87 results on '"Narkiewicz J"'
Search Results
2. Pilgrim's OSF DCE-based services architecture
- Author
-
Narkiewicz, J. David, Girkar, Mahesh, Srivastava, Manoj, Gaylord, Arthur S., Rahman, Mustafizur, Goos, Gerhard, editor, Hartmanis, Juris, editor, and Schill, Alexander, editor
- Published
- 1993
- Full Text
- View/download PDF
3. Autopilot supported by nonlinear model following reconfigurable flight control system
- Author
-
Zugaj, M. and Narkiewicz, J.
- Subjects
Automatic pilot (Airplanes) -- Management ,Automatic pilot (Airplanes) -- Equipment and supplies ,Flight control systems -- Design and construction ,Circuit design -- Methods ,Circuit designer ,Integrated circuit design ,Company business management ,Aerospace and defense industries ,Engineering and manufacturing industries ,Science and technology - Abstract
The reconfigurable flight control system was developed, applying a nonlinear aircraft model following control algorithm to support the autopilot. The model of a six degrees of freedom airplane with nonlinear aerodynamics and second-order dynamics of control system actuators was supplemented by aircraft autopilot based on classical control laws. The autopilot commands the aircraft in normal operations. In failure cases, the control system reconfiguration is performed using comparison of control external loads on damaged aircraft with loads in undamaged aircraft operation. Fuzzy logic method produces the control signals preventing the consequences of failures. The objective of reconfiguration is to continue the performed flight, including maneuvers, and, if this is not possible, to obtain the steady flight. The aircraft simulation model was tested for consistency with the expected flight performance. The selected autopilot functions were validated and reconfiguration applied in selected cases of failures. The final simulations proved the efficiency of reconfiguration. DOI: 10.1061/(ASCE)AS.1943-5525.0000050 CE Database subject headings: Aerospace engineering; Aircraft; Control systems; Safety. Author keywords: Aerospace engineering; Aircraft; Control systems; Transportation safety.
- Published
- 2010
4. Autopilot for reconfigurable flight control system
- Author
-
Zugaj, M. and Narkiewicz, J.
- Subjects
Automatic pilot (Airplanes) -- Design and construction ,Aerospace engineering -- Research ,Aerospace and defense industries ,Engineering and manufacturing industries ,Science and technology - Abstract
The main factor in design and operation of aircraft is safety of an airplane. The 'safety culture' developed in aeronautics results in detailed regulations and certification procedures in all phases of aircraft design and operation. But despite that, aircraft safety depends on several unpredictable factors, such as the hostile actions both inside and outside of the aircraft. When failures occur during the flight, the most important actions are aimed at maintaining the aircraft controllability. The aircraft control system should be fault tolerant and ensure aircraft controllability in the event of the failure of a part of the flight control system. In this paper the influence of control surface failures on autopilot operation has been investigated. The autopilot is designed for business jet airplanes and fulfills the main functions of the real autopilot system in longitudinal and lateral directions. The autopilot structure allows implementation of various methods of reconfiguration for aircraft protection. DOI: 10.1061/(ASCE)0893-1321(2009)22:1(78) CE Database subject headings: Aerospace engineering: Aircraft: Control systems; Safety.
- Published
- 2009
5. Mission and system architecture for an operational network of earth observation satellite nodes
- Author
-
European Commission, Tonetti, S., Cornara, S., Vicario de Miguel, G., Pierotti, S., Cote, J., Araguz, C., Alarcón, E., Camps, Adriano, Llaveria, David, Lancheros, Estefany, Ruíz-de-Azúa, Joan Adrià, Bou Balust, Elisenda, Rodríguez, Pedro, Sochacki, M., Narkiewicz, J., Golkar, Alessandro, Lluch i Cruz, I., Matevosyan, H., European Commission, Tonetti, S., Cornara, S., Vicario de Miguel, G., Pierotti, S., Cote, J., Araguz, C., Alarcón, E., Camps, Adriano, Llaveria, David, Lancheros, Estefany, Ruíz-de-Azúa, Joan Adrià, Bou Balust, Elisenda, Rodríguez, Pedro, Sochacki, M., Narkiewicz, J., Golkar, Alessandro, Lluch i Cruz, I., and Matevosyan, H.
- Abstract
Nowadays, constellations and distributed networks of satellites are emerging as clear development trends in the space system market to enable augmentation, enhancement, and possibilities of new applications for future Earth Observation (EO) missions. While the adoption of these satellite architectures is gaining momentum for the attaining of ever more stringent application requirements and stakeholder needs, the efforts to analyze their benefits and suitability, and to assess their impact for future programmes remains as an open challenge to the EO community. In this context, this paper presents the mission and system architecture conceived during the Horizon 2020 ONION project, a European Union research activity that proposes a systematic approach to the optimization of EO space infrastructures. In particular, ONION addressed the design of complementary assets that progressively supplement current programs and took part in the exploration of needs and implementation of architectures for the Copernicus Space Component for EO. Among several use cases considered, the ONION project focused on proposing system architectures to provide improved revisit time, data latency and image resolution for a demanding application scenario of interest: Marine Weather Forecast (MWF). A set of promising system architectures has been subject of a comprehensive assessment, based on mission analysis expertise and detailed simulation for evaluating several key parameters such as revisit time and data latency of each measurement of interest, on-board memory evolution and power budget of each satellite of the constellation, ground station contacts and inter-satellite links. The architectures are built with several heterogeneous satellite nodes distributed in different orbital planes. Each platform can embark different instrument sets, which provide the required measurements for each use case. A detailed mission analysis has then been performed to the selected architecture for the MWF use ca
- Published
- 2020
6. Bilans jako źródło danych w analizie ryzyka działalności przedsiębiorstwa
- Author
-
Narkiewicz, J. and Uniwersytet Marii Curie – Skłodowskiej w Lublinie
- Published
- 2019
7. Mission and system architecture for an operational network of earth observation satellite nodes
- Author
-
Tonetti, S., Cornara, S., Vicario Miguel, G., Pierotti, S., Cote, J., Araguz, C., Alarcón, E., Camps, A., Llaveria, D., Lancheros, E., Ruiz-De-Azua, J. A., Bou-Balust, E., Rodríguez, P., Mateusz Sochacki, Narkiewicz, J., Universitat Politècnica de Catalunya. Departament d'Enginyeria Electrònica, Universitat Politècnica de Catalunya. Departament de Teoria del Senyal i Comunicacions, Universitat Politècnica de Catalunya. Doctorat en Teoria del Senyal i Comunicacions, Universitat Politècnica de Catalunya. Doctorat en Enginyeria Telemàtica, Universitat Politècnica de Catalunya. EPIC - Energy Processing and Integrated Circuits, Universitat Politècnica de Catalunya. RSLAB - Grup de Recerca en Teledetecció, and Universitat Politècnica de Catalunya. WNG - Grup de xarxes sense fils
- Subjects
Satèl·lits artificials ,Earth observation ,Remote-sensing images ,Mission architecture ,Small satellites ,Marine weather forecast ,Imatges satel·litàries ,Meteorologia marítima -- Aparells i instruments ,Enginyeria de la telecomunicació::Radiocomunicació i exploració electromagnètica::Satèl·lits i ràdioenllaços [Àrees temàtiques de la UPC] ,System architecture ,Constellation - Abstract
Over the next few years, Europe will take important steps towards implementing the architecture of the Copernicus Space Component for Earth Observation (EO), fulfilling the needs of stakeholders concerned with land monitoring, marine monitoring, atmosphere monitoring, emergency management, security, and climate change. Nowadays, constellations and distributed networks of satellites are emerging as clear development trends in the space system market to enable augmentation, enhancement, and possibilities of new applications for future EO Missions. It is of paramount importance for Europe to properly analyse these trends and assess whether or not they could provide a competitive advantage for EO systems. The paper presents the mission and system architecture design of the H2020 ONION project, a European Union research activity that proposes a system concept to supplement in a progressive way the current European EO infrastructures and to serve emerging needs in an optimal fashion. Among several use cases considered, the ONION project focussed on proposing system architectures to provide competitive revisit time, data latency and image resolution for a demanding application scenario of interest: marine weather forecast (MWF). A set of promising system architectures has been subject of a comprehensive assessment, based on mission analysis expertise and detailed simulation for evaluating several key parameters such as revisit time and data latency of each measurement of interest, on-board memory evolution and power budget of each satellite of the constellation, ground station contacts and inter-satellite links. The architectures are built with several heterogeneous satellite nodes distributed in different orbital planes. Each platform can embark different instrument sets, which provide the required measurements for each use case. A detailed mission analysis has then been applied to the selected architecture for the MWF use case, including refined data flow analysis to optimize system resources; refined power budget analysis; delta-V and fuel budget analysis considering all the possible phases of the mission, encompassing correction of launcher injection errors and acquisition of nominal satellite position inside the constellation, orbit maintenance to control altitude, collision avoidance to avoid collision with space debris objects and end-of-life (EOL) disposal to comply with EOL guidelines. The relevance of the system architecture selected for the MWF has been evaluated for 3 use cases of interest (arctic sea-ice monitoring, maritime fishery pressure and aquaculture, agricultural hydric stress) to show the versatility and the feasibility of the chosen architecture to be adapted for other EO applications.
- Published
- 2019
8. Pilgrim's OSF DCE-based services architecture
- Author
-
Narkiewicz, J. David, primary, Girkar, Mahesh, additional, Srivastava, Manoj, additional, Gaylord, Arthur S., additional, and Rahman, Mustafizur, additional
- Published
- 1993
- Full Text
- View/download PDF
9. Optimized model-based design space exploration of distributed multi-orbit multi-platform Earth observation spacecraft architectures
- Author
-
Universitat Politècnica de Catalunya. Departament d'Enginyeria Electrònica, Universitat Politècnica de Catalunya. Departament de Teoria del Senyal i Comunicacions, Escola Tècnica Superior d'Enginyeria de Telecomunicació de Barcelona, Universitat Politècnica de Catalunya. Departament d'Organització d'Empreses, Universitat Politècnica de Catalunya. RSLAB - Grup de Recerca en Teledetecció, Universitat Politècnica de Catalunya. EPIC - Energy Processing and Integrated Circuits, Araguz López, Carles, Llaveria Godoy, David, Lancheros Sepulveda, Estefany Maria, Bou Balust, Elisenda, Camps Carmona, Adriano José, Alarcón Cot, Eduardo José, Lluch, I., Matevosyan, H., Golkar, Alessandro, Tonetti, Stefania, Cornara, Stefania, Pierotti, S., Rodríguez Mondelo, Pedro Manuel, Alvaro Sanchez, A., Narkiewicz, J., Universitat Politècnica de Catalunya. Departament d'Enginyeria Electrònica, Universitat Politècnica de Catalunya. Departament de Teoria del Senyal i Comunicacions, Escola Tècnica Superior d'Enginyeria de Telecomunicació de Barcelona, Universitat Politècnica de Catalunya. Departament d'Organització d'Empreses, Universitat Politècnica de Catalunya. RSLAB - Grup de Recerca en Teledetecció, Universitat Politècnica de Catalunya. EPIC - Energy Processing and Integrated Circuits, Araguz López, Carles, Llaveria Godoy, David, Lancheros Sepulveda, Estefany Maria, Bou Balust, Elisenda, Camps Carmona, Adriano José, Alarcón Cot, Eduardo José, Lluch, I., Matevosyan, H., Golkar, Alessandro, Tonetti, Stefania, Cornara, Stefania, Pierotti, S., Rodríguez Mondelo, Pedro Manuel, Alvaro Sanchez, A., and Narkiewicz, J.
- Abstract
Satellite architectures where networked, heterogeneous observation nodes capture data in a distributed manner are seen as feasible solutions to address the needs of next-generation Earth observation services (i.e. higher spatial, spectral and temporal resolutions at viable costs). Nevertheless, the problems that designers face when approaching these systems-of-systems are still eclipsed by the heterogeneity, dimensionality and multi-level complexity of those. In spite of the many underlying technological challenges, how to optimally architect distributed satellite systems, remains an open source of debate. In this context, this paper presents a design-oriented methodology that is aimed at providing high-level design solutions for this type of architectures in generic EO use-cases. In order to find optimal solutions, the methodology detailed in this paper is grounded on an aggregated architectural figure-of-merit that compresses: (a) system-level performance metrics; (b) use-case requirements; (c) development and launch costs; and (d) a set of architectural quality attributes. The latter contributing term models, assesses and weights several of the so-called 'ilities' of an architecture and allows to select designs that exhibit some desired qualities. With a dimensionality of more than five thousand architectural alternatives, the study has been illustrated with a marine weather forecast use-case. Both the exploration of design alternatives and the analysis of the results have shown the benefits of medium and small satellite platforms and have stressed their potential in the design of distributed satellite systems. Finally, this paper concludes by suggesting that this very optimization framework and methodology could also be used for a quantitative gap analysis aiming at deriving the technological road map for future engineering teams., Peer Reviewed, Postprint (published version)
- Published
- 2018
10. Design and optimization of a polar satellite mission to complement the Copernicus System
- Author
-
Universitat Politècnica de Catalunya. Departament d'Enginyeria Electrònica, Universitat Politècnica de Catalunya. Departament de Teoria del Senyal i Comunicacions, Universitat Politècnica de Catalunya. EPIC - Energy Processing and Integrated Circuits, Universitat Politècnica de Catalunya. RSLAB - Grup de Recerca en Teledetecció, Alarcón Cot, Eduardo José, Alvaro Sanchez, A., Araguz López, Carles, Barrot, G., Bou Balust, Elisenda, Camps Carmona, Adriano José, Cornara, Stefania, Gutiérrez Peña, Pedro Antonio, Lancheros Sepulveda, Estefany Maria, Lesne, O., Llaveria Godoy, David, Lluch, I., Males, Jan, Mangin, A., Matevosyan, H., Monge, A., Narkiewicz, J., Ourevitch, S., Pierotti, S., Pica, U., Poghosyan, A., Ruiz De Azúa Ortega, Juan Adrián, Hyuk, Park, Universitat Politècnica de Catalunya. Departament d'Enginyeria Electrònica, Universitat Politècnica de Catalunya. Departament de Teoria del Senyal i Comunicacions, Universitat Politècnica de Catalunya. EPIC - Energy Processing and Integrated Circuits, Universitat Politècnica de Catalunya. RSLAB - Grup de Recerca en Teledetecció, Alarcón Cot, Eduardo José, Alvaro Sanchez, A., Araguz López, Carles, Barrot, G., Bou Balust, Elisenda, Camps Carmona, Adriano José, Cornara, Stefania, Gutiérrez Peña, Pedro Antonio, Lancheros Sepulveda, Estefany Maria, Lesne, O., Llaveria Godoy, David, Lluch, I., Males, Jan, Mangin, A., Matevosyan, H., Monge, A., Narkiewicz, J., Ourevitch, S., Pierotti, S., Pica, U., Poghosyan, A., Ruiz De Azúa Ortega, Juan Adrián, and Hyuk, Park
- Abstract
© 2018 IEEE. Personal use of this material is permitted. Permission from IEEE must be obtained for all other uses, in any current or future media, including reprinting/republishing this material for advertising or promotional purposes,creating new collective works, for resale or redistribution to servers or lists, or reuse of any copyrighted component of this work in other works., IEEE Access Best Multimedia Award 2018, pel video de 4'50'' que acompanya l'article: sobre el sistema ONION (a Distributed Satellite Systems (DSS) concept formed by a Walker-Delta constellation formed by 8 heavy nodes including a SAR-X and an optical imager, and 8 small nodes including a GNSS-R payload. ONION provides innovative solutions to complement the current and planned Copernicus offer, targeting relevant and large user communities), The space industry is currently witnessing two concurrent trends: the increased modularity and miniaturization of technologies and the deployment of constellations of distributed satellite systems. As a consequence of the first trend, the relevance of small satellites in line with the “cheaper and faster” philosophy is increasing. The second one opens up completely new horizons by enabling the design of architectures aimed at improving the performance, reliability, and efficiency of current and future space missions. The EU H2020 ONION project (“Operational Network of Individual Observation Nodes”) has leveraged on the concept of Fractionated and Federated Satellite Systems (FFSS) to develop and design innovative mission architectures resulting in a competitive advantage for European Earth Observation (EO) systems. Starting from the analysis of emerging needs in the European EO market, the solutions to meet these needs are identified and characterized by exploring FFSS. In analogy with terrestrial networks, these systems envision the distribution of satellite functionalities amongst multiple cooperating spacecrafts (nodes of a network), possibly independent, and flying on different orbits. FFSS are considered by many as the future of spacebased infrastructures, as they offer a pragmatic, progressive, and scalable approach to improve existing and future space missions. This work summarizes the main results of the ONION project and the high-level design of the Marine Weather Forecast mission for polar regions., Peer Reviewed, Award-winning, Postprint (author's final draft)
- Published
- 2018
11. Dependence of the capacity ratio on mobile phase composition in liquid adsorption chromatography
- Author
-
Jaroniec, M., Narkiewicz, J., and Borówko, M.
- Published
- 1978
- Full Text
- View/download PDF
12. Determination of the capacity ratio and concentration-time function for stepwise elution with binary mobile phase with help of liquid chromatography data obtained from isocratic elution
- Author
-
Jaroniec, M., Borówko, M., Narkiewicz, J., Patrykiejew, A., and Goŀkiewicz, W.
- Published
- 1979
- Full Text
- View/download PDF
13. Soil humic substances hinder the propagation of prions
- Author
-
Leita, L, Giachin, G, Margon, A, Narkiewicz, J, and Legname, Giuseppe
- Published
- 2013
14. Humic substances underlies the odds of environmental TSEs transmission
- Author
-
Giachin, G, Narkiewicz, J, Scaini, D, Rinki, S, Margon, A, Leita, L, and Legname, Giuseppe
- Published
- 2013
15. Clinical significance of selected angiogenesis and lymphangiogenesis modulators and markers in ovarian cancer patients.
- Author
-
Klasa-Mazurkiewicz, D., primary, Milczek, T., additional, Jarzab, M., additional, Narkiewicz, J., additional, Lipiñska, B., additional, and Wydra, D., additional
- Published
- 2010
- Full Text
- View/download PDF
16. Innovative, reconfigurable simulator of mobile robots to support anti-crisis operations.
- Author
-
Zasuwa, M., Narkiewicz, J., and Bartoszek, J.
- Published
- 2011
- Full Text
- View/download PDF
17. Unsteady aerodynamic loads on an aerofoil with a deflecting tab
- Author
-
Narkiewicz, J. P., primary, Ling, A., additional, and Done, G. T. S., additional
- Published
- 1995
- Full Text
- View/download PDF
18. Overview of smart structure concepts for helicopter rotor control
- Author
-
Narkiewicz, J. P., primary and Done, G. T., additional
- Published
- 1994
- Full Text
- View/download PDF
19. Effects of Local Correlations between Adsorbed Molecules In the Localized Adsorption of Gases on Patch wise Heterogeneous Surfaces
- Author
-
Rudziński, W., Narkiewicz, J., and Patrykiejew, A.
- Published
- 1979
- Full Text
- View/download PDF
20. A SMART INTERNAL VIBRATION SUPPRESSOR FOR A HELICOPTER BLADE—A FEASIBILITY STUDY
- Author
-
Narkiewicz, J. P. and Done, G. T. S.
- Abstract
The concept of a vibration suppression device mounted inside the rotor blade of a helicopter is evaluated. Two problems are considered. First, the possibility of reducing the vibration level by applying generic/non-specific dynamic loads is examined. An optimisation technique is used to provide the most effective parameters of the applied loads. It is shown possible to obtain a reduction in vibration level by applying dynamic loads along the part of the blade span. Next the concept of using an active “bender” type element for vibration suppression mounted inside the blade and attached to the blade main spar is studied. The bender is modelled as an elastic cantilever beam sandwiched on the longitudinal faces normal to the bending plane by layers of piezoelectric material. When an alternating voltage is applied to the piezoelectric layers, the element is excited into a bending motion, which leads to a dynamic force and moment reaction at the attachment point. The performance of such a device is studied using a computer model of a hingeless rotor blade. The bender placement and design parameters are varied in order to obtain insight into their influence on the vibration suppression. For currently practical blade and bender parameters considered it appears that excitation by the blade motion overrides the control available from the piezoelectric device, although future developments in piezoelectric material performance will improve the situation.
- Published
- 1998
- Full Text
- View/download PDF
21. Helicopter modeling and optimal control in autorotation
- Author
-
Przemyslaw Bibik and Narkiewicz, J.
22. Comparison of pupil perimetry and visual perimetry in normal eyes: decibel sensitivity and variability
- Author
-
Hong S, Narkiewicz J, and Randy Kardon
- Subjects
Adult ,Male ,Light ,Humans ,Visual Field Tests ,Female ,Pupil ,Visual Fields ,Reflex, Pupillary ,Sensitivity and Specificity - Abstract
To compare the sensitivity and variability of pupil perimetry with visual perimetry at the same retinal locations in normal subjects.Pupil perimetry was performed on the right and left eyes of 10 normal subjects using a computerized infrared pupillometer equipped to present perimetric light stimuli and record pupil light reflexes. Eleven locations were tested at different intensities along the horizontal meridian of each eye, and the decibel sensitivity of the pupil light reflex was compared with the visual threshold at the same location.The shape and height of the hill of vision (retinal sensitivity) was very similar between the right and left eyes of each individual using either pupil perimetry (R2 = 0.69) or standard threshold perimetry (R2 = 0.62) but was less similar between subjects. Comparisons between pupil and visual sensitivity revealed a lack of correlation at the same retinal location in normal eyes (R2 = 0.19).The high intereye correlation for either pupil or visual sensitivity may provide an important tool for detecting focal or asymmetric visual field damage. Although the basic shape of the sensitivity profile of pupil and visual responses was similar under the conditions of testing, the two did not correlate well within each eye among the normal subjects. This highlights that similarities do exist in the sensitivity profile of the two pathways, but they do not seem to vary in the same proportion between normal individuals.
23. Design and optimization of a polar satellite mission to complement the Copernicus System
- Author
-
Alarcón Cot, Eduardo José, Alvaro Sanchez, A., Araguz López, Carles, Barrot, G., Bou Balust, Elisenda, Camps Carmona, Adriano José, Cornara, Stefania, Gutiérrez Peña, Pedro Antonio, Lancheros Sepulveda, Estefany Maria, Lesne, O., Llaveria Godoy, David, Lluch, I., Males, Jan, Mangin, A., Matevosyan, H., Monge, A., Narkiewicz, J., Ourevitch, S., Pierotti, S., Pica, U., Poghosyan, A., Ruiz de Azúa Ortega, Joan Adrià, Universitat Politècnica de Catalunya. Departament d'Enginyeria Electrònica, Universitat Politècnica de Catalunya. Departament de Teoria del Senyal i Comunicacions, Universitat Politècnica de Catalunya. EPIC - Energy Processing and Integrated Circuits, and Universitat Politècnica de Catalunya. RSLAB - Grup de Recerca en Teledetecció
- Subjects
Marine ,Sensors ,GNSS-R ,Ice ,VIS/NIR/SWIR/LWIR imagers ,Mission ,Constellation ,Satèl·lits artificials en telecomunicació ,Satellite ,Currents ,Enginyeria de la telecomunicació::Radiocomunicació i exploració electromagnètica::Satèl·lits i ràdioenllaços [Àrees temàtiques de la UPC] ,Fractionation ,Federation ,Polar ,Artificial satellites in telecommunication ,Weather ,SAR - Abstract
© 2018 IEEE. Personal use of this material is permitted. Permission from IEEE must be obtained for all other uses, in any current or future media, including reprinting/republishing this material for advertising or promotional purposes,creating new collective works, for resale or redistribution to servers or lists, or reuse of any copyrighted component of this work in other works. The space industry is currently witnessing two concurrent trends: the increased modularity and miniaturization of technologies and the deployment of constellations of distributed satellite systems. As a consequence of the first trend, the relevance of small satellites in line with the “cheaper and faster” philosophy is increasing. The second one opens up completely new horizons by enabling the design of architectures aimed at improving the performance, reliability, and efficiency of current and future space missions. The EU H2020 ONION project (“Operational Network of Individual Observation Nodes”) has leveraged on the concept of Fractionated and Federated Satellite Systems (FFSS) to develop and design innovative mission architectures resulting in a competitive advantage for European Earth Observation (EO) systems. Starting from the analysis of emerging needs in the European EO market, the solutions to meet these needs are identified and characterized by exploring FFSS. In analogy with terrestrial networks, these systems envision the distribution of satellite functionalities amongst multiple cooperating spacecrafts (nodes of a network), possibly independent, and flying on different orbits. FFSS are considered by many as the future of spacebased infrastructures, as they offer a pragmatic, progressive, and scalable approach to improve existing and future space missions. This work summarizes the main results of the ONION project and the high-level design of the Marine Weather Forecast mission for polar regions.
24. Modeling of quadrotor dynamics for research and training simulator
- Author
-
Przemyslaw Bibik, Narkiewicz, J., Zasuwa, M., and Zugaj, M.
25. Development of an unmanned quadrotor: System and simulator
- Author
-
Przemyslaw Bibik, Narkiewicz, J., Zasuwa, M., Zugaj, M., Górski, T., and Komorniczak, W.
26. Variations in the myocilin gene in patients with open-angle glaucoma
- Author
-
Alward, W. L. M., Kwon, Y. H., Khanna, C. L., Johnson, A. T., Hayreh, S. S., Zimmerman, M. B., Narkiewicz, J., Andorf, J. L., Moore, P. A., John Fingert, Sheffield, V. C., and Stone, E. M.
27. Vitreous amino acid concentrations in patients with glaucoma undergoing vitrectomy
- Author
-
Honkanen, R. A., Baruah, S., Zimmerman, M. B., Khanna, C. L., Weaver, Y. K., Narkiewicz, J., Waziri, R., Gehrs, K. M., Weingeist, T. A., Boldt, H. C., Folk, J. C., Stephen Russell, and Kwon, Y. H.
28. Characterization of the HtrA family of proteins,Charakterystyka białek z rodziny HtrA
- Author
-
Dorota Zurawa-Janicka, Narkiewicz, J., and Lipińska, B.
29. Escherichia coli small heat shock proteins IbpA/B enhance activity of enzymes sequestered in inclusion bodies
- Author
-
Kuczyńska-Wiśnik, D., Zurawa-Janicka, D., Narkiewicz, J., Kwiatkowska, J., Lipińska, B., and Ewa Laskowska
30. Application of a small UAV fleet for demonstration of optimized missions
- Author
-
Narkiewicz, J., Kasprzyk, M., Przemyslaw Bibik, Jarzębowski, M., Jędrzejczyk, F., Polaczek, J., and Wronowski, K.
31. Gradient optimization in elution liquid chromatography
- Author
-
Borówko, M., primary, Jaroniec, M., additional, Narkiewicz, J., additional, and Patrykiejew, A., additional
- Published
- 1978
- Full Text
- View/download PDF
32. Liquid adsorption chromatography with a two-component mobile phase
- Author
-
Jaroniec, M., primary, Klepacka, B., additional, and Narkiewicz, J., additional
- Published
- 1979
- Full Text
- View/download PDF
33. An improved method for evaluating surface heterogeneity for various models of local adsorption
- Author
-
Hsu, C.C, primary, Wojciechowski, B.W, additional, Rudzinski, W, additional, and Narkiewicz, J, additional
- Published
- 1978
- Full Text
- View/download PDF
34. Dependence of the capacity ratio on the composition of the binary mobile phase in liquid—solid adsorption chromatography
- Author
-
Narkiewicz, J., primary, Jaroniec, M., additional, Borówko, M., additional, and Patrykiejew, A., additional
- Published
- 1978
- Full Text
- View/download PDF
35. Critical Properties of Bergmann’s Model for Mobile Monolayer Adsorption
- Author
-
Rudziński, W., primary, Patrykiejew, A., additional, and Narkiewicz, J., additional
- Published
- 1978
- Full Text
- View/download PDF
36. On the theoretical origin of the Haul and Gottwald empirical isotherm for ultrahigh vacuum adsorption
- Author
-
Rudziński, W, primary, Narkiewicz, J, additional, and Patrykiejew, A, additional
- Published
- 1977
- Full Text
- View/download PDF
37. Adsorption of gas mixtures on heterogeneous surfaces: Analysis of experimental data measured at constant mole fractions of components in gas phase
- Author
-
Jaroniec, M, Narkiewicz, J, and Rudziński, W
- Published
- 1978
- Full Text
- View/download PDF
38. Conformational properties of intrinsically disordered proteins bound to the surface of silica nanoparticles
- Author
-
Miriam Colombo, Joanna Narkiewicz, Barbara Colzani, Michele Vitali, Giuseppe Legname, Valentina Rigamonti, Svetlana Avvakumova, Antonino Natalello, Davide Prosperi, Carlo Santambrogio, Rita Grandori, Stefania Brocca, Vitali, M, Rigamonti, V, Natalello, A, Colzani, B, Avvakumova, S, Brocca, S, Santambrogio, C, Narkiewicz, J, Legname, G, Colombo, M, Prosperi, D, and Grandori, R
- Subjects
Circular dichroism ,Saccharomyces cerevisiae Proteins ,Protein Conformation ,Biophysics ,Fourier-transform infrared spectroscopy ,Protein Corona ,Chick Embryo ,02 engineering and technology ,010402 general chemistry ,Intrinsically disordered proteins ,01 natural sciences ,Biochemistry ,Protein structure ,Amyloid aggregation ,Induced folding ,Protein corona ,Structural disorder ,Molecular Biology ,Settore BIO/10 - Biochimica ,Spectroscopy, Fourier Transform Infrared ,Animals ,Humans ,Conformational ensembles ,Conformational isomerism ,Cyclin-Dependent Kinase Inhibitor Proteins ,Chemistry ,Caseins ,Silicon Dioxide ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,Intrinsically Disordered Proteins ,Folding (chemistry) ,Biophysic ,alpha-Synuclein ,Nanoparticles ,Cattle ,Electrophoresis, Polyacrylamide Gel ,Muramidase ,0210 nano-technology ,Protein Binding ,Macromolecule - Abstract
Background Protein-nanoparticle (NP) interactions dictate properties of nanoconjugates relevant to bionanotechnology. Non-covalent adsorption generates a protein corona (PC) formed by an inner and an outer layer, the hard and soft corona (HC, SC). Intrinsically disordered proteins (IDPs) exist in solution as conformational ensembles, whose response to the presence of NPs is not known. Methods Three IDPs (α-casein, Sic1 and α-synuclein) and lysozyme are compared, describing conformational properties inside HC on silica NPs by circular dichroism (CD) and Fourier-transform infrared (FTIR) spectroscopy. Results IDPs inside HC are largely unstructured, but display small, protein-specific conformational changes. A minor increase in helical content is observed for α-casein and α-synuclein, reminiscent of membrane effects on α-synuclein. Frozen in their largely disordered conformation, bound proteins do not undergo folding induced by dehydration, as they do in their free forms. While HC thickness approaches the hydrodynamic diameter of the protein in solution for lysozyme, it is much below the respective values for IDPs. NPs boost α-synuclein aggregation kinetics in a dose-dependent manner. Conclusions IDPs maintain structural disorder inside HC, experiencing minor, protein-specific, induced folding and stabilization against further conformational transitions, such as formation of intermolecular beta-sheets upon dehydration. The HC is formed by a single layer of protein molecules. SC likely plays a key role stabilizing amyloidogenic α-synuclein conformers. General significance Protein-NP interactions can mimic those with macromolecular partners, allowing dissection of contributing factors by rational design of NP surfaces. Application of NPs in vivo should be carefully tested for amyloidogenic potential.
- Published
- 2018
- Full Text
- View/download PDF
39. Methionine oxidation in -synuclein inhibits its propensity for ordered secondary structure
- Author
-
Erika Ponzini, Frank Sobott, Antonino Natalello, Rossana Rossi, Rita Grandori, Antonella De Palma, Lucilla Cerboni, Carlo Santambrogio, Pierluigi Mauri, Giuseppe Legname, Rani Moons, Joanna Narkiewicz, Albert Konijnenberg, Ponzini, E, De Palma, A, Cerboni, L, Natalello, A, Rossi, R, Moons, R, Konijnenberg, A, Narkiewicz, J, Legname, G, Sobott, F, Mauri, P, Santambrogio, C, and Grandori, R
- Subjects
0301 basic medicine ,Protein Folding ,alpha-synuclein (a-synuclein) ,ion mobility (IM) ,medicine.disease_cause ,Biochemistry ,Catechin ,Protein Structure, Secondary ,methionine oxidation ,chemistry.chemical_compound ,Methionine ,neurodegenerative disease ,Settore BIO/10 - Biochimica ,Protein secondary structure ,Dopaminergic ,amyloid ,Molecular Bases of Disease ,Parkinson Disease ,BIO/10 - BIOCHIMICA ,Chemistry ,alpha-Synuclein ,epigallocatechin-3-gallate ,dopamine ,epigallocatechin-3-gallate methionine oxidation ion mobility (IM) amyloid mass spectrometry (MS) dopamine alpha-synuclein (a-synuclein) Fourier transform IR (FTIR) neurodegenerative disease circular dichroism (CD) ,Oxidation-Reduction ,Amyloid ,Kinetics ,FIS/07 - FISICA APPLICATA (A BENI CULTURALI, AMBIENTALI, BIOLOGIA E MEDICINA) ,Fourier transform IR (FTIR) ,circular dichroism (CD) ,mass spectrometry (MS) ,?-synuclein (?-synuclein) ,03 medical and health sciences ,Protein Aggregates ,CHIM/01 - CHIMICA ANALITICA ,In vivo ,medicine ,Humans ,Molecular Biology ,Biology ,030102 biochemistry & molecular biology ,Cell Biology ,In vitro ,Protein Structure, Tertiary ,030104 developmental biology ,chemistry ,Biophysics ,Lewy Bodies ,Oxidative stress - Abstract
alpha-Synuclein (AS) is an intrinsically disordered protein highly expressed in dopaminergic neurons. Its amyloid aggregates are the major component of Lewy bodies, a hallmark of Parkinson's disease (PD). AS is particularly exposed to oxidation of its methionine residues, both in vivo and in vitro. Oxidative stress has been implicated in PD and oxidized -synuclein has been shown to assemble into soluble, toxic oligomers, rather than amyloid fibrils. However, the structural effects of methionine oxidation are still poorly understood. In this work, oxidized AS was obtained by prolonged incubations with dopamine (DA) or epigallocatechin-3-gallate (EGCG), two inhibitors of AS aggregation, indicating that EGCG promotes the same final oxidation product as DA. The conformational transitions of the oxidized and non-oxidized protein were monitored by complementary biophysical techniques, including MS, ion mobility (IM), CD, and FTIR spectroscopy assays. Although the two variants displayed very similar structures under conditions that stabilize highly disordered or highly ordered states, differences emerged in the intermediate points of transitions induced by organic solvents, such as trifluoroethanol (TFE) and methanol (MeOH), indicating a lower propensity of the oxidized protein for forming either - or -type secondary structures. Furthermore, oxidized AS displayed restricted secondary-structure transitions in response to dehydration and slightly amplified tertiary-structure transitions induced by ligand binding. This difference in susceptibility to induced folding could explain the loss of fibrillation potential observed for oxidized AS. Finally, site-specific oxidation kinetics point out a minor delay in Met-127 modification, likely due to the effects of AS intrinsic structure.
- Published
- 2019
- Full Text
- View/download PDF
40. Opposite Structural Effects of Epigallocatechin-3-gallate and Dopamine Binding to α-Synuclein
- Author
-
Giuseppe Legname, Simona Ranica, Frank Sobott, Joanna Narkiewicz, Albert Konijnenberg, Rita Grandori, Antonino Natalello, Konijnenberg, A, Ranica, S, Narkiewicz, J, Legname, G, Grandori, R, Sobott, F, and Natalello, A
- Subjects
0301 basic medicine ,Spectrometry, Mass, Electrospray Ionization ,Stereochemistry ,Dopamine ,green tea ,FIS/07 - FISICA APPLICATA (A BENI CULTURALI, AMBIENTALI, BIOLOGIA E MEDICINA) ,amyloid formation ,dissociation ,ionization mass-spectrometry ,Settore BIO/09 - Fisiologia ,Catechin ,Analytical Chemistry ,03 medical and health sciences ,chemistry.chemical_compound ,CHIM/01 - CHIMICA ANALITICA ,alpha-synuclein, structural effects, Ion-Mobility ,medicine ,Molecule ,Nanotechnology ,Binding site ,oligomers ,intrinsically disordered proteins ,small-molecule inhibitors ,parkinsons-disease ,ligand-binding ,aggregation ,Alpha-synuclein ,Dopamine binding ,Binding Sites ,030102 biochemistry & molecular biology ,Molecular Structure ,Ion-Mobility ,structural effects ,Gallate ,BIO/10 - BIOCHIMICA ,Small molecule ,Electron-transfer dissociation ,Chemistry ,030104 developmental biology ,chemistry ,alpha-Synuclein ,medicine.drug - Abstract
The intrinsically disordered and amyloidogenic protein α-synuclein (AS) has been linked to several neurodegenerative states, including Parkinsons disease. Here, nanoelectrospray-ionization mass spectrometry (nano-ESI-MS), ion mobility (IM), and native top-down electron transfer dissociation (ETD) techniques are employed to study AS interaction with small molecules known to modulate its aggregation, such as epigallocatechin-3-gallate (EGCG) and dopamine (DA). The complexes formed by the two ligands under identical conditions reveal peculiar differences. While EGCG engages AS in compact conformations, DA preferentially binds to the protein in partially extended conformations. The two ligands also have different effects on AS structure as assessed by IM, with EGCG leading to protein compaction and DA to its extension. Native top-down ETD on the proteinligand complexes shows how the different observed modes of binding of the two ligands could be related to their known opposite effects on AS aggregation. The results also show that the protein can bind either ligand in the absence of any covalent modifications, such as oxidation.
- Published
- 2016
41. Improved method for evaluating surface heterogeneity for various models of local adsorption
- Author
-
Narkiewicz, J
- Published
- 1978
- Full Text
- View/download PDF
42. Neuronal haemoglobin induces loss of dopaminergic neurons in mouse Substantia nigra, cognitive deficits and cleavage of endogenous α-synuclein.
- Author
-
Santulli C, Bon C, De Cecco E, Codrich M, Narkiewicz J, Parisse P, Perissinotto F, Santoro C, Persichetti F, Legname G, Espinoza S, and Gustincich S
- Subjects
- Mice, Animals, Dopaminergic Neurons metabolism, Substantia Nigra metabolism, Hemoglobins metabolism, Cognition, alpha-Synuclein genetics, alpha-Synuclein metabolism, Parkinson Disease metabolism
- Abstract
Parkinson's disease (PD) presents the selective loss of A9 dopaminergic (DA) neurons of Substantia Nigra pars compacta (SNpc) and the presence of intracellular aggregates called Lewy bodies. α-synuclein (α-syn) species truncated at the carboxy-terminal (C-terminal) accumulate in pathological inclusions and promote α-syn aggregation and toxicity. Haemoglobin (Hb) is the major oxygen carrier protein in erythrocytes. In addition, Hb is expressed in A9 DA neurons where it influences mitochondrial activity. Hb overexpression increases cells' vulnerability in a neurochemical model of PD in vitro and forms cytoplasmic and nucleolar aggregates upon short-term overexpression in mouse SNpc. In this study, α and β-globin chains were co-expressed in DA cells of SNpc in vivo upon stereotaxic injections of an Adeno-Associated Virus isotype 9 (AAV9) and in DA iMN9D cells in vitro. Long-term Hb over-expression in SNpc induced the loss of about 50% of DA neurons, mild motor impairments, and deficits in recognition and spatial working memory. Hb triggered the formation of endogenous α-syn C-terminal truncated species. Similar α-syn fragments were found in vitro in DA iMN9D cells over-expressing α and β- globins when treated with pre-formed α-syn fibrils. Our study positions Hb as a relevant player in PD pathogenesis for its ability to trigger DA cells' loss in vivo and the formation of C-terminal α-syn fragments., (© 2022. The Author(s).)
- Published
- 2022
- Full Text
- View/download PDF
43. Efficient RT-QuIC seeding activity for α-synuclein in olfactory mucosa samples of patients with Parkinson's disease and multiple system atrophy.
- Author
-
De Luca CMG, Elia AE, Portaleone SM, Cazzaniga FA, Rossi M, Bistaffa E, De Cecco E, Narkiewicz J, Salzano G, Carletta O, Romito L, Devigili G, Soliveri P, Tiraboschi P, Legname G, Tagliavini F, Eleopra R, Giaccone G, and Moda F
- Abstract
Background: Parkinson's disease (PD) is a neurodegenerative disorder whose diagnosis is often challenging because symptoms may overlap with neurodegenerative parkinsonisms. PD is characterized by intraneuronal accumulation of abnormal α-synuclein in brainstem while neurodegenerative parkinsonisms might be associated with accumulation of either α-synuclein, as in the case of Multiple System Atrophy (MSA) or tau, as in the case of Corticobasal Degeneration (CBD) and Progressive Supranuclear Palsy (PSP), in other disease-specific brain regions. Definite diagnosis of all these diseases can be formulated only neuropathologically by detection and localization of α-synuclein or tau aggregates in the brain. Compelling evidence suggests that trace-amount of these proteins can appear in peripheral tissues, including receptor neurons of the olfactory mucosa (OM)., Methods: We have set and standardized the experimental conditions to extend the ultrasensitive Real Time Quaking Induced Conversion (RT-QuIC) assay for OM analysis. In particular, by using human recombinant α-synuclein as substrate of reaction, we have assessed the ability of OM collected from patients with clinical diagnoses of PD and MSA to induce α-synuclein aggregation, and compared their seeding ability to that of OM samples collected from patients with clinical diagnoses of CBD and PSP., Results: Our results showed that a significant percentage of MSA and PD samples induced α-synuclein aggregation with high efficiency, but also few samples of patients with the clinical diagnosis of CBD and PSP caused the same effect. Notably, the final RT-QuIC aggregates obtained from MSA and PD samples owned peculiar biochemical and morphological features potentially enabling their discrimination., Conclusions: Our study provide the proof-of-concept that olfactory mucosa samples collected from patients with PD and MSA possess important seeding activities for α-synuclein. Additional studies are required for (i) estimating sensitivity and specificity of the technique and for (ii) evaluating its application for the diagnosis of PD and neurodegenerative parkinsonisms. RT-QuIC analyses of OM and cerebrospinal fluid (CSF) can be combined with the aim of increasing the overall diagnostic accuracy of these diseases, especially in the early stages., Competing Interests: Competing interestsThe authors declare that they have no competing interests.
- Published
- 2019
- Full Text
- View/download PDF
44. Methionine oxidation in α-synuclein inhibits its propensity for ordered secondary structure.
- Author
-
Ponzini E, De Palma A, Cerboni L, Natalello A, Rossi R, Moons R, Konijnenberg A, Narkiewicz J, Legname G, Sobott F, Mauri P, Santambrogio C, and Grandori R
- Subjects
- Catechin chemistry, Humans, Lewy Bodies metabolism, Lewy Bodies pathology, Methionine metabolism, Oxidation-Reduction, Parkinson Disease metabolism, Parkinson Disease pathology, Protein Structure, Secondary, Protein Structure, Tertiary, alpha-Synuclein metabolism, Catechin analogs & derivatives, Methionine chemistry, Protein Aggregates, Protein Folding, alpha-Synuclein chemistry
- Abstract
α-Synuclein (AS) is an intrinsically disordered protein highly expressed in dopaminergic neurons. Its amyloid aggregates are the major component of Lewy bodies, a hallmark of Parkinson's disease (PD). AS is particularly exposed to oxidation of its methionine residues, both in vivo and in vitro Oxidative stress has been implicated in PD and oxidized α-synuclein has been shown to assemble into soluble, toxic oligomers, rather than amyloid fibrils. However, the structural effects of methionine oxidation are still poorly understood. In this work, oxidized AS was obtained by prolonged incubations with dopamine (DA) or epigallocatechin-3-gallate (EGCG), two inhibitors of AS aggregation, indicating that EGCG promotes the same final oxidation product as DA. The conformational transitions of the oxidized and non-oxidized protein were monitored by complementary biophysical techniques, including MS, ion mobility (IM), CD, and FTIR spectroscopy assays. Although the two variants displayed very similar structures under conditions that stabilize highly disordered or highly ordered states, differences emerged in the intermediate points of transitions induced by organic solvents, such as trifluoroethanol (TFE) and methanol (MeOH), indicating a lower propensity of the oxidized protein for forming either α- or β-type secondary structures. Furthermore, oxidized AS displayed restricted secondary-structure transitions in response to dehydration and slightly amplified tertiary-structure transitions induced by ligand binding. This difference in susceptibility to induced folding could explain the loss of fibrillation potential observed for oxidized AS. Finally, site-specific oxidation kinetics point out a minor delay in Met-127 modification, likely due to the effects of AS intrinsic structure., (© 2019 Ponzini et al.)
- Published
- 2019
- Full Text
- View/download PDF
45. Conformational properties of intrinsically disordered proteins bound to the surface of silica nanoparticles.
- Author
-
Vitali M, Rigamonti V, Natalello A, Colzani B, Avvakumova S, Brocca S, Santambrogio C, Narkiewicz J, Legname G, Colombo M, Prosperi D, and Grandori R
- Subjects
- Animals, Caseins chemistry, Cattle, Chick Embryo, Circular Dichroism, Cyclin-Dependent Kinase Inhibitor Proteins chemistry, Electrophoresis, Polyacrylamide Gel, Humans, Muramidase chemistry, Protein Binding, Saccharomyces cerevisiae Proteins chemistry, Silicon Dioxide, Spectroscopy, Fourier Transform Infrared, alpha-Synuclein chemistry, Intrinsically Disordered Proteins chemistry, Nanoparticles, Protein Conformation, Protein Corona chemistry
- Abstract
Background: Protein-nanoparticle (NP) interactions dictate properties of nanoconjugates relevant to bionanotechnology. Non-covalent adsorption generates a protein corona (PC) formed by an inner and an outer layer, the hard and soft corona (HC, SC). Intrinsically disordered proteins (IDPs) exist in solution as conformational ensembles, whose response to the presence of NPs is not known., Methods: Three IDPs (α-casein, Sic1 and α-synuclein) and lysozyme are compared, describing conformational properties inside HC on silica NPs by circular dichroism (CD) and Fourier-transform infrared (FTIR) spectroscopy., Results: IDPs inside HC are largely unstructured, but display small, protein-specific conformational changes. A minor increase in helical content is observed for α-casein and α-synuclein, reminiscent of membrane effects on α-synuclein. Frozen in their largely disordered conformation, bound proteins do not undergo folding induced by dehydration, as they do in their free forms. While HC thickness approaches the hydrodynamic diameter of the protein in solution for lysozyme, it is much below the respective values for IDPs. NPs boost α-synuclein aggregation kinetics in a dose-dependent manner., Conclusions: IDPs maintain structural disorder inside HC, experiencing minor, protein-specific, induced folding and stabilization against further conformational transitions, such as formation of intermolecular beta-sheets upon dehydration. The HC is formed by a single layer of protein molecules. SC likely plays a key role stabilizing amyloidogenic α-synuclein conformers., General Significance: Protein-NP interactions can mimic those with macromolecular partners, allowing dissection of contributing factors by rational design of NP surfaces. Application of NPs in vivo should be carefully tested for amyloidogenic potential., (Copyright © 2018. Published by Elsevier B.V.)
- Published
- 2018
- Full Text
- View/download PDF
46. α-Synuclein Amyloids Hijack Prion Protein to Gain Cell Entry, Facilitate Cell-to-Cell Spreading and Block Prion Replication.
- Author
-
Aulić S, Masperone L, Narkiewicz J, Isopi E, Bistaffa E, Ambrosetti E, Pastore B, De Cecco E, Scaini D, Zago P, Moda F, Tagliavini F, and Legname G
- Subjects
- Amyloid administration & dosage, Amyloid genetics, Animals, Brain metabolism, Cell Line, Tumor, Creutzfeldt-Jakob Syndrome genetics, Creutzfeldt-Jakob Syndrome pathology, Endopeptidase K chemistry, Gene Expression Regulation, Humans, Injections, Intraventricular, Mice, Mice, Knockout, Neurons pathology, Prion Proteins genetics, Protein Binding, Protein Transport, Recombinant Proteins genetics, Recombinant Proteins metabolism, Signal Transduction, Stereotaxic Techniques, Tyrosine 3-Monooxygenase genetics, Tyrosine 3-Monooxygenase metabolism, alpha-Synuclein genetics, Amyloid metabolism, Brain pathology, Creutzfeldt-Jakob Syndrome metabolism, Neurons metabolism, Prion Proteins metabolism, alpha-Synuclein metabolism
- Abstract
The precise molecular mechanism of how misfolded α-synuclein (α-Syn) accumulates and spreads in synucleinopathies is still unknown. Here, we show the role of the cellular prion protein (PrP
C ) in mediating the uptake and the spread of recombinant α-Syn amyloids. The in vitro data revealed that the presence of PrPC fosters the higher uptake of α-Syn amyloid fibrils, which was also confirmed in vivo in wild type (Prnp+/+ ) compared to PrP knock-out (Prnp-/- ) mice. Additionally, the presence of α-Syn amyloids blocked the replication of scrapie prions (PrPSc ) in vitro and ex vivo, indicating a link between the two proteins. Indeed, whilst PrPC is mediating the internalization of α-Syn amyloids, PrPSc is not able to replicate in their presence. This observation has pathological relevance, since several reported case studies show that the accumulation of α-Syn amyloid deposits in Creutzfeldt-Jakob disease patients is accompanied by a longer disease course.- Published
- 2017
- Full Text
- View/download PDF
47. Opposite Structural Effects of Epigallocatechin-3-gallate and Dopamine Binding to α-Synuclein.
- Author
-
Konijnenberg A, Ranica S, Narkiewicz J, Legname G, Grandori R, Sobott F, and Natalello A
- Subjects
- Binding Sites, Catechin chemistry, Molecular Structure, Nanotechnology, Spectrometry, Mass, Electrospray Ionization, Catechin analogs & derivatives, Dopamine chemistry, alpha-Synuclein chemistry
- Abstract
The intrinsically disordered and amyloidogenic protein α-synuclein (AS) has been linked to several neurodegenerative states, including Parkinson's disease. Here, nanoelectrospray-ionization mass spectrometry (nano-ESI-MS), ion mobility (IM), and native top-down electron transfer dissociation (ETD) techniques are employed to study AS interaction with small molecules known to modulate its aggregation, such as epigallocatechin-3-gallate (EGCG) and dopamine (DA). The complexes formed by the two ligands under identical conditions reveal peculiar differences. While EGCG engages AS in compact conformations, DA preferentially binds to the protein in partially extended conformations. The two ligands also have different effects on AS structure as assessed by IM, with EGCG leading to protein compaction and DA to its extension. Native top-down ETD on the protein-ligand complexes shows how the different observed modes of binding of the two ligands could be related to their known opposite effects on AS aggregation. The results also show that the protein can bind either ligand in the absence of any covalent modifications, such as oxidation.
- Published
- 2016
- Full Text
- View/download PDF
48. Synthetic prions and other human neurodegenerative proteinopathies.
- Author
-
Le NT, Narkiewicz J, Aulić S, Salzano G, Tran HT, Scaini D, Moda F, Giachin G, and Legname G
- Subjects
- Animals, Humans, Neurodegenerative Diseases genetics, Prions chemical synthesis, Prions chemistry, Prions genetics, Protein Folding, Proteins chemistry, Proteins genetics, Neurodegenerative Diseases metabolism, Prions metabolism, Proteins metabolism
- Abstract
Transmissible spongiform encephalopathies (TSE) are a heterogeneous group of neurodegenerative disorders. The common feature of these diseases is the pathological conversion of the normal cellular prion protein (PrP(C)) into a β-structure-rich conformer-termed PrP(Sc). The latter can induce a self-perpetuating process leading to amplification and spreading of pathological protein assemblies. Much evidence suggests that PrP(Sc) itself is able to recruit and misfold PrP(C) into the pathological conformation. Recent data have shown that recombinant PrP(C) can be misfolded in vitro and the resulting synthetic conformers are able to induce the conversion of PrP(C) into PrP(Sc)in vivo. In this review we describe the state-of-the-art of the body of literature in this field. In addition, we describe a cell-based assay to test synthetic prions in cells, providing further evidence that synthetic amyloids are able to template conversion of PrP into prion inclusions. Studying prions might help to understand the pathological mechanisms governing other neurodegenerative diseases. Aggregation and deposition of misfolded proteins is a common feature of several neurodegenerative disorders, such as Alzheimer's disease, Parkinson's disease, amyotrophic lateral sclerosis and other disorders. Although the proteins implicated in each of these diseases differ, they share a common prion mechanism. Recombinant proteins are able to aggregate in vitro into β-rich amyloid fibrils, sharing some features of the aggregates found in the brain. Several studies have reported that intracerebral inoculation of synthetic aggregates lead to unique pathology, which spread progressively to distal brain regions and reduced survival time in animals. Here, we review the prion-like features of different proteins involved in neurodegenerative disorders, such as α-synuclein, superoxide dismutase-1, amyloid-β and tau., (Copyright © 2014 Elsevier B.V. All rights reserved.)
- Published
- 2015
- Full Text
- View/download PDF
49. Prion protein interaction with soil humic substances: environmental implications.
- Author
-
Giachin G, Narkiewicz J, Scaini D, Ngoc AT, Margon A, Sequi P, Leita L, and Legname G
- Subjects
- Adsorption, Animals, Cells, Cultured, Mice, Humic Substances, Prions chemistry
- Abstract
Transmissible spongiform encephalopathies (TSE) are fatal neurodegenerative disorders caused by prions. Animal TSE include scrapie in sheep and goats, and chronic wasting disease (CWD) in cervids. Effective management of scrapie in many parts of the world, and of CWD in North American deer population is complicated by the persistence of prions in the environment. After shedding from diseased animals, prions persist in soil, withstanding biotic and abiotic degradation. As soil is a complex, multi-component system of both mineral and organic components, it is important to understand which soil compounds may interact with prions and thus contribute to disease transmission. Several studies have investigated the role of different soil minerals in prion adsorption and infectivity; we focused our attention on the interaction of soil organic components, the humic substances (HS), with recombinant prion protein (recPrP) material. We evaluated the kinetics of recPrP adsorption, providing a structural and biochemical characterization of chemical adducts using different experimental approaches. Here we show that HS act as potent anti-prion agents in prion infected neuronal cells and in the amyloid seeding assays: HS adsorb both recPrP and prions, thus sequestering them from the prion replication process. We interpreted our findings as highly relevant from an environmental point of view, as the adsorption of prions in HS may affect their availability and consequently hinder the environmental transmission of prion diseases in ruminants.
- Published
- 2014
- Full Text
- View/download PDF
50. In vitro aggregation assays for the characterization of α-synuclein prion-like properties.
- Author
-
Narkiewicz J, Giachin G, and Legname G
- Subjects
- Amino Acid Sequence, In Vitro Techniques, Kinetics, Molecular Sequence Data, alpha-Synuclein chemistry, alpha-Synuclein toxicity, Prions, alpha-Synuclein metabolism
- Abstract
Aggregation of α-synuclein plays a crucial role in the pathogenesis of synucleinopathies, a group of neurodegenerative diseases including Parkinson disease (PD), dementia with Lewy bodies (DLB), diffuse Lewy body disease (DLBD) and multiple system atrophy (MSA). The common feature of these diseases is a pathological deposition of protein aggregates, known as Lewy bodies (LBs) in the central nervous system. The major component of these aggregates is α-synuclein, a natively unfolded protein, which may undergo dramatic structural changes resulting in the formation of β-sheet rich assemblies. In vitro studies have shown that recombinant α-synuclein protein may polymerize into amyloidogenic fibrils resembling those found in LBs. These aggregates may be uptaken and propagated between cells in a prion-like manner. Here we present the mechanisms and kinetics of α-synuclein aggregation in vitro, as well as crucial factors affecting this process. We also describe how PD-linked α-synuclein mutations and some exogenous factors modulate in vitro aggregation. Furthermore, we present a current knowledge on the mechanisms by which extracellular aggregates may be internalized and propagated between cells, as well as the mechanisms of their toxicity.
- Published
- 2014
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.