25 results on '"Nathan A. Moss"'
Search Results
2. A Multi-Omics Characterization of the Natural Product Potential of Tropical Filamentous Marine Cyanobacteria
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Tiago Leao, Jon G. Sanders, Gregory Humphrey, Pieter C. Dorrestein, Robert Rex, Nathan A. Moss, Evgenia Glukhov, William H. Gerwick, Nuno Bandeira, Pavel A. Pevzner, Mingxun Wang, Qiyun Zhu, Kelsey L. Alexander, Syrena Whitner, Raphael Reher, Sergey Nurk, Pedro Belda-Ferre, Ricardo Silva, Rob Knight, Alexey Gurevich, and Lena Gerwick
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Cyanobacteria ,natural products ,Pharmaceutical Science ,01 natural sciences ,Genome ,Mass Spectrometry ,chemistry.chemical_compound ,Drug Discovery ,lcsh:QH301-705.5 ,Pharmacology, Toxicology and Pharmaceutics (miscellaneous) ,Chromatography, High Pressure Liquid ,Phylogeny ,0303 health sciences ,Chromatography ,Bacterial ,marine cyanobacteria ,Genomics ,Pharmacology and Pharmaceutical Sciences ,metabolomics ,ALGAS MARINHAS ,High Pressure Liquid ,Multigene Family ,Chemical defense ,Biotechnology ,Physical Chemistry (incl. Structural) ,biosynthetic potential ,Medicinal & Biomolecular Chemistry ,Marine Biology ,Computational biology ,Biology ,Article ,03 medical and health sciences ,Metabolomics ,genomics ,Genetics ,Gene ,Life Below Water ,030304 developmental biology ,Biological Products ,Tropical Climate ,Natural product ,010405 organic chemistry ,Human Genome ,biology.organism_classification ,0104 chemical sciences ,lcsh:Biology (General) ,chemistry ,Multi omics ,Genome, Bacterial - Abstract
Microbial natural products are important for the understanding of microbial interactions, chemical defense and communication, and have also served as an inspirational source for numerous pharmaceutical drugs. Tropical marine cyanobacteria have been highlighted as a great source of new natural products, however, few reports have appeared wherein a multi-omics approach has been used to study their natural products potential (i.e., reports are often focused on an individual natural product and its biosynthesis). This study focuses on describing the natural product genetic potential as well as the expressed natural product molecules in benthic tropical cyanobacteria. We collected from several sites around the world and sequenced the genomes of 24 tropical filamentous marine cyanobacteria. The informatics program antiSMASH was used to annotate the major classes of gene clusters. BiG-SCAPE phylum-wide analysis revealed the most promising strains for natural product discovery among these cyanobacteria. LCMS/MS-based metabolomics highlighted the most abundant molecules and molecular classes among 10 of these marine cyanobacterial samples. We observed that despite many genes encoding for peptidic natural products, peptides were not as abundant as lipids and lipopeptides in the chemical extracts. Our results highlight a number of highly interesting biosynthetic gene clusters for genome mining among these cyanobacterial samples.
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- 2021
3. Heterologous expression of cryptomaldamide in a cyanobacterial host
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Nathan A. Moss, Ryan Simkovsky, William H. Gerwick, Raphael Reher, James W. Golden, Arnaud Taton, Andrew Ecker, Brooke A. Anderson, Tiago Leao, Lena Gerwick, Brienna Diaz, and Pieter C. Dorrestein
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0106 biological sciences ,Cyanobacteria ,Nostoc ,Biomedical Engineering ,macromolecular substances ,01 natural sciences ,Biochemistry, Genetics and Molecular Biology (miscellaneous) ,Article ,03 medical and health sciences ,Polyketide ,Nonribosomal peptide ,010608 biotechnology ,Gene cluster ,CRISPR ,Clustered Regularly Interspaced Short Palindromic Repeats ,Peptide Synthases ,Gene ,Chromatography, High Pressure Liquid ,030304 developmental biology ,chemistry.chemical_classification ,Gene Editing ,Genetics ,0303 health sciences ,Biological Products ,biology ,Anabaena ,General Medicine ,biology.organism_classification ,chemistry ,Multigene Family ,Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization ,bacteria ,Heterologous expression ,Oligopeptides ,Polyketide Synthases ,Plasmids - Abstract
Filamentous marine cyanobacteria make a variety of bioactive molecules that are produced by polyketide synthases, non-ribosomal peptide synthetases, and hybrid pathways that are encoded by large biosynthetic gene clusters. These cyanobacterial natural products represent potential drugs leads; however, thorough pharmacological investigations have been impeded by the limited quantity of compound that is typically available from the native organisms. Additionally, investigations of the biosynthetic gene clusters and enzymatic pathways have been difficult due to the inability to conduct genetic manipulations in the native producers. Here we report a set of genetic tools for the heterologous expression of biosynthetic gene clusters in the cyanobacteria Synechococcus elongatus PCC 7942 and Anabaena (Nostoc) PCC 7120. To facilitate the transfer of gene clusters in both strains, we engineered a strain of Anabaena that contains S. elongatus homologous sequences for chromosomal recombination at a neutral site and devised a CRISPR-based strategy to efficiently obtain segregated double recombinant clones of Anabaena. These genetic tools were used to express the large 28.7 kb cryptomaldamide biosynthetic gene cluster from the marine cyanobacterium Moorena (Moorea) producens JHB in both model strains. S. elongatus did not produce cryptomaldamide, however high-titer production of cryptomaldamide was obtained in Anabaena. The methods developed in this study will facilitate the heterologous expression of biosynthetic gene clusters isolated from marine cyanobacteria and complex metagenomic samples.Abstract Figure
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- 2020
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4. Biosynthesis of t-Butyl in Apratoxin A: Functional Analysis and Architecture of a PKS Loading Module
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Janet L. Smith, Andrew N. Lowell, Min Su, Meredith A. Skiba, William H. Gerwick, Lena Gerwick, Andrew P. Sikkema, David H. Sherman, Nathan A. Moss, and Rebecca M. Sturgis
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Carboxy-Lyases ,Decarboxylation ,Stereochemistry ,macromolecular substances ,Cyanobacteria ,010402 general chemistry ,Methylation ,01 natural sciences ,Biochemistry ,Article ,Substrate Specificity ,chemistry.chemical_compound ,Bacterial Proteins ,stomatognathic system ,Biosynthesis ,Catalytic Domain ,Depsipeptides ,Polyketide synthase ,Acyl Carrier Protein ,Transferase ,Amino Acid Sequence ,Peptide sequence ,biology ,010405 organic chemistry ,Methyltransferases ,General Medicine ,Multifunctional Enzymes ,0104 chemical sciences ,Acyl carrier protein ,Fatty acid synthase ,chemistry ,Acyltransferase ,biology.protein ,Molecular Medicine ,lipids (amino acids, peptides, and proteins) ,Polyketide Synthases - Abstract
The unusual feature of a t-butyl group is found in several marine-derived natural products including apratoxin A, a Sec61 inhibitor produced by the cyanobacterium Moorea bouillonii PNG 5-198. Here, we determine that the apratoxin A t-butyl group is formed as a pivaloyl acyl carrier protein (ACP) by AprA, the polyketide synthase (PKS) loading module of the apratoxin A biosynthetic pathway. AprA contains an inactive "pseudo" GCN5-related N-acetyltransferase domain (ΨGNAT) flanked by two methyltransferase domains (MT1 and MT2) that differ distinctly in sequence. Structural, biochemical, and precursor incorporation studies reveal that MT2 catalyzes unusually coupled decarboxylation and methylation reactions to transform dimethylmalonyl-ACP, the product of MT1, to pivaloyl-ACP. Further, pivaloyl-ACP synthesis is primed by the fatty acid synthase malonyl acyltransferase (FabD), which compensates for the ΨGNAT and provides the initial acyl-transfer step to form AprA malonyl-ACP. Additionally, images of AprA from negative stain electron microscopy reveal multiple conformations that may facilitate the individual catalytic steps of the multienzyme module.
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- 2018
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5. A Maldiisotopic Approach to Discover Natural Products: Cryptomaldamide, a Hybrid Tripeptide from the Marine Cyanobacterium Moorea producens
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Robin B. Kinnel, Tiago Leao, Eduardo Esquenazi, Emily A. Monroe, Pieter C. Dorrestein, William H. Gerwick, Thomas F. Murray, David H. Sherman, Lena Gerwick, Alban R. Pereira, Anton Korobeynikov, Nathan A. Moss, and Emily Mevers
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0301 basic medicine ,Magnetic Resonance Spectroscopy ,Pharmaceutical Science ,Computational biology ,Secondary metabolite ,Biology ,Cyanobacteria ,01 natural sciences ,Article ,DNA sequencing ,Analytical Chemistry ,03 medical and health sciences ,chemistry.chemical_compound ,Biosynthesis ,Drug Discovery ,Botany ,Gene cluster ,medicine ,Moorea producens ,Pharmacology ,Whole genome sequencing ,Biological Products ,Natural product ,Molecular Structure ,010405 organic chemistry ,Organic Chemistry ,Computational Biology ,biology.organism_classification ,0104 chemical sciences ,030104 developmental biology ,Complementary and alternative medicine ,chemistry ,Biosynthetic process ,Molecular Medicine ,Oligopeptides ,medicine.drug - Abstract
Genome sequencing of microorganisms has revealed a greatly increased capacity for natural products biosynthesis than was previously recognized from compound isolation efforts alone. Hence, new methods are needed for the discovery and description of this hidden secondary metabolite potential. Here we show that provision of heavy nitrogen 15N-nitrate to marine cyanobacterial cultures followed by single filament MALDI analysis over a period of days was highly effective in identifying a new natural product with an exceptionally high nitrogen content. The compound, named cryptomaldamide, was subsequently isolated using MS to guide the purification process, and its structure determined by 2D NMR and other spectroscopic and chromatographic methods. Bioinformatic analysis of the draft genome sequence identified a 28.7 kB gene cluster which putatively encodes for cryptomaldamide biosynthesis. Notably, an amidinotransferase is proposed to initiate the biosynthetic process by transferring an amidino group from arginine to serine to produce the first residue to be incorporated by the hybrid NRPS-PKS pathway. The maldiisotopic approach presented here is thus demonstrated to provide an orthogonal method by which to discover novel chemical diversity from Nature.
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- 2017
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6. Nature's Combinatorial Biosynthesis Produces Vatiamides A-F
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Chambers C. Hughes, Nathan A. Moss, Lena Gerwick, William H. Gerwick, Grant S. Seiler, Tiago Leao, and Gabriel Castro-Falcón
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Stereochemistry ,010402 general chemistry ,Cyanobacteria ,01 natural sciences ,Catalysis ,Article ,chemistry.chemical_compound ,Polyketide ,Lipopeptides ,Biosynthesis ,Gene cluster ,polycyclic compounds ,Amino Acid Sequence ,Peptide Synthases ,Gene ,Moorea producens ,chemistry.chemical_classification ,biology ,010405 organic chemistry ,Chemistry ,General Chemistry ,biology.organism_classification ,0104 chemical sciences ,Amino acid ,Docking (molecular) ,Multigene Family ,Click Chemistry ,Azide ,Sequence Alignment - Abstract
Hybrid type I PKS/NRPS biosynthetic pathways typically proceed in a collinear manner wherein one molecular building block is enzymatically incorporated in a sequence that corresponds to gene arrangement. In this work, genome mining combined with the use of a fluorogenic azide-based click probe led to the discovery and characterization of vatiamides A-F, three structurally diverse alkynylated lipopeptides, and their brominated analogues, from the cyanobacterium Moorea producens ASI16Jul14-2. These derive from a unique combinatorial non-collinear PKS/NRPS system encoded by a 90 kb gene cluster in which an upstream PKS cassette interacts with three separate cognate NRPS partners. This is facilitated by a series of promiscuous intermodule PKS-NRPS docking motifs possessing identical amino acid sequences. This interaction confers a new type of combinatorial capacity for creating molecular diversity in microbial systems.
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- 2019
7. Engineering a functional 1-deoxy-D-xylulose 5-phosphate (DXP) pathway in Saccharomyces cerevisiae
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Eugene Antipov, Lishan Zhao, Peter Jackson, Pinghua Liu, Sheela Muley, Jack D. Newman, Kevin L. Dietzel, Jeremy LaBarge, James Kirby, Gale Wichmann, Jay D. Keasling, Shayin S. Gottlieb, Sara P. Gaucher, Nathan A. Moss, Rossana Chan, Edward E. K. Baidoo, Kristy Michelle Hawkins, and Tina Mahatdejkul
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0301 basic medicine ,Saccharomyces cerevisiae ,Bioengineering ,yeast ,Applied Microbiology and Biotechnology ,Article ,Industrial Biotechnology ,Metabolic engineering ,03 medical and health sciences ,Synthetic biology ,chemistry.chemical_compound ,Glyceraldehyde ,terpene ,Pentosephosphates ,030102 biochemistry & molecular biology ,biology ,Terpenes ,organic chemicals ,biology.organism_classification ,Terpenoid ,Yeast ,Cytosol ,030104 developmental biology ,Metabolic Engineering ,Biochemistry ,chemistry ,Mevalonate pathway ,MEP pathway ,Biotechnology - Abstract
© 2016 International Metabolic Engineering Society Isoprenoids are used in many commercial applications and much work has gone into engineering microbial hosts for their production. Isoprenoids are produced either from acetyl-CoA via the mevalonate pathway or from pyruvate and glyceraldehyde 3-phosphate via the 1-deoxy-D-xylulose 5-phosphate (DXP) pathway. Saccharomyces cerevisiae exclusively utilizes the mevalonate pathway to synthesize native isoprenoids and in fact the alternative DXP pathway has never been found or successfully reconstructed in the eukaryotic cytosol. There are, however, several advantages to isoprenoid synthesis via the DXP pathway, such as a higher theoretical yield, and it has long been a goal to transplant the pathway into yeast. In this work, we investigate and address barriers to DXP pathway functionality in S. cerevisiae using a combination of synthetic biology, biochemistry and metabolomics. We report, for the first time, functional expression of the DXP pathway in S. cerevisiae. Under low aeration conditions, an engineered strain relying solely on the DXP pathway for isoprenoid biosynthesis achieved an endpoint biomass 80% of that of the same strain using the mevalonate pathway.
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- 2016
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8. Kalkipyrone B, a marine cyanobacterial γ-pyrone possessing cytotoxic and anti-fungal activities
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Gregory M. Goldgof, Ozlem Demirkiran, William H. Gerwick, Edgar Vigil, John Lee, Nathan A. Moss, Gabriel Navarro, Elizabeth A. Winzeler, Matthew J. Bertin, and Frederick A. Valeriote
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0301 basic medicine ,Cyanobacteria ,Panama ,Stereochemistry ,Saccharomyces cerevisiae ,Antineoplastic Agents ,Marine Biology ,Plant Science ,Horticulture ,01 natural sciences ,Biochemistry ,Article ,03 medical and health sciences ,chemistry.chemical_compound ,Humans ,Cytotoxicity ,Molecular Biology ,EC50 ,Molecular Structure ,biology ,Strain (chemistry) ,010405 organic chemistry ,Diastereomer ,Absolute configuration ,General Medicine ,biology.organism_classification ,Pyrone ,0104 chemical sciences ,030104 developmental biology ,chemistry ,Pyrones ,Female ,Drug Screening Assays, Antitumor - Abstract
Bioassay-guided fractionation of two marine cyanobacterial extracts using the H-460 human lung cancer cell line and the OVC-5 human ovarian cancer cell line led to the isolation of three related α-methoxy-β, β’-dimethyl-γ-pyrones each containing a modified alkyl chain, one of which was identified as the previously reported kalkipyrone and designated kalkipyrone A. The second compound was an analog designated kalkipyrone B. The third was identified as the recently reported yoshipyrone A, also isolated from a marine cyanobacterium. Kalkipyrone A and B were obtained from a field-collection of the cyanobacterium Leptolyngbya sp. from Fagasa Bay, American Samoa, while yoshipyrone A was isolated from a field-collection of cyanobacteria (cf. Schizothrix sp.) from Panama. One-dimensional and two-dimensional NMR experiments were used to determine the overall structures and relative configurations of the kalkipyrones, and the absolute configuration of kalkipyrone B was determined by 1H NMR analysis of diastereomeric Mosher’s esters. Kalkipyrone A showed good cytotoxicity to H-460 human lung cancer cells (EC50 = 0.9 µM), w M), while kalkipyrone B and yoshipyrone A were less active (EC50 = 9.0 µM and > 10 µM, respectively). Both kalkipyrone A and B showed moderate toxicity to Saccharomyces cerevisiae ABC16-Monster strain (IC50 = 14.6 and 13.4 µM, respectively), whereas yoshipyrone A was of low toxicity to this yeast strain (IC50 = 63.8 µM).
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- 2016
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9. Collection, Culturing, and Genome Analyses of Tropical Marine Filamentous Benthic Cyanobacteria
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Nathan A, Moss, Tiago, Leao, Evgenia, Glukhov, Lena, Gerwick, and William H, Gerwick
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Cryopreservation ,DNA, Bacterial ,Bacteriological Techniques ,Biological Products ,Molecular Structure ,Diving ,Marine Biology ,Cyanobacteria ,Recombinant Proteins ,Culture Media ,Workflow ,Isotope Labeling ,Multigene Family ,Water Microbiology ,Ecosystem ,Genome, Bacterial - Abstract
Decreasing sequencing costs has sparked widespread investigation of the use of microbial genomics to accelerate the discovery and development of natural products for therapeutic uses. Tropical marine filamentous cyanobacteria have historically produced many structurally novel natural products, and therefore present an excellent opportunity for the systematic discovery of new metabolites via the information derived from genomics and molecular genetics. Adequate knowledge transfer and institutional know-how are important to maintain the capability for studying filamentous cyanobacteria due to their unusual microbial morphology and characteristics. Here, we describe workflows, procedures, and commentary on sample collection, cultivation, genomic DNA generation, bioinformatics tools, and biosynthetic pathway analysis concerning filamentous cyanobacteria.
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- 2018
10. MetaRiPPquest: A Peptidogenomics Approach for the Discovery of Ribosomally Synthesized and Post-translationally Modified Peptides
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Alexey Gurevich, Lena Gerwick, Fernando Vargas, Anton Korobeynikov, Tal Luzzatto-Knaan, Jon G. Sanders, Pieter C. Dorrestein, Evgenia Glukhov, Iddo Friedberg, Alla Mikheenko, Nathan A. Moss, C. B. Naman, Alexander Shlemov, Nitin Kumar Singh, Pavel A. Pevzner, William H. Gerwick, Rob Knight, Tiago Leao, Kelsey L. Alexander, Md-Nafiz Hamid, Luke R. Thompson, Hosein Mohimani, Benitez Ras, Louis-Félix Nothias, Jamie Morton, and Kasturi Venkateswaran
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0303 health sciences ,Natural product ,Computer science ,medicine.drug_class ,Antibiotics ,Computational biology ,010402 general chemistry ,01 natural sciences ,Genome ,Tandem mass spectrum ,0104 chemical sciences ,03 medical and health sciences ,chemistry.chemical_compound ,chemistry ,Metagenomics ,Molecular networking ,medicine ,030304 developmental biology - Abstract
Ribosomally synthesized and post-translationally modified peptides (RiPPs) are an important class of natural products that include many antibiotics and a variety of other bioactive compounds. While recent breakthroughs in RiPP discovery raised the challenge of developing new algorithms for their analysis, peptidogenomic-based identification of RiPPs by combining genome/metagenome mining with analysis of tandem mass spectra remains an open problem. We present here MetaRiPPquest, a software tool for addressing this challenge that is compatible with large-scale screening platforms for natural product discovery. After searching millions of spectra in the Global Natural Products Social (GNPS) molecular networking infrastructure against just six genomic and metagenomic datasets, MetaRiPPquest identified 27 known and discovered 5 novel RiPP natural products.
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- 2017
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11. Minimum Information about a Biosynthetic Gene cluster
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Patrick Caffrey, Renzo Kottmann, Eriko Takano, Sean Doyle, Axel A. Brakhage, Matthew Cummings, Juan Pablo Gomez-Escribano, Yvonne Mast, Ryan F. Seipke, Rob Lavigne, Markus Nett, Hans-Wilhelm Nützmann, Jan Claesen, David H. Sherman, Daniel Petras, Pablo Cruz-Morales, Carl J. Balibar, Anne Osbourn, Oscar P. Kuipers, Leonilde M. Moreira, Xinyu Liu, Marcia S. Osburne, Bohdan Ostash, David P. Fewer, Changsheng Zhang, Pelin Yilmaz, Mohamed S. Donia, Anja Greule, Hyun Uk Kim, Nicholas J. Tobias, Frank Oliver Glöckner, Christoph Geiger, Chia Y. Lee, William H. Gerwick, Philipp Wiemann, Bertolt Gust, Susan E. Jensen, Wilfred A. van der Donk, Jan Kormanec, Ben Shen, Christopher M. Thomas, Jason Micklefield, Srikanth Duddela, R. Cameron Coates, René De Mot, Anthony S. Haines, Neha Garg, Guohui Pan, Roderich D. Süssmuth, Hyung Jin Kwon, Jonathan D. Walton, Lena Gerwick, Jörn Piel, Monika Ehling-Schulz, Zhenhua Tian, Jonathan L. Klassen, Xiaohui Yan, Emily A. Monroe, Yunchang Xie, Russell J. Cox, Keishi Ishida, Grace Yim, Stefano Donadio, Nadine Ziemert, Yuta Tsunematsu, Matthew L. Hillwig, Miroslav Petricek, Sylvie Lautru, Tilmann Weber, Andrew W. Truman, Rainer Breitling, Peter Kötter, Nikos C. Kyrpides, Stephanie Düsterhus, Christian Hertweck, Hideaki Oikawa, Sean F. Brady, Christopher T. Walsh, Adam C. Jones, Marcus A. Moore, Bradley S. Moore, Barrie Wilkinson, Simone M. Mantovani, Nathan A. Moss, Elizabeth E. Wyckoff, Emily P. Balskus, Kapil Tahlan, Fengan Yu, Monica Höfte, Jos M. Raaijmakers, Taifo Mahmud, Yit-Heng Chooi, Yi Tang, Andreas Bechthold, Douglas A. Mitchell, Joanne M. Willey, Helge B. Bode, John B. Biggins, Margherita Sosio, Yi-Qiang Cheng, Carmen Méndez, Leonard Kaysser, Joleen Masschelein, Daniel Krug, Federico Rosconi, Marnix H. Medema, Kaarina Sivonen, Tomohisa Kuzuyama, Mikko Metsä-Ketelä, Esther K. Schmitt, Carsten Kegler, Andriy Luzhetskyy, Gilles P. van Wezel, Bai Linquan, Kai Blin, Jens Nielsen, Bertrand Aigle, Amrita Pati, Harald Gross, Muriel Viaud, Pieter C. Dorrestein, Carla S. Jones, Michael A. Fischbach, Shelley M. Payne, Zhe Rui, Gerard D. Wright, Wen Liu, Alexey V. Melnik, Barry Scott, Brett A. Neilan, Nancy P. Keller, Rainer Borriss, Katrin Jungmann, Michalis Hadjithomas, Evi Stegmann, Daniel J. Edwards, F. Jerry Reen, Alexander Kristian Apel, Wolfgang Wohlleben, Michael J. Smanski, Leonard Katz, Fergal O'Gara, Eric J. N. Helfrich, Sergey B. Zotchev, Olivier Ploux, Arnold J. M. Driessen, Rolf Müller, Jean-Luc Pernodet, K. D. Entian, José A. Salas, Irene de Bruijn, Francisco Barona-Gómez, Jianhua Ju, Jon Clardy, Molecular Microbiology, Molecular Genetics, Jacobs University [Bremen], Microbial genomics and bioinformatics research group, Max Planck Institute for Marine Microbiology, Max-Planck-Gesellschaft-Max-Planck-Gesellschaft, Max-Planck-Gesellschaft, Atmospheric Chemistry Observations and Modeling Laboratory (ACOML), National Center for Atmospheric Research [Boulder] (NCAR), Department of Food and Environmental Sciences, Helsingin yliopisto = Helsingfors universitet = University of Helsinki, Collaborative Mass Spectrometry Innovation Center, University of California [San Diego] (UC San Diego), University of California (UC)-University of California (UC), Heilongjiang Institute of Science and Technology, Eidgenössische Technische Hochschule - Swiss Federal Institute of Technology [Zürich] (ETH Zürich), Merck Stiftungsprofessur fûr Molekulare Biotechnologie Fachbereich Biowissenscharten, Goethe-University Frankfurt am Main, Department of Opto-Mechatronics Engineering and Cogno-Mechatronics Engineering, Pusan National University, University of Liverpool, College of Computer Science and Technology [Zhejiang] (Zhejiang University), University of Florida [Gainesville] (UF), School of Management, University of Science and Technology of China [Hefei] (USTC), State Key Laboratory of Nuclear Physics and Technology (SKL-NPT), Peking University [Beijing], Massachusetts Institute of Technology (MIT), Memorial Sloane Kettering Cancer Center [New York], South China Sea Institute of Oceanology, Chinese Academy of Sciences [Beijing] (CAS), Dynamique des Génomes et Adaptation Microbienne (DynAMic), Institut National de la Recherche Agronomique (INRA)-Université de Lorraine (UL), Institut für Biologie [Berlin] (IFB), Humboldt University Of Berlin, School of Biomolecular and Biomedical Science and Centre for Synthesis and Chemical Biology, University College Dublin [Dublin] (UCD), Parallélisme, Réseaux, Systèmes, Modélisation (PRISM), Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Centre National de la Recherche Scientifique (CNRS), Skaggs School of Pharmacy and Pharmaceutical Sciences [San Diego], Grenoble Institut des Neurosciences (GIN), Université Joseph Fourier - Grenoble 1 (UJF)-Institut National de la Santé et de la Recherche Médicale (INSERM), Pixyl Medical [Grenoble], Integrated Optical MicroSystems (IOMS), University of Twente-MESA+ Institute for Nanotechnology, 7Lehrstuhl für Mikrobielle Ökologie, Department für Grundlagen der Biowissenschaften, Technische Universität Munchen - Université Technique de Munich [Munich, Allemagne] (TUM), Service Néphrologie Pédiatrique, CHU Strasbourg-Hôpital de Hautepierre [Strasbourg], Advanced Resources and Risk Technology, Laboratory of Phytopathology (K.C., H.S., B.A., M.H.), Universiteit Gent = Ghent University (UGENT), Trifork Aarhus C, Aalborg University [Denmark] (AAU), Centers for Disease Control and Prevention [Atlanta] (CDC), Centers for Disease Control and Prevention, Groupe d'Etude de la Matière Condensée (GEMAC), Groningen Biomolecular Sciences and Biotechnology Institute (GBB), University of Groningen [Groningen], DOE Joint Genome Institute [Walnut Creek], Microbiologie Moléculaire des Actinomycètes (ACTINO), Département Microbiologie (Dpt Microbio), Institut de Biologie Intégrative de la Cellule (I2BC), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Institut de Biologie Intégrative de la Cellule (I2BC), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Institut de génétique et microbiologie [Orsay] (IGM), Université Paris-Sud - Paris 11 (UP11)-Centre National de la Recherche Scientifique (CNRS), Laboratory of Gene Technology, Catholic University of Leuven - Katholieke Universiteit Leuven (KU Leuven), Joint Center for Structural Genomics (JCSG), Stanford University, Centre européen de recherche et d'enseignement des géosciences de l'environnement (CEREGE), Institut de Recherche pour le Développement (IRD)-Institut National de la Recherche Agronomique (INRA)-Aix Marseille Université (AMU)-Collège de France (CdF (institution))-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS), Centre de Recherches et d'Applications Pédagogiques en Langues (CRAPEL), Université Nancy 2, Space Sciences Laboratory [Berkeley] (SSL), University of California [Berkeley] (UC Berkeley), Polytechnic Institute of Leiria, NMR Laboratory, Université de Mons, Université de Mons (UMons), School of Biomedical Science, Curtin University [Perth], Planning and Transport Research Centre (PATREC)-Planning and Transport Research Centre (PATREC), BIOMERIT Research Centre, School of Microbiology, University College Cork (UCC), Department of Engineering Science, University of Oxford, Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Laboratoire Charles Friedel, Ecole Nationale Supérieure de Chimie de Paris - Chimie ParisTech-PSL (ENSCP), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Laboratory of Phytopathology, Wageningen University and Research [Wageningen] (WUR), Department of Microbial Ecology, Netherlands Institute of Ecology, Department of Animal Production, Universidad de Córdoba = University of Córdoba [Córdoba], IMV Technologies, Gulliver (UMR 7083), Ecole Superieure de Physique et de Chimie Industrielles de la Ville de Paris (ESPCI Paris), Institut für Chemie, Technical University of Berlin / Technische Universität Berlin (TU), Lipides - Nutrition - Cancer (U866) (LNC), Université de Bourgogne (UB)-Institut National de la Santé et de la Recherche Médicale (INSERM)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement-Ecole Nationale Supérieure de Biologie Appliquée à la Nutrition et à l'Alimentation de Dijon (ENSBANA), Centre de Recherche Paul Pascal (CRPP), Université de Bordeaux (UB)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), DEPARTMENT OF CHEMISTRY, Durham University, Molekulare Ökologie, Joint Attosecond Science Laboratory, University of Ottawa and National Research Council, Department of Mechanical and Aerospace Engineering [Univ California Davis] (MAE - UC Davis), University of California [Davis] (UC Davis), University of Helsinki, University of California-University of California, Université de Lorraine (UL)-Institut National de la Recherche Agronomique (INRA), Humboldt-Universität zu Berlin, University of Twente [Netherlands]-MESA+ Institute for Nanotechnology, Technische Universität München [München] (TUM), Universiteit Gent = Ghent University [Belgium] (UGENT), Department of Biosystems, KU Leuven, Aix Marseille Université (AMU)-Institut national des sciences de l'Univers (INSU - CNRS)-Collège de France (CdF (institution))-Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Recherche Agronomique (INRA), University of California [Berkeley], NMR and Molecular Imaging Laboratory [Mons], University of Mons [Belgium] (UMONS), University of Oxford [Oxford], Centre National de la Recherche Scientifique (CNRS)-Ecole Nationale Supérieure de Chimie de Paris - Chimie ParisTech-PSL (ENSCP), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut de Chimie du CNRS (INC), Universidad de Córdoba [Cordoba], Technische Universität Berlin (TU), Institut National de la Santé et de la Recherche Médicale (INSERM)-Université de Bourgogne (UB)-Ecole Nationale Supérieure de Biologie Appliquée à la Nutrition et à l'Alimentation de Dijon (ENSBANA)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement, Department of Mechanical and Aerospace Engineering [Davis], Eidgenössische Technische Hochschule - Swiss Federal Institute of Technology in Zürich [Zürich] (ETH Zürich), University of Florida [Gainesville], Institut für Biologie, Humboldt Universität zu Berlin, Institut National de la Santé et de la Recherche Médicale (INSERM)-CHU Grenoble-Université Joseph Fourier - Grenoble 1 (UJF), Ghent University [Belgium] (UGENT), Université Paris-Sud - Paris 11 (UP11)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Centre National de la Recherche Scientifique (CNRS)-Université Paris-Saclay-Université Paris-Sud - Paris 11 (UP11)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Centre National de la Recherche Scientifique (CNRS)-Université Paris-Saclay-Institut de Biologie Intégrative de la Cellule (I2BC), Université Paris-Sud - Paris 11 (UP11)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Centre National de la Recherche Scientifique (CNRS)-Université Paris-Saclay-Université Paris-Sud - Paris 11 (UP11)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Centre National de la Recherche Scientifique (CNRS)-Université Paris-Saclay, Stanford University [Stanford], Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Collège de France (CdF)-Institut national des sciences de l'Univers (INSU - CNRS)-Aix Marseille Université (AMU)-Institut National de la Recherche Agronomique (INRA), NMR and Molecular Imaging Laboratory, Université Paris-Sud - Paris 11 (UP11)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Centre National de la Recherche Scientifique (CNRS)-Université Paris-Saclay, Ecole Nationale Supérieure de Chimie de Paris- Chimie ParisTech-PSL (ENSCP)-Centre National de la Recherche Scientifique (CNRS), Wageningen University and Research Centre [Wageningen] (WUR), Gulliver, ESPCI ParisTech-Centre National de la Recherche Scientifique (CNRS), Technische Universität Berlin (TUB), Université de Bordeaux (UB)-Centre National de la Recherche Scientifique (CNRS), Max Planck Society (GERMANY), Max Planck Society (GERMANY)-Max Planck Society (GERMANY), Laboratoire Leprince-Ringuet ( LLR ), Institut National de Physique Nucléaire et de Physique des Particules du CNRS ( IN2P3 ) -École polytechnique ( X ) -Centre National de la Recherche Scientifique ( CNRS ), Atmospheric Chemistry Observations and Modeling Laboratory ( ACOML ), National Center for Atmospheric Research [Boulder] ( NCAR ), University of California [San Diego] ( UC San Diego ), Eidgenössische Technische Hochschule [Zürich] ( ETH Zürich ), University of Science and Technology of China [Hefei] ( USTC ), State Key Laboratory of Nuclear Physics and Technology ( SKL-NPT ), Massachusetts Institute of Technology ( MIT ), Memorial Sloan Kettering Cancer Center ( MSKCC ), Shanghai Ocean University, Dynamique des Génomes et Adaptation Microbienne ( DynAMic ), Institut National de la Recherche Agronomique ( INRA ) -Université de Lorraine ( UL ), University College Dublin [Dublin] ( UCD ), Parallélisme, Réseaux, Systèmes, Modélisation ( PRISM ), Université de Versailles Saint-Quentin-en-Yvelines ( UVSQ ) -Centre National de la Recherche Scientifique ( CNRS ), Grenoble Institut des Neurosciences ( GIN ), Institut National de la Santé et de la Recherche Médicale ( INSERM ) -CHU Grenoble-Université Joseph Fourier - Grenoble 1 ( UJF ), Integrated Optical MicroSystems ( IOMS ), Technische Universität München [München] ( TUM ), Ghent University [Belgium] ( UGENT ), Aalborg University [Denmark] ( AAU ), Centers for Disease Control and Prevention [Atlanta] ( CDC ), Groupe d'Etude de la Matière Condensée ( GEMAC ), Groningen Biomolecular Sciences and Biotechnology Institute ( GBB ), Microbiologie Moléculaire des Actinomycètes ( ACTINO ), Département Microbiologie ( Dpt Microbio ), Institut de Biologie Intégrative de la Cellule ( I2BC ), Université Paris-Sud - Paris 11 ( UP11 ) -Commissariat à l'énergie atomique et aux énergies alternatives ( CEA ) -Université Paris-Saclay-Centre National de la Recherche Scientifique ( CNRS ) -Université Paris-Sud - Paris 11 ( UP11 ) -Commissariat à l'énergie atomique et aux énergies alternatives ( CEA ) -Université Paris-Saclay-Centre National de la Recherche Scientifique ( CNRS ) -Institut de Biologie Intégrative de la Cellule ( I2BC ), Université Paris-Sud - Paris 11 ( UP11 ) -Commissariat à l'énergie atomique et aux énergies alternatives ( CEA ) -Université Paris-Saclay-Centre National de la Recherche Scientifique ( CNRS ) -Université Paris-Sud - Paris 11 ( UP11 ) -Commissariat à l'énergie atomique et aux énergies alternatives ( CEA ) -Université Paris-Saclay-Centre National de la Recherche Scientifique ( CNRS ), Institut de génétique et microbiologie [Orsay] ( IGM ), Université Paris-Sud - Paris 11 ( UP11 ) -Centre National de la Recherche Scientifique ( CNRS ), Joint Center for Structural Genomics ( JCSG ), Centre européen de recherche et d'enseignement de géosciences de l'environnement ( CEREGE ), Centre National de la Recherche Scientifique ( CNRS ) -Institut de Recherche pour le Développement ( IRD ) -Aix Marseille Université ( AMU ) -Collège de France ( CdF ) -Institut National de la Recherche Agronomique ( INRA ) -Institut national des sciences de l'Univers ( INSU - CNRS ), Centre de Recherches et d'Applications Pédagogiques en Langues ( CRAPEL ), Space Sciences Laboratory [Berkeley] ( SSL ), Université de Mons ( UMons ), Planning and Transport Research Centre ( PATREC ) -Planning and Transport Research Centre ( PATREC ), University College Cork ( UCC ), Université Paris-Sud - Paris 11 ( UP11 ) -Commissariat à l'énergie atomique et aux énergies alternatives ( CEA ) -Université Paris-Saclay-Centre National de la Recherche Scientifique ( CNRS ), Ecole Nationale Supérieure de Chimie de Paris- Chimie ParisTech-PSL ( ENSCP ) -Centre National de la Recherche Scientifique ( CNRS ), Wageningen University and Research Centre [Wageningen] ( WUR ), ESPCI ParisTech, Technische Universität Berlin ( TUB ), Lipides - Nutrition - Cancer (U866) ( LNC ), Université de Bourgogne ( UB ) -Institut National de la Santé et de la Recherche Médicale ( INSERM ) -AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement-Ecole Nationale Supérieure de Biologie Appliquée à la Nutrition et à l'Alimentation de Dijon ( ENSBANA ), Centre de recherche Paul Pascal, CNRS, Université de Bordeaux ( UPR8641 ), Centre de Recherche Paul Pascal, CNRS, Université de Bordeaux, University Durham, University of California [Davis] ( UC Davis ), Université Paris-Sud - Paris 11 (UP11)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Université Paris-Sud - Paris 11 (UP11)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Institut de Biologie Intégrative de la Cellule (I2BC), Université Paris-Sud - Paris 11 (UP11)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Université Paris-Sud - Paris 11 (UP11)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Université Paris-Sud - Paris 11 (UP11)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), [GIN] Grenoble Institut des Neurosciences (GIN), Helmholtz Institute for Pharmaceutical Research Saarland (HIPS), and Saarland University, Building A4.1, 66123 Saarbruecken, Germany.
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MESH : Protein Biosynthesis ,protein synthesis ,Operon ,MESH : Polysaccharides ,International Cooperation ,MESH: Plants ,plant ,Review ,MESH: Terpenes ,gene cluster ,polyketide ,data base ,genetic database ,Gene cluster ,acyltransferase ,Databases, Genetic ,MESH : Metagenome ,MESH : Genetic Markers ,genetics ,terpene ,GeneralLiterature_REFERENCE(e.g.,dictionaries,encyclopedias,glossaries) ,ComputingMilieux_MISCELLANEOUS ,MESH : Peptides ,MESH: Peptides ,biology ,fungus ,nonribosomal peptide synthesis ,Plants ,bacterium ,peptide ,priority journal ,MESH: Protein Biosynthesis ,Multigene Family ,MESH : Terpenes ,MESH: Computational Biology ,Genetic Markers ,MESH: Terminology as Topic ,Bioinformatics ,MESH : Multigene Family ,biological activity ,Article ,metagenome ,Alkaloids ,Manchester Institute of Biotechnology ,Terminology as Topic ,Bioinformatica ,MESH : Bacteria ,Peptide Biosynthesis ,MESH : Databases, Genetic ,Molecular Biology ,MESH : Fungi ,MESH: Polyketides ,standardization ,secondary metabolism ,[ SDV ] Life Sciences [q-bio] ,Bacteria ,ta1182 ,Computational Biology ,MESH : Terminology as Topic ,operon ,Laboratorium voor Phytopathologie ,MESH: International Cooperation ,gene function ,Metagenomics ,polysaccharide ,Laboratory of Phytopathology ,chemical structure ,Metagenome ,MESH: Multigene Family ,EPS ,biosynthesis ,Peptides ,MESH : Computational Biology ,MESH : International Cooperation ,[SDV]Life Sciences [q-bio] ,MESH: Genetic Markers ,information ,MESH : Alkaloids ,Synthetic biology ,MESH: Peptide Biosynthesis, Nucleic Acid-Independent ,database ,MESH: Databases, Genetic ,Genetics ,MESH : Polyketides ,MESH : Peptide Biosynthesis, Nucleic Acid-Independent ,ddc:540 ,standards ,Peptide Biosynthesis, Nucleic Acid-Independent ,ComputingMethodologies_DOCUMENTANDTEXTPROCESSING ,nomenclature ,genetic marker ,alkaloid derivative ,MESH: Fungi ,Biology ,MESH : Plants ,peptide derivative ,Polyketide ,MESH: Alkaloids ,Polysaccharides ,ddc:570 ,Life Science ,14. Life underwater ,Secondary metabolism ,enzyme specificity ,Gene ,nonhuman ,Terpenes ,Fungi ,nucleotide sequence ,Cell Biology ,MESH: Metagenome ,ResearchInstitutes_Networks_Beacons/manchester_institute_of_biotechnology ,alkaloid ,MESH: Bacteria ,MESH: Polysaccharides ,13. Climate action ,Polyketides ,Protein Biosynthesis ,synthetic biology ,metabolism - Abstract
M.H.M. was supported by a Rubicon fellowship of the Netherlands Organization for Scientific Research (NWO;Rubicon 825.13.001). The work of R.K. was supported by the European Union’s Seventh Framework Programme(Joint Call OCEAN.2011–2: Marine microbial diversity—new insights into marine ecosystems functioning and its biotechnological potential) under the grant agreement no.287589 (Micro B3). M.C. was supported by a Biotechnology and Biological Sciences Research Council (BBSRC)studentship (BB/J014478/1). The GSC is supported by funding from the Natural Environment Research Council(UK), the National Institute for Energy Ethics and Society(NIEeS; UK), the Gordon and Betty Moore Foundation,the National Science Foundation (NSF; US) and the US Department of Energy. The Manchester Synthetic Biology Research Centre, SYNBIOCHEM, is supported by BBSRC/Engineering and Physical Sciences Research Council(EPSRC) grant BB/M017702/1, Medema, M.H., Kottmann, R., Yilmaz, P., Cummings, M., Biggins, J.B., Blin, K., De Bruijn, I., Chooi, Y.H., Claesen, J., Coates, R.C., Cruz-Morales, P., Duddela, S., Düsterhus, S., Edwards, D.J., Fewer, D.P., Garg, N., Geiger, C., Gomez-Escribano, J.P., Greule, A., Hadjithomas, M., Haines, A.S., Helfrich, E.J.N., Hillwig, M.L., Ishida, K., Jones, A.C., Jones, C.S., Jungmann, K., Kegler, C., Kim, H.U., Kötter, P., Krug, D., Masschelein, J., Melnik, A.V., Mantovani, S.M., Monroe, E.A., Moore, M., Moss, N., Nützmann, H.-W., Pan, G., Pati, A., Petras, D., Reen, F.J., Rosconi, F., Rui, Z., Tian, Z., Tobias, N.J., Tsunematsu, Y., Wiemann, P., Wyckoff, E., Yan, X., Yim, G., Yu, F., Xie, Y., Aigle, B., Apel, A.K., Balibar, C.J., Balskus, E.P., Barona-Gómez, F., Bechthold, A., Bode, H.B., Borriss, R., Brady, S.F., Brakhage, A.A., Caffrey, P., Cheng, Y.Q., Clardy, J., Cox, R.J., De Mot, R., Donadio, S., Donia, M.S., Van Der Donk, W.A., Dorrestein, P.C., Doyle, S., Driessen, A.J.M., Ehling-Schulz, M., Entian, K.-D., Fischbach, M.A., Gerwick, L., Gerwick, W.H., Gross, H., Gust, B., Hertweck, C., Höfte, M., Jensen, S.E., Ju, J., Katz, L., Kaysser, L., Klassen, J.L., Keller, N.P., Kormanec, J., Kuipers, O.P., Kuzuyama, T., Kyrpides, N.C., Kwon, H.-J., Lautru, S., Lavigne, R., Lee, C.Y., Linquan, B., Liu, X., Liu, W., Luzhetskyy, A., Mahmud, T., Mast, Y., Méndez, C., Metsä-Ketelä, M., Micklefield, J., Mitchell, D.A., Moore, B.S., Moreira, L.M., Müller, R., Neilan, B.A., Nett, M., Nielsen, J., O'Gara, F., Oikawa, H., Osbourn, A., Osburne, M.S., Ostash, B., Payne, S.M., Pernodet, J.-L., Petricek, M., Piel, J., Ploux, O., Raaijmakers, J.M., Salas, J.A., Schmitt, E.K., Scott, B., Seipke, R.F., Shen, B., Sherman, D.H., Sivonen, K., Smanski, M.J., Sosio, M., Stegmann, E., Süssmuth, R.D., Tahlan, K., Thomas, C.M., Tang, Y., Truman, A.W., Viaud, M., Walton, J.D., Walsh, C.T., Weber, T., Van Wezel, G.P., Wilkinson, B., Willey, J.M., Wohlleben, W., Wright, G.D., Ziemert, N., Zhang, C., Zotchev, S.B., Breitling, R., Takano, E., Glöckner, F.O.
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- 2015
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12. Integrating molecular networking and biological assays to target the isolation of a cytotoxic cyclic octapeptide, Samoamide A, from an american samoan Marine Cyanobacterium
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Frederick A. Valeriote, Svetlana E. Nikoulina, Lorene Armstrong, C. Benjamin Naman, William H. Gerwick, Bailey W. Miller, Pieter C. Dorrestein, Paul D. Boudreau, Hosana Maria Debonsi, John Lee, Nathan A. Moss, and Ramandeep Rattan
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Models, Molecular ,0301 basic medicine ,Lung Neoplasms ,Molecular model ,Pharmaceutical Science ,Bioinformatics ,Drug Screening Assays ,01 natural sciences ,Medical and Health Sciences ,Analytical Chemistry ,Models ,Carcinoma, Non-Small-Cell Lung ,Drug Discovery ,Cytotoxic T cell ,Non-Small-Cell Lung ,Lung ,Cancer ,chemistry.chemical_classification ,Cyclic ,Molecular Structure ,ERICALES ,Biological Sciences ,American Samoa ,Biochemistry ,Molecular Medicine ,medicine.symptom ,Medicinal & Biomolecular Chemistry ,Allosteric regulation ,Marine Biology ,Biology ,Cyanobacteria ,Peptides, Cyclic ,Article ,Dipeptidyl peptidase ,03 medical and health sciences ,medicine ,Humans ,Pharmacology ,010405 organic chemistry ,Organic Chemistry ,Carcinoma ,Molecular ,Antitumor ,In vitro ,0104 chemical sciences ,030104 developmental biology ,Enzyme ,Complementary and alternative medicine ,chemistry ,Mechanism of action ,Cell culture ,Chemical Sciences ,Drug Screening Assays, Antitumor ,Peptides - Abstract
Integrating LC-MS/MS molecular networking and bioassay-guided fractionation enabled the targeted isolation of a new and bioactive cyclic octapeptide, samoamide A (1), from a sample of cf. Symploca sp. collected in American Samoa. The structure of 1 was established by detailed 1D and 2D NMR experiments, HRESIMS data, and chemical degradation/chromatographic (e.g., Marfey’s analysis) studies. Pure compound 1 was shown to have in vitro cytotoxic activity against several human cancer cell lines in both traditional cell culture and zone inhibition bioassays. Although there was no particular selectivity between the cell lines tested for samoamide A, the most potent activity was observed against H460 human non-small cell lung cancer cells (IC50 = 1.1 μM). Molecular modeling studies suggested that one possible mechanism of action for 1 is the inhibition of the enzyme dipeptidyl peptidase (CD26, DPP4) at a reported allosteric binding site, which could lead to many downstream pharmacological effects. However, this interaction was moderate when tested in vitro at up to 10 μM, and only resulted in about 16% peptidase inhibition. Combining bioassay screening with the cheminformatics strategy of LC-MS/MS molecular networking as a discovery tool expedited the targeted isolation of a natural product possessing both a novel chemical structure and a desired biological activity.
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- 2017
13. The changing motivations of students’ use of lecture podcasts across a semester: an extended theory of planned behaviour approach
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Kyra Hamilton, Nathan D. Moss, Julie A. Hansen, and Katherine M. White
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Higher education ,business.industry ,media_common.quotation_subject ,Audio equipment ,E-learning (theory) ,Theory of planned behavior ,Information Dissemination ,Education ,Likert scale ,Perception ,ComputingMilieux_COMPUTERSANDEDUCATION ,Mathematics education ,Normative ,Psychology ,business ,Social psychology ,media_common - Abstract
We extended the previous work of Moss, O’Connor and White, to include a measure of group norms within the theory of planned behaviour (TPB), to examine the influences on students’ decisions to use lecture podcasts as part of their learning. Participants (N = 90) completed the extended TPB predictors before semester began (Time 1) and mid-semester (Time 2) and reported on their podcast use at mid-semester (Time 2) and end of semester (Time 3). We found that attitudes and perceived social pressures were important in informing intentions at both time points. At Time 1, perceptions of control over performing the behaviour and, at Time 2, perceptions of whether podcast use was normative among fellow students (group norms) also predicted intended podcast use. Intentions to use podcasting predicted self-reported use at both Time 2 and Time 3. These results provide important applied information for educators to encourage student use of novel on-line educational tools.
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- 2014
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14. High-level semi-synthetic production of the potent antimalarial artemisinin
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Kirsten R. Benjamin, D. Dengrove, T. Treynor, Hanxiao Jiang, Darwin W. Reed, Karl Fisher, Douglas J. Pitera, S. Secrest, Kenneth W. Ellens, Patrick J. Westfall, M. Yu, Rika Regentin, T. Iqbal, A. Main, H. Tsuruta, Derek McPhee, Tizita Horning, R. Vazquez, S. Bajad, Ronald Henry, G. Dang, Keat H. Teoh, Jefferson C. Lievense, J. Galazzo, Scott Fickes, L. Kizer, Don Diola, Anna Tai, K. K. Reiling, B. Lieu, Patrick S. Covello, Lars F. Westblade, G. Dorin, Sara P. Gaucher, M. Fleck, Jacob R. Lenihan, M. Hepp, Michael D. Leavell, N. S. Renninger, Lishan Zhao, D. Melis, Diana Eng, Lan Xu, Jay D. Keasling, Christopher J. Paddon, Nathan A. Moss, T. Geistlinger, Jack D. Newman, Devin R Polichuk, and Yansheng Zhang
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expressed sequence tag ,Artesunate ,yeast ,Artemisia annua ,singlet oxygen ,open reading frame ,Semi synthetic ,Synthetic biology ,chemistry.chemical_compound ,derivatization ,oxidative stress ,Malaria, Falciparum ,Artemisinin ,fermentation ,photochemistry ,Multidisciplinary ,biology ,stereochemistry ,Artemisinins ,enzyme activity ,Genetic Engineering ,drug potency ,Biotechnology ,medicine.drug ,chemical reaction ,esterification ,Molecular Sequence Data ,Plasmodium falciparum ,malaria ,biological production ,Saccharomyces cerevisiae ,Metabolic engineering ,Antimalarials ,parasitic diseases ,medicine ,protein expression ,antimalarial agent ,business.industry ,extractive fermentation ,biology.organism_classification ,Combinatorial chemistry ,disease treatment ,Biosynthetic Pathways ,artemisinin ,chemistry ,fed batch fermentation ,Fermentation ,business - Abstract
Saccharomyces cerevisiae is engineered to produce high concentrations of artemisinic acid, a precursor of the artemisinin used in combination therapies for malaria treatment; an efficient and practical chemical process to convert artemisinic acid to artemisinin is also developed. Artemisinin-based combination therapies are the treatment of choice for uncomplicated Plasmodium falciparum malaria, but the supply of plant-derived artemisinin can sometimes be unreliable, causing shortages and high prices. This manuscript describes a viable industrial process for the production of semisynthetic artemisinin, with the potential to help stabilize artemisinin supply. The process uses Saccharomyces cerevisiae yeast engineered to produce high yields of artemisinic acid, a precursor of artemisinin. The authors have also developed an efficient and scalable chemical process to convert artemisinic acid to artemisinin. In 2010 there were more than 200 million cases of malaria, and at least 655,000 deaths1. The World Health Organization has recommended artemisinin-based combination therapies (ACTs) for the treatment of uncomplicated malaria caused by the parasite Plasmodium falciparum. Artemisinin is a sesquiterpene endoperoxide with potent antimalarial properties, produced by the plant Artemisia annua. However, the supply of plant-derived artemisinin is unstable, resulting in shortages and price fluctuations, complicating production planning by ACT manufacturers2. A stable source of affordable artemisinin is required. Here we use synthetic biology to develop strains of Saccharomyces cerevisiae (baker’s yeast) for high-yielding biological production of artemisinic acid, a precursor of artemisinin. Previous attempts to produce commercially relevant concentrations of artemisinic acid were unsuccessful, allowing production of only 1.6 grams per litre of artemisinic acid3. Here we demonstrate the complete biosynthetic pathway, including the discovery of a plant dehydrogenase and a second cytochrome that provide an efficient biosynthetic route to artemisinic acid, with fermentation titres of 25 grams per litre of artemisinic acid. Furthermore, we have developed a practical, efficient and scalable chemical process for the conversion of artemisinic acid to artemisinin using a chemical source of singlet oxygen, thus avoiding the need for specialized photochemical equipment. The strains and processes described here form the basis of a viable industrial process for the production of semi-synthetic artemisinin to stabilize the supply of artemisinin for derivatization into active pharmaceutical ingredients (for example, artesunate) for incorporation into ACTs. Because all intellectual property rights have been provided free of charge, this technology has the potential to increase provision of first-line antimalarial treatments to the developing world at a reduced average annual price.
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- 2013
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15. REGULAR EXERCISE PARTICIPATION MEDIATES THE AFFECTIVE RESPONSE TO ACUTE BOUTS OF VIGOROUS EXERCISE
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Mats Å. Hallgren, Nathan D. Moss, and Paul Gastin
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exercise adherence ,lcsh:Sports ,lcsh:GV557-1198.995 ,affect ,mood ,lcsh:Sports medicine ,anxiety ,lcsh:RC1200-1245 ,Exercise - Abstract
Physical inactivity is a leading factor associated with cardiovascular disease and a major contributor to the global burden of disease in developed countries. Subjective mood states associated with acute exercise are likely to influence future exercise adherence and warrant further investigation. The present study examined the effects of a single bout of vigorous exercise on mood and anxiety between individuals with substantially different exercise participation histories. Mood and anxiety were assessed one day before an exercise test (baseline), 5 minutes before (pre-test) and again 10 and 25 minutes post-exercise. Participants were 31 university students (16 males, 15 females; Age M = 20), with 16 participants reporting a history of regular exercise with the remaining 15 reporting to not exercise regularly. Each participant completed an incremental exercise test on a Monark cycle ergometer to volitional exhaustion. Regular exercisers reported significant post-exercise improvements in mood and reductions in state anxiety. By contrast, non-regular exercisers reported an initial decline in post-exercise mood and increased anxiety, followed by an improvement in mood and reduction in anxiety back to pre-exercise levels. Our findings suggest that previous exercise participation mediates affective responses to acute bouts of vigorous exercise. We suggest that to maximise positive mood changes following exercise, practitioners should carefully consider the individual's exercise participation history before prescribing new regimes.
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- 2010
16. Psychosocial predictors of the use of enhanced podcasting in student learning
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Katherine M. White, Nathan D. Moss, and Erin L. O'Connor
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Medical education ,Higher education ,business.industry ,E-learning (theory) ,Perspective (graphical) ,Theory of planned behavior ,Human-Computer Interaction ,Arts and Humanities (miscellaneous) ,Social cognition ,ComputingMilieux_COMPUTERSANDEDUCATION ,Student learning ,business ,Psychology ,Construct (philosophy) ,Psychosocial ,Social psychology ,ComputingMilieux_MISCELLANEOUS ,General Psychology - Abstract
The current study examined the influence of psychosocial constructs, from a theory of planned behavior (TPB) perspective, to predict university students' (N=159) use of a newly offered on-line learning tool, enhanced podcasts. Pre-semester, students completed questionnaires assessing the TPB predictors (attitude, subjective norm, perceived behavioral control) related to intended enhanced podcast use until the middle of semester. Mid-semester, students completed similar items relating to podcast use until the end of semester. Self-report measures of podcast use were obtained at the middle and end of semester. At both time points, students' attitudes predicted their intentions and, at the initial time point, subjective norm also predicted intended podcast use. An examination of the beliefs underlying attitudes, the only construct to predict intentions at both time points, revealed differences between those students higher, rather than lower on intentions to use the podcasts, especially for the perceived educational benefits of podcast use later in the semester. Intentions to use enhanced podcasting only predicted self-reported use in the second half of the semester. Overall, this study identified some of the determinants which should be considered by those aiming to encourage student use of novel on-line educational tools.
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- 2010
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17. Use of pantothenate as a metabolic switch increases the genetic stability of farnesene producing Saccharomyces cerevisiae
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Derek Abbott, Sara P. Gaucher, Peter Jackson, Judith R. Denery, Bonny Lieu, Robert H. Dahl, Celeste M. Sandoval, Tizita Horning, Adam L. Meadows, Nathan A. Moss, and Marites Ayson
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Growth medium ,Saccharomyces cerevisiae Proteins ,Farnesene ,Saccharomyces cerevisiae ,Bioengineering ,Biology ,biology.organism_classification ,Applied Microbiology and Biotechnology ,Yeast ,Sterol ,Genomic Instability ,Pantothenic Acid ,chemistry.chemical_compound ,Genetic Enhancement ,chemistry ,Biochemistry ,Metabolic Engineering ,Bioreactor ,Flux (metabolism) ,Sesquiterpenes ,Fatty acid synthesis ,Biotechnology - Abstract
We observed that removing pantothenate (vitamin B5), a precursor to co-enzyme A, from the growth medium of Saccharomyces cerevisiae engineered to produce β-farnesene reduced the strain׳s farnesene flux by 70%, but increased its viability, growth rate and biomass yield. Conversely, the growth rate and biomass yield of wild-type yeast were reduced. Cultivation in media lacking pantothenate eliminates the growth advantage of low-producing mutants, leading to improved production upon scale-up to lab-scale bioreactor testing. An omics investigation revealed that when exogenous pantothenate levels are limited, acyl-CoA metabolites decrease, β-oxidation decreases from unexpectedly high levels in the farnesene producer, and sterol and fatty acid synthesis likely limits the growth rate of the wild-type strain. Thus pantothenate supplementation can be utilized as a "metabolic switch" for tuning the synthesis rates of molecules relying on CoA intermediates and aid the economic scale-up of strains producing acyl-CoA derived molecules to manufacturing facilities.
- Published
- 2014
18. Lipopolysaccharide-Induced Biliary Factors Enhance Invasion ofSalmonella enteritidisin a Rat Model
- Author
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Graham D. F. Jackson, Abul F. M. W. Islam, Yung Dai, Andrew M. Collins, M. S. R. Smith, and Nathan D. Moss
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Lipopolysaccharides ,Male ,Necrosis ,Lipopolysaccharide ,Salmonella enteritidis ,Immunology ,Biology ,Microbiology ,Pathogenesis ,chemistry.chemical_compound ,medicine ,Animals ,Bile ,Mesenteric lymph nodes ,Rats, Wistar ,Biliary Tract ,Salmonella Infections, Animal ,Host Response and Inflammation ,Gastrointestinal tract ,Tumor Necrosis Factor-alpha ,Rats ,Disease Models, Animal ,Infectious Diseases ,medicine.anatomical_structure ,Liver ,chemistry ,Biliary tract ,Parasitology ,Tumor necrosis factor alpha ,Lymph Nodes ,medicine.symptom - Abstract
In this study, the role of the hepatobiliary system in the early pathogenesis ofSalmonella enteritidisinfection was investigated in a rat model. Intravenous (i.v.) challenge with lipopolysaccharide (LPS) has previously been shown to enhance the translocation of normal gut flora. We first confirmed that LPS can similarly promote the invasion ofS. enteritidis. Oral infection of outbred Australian Albino Wistar rats with 106to 107CFU ofS. enteritidisled to widespread tissue invasion after days. If animals were similarly challenged after intravenous administration ofS. enteritidisLPS (3 to 900 μg/kg of body weight), significant invasion of the livers and mesenteric lymph nodes (MLN) occurred within 24 h, with invasion of the liver increasing in a dose-dependent fashion (P< 0.01). If bile was prevented from reaching the intestine by bile duct ligation or cannulation, bacterial invasion of the liver and MLN was almost totally abrogated (P< 0.001). As i.v. challenge with LPS could induce the delivery of inflammatory mediators into the bile, biliary tumor necrosis factor alpha (TNF-α) concentrations were measured by bioassay. Biliary concentrations of TNF-α rose shortly after LPS challenge, peaked with a mean concentration of 27.0 ng/ml at around 1 h postchallenge, and returned to baseline levels (3.1 ng/ml) after 2.5 h. Although TNF-α cannot be directly implicated in the invasion process, we conclude that the invasiveness of the enteric pathogenS. enteritidisis enhanced by the presence of LPS in the blood and that this enhanced invasion is at least in part a consequence of the delivery of inflammatory mediators to the gastrointestinal tract by the hepatobiliary system.
- Published
- 2000
- Full Text
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19. Managing Attitudes Toward High Achievers: The Influence 0f Group Discussion
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Nathan D. Moss, Ian P. Purcell, Floyd H. Bolitho, Stuart C. Carr, and Susan E. Brew
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Group discussion ,Social Psychology ,Social work ,General Social Sciences ,Resistance (psychoanalysis) ,Interpersonal communication ,Psychology ,Social psychology ,Variety (cybernetics) - Abstract
For a variety of cultural, contextual, and interpersonal reasons, individual achievement often meets with potentially demotivating resistance from the group. In groups of between three and seven members, 397 psychology and social work students, in East and Northern Australian cities (Newcastle and Darwin), indicated their attitudes toward high achievers before, during, and after a group consensus task. In each location, and at both individual and group levels of analysis, initially slightly pro-achiever attitudes, following discussion of the issues, became polarized. Such changes, across diverse settings and groups, indicate that group discussion may be a robust tool, both for empowering teams and encouraging support for individual initiative.
- Published
- 1999
- Full Text
- View/download PDF
20. Gastrin release and gastric acid secretion in the rat infected with either Helicobacter felis or Helicobacter heilmannii
- Author
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Adrian Lee, Suzanne Arvidsson, Håkan Larsson, Soultana Ottosson, Nathan D. Moss, Michael F. Dixon, and Stephen J. Danon
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medicine.medical_specialty ,Helicobacter Infections ,Gastric Acid ,Internal medicine ,Gastrins ,medicine ,Animals ,Helicobacter ,Antrum ,Gastrin ,Inflammation ,Hepatology ,biology ,digestive, oral, and skin physiology ,Gastroenterology ,Helicobacter heilmannii ,Helicobacter pylori ,biology.organism_classification ,Urease ,Rats ,Disease Models, Animal ,Endocrinology ,Helicobacter felis ,Gastric acid ,Female ,Gastritis ,medicine.symptom - Abstract
Helicobacter pylori infection in humans has been shown to be associated with changes in gastric physiology, including exaggerated basal and meal-stimulated gastrin levels. This has been suggested to be due to the direct effects of the bacterium through inflammation and its urease enzyme. The gastric bacteria Helicobacter felis and Helicobacter heilmannii colonize the antrum of rats in large numbers and induce no significant inflammatory response. Thus, the direct effect of Helicobacter infection on gastric physiology, independent of gastritis, could be studied. Basal, freely fed and stimulated acid and gastrin levels were recorded from animals infected with H. felis, H. heilmannii or uninfected controls over a 30 week period. No significant difference was found between freely fed gastrin over 7 weeks or fasting gastrin over 24 weeks or basal and stimulated acid over 30 weeks between all three groups. Triple therapy did not alter gastrin or acid output. The antrum of all Helicobacter-infected rats was well colonized; triple therapy cleared H. felis but not H. heilmannii. Very little inflammation was seen in control or Helicobacter-infected animals. In conclusion, Helicobacter-induced effects on gastric physiology are unlikely to be due to direct bacterial effects, but are best explained by other factors (i.e. inflammatory damage).
- Published
- 1998
- Full Text
- View/download PDF
21. Regular exercise participation mediates the affective response to acute bouts of vigorous exercise
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Mats Å, Hallgren, Nathan D, Moss, and Paul, Gastin
- Subjects
Research Article - Abstract
Physical inactivity is a leading factor associated with cardiovascular disease and a major contributor to the global burden of disease in developed countries. Subjective mood states associated with acute exercise are likely to influence future exercise adherence and warrant further investigation. The present study examined the effects of a single bout of vigorous exercise on mood and anxiety between individuals with substantially different exercise participation histories. Mood and anxiety were assessed one day before an exercise test (baseline), 5 minutes before (pre-test) and again 10 and 25 minutes post-exercise. Participants were 31 university students (16 males, 15 females; Age M = 20), with 16 participants reporting a history of regular exercise with the remaining 15 reporting to not exercise regularly. Each participant completed an incremental exercise test on a Monark cycle ergometer to volitional exhaustion. Regular exercisers reported significant post-exercise improvements in mood and reductions in state anxiety. By contrast, non-regular exercisers reported an initial decline in post-exercise mood and increased anxiety, followed by an improvement in mood and reduction in anxiety back to pre-exercise levels. Our findings suggest that previous exercise participation mediates affective responses to acute bouts of vigorous exercise. We suggest that to maximise positive mood changes following exercise, practitioners should carefully consider the individual's exercise participation history before prescribing new regimes. Key pointsPrevious exercise participation mediates the affective response to acute bouts of vigorous exercise.Regular exercisers respond positively to acute bouts of vigorous physical activity, reporting less state anxiety and fatigue, and more vigour.Non-regular exercisers respond with an initial reduction in positive mood states, followed by a rebound to baseline levels 25 minutes post-exercise.To maximise positive post-exercise mood states, especially among novice exercisers, practitioners should carefully consider previous exercise participation when prescribing new exercise regimes.
- Published
- 2010
22. A review of quality of life and psychosocial issues in scoliosis
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Megan J. Tones, David W. Polly, and Nathan D. Moss
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Adult ,medicine.medical_specialty ,Adolescent ,business.industry ,Family functioning ,medicine.medical_treatment ,Psychological intervention ,Scoliosis ,medicine.disease ,Affect (psychology) ,Support group ,Quality of life (healthcare) ,Treatment Outcome ,medicine ,Physical therapy ,Body Image ,Quality of Life ,Humans ,Orthopedics and Sports Medicine ,In patient ,Disabled Persons ,Neurology (clinical) ,business ,Psychosocial - Abstract
Study Design. Recent literature regarding the psychological impact of scoliosis was reviewed. Objective. To determine the impact of scoliosis on health-related quality of life (HRQL), psychosocial functioning, and body image to improve patient outcomes. Summary of Background Data. Adolescents and adults with adolescent idiopathic scoliosis have been known to score lower than healthy controls on HRQL measures. However, HRQL instruments may not adequately capture psychological distress experienced by patients. Methods. Research papers concerning HRQL and psychosocial factors in patients with scoliosis were reviewed. Results. Studies of psychosocial health and body image have revealed that functioning in these domains may affect compliance behavior and satisfaction with treatment outcomes among adolescent patients. Psychosocial and body image disturbance is less marked in patients with good social or family functioning, or patients who exercise regularly or are psychologically healthy. Adults with scoliosis generally display fewer psychological problems than adolescents. However, adults with scoliosis may experience psychosocial limitations due to poor physical health or body image disturbance. Support group membership can improve psychosocial health in adults with scoliosis. Conclusions. Adolescent patients with scoliosis may experience psychosocial difficulties, especially while undergoing treatment for scoliosis. Interventions aimed at managing psychosocial or body image disturbances may help to ameliorate the potentially negative impact of scoliosis on these facets of life.
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- 2006
23. Paradoxical effects of hedonic disparities in negative anticipatory contrast
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Nathan D. Moss, E. James Kehoe, and J. Christopher Clarke
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Male ,Taste ,Sucrose ,Experimental and Cognitive Psychology ,Developmental psychology ,Behavioral Neuroscience ,chemistry.chemical_compound ,Sucrose solution ,Saccharin ,Animals ,Food science ,Rats, Wistar ,Classical conditioning ,Contrast (statistics) ,Feeding Behavior ,Animal Feed ,Rats ,Satiety Response ,chemistry ,Sweetening Agents ,Conditioning ,Soybeans ,Psychology ,Energy Intake ,Soy milk - Abstract
Negative anticipatory contrast (NAC) occurs when the presentation of two solutions in sequence over a number of trials leads to the suppression in consumption of the first solution. A hedonic 'disparity' between the two solutions may lead to this suppression. However, what the relative role of the gustatory properties versus the nutricaloric loads of the two solutions is in determining the acquisition of NAC is uncertain. Previous experiments have typically used saccharine and sucrose solutions, which resemble each other in gustatory properties yet differ in their nutricaloric loads. In contrast, the present experiments used soy milk and sucrose solutions, which are both highly nutritive but differ in their gustatory properties. Soy milk was found to have a higher hedonic value than a 16% sucrose solution as measured by both choice and absolute consumption. According to a hedonic disparity hypothesis, NAC should have occurred using a sucrose-soy sequence but not a soy-sucrose sequence. Paradoxically, the sucrose-soy sequence failed to yield NAC, but the soy-sucrose sequence did yield a repeatable, significant NAC. A consideration of the available theory and research indicated that NAC may be explained by a strong conditioning of a satiety response produced by sucrose that opposes the conditioning of sucrose's positive hedonic response.
- Published
- 2002
24. In vivo behavior of a Helicobacter pylori SS1 nixA mutant with reduced urease activity
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Janette M. Harro, Kylie J. Nolan, David J. McGee, Jani O'Rourke, Tassia Kolesnikow, Adrian Lee, Hazel M. Mitchell, John Wilson, Nathan D. Moss, Harry L. T. Mobley, and Stephen J. Danon
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Urease ,Immunology ,Mutant ,Biology ,Microbiology ,Mice ,Bacterial Proteins ,medicine ,Gastric mucosa ,Animals ,Colonization ,Cation Transport Proteins ,chemistry.chemical_classification ,Mice, Inbred BALB C ,Helicobacter pylori ,Stomach ,Kanamycin ,biology.organism_classification ,Molecular Pathogenesis ,Mice, Inbred C57BL ,Infectious Diseases ,medicine.anatomical_structure ,Enzyme ,chemistry ,Mutagenesis ,biology.protein ,Parasitology ,Female ,Bacteria ,medicine.drug - Abstract
Helicobacter pylori mutants devoid of urease activity fail to colonize the gastric mucosa of mice; however, the effect of decreased levels of urease on colonization has not been examined. The nixA gene, required for full urease activity, encodes a cytoplasmic membrane nickel transporter that imports nickel ions and leads to incorporation of nickel ions into apourease. A nixA mutant of the Sydney strain of H. pylori (SS1) was constructed by disruption of the nixA gene with a kanamycin resistance cassette. This mutant retained only half the urease activity of the wild-type (wild-type) SS1 strain. C57BL/6j ( n = 75) and BALB/c ( n = 75) mice were inoculated independently with the wild-type or the nixA strain. The level and distribution of colonization were assessed by bacterial colony counts and histological grading at 4, 12, and 24 weeks postinfection. Colonization levels of the nixA strain in BALB/c mice were significantly lower compared with SS1 ( P = 0.005), while colonization in C57BL/6j mice was similar for both the wild-type and mutant strains. Subtle differences in colonization of the different regions of the stomach, determined by microscopic grading, were observed between wild-type SS1 and the nixA strain in BALB/c mice. On the contrary, when C57BL/6j ( n = 35) and BALB/c ( n = 35) mice were coinfected with the wild-type and nixA strains simultaneously, the nixA mutant failed to colonize and was outcompeted by the wild-type SS1 strain, which established normal levels of colonization. These results demonstrate the importance of the nixA gene for increasing the fitness of H. pylori for gastric colonization. Since nixA is required for full urease activity, the decreased fitness of the nixA mutant is likely due to reduced urease activity; however, pleiotropic effects of the mutation cannot be completely ruled out.
- Published
- 2002
25. Body weight attributions and eating self-efficacy in adolescence
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Nathan D. Moss and Mark R. Dadds
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Male ,Personality Tests ,Adolescent ,Diet, Reducing ,media_common.quotation_subject ,Medicine (miscellaneous) ,Toxicology ,Body weight ,Social Environment ,Developmental psychology ,Body Mass Index ,Personality ,Humans ,Obesity ,Internal-External Control ,Target weight ,media_common ,Self-efficacy ,Body Weight ,Social environment ,Control subjects ,Psychiatry and Mental health ,Clinical Psychology ,Locus of control ,Female ,Attribution ,Psychology - Abstract
In an attempt to find an optimum age during adolescence to target weight control programs successfully, 189 adolescents were surveyed using measures of eating self-efficacy and body-weight attributions. The sensitivity of the attribution measures was assessed in a pilot study using 100 adolescents. The major experiment indicated higher levels of eating control at 12 and 13 years of age, decreasing with age. However, the locus of control measure indicated an increase in internal attributions with age. It is argued that this paradox between degree of control subjects reported over their eating and the degree subjects believed their body weight to be controlled internally may have important clinical implications and should be investigated further.
- Published
- 1991
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