessment of nonuniform image quality: Application to imaging near metal.
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Toews AR, Lee PK, Nayak KS, and Hargreaves BA
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- Algorithms, Humans, Signal-To-Noise Ratio, Reproducibility of Results, Image Enhancement methods, Sensitivity and Specificity, Image Interpretation, Computer-Assisted methods, Image Processing, Computer-Assisted methods, Phantoms, Imaging, Metals, Magnetic Resonance Imaging methods, Artifacts
- Abstract
Purpose: Comprehensive assessment of image quality requires accounting for spatial variations in (i) intensity artifact, (ii) geometric distortion, (iii) signal-to-noise ratio (SNR), and (iv) spatial resolution, among other factors. This work presents an ensemble of methods to meet this need, from phantom design to image analysis, and applies it to the scenario of imaging near metal., Methods: A modular phantom design employing a gyroid lattice is developed to enable the co-registered volumetric quantitation of image quality near a metallic hip implant. A method for measuring spatial resolution by means of local point spread function (PSF) estimation is presented and the relative fitness of gyroid and cubic lattices is examined. Intensity artifact, geometric distortion, and SNR maps are also computed. Results are demonstrated with 2D-FSE and MAVRIC-SL scan protocols on a 3T MRI scanner., Results: The spatial resolution method demonstrates a worst-case error of 0.17 pixels for measuring in-plane blurring up to 3 pixels (full width at half maximum). The gyroid outperforms a cubic lattice design for the local PSF estimation task. The phantom supports four configurations toggling the presence/absence of both metal and structure with good spatial correspondence for co-registered analysis of the four quality factors. The marginal scan time to evaluate one scan protocol amounts to five repetitions. The phantom design can be fabricated in 2 days at negligible material cost., Conclusion: The phantom and associated analysis methods can elucidate complex image quality trade-offs involving intensity artifact, geometric distortion, SNR, and spatial resolution. The ensemble of methods is suitable for benchmarking imaging performance near metal., (© 2024 International Society for Magnetic Resonance in Medicine.)
- Published
- 2024
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12. Improved abdominal T1 weighted imaging at 0.55T.
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Tasdelen B, Lee NG, Cui SX, and Nayak KS
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- Humans, Imaging, Three-Dimensional methods, Liver diagnostic imaging, Algorithms, Male, Adult, Image Processing, Computer-Assisted methods, Female, Adipose Tissue diagnostic imaging, Image Interpretation, Computer-Assisted methods, Magnetic Resonance Imaging methods, Abdomen diagnostic imaging
- Abstract
Purpose: Breath-held fat-suppressed volumetric T1-weighted MRI is an important and widely-used technique for evaluating the abdomen. Both fat-saturation and Dixon-based fat-suppression methods are used at conventional field strengths; however, both have challenges at lower field strengths (<1.5T) due to insufficient fat suppression and/or inadequate resolution. Specifically, at lower field strengths, fat saturation often fails due to the short T1 of lipid; and Cartesian Dixon imaging provides poor spatial resolution due to the need for a long ΔTE, due to the smaller Δf between water and lipid. The purpose of this work is to demonstrate a new approach capable of simultaneously achieving excellent fat suppression and high spatial resolution on a 0.55T whole-body system., Methods: We applied 3D stack-of-spirals Dixon imaging at 0.55T, with compensation of concomitant field phase during reconstruction. The spiral readouts make efficient use of the requisite ΔTE. We compared this with 3D Cartesian Dixon imaging. Experiments were performed in 2 healthy and 10 elevated liver fat volunteers., Results: Stack-of-spirals Dixon imaging at 0.55T makes excellent use of the required ΔTE, provided high SNR efficiency and finer spatial resolution (1.7 × 1.7 × 5 mm
3 ) compared Cartesian Dixon (3.5 × 3.5 × 5 mm3 ), within a 17-s breath-hold. We observed successful fat suppression, and improved definition of structures such as the liver, kidneys, and bowel., Conclusion: We demonstrate that high-resolution single breath-hold volumetric abdominal T1-weighted imaging is feasible at 0.55T using spiral sampling and concomitant field correction. This is an attractive alternative to existing Cartesian-based methods, as it simultaneously provides high-resolution and excellent fat-suppression., (© 2024 The Author(s). Magnetic Resonance in Medicine published by Wiley Periodicals LLC on behalf of International Society for Magnetic Resonance in Medicine.)- Published
- 2024
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13. Erratum to: Velocity-selective arterial spin labeling perfusion MRI: A review of the state of the art and recommendations for clinical implementation (Magn Reson Med. 2022; 88:1528-1547).
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Qin Q, Alsop DC, Bolar DS, Hernandez-Garcia L, Meakin J, Liu D, Nayak KS, Schmid S, van Osch MJP, Wong EC, Woods JG, Zaharchuk G, Zhao MY, Zun Z, and Guo J
- Published
- 2024
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14. Replication of the bSTAR sequence and open-source implementation.
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Lee NG, Bauman G, Bieri O, and Nayak KS
- Subjects
- Humans, Reproducibility of Results, Artifacts, Magnetic Resonance Imaging methods
- Abstract
Purpose: The reproducibility of scientific reports is crucial to advancing human knowledge. This paper is a summary of our experience in replicating a balanced SSFP half-radial dual-echo imaging technique (bSTAR) using open-source frameworks as a response to the 2023 ISMRM "repeat it with me" Challenge., Methods: We replicated the bSTAR technique for thoracic imaging at 0.55T. The bSTAR pulse sequence is implemented in Pulseq, a vendor neutral open-source rapid sequence prototyping environment. Image reconstruction is performed with the open-source Berkeley Advanced Reconstruction Toolbox (BART). The replication of bSTAR, termed open-source bSTAR, is tested by replicating several figures from the published literature. Original bSTAR, using the pulse sequence and image reconstruction developed by the original authors, and open-source bSTAR, with pulse sequence and image reconstruction developed in this work, were performed in healthy volunteers., Results: Both echo images obtained from open-source bSTAR contain no visible artifacts and show identical spatial resolution and image quality to those in the published literature. A direct head-to-head comparison between open-source bSTAR and original bSTAR on a healthy volunteer indicates that open-source bSTAR provides adequate SNR, spatial resolution, level of artifacts, and conspicuity of pulmonary vessels comparable to original bSTAR., Conclusion: We have successfully replicated bSTAR lung imaging at 0.55T using two open-source frameworks. Full replication of a research method solely relying on information on a research paper is unfortunately rare in research, but our success gives greater confidence that a research methodology can be indeed replicated as described., (© 2023 The Authors. Magnetic Resonance in Medicine published by Wiley Periodicals LLC on behalf of International Society for Magnetic Resonance in Medicine.)
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- 2024
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15. Fasting-mimicking diet causes hepatic and blood markers changes indicating reduced biological age and disease risk.
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Brandhorst S, Levine ME, Wei M, Shelehchi M, Morgan TE, Nayak KS, Dorff T, Hong K, Crimmins EM, Cohen P, and Longo VD
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- Adult, Humans, Animals, Mice, Child, Preschool, Longevity, Liver diagnostic imaging, Causality, Diet, Fasting
- Abstract
In mice, periodic cycles of a fasting mimicking diet (FMD) protect normal cells while killing damaged cells including cancer and autoimmune cells, reduce inflammation, promote multi-system regeneration, and extend longevity. Here, we performed secondary and exploratory analysis of blood samples from a randomized clinical trial (NCT02158897) and show that 3 FMD cycles in adult study participants are associated with reduced insulin resistance and other pre-diabetes markers, lower hepatic fat (as determined by magnetic resonance imaging) and increased lymphoid to myeloid ratio: an indicator of immune system age. Based on a validated measure of biological age predictive of morbidity and mortality, 3 FMD cycles were associated with a decrease of 2.5 years in median biological age, independent of weight loss. Nearly identical findings resulted from a second clinical study (NCT04150159). Together these results provide initial support for beneficial effects of the FMD on multiple cardiometabolic risk factors and biomarkers of biological age., (© 2024. The Author(s).)
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- 2024
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16. Real-time water/fat imaging at 0.55T with spiral out-in-out-in sampling.
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Tian Y and Nayak KS
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- Humans, Magnetic Resonance Imaging methods, Heart, Respiration, Water, Image Interpretation, Computer-Assisted methods
- Abstract
Purpose: To develop an efficient and flexible water/fat separated real-time MRI (RT-MRI) method using spiral out-in-out-in (OIOI) sampling and balanced SSFP (bSSFP) at 0.55T., Methods: A bSSFP sequence with golden-angle spiral OIOI readout was developed, capturing three echoes to allow water/fat separation. A low-latency reconstruction that combines all echoes was available for online visualization. An offline reconstruction provided water and fat RT-MRI in two steps: (1) image reconstruction with spatiotemporally constrained reconstruction (STCR) and (2) water/fat separation with hierarchical iterative decomposition of water and fat with echo asymmetry and least-squares estimation (HIDEAL). In healthy volunteers, spiral OIOI was acquired in the wrist during a radial-to-ulnar deviation maneuver, in the heart without breath-hold and cardiac gating, and in the lower abdomen during free-breathing for visualizing small bowel motility., Results: We demonstrate successful water/fat separated RT-MRI for all tested applications. In the wrist, resulting images provided clear depiction of ligament gaps and their interactions during the radial-to-ulnar deviation maneuver. In the heart, water/fat RT-MRI depicted epicardial fat, provided improved delineation of epicardial coronary arteries, and provided high blood-myocardial contrast for ventricular function assessment. In the abdomen, water-only RT-MRI captured small bowel mobility clearly with improved water-fat contrast., Conclusions: We have demonstrated a novel and flexible bSSFP spiral OIOI sequence at 0.55T that can provide water/fat separated RT-MRI with a variety of application-specific temporal resolution and spatial resolution requirements., (© 2023 The Authors. Magnetic Resonance in Medicine published by Wiley Periodicals LLC on behalf of International Society for Magnetic Resonance in Medicine.)
- Published
- 2024
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17. New clinical opportunities of low-field MRI: heart, lung, body, and musculoskeletal.
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Tian Y and Nayak KS
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- Pregnancy, Humans, Female, Prostheses and Implants, Whole Body Imaging, Lung diagnostic imaging, Magnetic Resonance Imaging methods, Heart diagnostic imaging
- Abstract
Contemporary whole-body low-field MRI scanners (< 1 T) present new and exciting opportunities for improved body imaging. The fundamental reason is that the reduced off-resonance and reduced SAR provide substantially increased flexibility in the design of MRI pulse sequences. Promising body applications include lung parenchyma imaging, imaging adjacent to metallic implants, cardiac imaging, and dynamic imaging in general. The lower cost of such systems may make MRI favorable for screening high-risk populations and population health research, and the more open configurations allowed may prove favorable for obese subjects and for pregnant women. This article summarizes promising body applications for contemporary whole-body low-field MRI systems, with a focus on new platforms developed within the past 5 years. This is an active area of research, and one can expect many improvements as MRI physicists fully explore the landscape of pulse sequences that are feasible, and as clinicians apply these to patient populations., (© 2023. The Author(s).)
- Published
- 2024
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18. Cardiac MRI at Low Field Strengths.
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Campbell-Washburn AE, Varghese J, Nayak KS, Ramasawmy R, and Simonetti OP
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- Humans, Myocardium, Radiography, Image Processing, Computer-Assisted methods, Magnetic Resonance Imaging methods, Heart diagnostic imaging
- Abstract
Cardiac MR imaging is well established for assessment of cardiovascular structure and function, myocardial scar, quantitative flow, parametric mapping, and myocardial perfusion. Despite the clear evidence supporting the use of cardiac MRI for a wide range of indications, it is underutilized clinically. Recent developments in low-field MRI technology, including modern data acquisition and image reconstruction methods, are enabling high-quality low-field imaging that may improve the cost-benefit ratio for cardiac MRI. Studies to-date confirm that low-field MRI offers high measurement concordance and consistent interpretation with clinical imaging for several routine sequences. Moreover, low-field MRI may enable specific new clinical opportunities for cardiac imaging such as imaging near metal implants, MRI-guided interventions, combined cardiopulmonary assessment, and imaging of patients with severe obesity. In this review, we discuss the recent progress in low-field cardiac MRI with a focus on technical developments and early clinical validation studies. EVIDENCE LEVEL: 5 TECHNICAL EFFICACY: Stage 1., (© 2023 The Authors. Journal of Magnetic Resonance Imaging published by Wiley Periodicals LLC on behalf of International Society for Magnetic Resonance in Medicine. This article has been contributed to by U.S. Government employees and their work is in the public domain in the USA.)
- Published
- 2024
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19. Speech production real-time MRI at 0.55 T.
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Lim Y, Kumar P, and Nayak KS
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- Adult, Humans, Speech, Magnetic Resonance Imaging methods, Tongue diagnostic imaging, Artifacts, Larynx, Voice
- Abstract
Purpose: To demonstrate speech-production real-time MRI (RT-MRI) using a contemporary 0.55T system, and to identify opportunities for improved performance compared with conventional field strengths., Methods: Experiments were performed on healthy adult volunteers using a 0.55T MRI system with high-performance gradients and a custom 8-channel upper airway coil. Imaging was performed using spiral-based balanced SSFP and gradient-recalled echo (GRE) pulse sequences using a temporal finite-difference constrained reconstruction. Speech-production RT-MRI was performed with three spiral readout durations (8.90, 5.58, and 3.48 ms) to determine trade-offs with respect to articulator contrast, blurring, banding artifacts, and overall image quality., Results: Both spiral GRE and bSSFP captured tongue boundary dynamics during rapid consonant-vowel syllables. Although bSSFP provided substantially higher SNR in all vocal tract articulators than GRE, it suffered from banding artifacts at TR > 10.9 ms. Spiral bSSFP with the shortest readout duration (3.48 ms, TR = 5.30 ms) had the best image quality, with a 1.54-times boost in SNR compared with an equivalent GRE sequence. Longer readout durations led to increased SNR efficiency and blurring in both bSSFP and GRE., Conclusion: High-performance 0.55T MRI systems can be used for speech-production RT-MRI. Spiral bSSFP can be used without suffering from banding artifacts in vocal tract articulators, provide better SNR efficiency, and have better image quality than what is typically achieved at 1.5 T or 3 T., (© 2023 The Authors. Magnetic Resonance in Medicine published by Wiley Periodicals LLC on behalf of International Society for Magnetic Resonance in Medicine.)
- Published
- 2024
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20. Real-time MRI of the moving wrist at 0.55 tesla.
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Chaudhari AJ, Lim Y, Cui SX, Bayne CO, Szabo RM, Boutin RD, and Nayak KS
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- Humans, Motion, Magnetic Resonance Imaging methods, Wrist diagnostic imaging, Wrist Joint diagnostic imaging
- Abstract
Objectives: Magnetic resonance imaging (MRI) using 1.5T or 3.0T systems is routinely employed for assessing wrist pathology; however, due to off-resonance artifacts and high power deposition, these high-field systems have drawbacks for real-time (RT) imaging of the moving wrist. Recently, high-performance 0.55T MRI systems have become available. In this proof-of-concept study, we tested the hypothesis that RT-MRI during continuous, active, and uninterrupted wrist motion is feasible with a high-performance 0.55T system at temporal resolutions below 100 ms and that the resulting images provide visualization of tissues commonly interrogated for assessing dynamic wrist instability., Methods: Participants were scanned during uninterrupted wrist radial-ulnar deviation and clenched fist maneuvers. Resulting images (nominal temporal resolution of 12.7-164.6 ms per image) were assessed for image quality. Feasibility of static MRI to supplement RT-MRI acquisition was also tested., Results: The RT images with temporal resolutions < 100 ms demonstrated low distortion and image artifacts, and higher reader assessment scores. Static MRI scans showed the ability to assess anatomical structures of interest in the wrist., Conclusion: RT-MRI of the wrist at a high temporal resolution, coupled with static MRI, is feasible with a high-performance 0.55T system, and may enable improved assessment of wrist dynamic dysfunction and instability., Advances in Knowledge: Real-time MRI of the moving wrist is feasible with high-performance 0.55T and may improve the evaluation of dynamic dysfunction of the wrist., Competing Interests: Competing interestsSophia X. Cui is an employee of Siemens Healthineers. The remaining authors declare no potential conflicts of interest with respect to the research, authorship, and/or publication of this article.
- Published
- 2023
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21. Submillimeter lung MRI at 0.55 T using balanced steady-state free precession with half-radial dual-echo readout (bSTAR).
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Bauman G, Lee NG, Tian Y, Bieri O, and Nayak KS
- Subjects
- Humans, Retrospective Studies, Lung diagnostic imaging, Magnetic Resonance Imaging methods, Respiration
- Abstract
Purpose: To demonstrate the feasibility of high-resolution morphologic lung MRI at 0.55 T using a free-breathing balanced steady-state free precession half-radial dual-echo imaging technique (bSTAR)., Methods: Self-gated free-breathing bSTAR (TE
1 /TE2 /TR of 0.13/1.93/2.14 ms) lung imaging in five healthy volunteers and a patient with granulomatous lung disease was performed using a 0.55 T MR-scanner. A wobbling Archimedean spiral pole (WASP) trajectory was used to ensure a homogenous coverage of k-space over multiple breathing cycles. WASP uses short-duration interleaves randomly tilted by a small polar angle and rotated by a golden angle about the polar axis. Data were acquired continuously over 12:50 min. Respiratory-resolved images were reconstructed off-line using compressed sensing and retrospective self-gating. Reconstructions were performed with a nominal resolution of 0.9 mm and a reduced isotropic resolution of 1.75 mm corresponding to shorter simulated scan times of 8:34 and 4:17 min, respectively. Analysis of apparent SNR was performed in all volunteers and reconstruction settings., Results: The technique provided artifact-free morphologic lung images in all subjects. The short TR of bSTAR in conjunction with a field strength of 0.55 T resulted in a complete mitigation of off-resonance artifacts in the chest. Mean SNR values in healthy lung parenchyma for the 12:50 min scan were 3.6 ± 0.8 and 24.9 ± 6.2 for 0.9 mm and 1.75 mm reconstructions, respectively., Conclusion: This study demonstrates the feasibility of morphologic lung MRI with a submillimeter isotropic spatial resolution in human subjects with bSTAR at 0.55 T., (© 2023 The Authors. Magnetic Resonance in Medicine published by Wiley Periodicals LLC on behalf of International Society for Magnetic Resonance in Medicine.)- Published
- 2023
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22. Low-field MRI: A report on the 2022 ISMRM workshop.
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Campbell-Washburn AE, Keenan KE, Hu P, Mugler JP 3rd, Nayak KS, Webb AG, Obungoloch J, Sheth KN, Hennig J, Rosen MS, Salameh N, Sodickson DK, Stein JM, Marques JP, and Simonetti OP
- Subjects
- Humans, Software, Magnetic Resonance Imaging methods, Radiology
- Abstract
In March 2022, the first ISMRM Workshop on Low-Field MRI was held virtually. The goals of this workshop were to discuss recent low field MRI technology including hardware and software developments, novel methodology, new contrast mechanisms, as well as the clinical translation and dissemination of these systems. The virtual Workshop was attended by 368 registrants from 24 countries, and included 34 invited talks, 100 abstract presentations, 2 panel discussions, and 2 live scanner demonstrations. Here, we report on the scientific content of the Workshop and identify the key themes that emerged. The subject matter of the Workshop reflected the ongoing developments of low-field MRI as an accessible imaging modality that may expand the usage of MRI through cost reduction, portability, and ease of installation. Many talks in this Workshop addressed the use of computational power, efficient acquisitions, and contemporary hardware to overcome the SNR limitations associated with low field strength. Participants discussed the selection of appropriate clinical applications that leverage the unique capabilities of low-field MRI within traditional radiology practices, other point-of-care settings, and the broader community. The notion of "image quality" versus "information content" was also discussed, as images from low-field portable systems that are purpose-built for clinical decision-making may not replicate the current standard of clinical imaging. Speakers also described technical challenges and infrastructure challenges related to portability and widespread dissemination, and speculated about future directions for the field to improve the technology and establish clinical value., (© 2023 International Society for Magnetic Resonance in Medicine. This article has been contributed to by U.S. Government employees and their work is in the public domain in the USA.)
- Published
- 2023
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23. Body composition profiling at 0.55T: Feasibility and precision.
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Nayak KS, Cui SX, Tasdelen B, Yagiz E, Weston S, Zhong X, and Ahlgren A
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- Adult, Humans, Middle Aged, Feasibility Studies, Body Composition, Water, Adipose Tissue diagnostic imaging, Magnetic Resonance Imaging methods
- Abstract
Purpose: Body composition MRI captures the distribution of fat and lean tissues throughout the body, and provides valuable biomarkers of obesity, metabolic disease, and muscle disorders, as well as risk assessment. Highly reproducible protocols have been developed for 1.5T and 3T MRI. The purpose of this work was to demonstrate the feasibility and test-retest repeatability of MRI body composition profiling on a 0.55T whole-body system., Methods: Healthy adult volunteers were scanned on a whole-body 0.55T MRI system using the integrated body RF coil. Experiments were performed to refine parameter settings such as TEs, resolution, flip angle, bandwidth, acceleration, and oversampling factors. The final protocol was evaluated using a test-retest study with subject removal and replacement in 10 adult volunteers (5 M/5F, age 25-60, body mass index 20-30)., Results: Compared to 1.5T and 3T, the optimal flip angle at 0.55T was higher (15°), due to the shorter T1 times, and the optimal echo spacing was larger, due to smaller chemical shift between water and fat. Overall image quality was comparable to conventional field strengths, with no significant issues with fat/water swapping or inadequate SNR. Repeatability coefficient of visceral fat, subcutaneous fat, total thigh muscle volume, muscle fat infiltration, and liver fat were 11.8 cL (2.2%), 46.9 cL (1.9%), 14.6 cL (0.5%), 0.1 pp (2%), and 0.2 pp (5%), respectively (coefficient of variation in parenthesis)., Conclusions: We demonstrate that 0.55T body composition MRI is feasible and present optimized scan parameters. The resulting images provide satisfactory quality for automated post-processing and produce repeatable results., (© 2023 The Authors. Magnetic Resonance in Medicine published by Wiley Periodicals LLC on behalf of International Society for Magnetic Resonance in Medicine.)
- Published
- 2023
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24. Effects of Dietary Sugar Reduction on Biomarkers of Cardiometabolic Health in Latino Youth: Secondary Analyses from a Randomized Controlled Trial.
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Schmidt KA, Mokhtari P, Holzhausen EA, Alderete TL, Allayee H, Nayak KS, Sinatra FR, Pickering TA, Mack W, Kohli R, and Goran MI
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- Adolescent, Humans, Biomarkers, Carbohydrates, Cross-Sectional Studies, Hispanic or Latino, Obesity, Triglycerides, Tumor Necrosis Factor-alpha, Cardiovascular Diseases prevention & control, Dietary Sugars, Cardiometabolic Risk Factors
- Abstract
Pediatric obesity and cardiometabolic disease disproportionately impact minority communities. Sugar reduction is a promising prevention strategy with consistent cross-sectional associations of increased sugar consumption with unfavorable biomarkers of cardiometabolic disease. Few trials have tested the efficacy of pediatric sugar reduction interventions. Therefore, in a parallel-design trial, we randomized Latino youth with obesity (BMI ≥ 95th percentile) [ n = 105; 14.8 years] to control (standard diet advice) or sugar reduction (clinical intervention with a goal of ≤10% of calories from free sugar) for 12-weeks. Outcomes included changes in glucose tolerance and its determinants as assessed by a 2-h frequently sample oral glucose tolerance test, fasting serum lipid profile (total cholesterol, HDL, LDL, triglycerides, cholesterol:HDL), and inflammatory markers (CRP, IL-6, TNF-α). Free sugar intake decreased in the intervention group compared to the control group [11.5% to 7.3% vs. 13.9% to 10.7% (% Energy), respectively, p = 0.02], but there were no effects on any outcome of interest ( p
all > 0.07). However, an exploratory analysis revealed that sugar reduction, independent of randomization, was associated with an improved Oral-disposition index ( p < 0.001), triglycerides ( p = 0.049), and TNF-α ( p = 0.02). Dietary sugar reduction may have the potential to reduce chronic disease risks through improvements in beta-cell function, serum triglycerides, and inflammatory markers in Latino adolescents with obesity.- Published
- 2023
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25. Evaluation of a novel 8-channel RX coil for speech production MRI at 0.55 T.
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Muñoz F, Lim Y, Cui SX, Stark H, and Nayak KS
- Subjects
- Adult, Humans, Signal-To-Noise Ratio, Head, Volunteers, Phantoms, Imaging, Speech, Magnetic Resonance Imaging methods
- Abstract
Objective: Speech production MRI benefits from lower magnetic fields due to reduced off-resonance effects at air-tissue interfaces and from the use of dedicated receiver coils due to higher SNR and parallel imaging capability. Here we present a custom designed upper airway coil for
1 H imaging at 0.55 Tesla and evaluate its performance in comparison with a vendor-provided prototype 16-channel head/neck coil., Materials and Methods: Four adult volunteers were scanned with both custom speech and prototype head-neck coils. We evaluated SNR gains of each of the coils over eleven upper airway volumes-of-interest measured relative to the integrated body coil. We evaluated parallel imaging performance of both coils by computing g-factors for SENSE reconstruction of uniform and variable density Cartesian sampling schemes with R = 2, 3, and 4., Results: The dedicated coil shows approximately 3.5-fold SNR efficiency compared to the head-neck coil. For R = 2 and 3, both uniform and variable density samplings have g-factor values below 1.1 in the upper airway region. For R = 4, g-factor values are higher for both trajectories., Discussion: The dedicated coil configuration allows for a significant SNR gain over the head-neck coil in the articulators. This, along with favorable g values, makes the coil useful in speech production MRI., (© 2022. The Author(s), under exclusive licence to European Society for Magnetic Resonance in Medicine and Biology (ESMRMB).)- Published
- 2023
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26. Low-field 0.55 T MRI evaluation of the fetus.
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Ponrartana S, Nguyen HN, Cui SX, Tian Y, Kumar P, Wood JC, and Nayak KS
- Subjects
- Humans, Acoustics, Artifacts, Fetus diagnostic imaging, Magnetic Resonance Imaging methods
- Abstract
Fetal magnetic resonance imaging (MRI) is an important adjunct modality for the evaluation of fetal abnormalities. Recently, low-field MRI systems at 0.55 Tesla have become available which can produce images on par with 1.5 Tesla systems but with lower power deposition, acoustic noise, and artifact. In this article, we describe a technical innovation using low-field MRI to perform diagnostic quality fetal MRI., (© 2023. The Author(s).)
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- 2023
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27. Update on state-of-the-art for arterial spin labeling (ASL) human perfusion imaging outside of the brain.
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Taso M, Aramendía-Vidaurreta V, Englund EK, Francis S, Franklin S, Madhuranthakam AJ, Martirosian P, Nayak KS, Qin Q, Shao X, Thomas DL, Zun Z, and Fernández-Seara MA
- Subjects
- Pregnancy, Female, Humans, Spin Labels, Magnetic Resonance Imaging methods, Perfusion, Perfusion Imaging, Cerebrovascular Circulation physiology, Magnetic Resonance Angiography methods, Brain diagnostic imaging, Brain physiology
- Abstract
This review article provides an overview of developments for arterial spin labeling (ASL) perfusion imaging in the body (i.e., outside of the brain). It is part of a series of review/recommendation papers from the International Society for Magnetic Resonance in Medicine (ISMRM) Perfusion Study Group. In this review, we focus on specific challenges and developments tailored for ASL in a variety of body locations. After presenting common challenges, organ-specific reviews of challenges and developments are presented, including kidneys, lungs, heart (myocardium), placenta, eye (retina), liver, pancreas, and muscle, which are regions that have seen the most developments outside of the brain. Summaries and recommendations of acquisition parameters (when appropriate) are provided for each organ. We then explore the possibilities for wider adoption of body ASL based on large standardization efforts, as well as the potential opportunities based on recent advances in high/low-field systems and machine-learning. This review seeks to provide an overview of the current state-of-the-art of ASL for applications in the body, highlighting ongoing challenges and solutions that aim to enable more widespread use of the technique in clinical practice., (© 2023 International Society for Magnetic Resonance in Medicine.)
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- 2023
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28. Erratum to: Velocity-selective arterial spin labeling perfusion MRI: A review of the state of the art and recommendations for clinical implementation (Magn Reson Med. 2022; 88:1528-1547).
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Qin Q, Alsop DC, Bolar DS, Hernandez-Garcia L, Meakin J, Liu D, Nayak KS, Schmid S, van Osch MJP, Wong EC, Woods JG, Zaharchuk G, Zhao MY, Zun Z, and Guo J
- Published
- 2023
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29. Contrast-optimal simultaneous multi-slice bSSFP cine cardiac imaging at 0.55 T.
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Tian Y, Cui SX, Lim Y, Lee NG, Zhao Z, and Nayak KS
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- Humans, Magnetic Resonance Imaging methods, Heart Ventricles, Myocardium, Magnetic Resonance Imaging, Cine methods, Image Interpretation, Computer-Assisted methods, Heart diagnostic imaging
- Abstract
Purpose: To determine if contemporary 0.55 T MRI supports the use of contrast-optimal flip angles (FA) for simultaneous multi-slice (SMS) balanced SSFP (bSSFP) cardiac function assessment, which is impractical at conventional field strengths because of excessive SAR and/or banding artifacts., Methods: Blipped-CAIPI bSSFP was combined with spiral sampling for ventricular function assessment at 0.55 T. Cine movies with single band and SMS factors of 2 and 3 (SMS 2 and 3), and FA ranging from 60° to 160°, were acquired in seven healthy volunteers. Left ventricular blood and myocardial signal intensity (SI) normalized by background noise and blood-myocardium contrast were measured and compared across acquisition settings., Results: Myocardial SI was slightly higher in single band than in SMS and decreased with an increasing FA. Blood SI increased as the FA increased for single band, and increment was small for FA ≥120°. Blood SI for SMS 2 and 3 increased with an increasing FA up to ∼100°. Blood-myocardium contrast increased with an increasing FA for single band, peaked at FA = 160° (systole: 28.43, diastole: 29.15), attributed mainly to reduced myocardial SI when FA ≥120°. For SMS 2, contrast peaked at 120° (systole: 21.43, diastole: 19.85). For SMS 3, contrast peaked at 120° in systole (16.62) and 100° in diastole (19.04)., Conclusions: Contemporary 0.55 T MR scanners equipped with high-performance gradient systems allow the use of contrast-optimal FA for SMS accelerated bSSFP cine examinations without compromising image quality. The contrast-optimal FA was found to be 140° to 160° for single band and 100° to 120° for SMS 2 and 3., (© 2022 The Authors. Magnetic Resonance in Medicine published by Wiley Periodicals LLC on behalf of International Society for Magnetic Resonance in Medicine.)
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- 2023
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30. Velocity-selective arterial spin labeling perfusion MRI: A review of the state of the art and recommendations for clinical implementation.
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Qin Q, Alsop DC, Bolar DS, Hernandez-Garcia L, Meakin J, Liu D, Nayak KS, Schmid S, van Osch MJP, Wong EC, Woods JG, Zaharchuk G, Zhao MY, Zun Z, and Guo J
- Subjects
- Magnetic Resonance Imaging, Perfusion, Spin Labels, Cerebrovascular Circulation, Magnetic Resonance Angiography methods
- Abstract
This review article provides an overview of the current status of velocity-selective arterial spin labeling (VSASL) perfusion MRI and is part of a wider effort arising from the International Society for Magnetic Resonance in Medicine (ISMRM) Perfusion Study Group. Since publication of the 2015 consensus paper on arterial spin labeling (ASL) for cerebral perfusion imaging, important advancements have been made in the field. The ASL community has, therefore, decided to provide an extended perspective on various aspects of technical development and application. Because VSASL has the potential to become a principal ASL method because of its unique advantages over traditional approaches, an in-depth discussion was warranted. VSASL labels blood based on its velocity and creates a magnetic bolus immediately proximal to the microvasculature within the imaging volume. VSASL is, therefore, insensitive to transit delay effects, in contrast to spatially selective pulsed and (pseudo-) continuous ASL approaches. Recent technical developments have improved the robustness and the labeling efficiency of VSASL, making it a potentially more favorable ASL approach in a wide range of applications where transit delay effects are of concern. In this review article, we (1) describe the concepts and theoretical basis of VSASL; (2) describe different variants of VSASL and their implementation; (3) provide recommended parameters and practices for clinical adoption; (4) describe challenges in developing and implementing VSASL; and (5) describe its current applications. As VSASL continues to undergo rapid development, the focus of this review is to summarize the fundamental concepts of VSASL, describe existing VSASL techniques and applications, and provide recommendations to help the clinical community adopt VSASL., (© 2022 The Authors. Magnetic Resonance in Medicine published by Wiley Periodicals LLC on behalf of International Society for Magnetic Resonance in Medicine.)
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- 2022
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31. MaxGIRF: Image reconstruction incorporating concomitant field and gradient impulse response function effects.
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Lee NG, Ramasawmy R, Lim Y, Campbell-Washburn AE, and Nayak KS
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- Humans, Image Processing, Computer-Assisted methods, Magnetic Resonance Imaging methods, Phantoms, Imaging, Algorithms, Artifacts
- Abstract
Purpose: To develop and evaluate an improved strategy for compensating concomitant field effects in non-Cartesian MRI at the time of image reconstruction., Theory: We present a higher-order reconstruction method, denoted as MaxGIRF, for non-Cartesian imaging that simultaneously corrects off-resonance, concomitant fields, and trajectory errors without requiring specialized hardware. Gradient impulse response functions are used to predict actual gradient waveforms, which are in turn used to estimate the spatiotemporally varying concomitant fields based on analytic expressions. The result, in combination with a reference field map, is an encoding matrix that incorporates a correction for all three effects., Methods: The MaxGIRF reconstruction is applied to noiseless phantom simulations, spiral gradient-echo imaging of an International Society for Magnetic Resonance in Medicine/National Institute of Standards and Technology phantom, and axial and sagittal multislice spiral spin-echo imaging of a healthy volunteer at 0.55 T. The MaxGIRF reconstruction was compared against previously established concomitant field-compensation and image-correction methods. Reconstructed images are evaluated qualitatively and quantitatively using normalized RMS error. Finally, a low-rank approximation of MaxGIRF is used to reduce computational burden. The accuracy of the low-rank approximation is studied as a function of minimum rank., Results: The MaxGIRF reconstruction successfully mitigated blurring artifacts both in phantoms and in vivo and was effective in regions where concomitant fields counteract static off-resonance, superior to the comparator method. A minimum rank of 8 and 30 for axial and sagittal scans, respectively, gave less than 2% error compared with the full-rank reconstruction., Conclusions: The MaxGIRF reconstruction simultaneously corrects off-resonance, trajectory errors, and concomitant field effects. The impact of this method is greatest when imaging with longer readouts and/or at lower field strength., (© 2022 The Authors. Magnetic Resonance in Medicine published by Wiley Periodicals LLC on behalf of International Society for Magnetic Resonance in Medicine.)
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- 2022
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32. Clinical Intervention to Reduce Dietary Sugar Does Not Affect Liver Fat in Latino Youth, Regardless of PNPLA3 Genotype: A Randomized Controlled Trial.
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Schmidt KA, Jones RB, Rios C, Corona Y, Berger PK, Plows JF, Alderete TL, Fogel J, Hampson H, Hartiala JA, Cai Z, Allayee H, Nayak KS, Sinatra FR, Harlan G, Pickering TA, Salvy SJ, Mack WJ, Kohli R, and Goran MI
- Subjects
- Adolescent, Child, Cross-Sectional Studies, Dietary Sugars, Genetic Predisposition to Disease, Genotype, Hispanic or Latino, Humans, Lipase genetics, Liver, Membrane Proteins genetics, Obesity, Phospholipases genetics, Polymorphism, Single Nucleotide, Retrospective Studies, Non-alcoholic Fatty Liver Disease genetics, Non-alcoholic Fatty Liver Disease prevention & control
- Abstract
Background: Nonalcoholic fatty liver disease (NAFLD) among Latinos is partially attributed to a prevalent C>G polymorphism in the patatin-like phospholipase 3 (PNPLA3) gene. Cross-sectional analyses in Latino children showed the association between dietary sugar and liver fat was exacerbated by GG genotype. Pediatric feeding studies show extreme sugar restriction improves liver fat, but no prior trial has examined the impact of a clinical intervention or whether effects differ by PNPLA3 genotype., Objectives: We aimed to test effects of a clinical intervention to reduce dietary sugar compared with standard dietary advice on change in liver fat, and secondary-endpoint changes in liver fibrosis, liver enzymes, and anthropometrics; and whether effects differ by PNPLA3 genotype (assessed retrospectively) in Latino youth with obesity (BMI ≥ 95th percentile)., Methods: This parallel-design trial randomly assigned participants (n = 105; mean baseline liver fat: 12.7%; mean age: 14.8 y) to control or sugar reduction (goal of ≤10% of calories from free sugar) for 12 wk. Intervention participants met with a dietitian monthly and received delivery of bottled water. Changes in liver fat, by MRI, were assessed by intervention group via general linear models., Results: Mean free sugar intake decreased in intervention compared with control [11.5% to 7.3% compared with 13.9% to 10.7% (% energy), respectively; P = 0.02], but there were no significant effects on liver outcomes or anthropometrics (Pall > 0.10), and no PNPLA3 interactions (Pall > 0.10). In exploratory analyses, participants with whole-body fat mass (FM) reduction (mean ± SD: -1.9 ± 2.4 kg), irrespective of randomization, had significant reductions in liver fat compared with participants without FM reduction (median: -2.1%; IQR: -6.5% to -0.8% compared with 0.3%; IQR: -1.0% to 1.1%; P < 0.001)., Conclusions: In Latino youth with obesity, a dietitian-led sugar reduction intervention did not improve liver outcomes compared with control, regardless of PNPLA3 genotype. Results suggest FM reduction is important for liver fat reduction, confirming clinical recommendations of weight loss and a healthy diet for pediatric NAFLD.This trial was registered at clinicaltrials.gov as NCT02948647., (© The Author(s) 2022. Published by Oxford University Press on behalf of the American Society for Nutrition.)
- Published
- 2022
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33. Effects of B 1 + Heterogeneity on Spin Echo-Based Liver Iron Estimates.
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Doyle EK, Thornton S, Ghugre NR, Coates TD, Nayak KS, and Wood JC
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- Humans, Liver diagnostic imaging, Magnetic Resonance Imaging methods, Prospective Studies, Iron, Iron Overload diagnostic imaging
- Abstract
Background: Liver iron concentration (LIC) measured by MRI has become the clinical reference standard for managing iron overload in chronically transfused patients. Transverse relaxivity (R
2 or R2 * ) measurements are converted to LIC units using empirically derived calibration curves., Hypothesis: That flip angle (FA) error due to B1 + spatial heterogeneity causes significant LIC quantitation error. B1 + scale (b1 , [FAactual /FAspecified ]) variation is a major problem at 3 T which could reduce the accuracy of transverse relaxivity measurements., Study Type: Prospective., Population: Forty-seven subjects with chronic transfusional iron overload undergoing clinically indicated LIC assessment., Field Strength/sequence: 5 T/3 T dual-repetition time B1 + mapping sequence ASSESSMENT: We quantified the average/standard deviation b1 in the right and left lobes of the liver from B1 + maps acquired at 1.5 T and 3 T. The impact of b1 variation on spin echo LIC estimates was determined using a Monte Carlo model., Statistical Tests: Mean, median, and standard deviation in whole liver and right and left lobes; two-sided t-test between whole-liver b1 means., Results: Average b1 within the liver was 99.3% ± 12.3% at 1.5 T versus 69.6% ± 14.6% at 3 T and was independent of iron burden (P < 0.05). Monte Carlo simulations demonstrated that b1 systematically increased R2 estimates at lower LIC (<~25 mg/g at 1.5 T, <~15 mg/g at 3 T) but flattened or even inverted the R2 -LIC relationship at higher LIC (≥~25 mg/g to 1.5 T, ≥~15 mg/g to 3 T); changes in the R2 -LIC relationship were symmetric with respect to over and under excitation and were similar at 1.5 T and 3 T (for the same R2 value). The R2 * -LIC relationship was independent of b1 ., Conclusion: Spin echo R2 measurement of LIC at 3 T is error-prone without correction for b1 errors. The impact of b1 error on current 1.5 T spin echo-based techniques for LIC quantification is large enough to introduce measurable intersubject variability but the in vivo effect size needs a dedicated validation study., Technical Efficacy Stage: 2., (© 2021 International Society for Magnetic Resonance in Medicine.)- Published
- 2022
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34. Real-Time Magnetic Resonance Imaging.
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Nayak KS, Lim Y, Campbell-Washburn AE, and Steeden J
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- Magnetic Resonance Imaging
- Abstract
Real-time magnetic resonance imaging (RT-MRI) allows for imaging dynamic processes as they occur, without relying on any repetition or synchronization. This is made possible by modern MRI technology such as fast-switching gradients and parallel imaging. It is compatible with many (but not all) MRI sequences, including spoiled gradient echo, balanced steady-state free precession, and single-shot rapid acquisition with relaxation enhancement. RT-MRI has earned an important role in both diagnostic imaging and image guidance of invasive procedures. Its unique diagnostic value is prominent in areas of the body that undergo substantial and often irregular motion, such as the heart, gastrointestinal system, upper airway vocal tract, and joints. Its value in interventional procedure guidance is prominent for procedures that require multiple forms of soft-tissue contrast, as well as flow information. In this review, we discuss the history of RT-MRI, fundamental tradeoffs, enabling technology, established applications, and current trends. LEVEL OF EVIDENCE: 5 TECHNICAL EFFICACY STAGE: 1., (© 2020 International Society for Magnetic Resonance in Medicine.)
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- 2022
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35. Sparse precontrast T 1 mapping for high-resolution whole-brain DCE-MRI.
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Zhu Z, Lebel RM, Bliesener Y, Acharya J, Frayne R, and Nayak KS
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- Brain diagnostic imaging, Humans, Neuroimaging, Prospective Studies, Reproducibility of Results, Brain Neoplasms diagnostic imaging, Magnetic Resonance Imaging
- Abstract
Purpose: To develop and evaluate an efficient precontrast T
1 mapping technique suitable for quantitative high-resolution whole-brain dynamic contrast-enhanced-magnetic resonance imaging (DCE-MRI)., Methods: Variable flip angle (VFA) T1 mapping was considered that provides 1 × 1 × 2 mm3 resolution to match a recent high-resolution whole-brain DCE-MRI protocol. Seven FAs were logarithmically spaced from 1.5° to 15°. T1 and M0 maps were estimated using model-based reconstruction. This approach was evaluated using an anatomically realistic brain tumor digital reference object (DRO) with noise-mimicking 3T neuroimaging and fully sampled data acquired from one healthy volunteer. Methods were also applied on fourfold prospectively undersampled VFA data from 13 patients with high-grade gliomas., Results: T1 -mapping precision decreased with undersampling factor R, althoughwhereas bias remained small before a critical R. In the noiseless DRO, T1 bias was <25 ms in white matter (WM) and <11 ms in brain tumor (BT). T1 standard deviation (SD) was <119.5 ms in WM (coefficient of variation [COV] ~11.0%) and <253.2 ms in BT (COV ~12.7%). In the noisy DRO, T1 bias was <50 ms in WM and <30 ms in BT. For R ≤ 10, T1 SD was <107.1 ms in WM (COV ~9.9%) and <240.9 ms in BT (COV ~12.1%). In the healthy subject, T1 bias was <30 ms for R ≤ 16. At R = 4, T1 SD was 171.4 ms (COV ~13.0%). In the prospective brain tumor study, T1 values were consistent with literature values in WM and BT., Conclusion: High-resolution whole-brain VFA T1 mapping is feasible with sparse sampling, supporting its use for quantitative DCE-MRI., (© 2021 The Authors. Magnetic Resonance in Medicine published by Wiley Periodicals LLC on behalf of International Society for Magnetic Resonance in Medicine.)- Published
- 2021
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36. Continuous Ambulatory Peritoneal Dialysis Peritonitis Guidelines - Consensus Statement of Peritoneal Dialysis Society of India - 2020.
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Jeloka TK, Abraham G, Bhalla AK, Balasubramaniam J, Dutta A, Gokulnath, Gupta A, Jha V, Khanna U, Mahajan S, Nayak KS, Prasad KN, Prasad N, Rathi M, Raju S, Rohit A, Sahay M, Sampathkumar K, Sivakumar V, and Varughese S
- Abstract
Continuous ambulatory peritoneal dialysis (CAPD) related peritonitis is a major cause of technique failure, morbidity, and mortality in patients on CAPD. Its prevention and management is key to success of CAPD program. Due to variability in practice, microbiological trends and sensitivity towards antibiotics, there is a need for customized guidelines for management of CAPD related peritonitis (CAPDRP) in India. With this need, Peritoneal Dialysis Society of India (PDSI) organized a structured meeting to discuss various aspects of management of CAPDRP and formulated a consensus agreement which will help in management of patients with CAPDRP., Competing Interests: There are no conflicts of interest., (Copyright: © 2021 Indian Journal of Nephrology.)
- Published
- 2021
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37. Pseudo Test-Retest Evaluation of Millimeter-Resolution Whole-Brain Dynamic Contrast-enhanced MRI in Patients with High-Grade Glioma.
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Bliesener Y, Lebel RM, Acharya J, Frayne R, and Nayak KS
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- Brain Neoplasms pathology, Contrast Media, Female, Glioma pathology, Humans, Image Enhancement methods, Male, Middle Aged, Neoplasm Grading, Reproducibility of Results, Brain Neoplasms diagnostic imaging, Glioma diagnostic imaging, Magnetic Resonance Imaging methods
- Abstract
Background Advances in sub-Nyquist-sampled dynamic contrast-enhanced (DCE) MRI enable monitoring of brain tumors with millimeter resolution and whole-brain coverage. Such undersampled quantitative methods need careful characterization regarding achievable test-retest reproducibility. Purpose To demonstrate a fully automated high-resolution whole-brain DCE MRI pipeline with 30-fold sparse undersampling and estimate its reproducibility on the basis of reference regions of stable tissue types during multiple posttreatment time points by using longitudinal clinical images of high-grade glioma. Materials and Methods Two methods for sub-Nyquist-sampled DCE MRI were extended with automatic estimation of vascular input functions. Continuously acquired three-dimensional k-space data with ramped-up flip angles were partitioned to yield high-resolution, whole-brain tracer kinetic parameter maps with matched precontrast-agent T1 and M
0 maps. Reproducibility was estimated in a retrospective study in participants with high-grade glioma, who underwent three consecutive standard-of-care examinations between December 2016 and April 2019. Coefficients of variation and reproducibility coefficients were reported for histogram statistics of the tracer kinetic parameters plasma volume fraction and volume transfer constant (Ktrans ) on five healthy tissue types. Results The images from 13 participants (mean age ± standard deviation, 61 years ± 10; nine women) with high-grade glioma were evaluated. In healthy tissues, the protocol achieved a coefficient of variation less than 57% for median Ktrans , if Ktrans was estimated consecutively. The maximum reproducibility coefficient for median Ktrans was estimated to be at 0.06 min-1 for large or low-enhancing tissues and to be as high as 0.48 min-1 in smaller or strongly enhancing tissues. Conclusion A fully automated, sparsely sampled DCE MRI reconstruction with patient-specific vascular input function offered high spatial and temporal resolution and whole-brain coverage; in healthy tissues, the protocol estimated median volume transfer constant with maximum reproducibility coefficient of 0.06 min-1 in large, low-enhancing tissue regions and maximum reproducibility coefficient of less than 0.48 min-1 in smaller or more strongly enhancing tissue regions. Published under a CC BY 4.0 license. Online supplemental material is available for this article. See also the editorial by Lenkinski in this issue.- Published
- 2021
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38. Aliasing artifact reduction in spiral real-time MRI.
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Tian Y, Lim Y, Zhao Z, Byrd D, Narayanan S, and Nayak KS
- Subjects
- Magnetic Resonance Imaging, Speech, Artifacts, Image Processing, Computer-Assisted
- Abstract
Purpose: To mitigate a common artifact in spiral real-time MRI, caused by aliasing of signal outside the desired FOV. This artifact frequently occurs in midsagittal speech real-time MRI., Methods: Simulations were performed to determine the likely origin of the artifact. Two methods to mitigate the artifact are proposed. The first approach, denoted as "large FOV" (LF), keeps an FOV that is large enough to include the artifact signal source during reconstruction. The second approach, denoted as "estimation-subtraction" (ES), estimates the artifact signal source before subtracting a synthetic signal representing that source in multicoil k-space raw data. Twenty-five midsagittal speech-production real-time MRI data sets were used to evaluate both of the proposed methods. Reconstructions without and with corrections were evaluated by two expert readers using a 5-level Likert scale assessing artifact severity. Reconstruction time was also compared., Results: The origin of the artifact was found to be a combination of gradient nonlinearity and imperfect anti-aliasing in spiral sampling. The LF and ES methods were both able to substantially reduce the artifact, with an averaged qualitative score improvement of 1.25 and 1.35 Likert levels for LF correction and ES correction, respectively. Average reconstruction time without correction, with LF correction, and with ES correction were 160.69 ± 1.56, 526.43 ± 5.17, and 171.47 ± 1.71 ms/frame., Conclusion: Both proposed methods were able to reduce the spiral aliasing artifacts, with the ES-reduction method being more effective and more time efficient., (© 2021 International Society for Magnetic Resonance in Medicine.)
- Published
- 2021
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39. A multispeaker dataset of raw and reconstructed speech production real-time MRI video and 3D volumetric images.
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Lim Y, Toutios A, Bliesener Y, Tian Y, Lingala SG, Vaz C, Sorensen T, Oh M, Harper S, Chen W, Lee Y, Töger J, Monteserin ML, Smith C, Godinez B, Goldstein L, Byrd D, Nayak KS, and Narayanan SS
- Subjects
- Adolescent, Adult, Computer Systems, Female, Humans, Male, Middle Aged, Time Factors, Video Recording, Young Adult, Larynx physiology, Magnetic Resonance Imaging methods, Speech
- Abstract
Real-time magnetic resonance imaging (RT-MRI) of human speech production is enabling significant advances in speech science, linguistics, bio-inspired speech technology development, and clinical applications. Easy access to RT-MRI is however limited, and comprehensive datasets with broad access are needed to catalyze research across numerous domains. The imaging of the rapidly moving articulators and dynamic airway shaping during speech demands high spatio-temporal resolution and robust reconstruction methods. Further, while reconstructed images have been published, to-date there is no open dataset providing raw multi-coil RT-MRI data from an optimized speech production experimental setup. Such datasets could enable new and improved methods for dynamic image reconstruction, artifact correction, feature extraction, and direct extraction of linguistically-relevant biomarkers. The present dataset offers a unique corpus of 2D sagittal-view RT-MRI videos along with synchronized audio for 75 participants performing linguistically motivated speech tasks, alongside the corresponding public domain raw RT-MRI data. The dataset also includes 3D volumetric vocal tract MRI during sustained speech sounds and high-resolution static anatomical T2-weighted upper airway MRI for each participant., (© 2021. The Author(s).)
- Published
- 2021
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40. Optimizing constrained reconstruction in magnetic resonance imaging for signal detection.
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Pineda AR, Miedema H, Lingala SG, and Nayak KS
- Subjects
- Artifacts, Computer Simulation, Image Processing, Computer-Assisted, Algorithms, Magnetic Resonance Imaging
- Abstract
Constrained reconstruction in magnetic resonance imaging (MRI) allows the use of prior information through constraints to improve reconstructed images. These constraints often take the form of regularization terms in the objective function used for reconstruction. Constrained reconstruction leads to images which appear to have fewer artifacts than reconstructions without constraints but because the methods are typically nonlinear, the reconstructed images have artifacts whose structure is hard to predict. In this work, we compared different methods of optimizing the regularization parameter using a total variation (TV) constraint in the spatial domain and sparsity in the wavelet domain for one-dimensional (2.56×) undersampling using variable density undersampling. We compared the mean squared error (MSE), structural similarity (SSIM), L-curve and the area under the receiver operating characteristic (AUC) using a linear discriminant for detecting a small and a large signal. We used a signal-known-exactly task with varying backgrounds in a simulation where the anatomical variation was the major source of clutter for the detection task. Our results show that the AUC dependence on regularization parameters varies with the imaging task (i.e. the signal being detected). The choice of regularization parameters for MSE, SSIM, L-curve and AUC were similar. We also found that a model-based reconstruction including TV and wavelet sparsity did slightly better in terms of AUC than just enforcing data consistency but using these constraints resulted in much better MSE and SSIM. These results suggest that the increased performance in MSE and SSIM over-estimate the improvement in detection performance for the tasks in this paper. The MSE and SSIM metrics show a big difference in performance where the difference in AUC is small. To our knowledge, this is the first time that signal detection with varying backgrounds has been used to optimize constrained reconstruction in MRI., (© 2021 Institute of Physics and Engineering in Medicine.)
- Published
- 2021
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41. Liver Fat Reduction After Gastric Banding and Associations with Changes in Insulin Sensitivity and β-Cell Function.
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Xiang AH, Martinez MP, Trigo E, Utzschneider KM, Cree-Green M, Arslanian SA, Ehrmann DA, Caprio S, Mohamed PHIH, Hwang DH, Katkhouda N, Nayak KS, and Buchanan TA
- Subjects
- Blood Glucose, Humans, Insulin, Liver, Diabetes Mellitus, Type 2, Gastroplasty, Insulin Resistance, Prediabetic State
- Abstract
Objective: The aim of this study was to examine the relationship between changes in liver fat and changes in insulin sensitivity and β-cell function 2 years after gastric banding surgery., Methods: Data included 23 adults with the surgery who had prediabetes or type 2 diabetes for less than 1 year and BMI 30 to 40 kg/m
2 at baseline. Body adiposity measures including liver fat content (LFC), insulin sensitivity (M/I), and β-cell responses (acute, steady-state, and arginine-stimulated maximum C-peptide) were assessed at baseline and 2 years after surgery. Regression models were used to assess associations adjusted for age and sex., Results: Two years after surgery, all measures of body adiposity, LFC, fasting and 2-hour glucose, and hemoglobin A1c significantly decreased; M/I significantly increased; and β-cell responses adjusted for M/I did not change significantly. Among adiposity measures, reduction in LFC had the strongest association with M/I increase (r = -0.61, P = 0.003). Among β-cell measures, change in LFC was associated with change in acute C-peptide response to arginine at maximal glycemic potentiation adjusted for M/I (r = 0.66, P = 0.007). Significant reductions in glycemic measures and increase in M/I were observed in individuals with LFC loss >2.5%., Conclusions: Reduction in LFC after gastric banding surgery appears to be an important factor associated with long-term improvements in insulin sensitivity and glycemic profiles in adults with obesity and prediabetes or early type 2 diabetes., (© 2021 The Obesity Society.)- Published
- 2021
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42. Region-optimized virtual (ROVir) coils: Localization and/or suppression of spatial regions using sensor-domain beamforming.
- Author
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Kim D, Cauley SF, Nayak KS, Leahy RM, and Haldar JP
- Subjects
- Algorithms, Image Processing, Computer-Assisted, Magnetic Resonance Imaging, Artifacts, Data Compression
- Abstract
Purpose: In many MRI scenarios, magnetization is often excited from spatial regions that are not of immediate interest. Excitation of uninteresting magnetization can complicate the design of efficient imaging methods, leading to either artifacts or acquisitions that are longer than necessary. While there are many hardware- and sequence-based approaches for suppressing unwanted magnetization, this paper approaches this longstanding problem from a different and complementary angle, using beamforming to suppress signals from unwanted regions without modifying the acquisition hardware or pulse sequence. Unlike existing beamforming approaches, we use a spatially invariant sensor-domain approach that can be applied directly to raw data to facilitate image reconstruction., Theory and Methods: We use beamforming to linearly mix a set of original coils into a set of region-optimized virtual (ROVir) coils. ROVir coils optimize a signal-to-interference ratio metric, are easily calculated using simple generalized eigenvalue decomposition methods, and provide coil compression., Results: ROVir coils were compared against existing coil-compression methods, and were demonstrated to have substantially better signal suppression capabilities. In addition, examples were provided in a variety of different application contexts (including brain MRI, vocal tract MRI, and cardiac MRI; accelerated Cartesian and non-Cartesian imaging; and outer volume suppression) that demonstrate the strong potential of this kind of approach., Conclusion: The beamforming-based ROVir framework is simple to implement, has promising capabilities to suppress unwanted MRI signal, and is compatible with and complementary to existing signal suppression methods. We believe that this general approach could prove useful across a wide range of different MRI applications., (© 2021 International Society for Magnetic Resonance in Medicine.)
- Published
- 2021
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43. Improved 3D real-time MRI of speech production.
- Author
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Zhao Z, Lim Y, Byrd D, Narayanan S, and Nayak KS
- Subjects
- Humans, Imaging, Three-Dimensional, Magnetic Resonance Imaging, Retrospective Studies, Tongue diagnostic imaging, Image Processing, Computer-Assisted, Speech
- Abstract
Purpose: To provide 3D real-time MRI of speech production with improved spatio-temporal sharpness using randomized, variable-density, stack-of-spiral sampling combined with a 3D spatio-temporally constrained reconstruction., Methods: We evaluated five candidate (k, t) sampling strategies using a previously proposed gradient-echo stack-of-spiral sequence and a 3D constrained reconstruction with spatial and temporal penalties. Regularization parameters were chosen by expert readers based on qualitative assessment. We experimentally determined the effect of spiral angle increment and k
z temporal order. The strategy yielding highest image quality was chosen as the proposed method. We evaluated the proposed and original 3D real-time MRI methods in 2 healthy subjects performing speech production tasks that invoke rapid movements of articulators seen in multiple planes, using interleaved 2D real-time MRI as the reference. We quantitatively evaluated tongue boundary sharpness in three locations at two speech rates., Results: The proposed data-sampling scheme uses a golden-angle spiral increment in the kx -ky plane and variable-density, randomized encoding along kz . It provided a statistically significant improvement in tongue boundary sharpness score (P < .001) in the blade, body, and root of the tongue during normal and 1.5-times speeded speech. Qualitative improvements were substantial during natural speech tasks of alternating high, low tongue postures during vowels. The proposed method was also able to capture complex tongue shapes during fast alveolar consonant segments. Furthermore, the proposed scheme allows flexible retrospective selection of temporal resolution., Conclusion: We have demonstrated improved 3D real-time MRI of speech production using randomized, variable-density, stack-of-spiral sampling with a 3D spatio-temporally constrained reconstruction., (© 2021 International Society for Magnetic Resonance in Medicine.)- Published
- 2021
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44. Robust autocalibrated structured low-rank EPI ghost correction.
- Author
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Lobos RA, Hoge WS, Javed A, Liao C, Setsompop K, Nayak KS, and Haldar JP
- Subjects
- Algorithms, Artifacts, Brain diagnostic imaging, Phantoms, Imaging, Echo-Planar Imaging, Image Processing, Computer-Assisted
- Abstract
Purpose: We propose and evaluate a new structured low-rank method for echo-planar imaging (EPI) ghost correction called Robust Autocalibrated LORAKS (RAC-LORAKS). The method can be used to suppress EPI ghosts arising from the differences between different readout gradient polarities and/or the differences between different shots. It does not require conventional EPI navigator signals, and is robust to imperfect autocalibration data., Methods: Autocalibrated LORAKS is a previous structured low-rank method for EPI ghost correction that uses GRAPPA-type autocalibration data to enable high-quality ghost correction. This method works well when the autocalibration data are pristine, but performance degrades substantially when the autocalibration information is imperfect. RAC-LORAKS generalizes Autocalibrated LORAKS in two ways. First, it does not completely trust the information from autocalibration data, and instead considers the autocalibration and EPI data simultaneously when estimating low-rank matrix structure. Second, it uses complementary information from the autocalibration data to improve EPI reconstruction in a multi-contrast joint reconstruction framework. RAC-LORAKS is evaluated using simulations and in vivo data, including comparisons to state-of-the-art methods., Results: RAC-LORAKS is demonstrated to have good ghost elimination performance compared to state-of-the-art methods in several complicated EPI acquisition scenarios (including gradient-echo brain imaging, diffusion-encoded brain imaging, and cardiac imaging)., Conclusions: RAC-LORAKS provides effective suppression of EPI ghosts and is robust to imperfect autocalibration data., (© 2020 International Society for Magnetic Resonance in Medicine.)
- Published
- 2021
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45. Is it Safe to Be Transplanted From Living Donors Who Recovered From COVID-19? Experience of 31 Kidney Transplants in a Multicenter Cohort Study From India.
- Author
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Kute VB, Godara S, Guleria S, Ray DS, Aziz F, Hegde U, Sharma A, Nayak KS, Siddini V, Sarkar P, Thukral S, Mondal RRS, Goswami J, Patel HV, Abraham M A, Pathak V, Anandh U, Jha PK, Bavikar S, Bonu RS, Gulati S, B T AK, and Yadav DK
- Subjects
- Adolescent, Adult, Aged, COVID-19 diagnosis, COVID-19 epidemiology, COVID-19 Testing, Child, Cohort Studies, Disease Transmission, Infectious, Female, Humans, India epidemiology, Living Donors, Male, Middle Aged, Pandemics, Retrospective Studies, Risk Factors, Safety, Transplant Recipients, Young Adult, COVID-19 transmission, Kidney Transplantation adverse effects, SARS-CoV-2, Tissue and Organ Procurement
- Abstract
Background: There is lack of data on feasibility and safety of kidney transplants from living donors who recovered from COVID-19., Methods: Here, we present a retrospective cohort study of 31 kidney transplant recipients (KTR) from living donors who recovered from polymerase chain reaction confirmed COVID-19 across 19 transplant centers in India from July 3, 2020, to December 5, 2020. We detailed demographics, clinical manifestations, immunosuppression regimen, treatment, and outcomes. Donors with a previous diagnosis of COVID-19 were accepted after documenting 2 negative polymerase chain reaction tests with complete symptom resolution for at least 28 days and significant social distancing for 14 days before surgery., Results: COVID-19 clinical severity in donors ranged from completely asymptomatic (71%, n = 22) to mild infection (29%, n = 9). None progressed to moderate or severe stages of the disease in the entire clinical course of home treatment. Patient and graft survival was 100%, respectively, with acute cellular rejection being reported in 6.4% (n = 2) recipient. All recipients and donors were asymptomatic with normal creatinine at median follow-up of 44 days after surgery without any complications relating to surgery and COVID-19., Conclusions: Our data support safety of proceeding with living donation for asymptomatic individuals with comprehensive donor, recipients screening before surgery, using a combination of clinical, radiologic, and laboratory criteria. It could provide new insights into the management of KTR from living donors who have recovered from COVID-19 in India. To the best of our knowledge, this remains the largest cohort of KTR from living donors who recovered from COVID-19., Competing Interests: The authors declare no funding or conflicts of interest., (Copyright © 2021 Wolters Kluwer Health, Inc. All rights reserved.)
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- 2021
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46. Improved Glioma Grading Using Deep Convolutional Neural Networks.
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Gutta S, Acharya J, Shiroishi MS, Hwang D, and Nayak KS
- Subjects
- Brain Neoplasms pathology, Glioma pathology, Humans, Image Interpretation, Computer-Assisted methods, Brain Neoplasms diagnostic imaging, Glioma diagnostic imaging, Neoplasm Grading methods, Neural Networks, Computer
- Abstract
Background and Purpose: Accurate determination of glioma grade leads to improved treatment planning. The criterion standard for glioma grading is invasive tissue sampling. Recently, radiomic features have shown excellent potential in glioma-grade prediction. These features may not fully exploit the underlying information in MR images. The objective of this study was to investigate the performance of features learned by a convolutional neural network compared with standard radiomic features for grade prediction., Materials and Methods: A total of 237 patients with gliomas were included in this study. All images were resampled, registered, skull-stripped, and segmented to extract the tumors. The learned features from the trained convolutional neural network were used for grade prediction. The performance of the proposed method was compared with standard machine learning approaches, support vector machine, random forests, and gradient boosting trained with radiomic features., Results: The experimental results demonstrate that using learned features extracted from the convolutional neural network achieves an average accuracy of 87%, outperforming the methods considering radiomic features alone. The top-performing machine learning model is gradient boosting with an average accuracy of 64%. Thus, there is a 23% improvement in accuracy, and it is an efficient technique for grade prediction., Conclusions: Convolutional neural networks are able to learn discriminating features automatically, and these features provide added value for grading gliomas. The proposed framework may provide substantial improvement in glioma-grade prediction; however, further validation is needed., (© 2021 by American Journal of Neuroradiology.)
- Published
- 2021
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47. Deblurring for spiral real-time MRI using convolutional neural networks.
- Author
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Lim Y, Bliesener Y, Narayanan S, and Nayak KS
- Subjects
- Artifacts, Humans, Magnetic Resonance Imaging, Neural Networks, Computer, Algorithms, Image Processing, Computer-Assisted
- Abstract
Purpose: To develop and evaluate a fast and effective method for deblurring spiral real-time MRI (RT-MRI) using convolutional neural networks., Methods: We demonstrate a 3-layer residual convolutional neural networks to correct image domain off-resonance artifacts in speech production spiral RT-MRI without the knowledge of field maps. The architecture is motivated by the traditional deblurring approaches. Spatially varying off-resonance blur is synthetically generated by using discrete object approximation and field maps with data augmentation from a large database of 2D human speech production RT-MRI. The effect of off-resonance range, shift-invariance of blur, and readout durations on deblurring performance are investigated. The proposed method is validated using synthetic and real data with longer readouts, quantitatively using image quality metrics and qualitatively via visual inspection, and with a comparison to conventional deblurring methods., Results: Deblurring performance was found superior to a current autocalibrated method for in vivo data and only slightly worse than an ideal reconstruction with perfect knowledge of the field map for synthetic test data. Convolutional neural networks deblurring made it possible to visualize articulator boundaries with readouts up to 8 ms at 1.5 T, which is 3-fold longer than the current standard practice. The computation time was 12.3 ± 2.2 ms per frame, enabling low-latency processing for RT-MRI applications., Conclusion: Convolutional neural networks deblurring is a practical, efficient, and field map-free approach for the deblurring of spiral RT-MRI. In the context of speech production imaging, this can enable 1.7-fold improvement in scan efficiency and the use of spiral readouts at higher field strengths such as 3 T., (© 2020 International Society for Magnetic Resonance in Medicine.)
- Published
- 2020
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48. Numerical approximation to the general kinetic model for ASL quantification.
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Lee NG, Javed A, Jao TR, and Nayak KS
- Subjects
- Cerebrovascular Circulation, Kinetics, Spin Labels, Arteries, Magnetic Resonance Angiography
- Abstract
Purpose: To develop a numerical approximation to the general kinetic model for arterial spin labeling (ASL) quantification that will enable greater flexibility in ASL acquisition methods., Theory: The Bloch-McConnell equations are extended to include the effects of single-compartment inflow and outflow on both the transverse and longitudinal magnetization. These can be solved using an extension of Jaynes' matrix formalism with piecewise constant approximation of incoming labeled arterial flow and a clearance operator for outgoing venous flow., Methods: The proposed numerical approximation is compared with the general kinetic model using simulations of pulsed labeling and pseudo-continuous labeling and a broad range of transit time and bolus duration for tissue blood flow of 0.6 mL/g/min. Accuracy of the approximation is studied as a function of the timestep using Monte-Carlo simulations. Three additional scenarios are demonstrated: (1) steady-pulsed ASL, (2) MR fingerprinting ASL, and (3) balanced SSFP and spoiled gradient-echo sequences., Results: The proposed approximation was found to be arbitrarily accurate for pulsed labeling and pseudo-continuous labeling. The pulsed labeling/pseudo-continuous labeling approximation error compared with the general kinetic model was less than 0.002% (<0.002%) and less than 0.05% (<0.05%) for timesteps of 3 ms and 35 ms, respectively. The proposed approximation matched well with customized signal expressions of steady-pulsed ASL and MR fingerprinting ASL. The simulations of simultaneous modeling of flow, T
2 , and magnetization transfer showed an increase in steady-state balanced SSFP and spoiled gradient signals., Conclusion: We demonstrate a numerical approximation of the "Bloch-McConnell flow" equations that enables arbitrarily accurate modeling of pulsed ASL and pseudo-continuous labeling signals comparable to the general kinetic model. This enables increased flexibility in the experiment design for quantitative ASL., (© 2020 International Society for Magnetic Resonance in Medicine.)- Published
- 2020
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49. Single-shot EPI for ASL-CMR.
- Author
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Javed A and Nayak KS
- Subjects
- Arteries, Humans, Magnetic Resonance Imaging, Spin Labels, Echo-Planar Imaging, Heart diagnostic imaging
- Abstract
Purpose: To evaluate single-shot echo planar imaging (SS-EPI), as an alternative to snapshot balanced steady state free precession (bSSFP) imaging, for arterial-spin-labeled cardiac MR (ASL-CMR). This study presents a practical implementation SS-EPI tailored to the needs of ASL-CMR at 3T and demonstrates sequential multi-slice ASL with no increase in scan time., Methods: Reduced field of view SS-EPI was performed using a 2DRF pulse. A spin-echo was used with crushers optimized to maximize blood suppression and minimize myocardial signal loss, based on experiments in 4 healthy volunteers. SS-EPI was evaluated against the widely used bSSFP reference method in single-slice ASL-CMR in 4 healthy volunteers, during both systole and diastole. Sequential multi-slice ASL-CMR with SS-EPI was demonstrated during diastole (3 slices: basal, mid, and apical short-axis) and during systole (2 slices: mid and apical short-axis), in 3 volunteers., Results: Global myocardial perfusion for diastolic SS-EPI (1.66 ± 0.73 mL/g/min) and systolic SS-EPI (1.50 ± 0.36 mL/g/min) were found to be statistically equivalent (2 one-sided test with a difference of 0.4 mL/g/min) to diastolic bSSFP (duration of 1 cardiac cycle, 1.60 ± 0.80 mL/g/min) with P-values of 0.022 and 0.031, respectively. Global myocardial perfusion for sequential multi-slice experiments was 1.64 ± 0.47, 1.34 ± 0.29, and 1.88 ± 0.58 for basal, mid, and apical SAX slices during diastole and was 1.61 ± 0.35, and 1.66 ± 0.49 for mid and apical slice during systole. These values are comparable to published ASL-CMR and positron emission tomography studies., Conclusion: SS-EPI is a promising alternative to bSSFP imaging for ASL-CMR and can potentially improve the spatial coverage of ASL-CMR by 3-fold during diastole and 2-fold during systole, without increasing scan time., (© 2020 International Society for Magnetic Resonance in Medicine.)
- Published
- 2020
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50. Improved real-time tagged MRI using REALTAG.
- Author
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Chen W, Lee NG, Byrd D, Narayanan S, and Nayak KS
- Subjects
- Biomechanical Phenomena, Speech, Tongue diagnostic imaging, Language, Magnetic Resonance Imaging
- Abstract
Objectives: To evaluate a novel method for real-time tagged MRI with increased tag persistence using phase sensitive tagging (REALTAG), demonstrated for speech imaging., Methods: Tagging is applied as a brief interruption to a continuous real-time spiral acquisition. REALTAG is implemented using a total tagging flip angle of 180° and a novel frame-by-frame phase sensitive reconstruction to remove smooth background phase while preserving the sign of the tag lines. Tag contrast-to-noise ratio of REALTAG and conventional tagging (total flip angle of 90°) is simulated and evaluated in vivo. The ability to extend tag persistence is tested during the production of vowel-to-vowel transitions by American English speakers., Results: REALTAG resulted in a doubling of contrast-to-noise ratio at each time point and increased tag persistence by more than 1.9-fold. The tag persistence was 1150 ms with contrast-to-noise ratio >6 at 1.5T, providing 2 mm in-plane resolution, 179 frames/s, with 72.6 ms temporal window width, and phase sensitive reconstruction. The new imaging window is able to capture internal tongue deformation over word-to-word transitions in natural speech production., Conclusion: Tag persistence is substantially increased in intermittently tagged real-time MRI by using the improved REALTAG method. This makes it possible to capture longer motion patterns in the tongue, such as cross-word vowel-to-vowel transitions, and provides a powerful new window to study tongue biomechanics., (© 2019 International Society for Magnetic Resonance in Medicine.)
- Published
- 2020
- Full Text
- View/download PDF
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