1. Clinical Proof-of-concept of a Novel Platform Utilizing Biopsy-derived Live Single Cells, Phenotypic Biomarkers, and Machine Learning Toward a Precision Risk Stratification Test for Prostate Cancer Grade Groups 1 and 2 (Gleason 3 + 3 and 3 + 4)
- Author
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David M. Albala, Hani Rashid, Ashok C. Chander, Stephen M. Zappala, Naveen Kella, Jonathan S. Varsanik, Ene Ette, Grannum R. Sant, Vladimir Mouraviev, Michael S. Manak, and Kimberly M. Rieger-Christ
- Subjects
Oncology ,Adult ,Male ,medicine.medical_specialty ,Urology ,medicine.medical_treatment ,Biopsy ,030232 urology & nephrology ,Proof of Concept Study ,Risk Assessment ,Surgical pathology ,Machine Learning ,03 medical and health sciences ,Prostate cancer ,0302 clinical medicine ,Prostate ,Internal medicine ,medicine ,Biomarkers, Tumor ,Tumor Cells, Cultured ,Humans ,Prospective Studies ,Prospective cohort study ,Aged ,Aged, 80 and over ,Receiver operating characteristic ,medicine.diagnostic_test ,business.industry ,Prostatectomy ,Cancer ,Prostatic Neoplasms ,Middle Aged ,medicine.disease ,medicine.anatomical_structure ,Phenotype ,030220 oncology & carcinogenesis ,Neoplasm Grading ,business - Abstract
Objective To examine the ability of a novel live primary-cell phenotypic (LPCP) test to predict postsurgical adverse pathology (P-SAP) features and risk stratify patients based on SAP features in a blinded study utilizing radical prostatectomy (RP) surgical specimens. Methods Two hundred fifty-one men undergoing RP were enrolled in a prospective, multicenter (10), and proof-of-concept study in the United States. Fresh prostate samples were taken from known areas of cancer in the operating room immediately after RP. Samples were shipped and tested at a central laboratory. Utilizing the LPCP test, a suite of phenotypic biomarkers was analyzed and quantified using objective machine vision software. Biomarkers were objectively ranked via machine learning-derived statistical algorithms (MLDSA) to predict postsurgical adverse pathological features. Sensitivity and specificity were determined by comparing blinded predictions and unblinded RP surgical pathology reports, training MLDSAs on 70% of biopsy cells and testing MLDSAs on the remaining 30% of biopsy cells across the tested patient population. Results The LPCP test predicted adverse pathologies post-RP with area under the curve (AUC) via receiver operating characteristics analysis of greater than 0.80 and distinguished between Prostate Cancer Grade Groups 1, 2, and 3/Gleason Scores 3 + 3, 3 + 4, and 4 + 3. Further, LPCP derived-biomarker scores predicted Gleason pattern, stage, and adverse pathology with high precision—AUCs>0.80. Conclusion Using MLDSA-derived phenotypic biomarker scores, the LPCP test successfully risk stratified Prostate Cancer Grade Groups 1, 2, and 3 (Gleason 3 + 3 and 7) into distinct subgroups predicted to have surgical adverse pathologies or not with high performance (>0.85 AUC).
- Published
- 2018