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1. Fusarium: more than a node or a foot-shaped basal cell.

Author

Crous, PW, Lombard, L, Sandoval-Denis, M, Seifert, KA, Schroers, H-J, Chaverri, P, Gené, J, Guarro, J, Hirooka, Y, Bensch, K, Kema, GHJ, Lamprecht, SC, Cai, L, Rossman, AY, Stadler, M, Summerbell, RC, Taylor, JW, Ploch, S, Visagie, CM, Yilmaz, N, Frisvad, JC, Abdel-Azeem, AM, Abdollahzadeh, J, Abdolrasouli, A, Akulov, A, Alberts, JF, Araújo, JPM, Ariyawansa, HA, Bakhshi, M, Bendiksby, M, Ben Hadj Amor, A, Bezerra, JDP, Boekhout, T, Câmara, MPS, Carbia, M, Cardinali, G, Castañeda-Ruiz, RF, Celis, A, Chaturvedi, V, Collemare, J, Croll, D, Damm, U, Decock, CA, de Vries, RP, Ezekiel, CN, Fan, XL, Fernández, NB, Gaya, E, González, CD, Gramaje, D, Groenewald, JZ, Grube, M, Guevara-Suarez, M, Gupta, VK, Guarnaccia, V, Haddaji, A, Hagen, F, Haelewaters, D, Hansen, K, Hashimoto, A, Hernández-Restrepo, M, Houbraken, J, Hubka, V, Hyde, KD, Iturriaga, T, Jeewon, R, Johnston, PR, Jurjević, Ž, Karalti, I, Korsten, L, Kuramae, EE, Kušan, I, Labuda, R, Lawrence, DP, Lee, HB, Lechat, C, Li, HY, Litovka, YA, Maharachchikumbura, SSN, Marin-Felix, Y, Matio Kemkuignou, B, Matočec, N, McTaggart, AR, Mlčoch, P, Mugnai, L, Nakashima, C, Nilsson, RH, Noumeur, SR, Pavlov, IN, Peralta, MP, Phillips, AJL, Pitt, JI, Polizzi, G, Quaedvlieg, W, Rajeshkumar, KC, Restrepo, S, Rhaiem, A, Robert, J, Robert, V, and Rodrigues, AM

Subjects
Apiognomonia platani (Lév.) L. Lombard, Atractium ciliatum Link, Atractium pallidum Bonord., Calloria tremelloides (Grev.) L. Lombard, Cephalosporium sacchari E.J. Butler, Cosmosporella cavisperma (Corda) Sand.-Den., L. Lombard & Crous, Cylindrodendrum orthosporum (Sacc. & P. Syd.) L. Lombard, Dialonectria volutella (Ellis & Everh.) L. Lombard & Sand.-Den., Fusarium aeruginosum Delacr., Fusarium agaricorum Sarrazin, Fusarium albidoviolaceum Dasz., Fusarium aleyrodis Petch, Fusarium amentorum Lacroix, Fusarium annuum Leonian, Fusarium arcuatum Berk. & M.A. Curtis, Fusarium aridum O.A. Pratt, Fusarium armeniacum (G.A. Forbes et al.) L.W. Burgess & Summerell, Fusarium arthrosporioides Sherb., Fusarium asparagi Delacr., Fusarium batatas Wollenw., Fusarium biforme Sherb., Fusarium buharicum Jacz. ex Babajan & Teterevn.-Babajan, Fusarium cactacearum Pasin. & Buzz.-Trav., Fusarium cacti-maxonii Pasin. & Buzz.-Trav., Fusarium caudatum Wollenw., Fusarium cavispermum Corda, Fusarium cepae Hanzawa, Fusarium cesatii Rabenh., Fusarium citriforme Jamal., Fusarium citrinum Wollenw., Fusarium citrulli Taubenh., Fusarium clavatum Sherb., Fusarium coccinellum Kalchbr., Fusarium cromyophthoron Sideris, Fusarium cucurbitae Taubenh., Fusarium cuneiforme Sherb., Fusarium delacroixii Sacc., Fusarium dimerum var. nectrioides Wollenw., Fusarium echinatum Sand.-Den. & G.J. Marais, Fusarium epicoccum McAlpine, Fusarium eucheliae Sartory, R. Sartory & J. Mey., Fusarium fissum Peyl, Fusarium flocciferum Corda, Fusarium gemmiperda Aderh., Fusarium genevense Dasz., Fusarium graminearum Schwabe, Fusarium graminum Corda, Fusarium heterosporioides Fautrey, Fusarium heterosporum Nees & T. Nees, Fusarium idahoanum O.A. Pratt, Fusarium juruanum Henn., Fusarium lanceolatum O.A. Pratt, Fusarium lateritium Nees, Fusarium loncheceras Sideris, Fusarium longipes Wollenw. & Reinking, Fusarium lyarnte J.L. Walsh, Sangal., L.W. Burgess, E.C.Y. Liew & Summerell, Fusarium malvacearum Taubenh., Fusarium martii f. phaseoli Burkh., Fusarium muentzii Delacr., Fusarium nigrum O.A. Pratt, Fusarium oxysporum var. asclerotium Sherb., Fusarium palczewskii Jacz., Fusarium palustre W.H. Elmer & Marra, Fusarium polymorphum Matr., Fusarium poolense Taubenh., Fusarium prieskaense G.J. Marais & Sand.-Den., Fusarium prunorum McAlpine, Fusarium pusillum Wollenw., Fusarium putrefaciens Osterw., Fusarium redolens Wollenw., Fusarium reticulatum Mont., Fusarium rhizochromatistes Sideris, Fusarium rhizophilum Corda, Fusarium rhodellum McAlpine, Fusarium roesleri Thüm., Fusarium rostratum Appel & Wollenw., Fusarium rubiginosum Appel & Wollenw., Fusarium rubrum Parav., Fusarium samoense Gehrm., Fusarium scirpi Lambotte & Fautrey, Fusarium secalis Jacz., Fusarium spinaciae Hungerf., Fusarium sporotrichioides Sherb., Fusarium stercoris Fuckel, Fusarium stilboides Wollenw., Fusarium stillatum De Not. ex Sacc., Fusarium sublunatum Reinking, Fusarium succisae Schröt. ex Sacc., Fusarium tabacivorum Delacr., Fusarium trichothecioides Wollenw., Fusarium tritici Liebman, Fusarium tuberivorum Wilcox & G.K. Link, Fusarium tumidum var. humi Reinking, Fusarium ustilaginis Kellerm. & Swingle, Fusarium viticola Thüm., Fusarium werrikimbe J.L. Walsh, L.W. Burgess, E.C.Y. Liew & B.A. Summerell, Fusarium willkommii Lindau, Fusarium xylarioides Steyaert, Fusarium zygopetali Delacr., Fusicolla meniscoidea L. Lombard & Sand.-Den., Fusicolla quarantenae J.D.P. Bezerra, Sand.-Den., Crous & Souza-Motta, Fusicolla sporellula Sand.-Den. & L. Lombard, Fusisporium andropogonis Cooke ex Thüm., Fusisporium anthophilum A. Braun, Fusisporium arundinis Corda, Fusisporium avenaceum Fr., Fusisporium clypeaster Corda, Fusisporium culmorum Wm.G. Sm., Fusisporium didymum Harting, Fusisporium elasticae Thüm., Fusisporium episphaericum Cooke & Ellis, Fusisporium flavidum Bonord., Fusisporium hordei Wm.G. Sm., Fusisporium incarnatum Roberge ex Desm., Fusisporium lolii Wm.G. Sm., Fusisporium pandani Corda, Gibberella phyllostachydicola W. Yamam., Hymenella aurea (Corda) L. Lombard, Hymenella spermogoniopsis (Jul. Müll.) L. Lombard & Sand.-Den., Luteonectria Sand.-Den., L. Lombard, Schroers & Rossman, Luteonectria albida (Rossman) Sand.-Den. & L. Lombard, Luteonectria nematophila (Nirenberg & Hagedorn) Sand.-Den. & L. Lombard, Macroconia bulbipes Crous & Sand.-Den., Macroconia phlogioides Sand.-Den. & Crous, Menispora penicillata Harz, Multi-gene phylogeny, Mycotoxins, Nectriaceae, Neocosmospora, Neocosmospora epipeda Quaedvl. & Sand.-Den., Neocosmospora floridana (T. Aoki et al.) L. Lombard & Sand.-Den., Neocosmospora merkxiana Quaedvl. & Sand.-Den., Neocosmospora neerlandica Crous & Sand.-Den., Neocosmospora nelsonii Crous & Sand.-Den., Neocosmospora obliquiseptata (T. Aoki et al.) L. Lombard & Sand.-Den., Neocosmospora pseudopisi Sand.-Den. & L. Lombard, Neocosmospora rekana (Lynn & Marinc.) L. Lombard & Sand.-Den., Neocosmospora tuaranensis (T. Aoki et al.) L. Lombard & Sand.-Den., Nothofusarium Crous, Sand.-Den. & L. Lombard, Nothofusarium devonianum L. Lombard, Crous & Sand.-Den., Novel taxa, Pathogen, Scolecofusarium L. Lombard, Sand.-Den. & Crous, Scolecofusarium ciliatum (Link) L. Lombard, Sand.-Den. & Crous, Selenosporium equiseti Corda, Selenosporium hippocastani Corda, Selenosporium sarcochroum Desm, Selenosporium urticearum Corda., Setofusarium (Nirenberg & Samuels) Crous & Sand.-Den., Setofusarium setosum (Samuels & Nirenberg) Sand.-Den. & Crous., Sphaeria sanguinea var. cicatricum Berk., Sporotrichum poae Peck., Stylonectria corniculata Gräfenhan, Crous & Sand.-Den., Stylonectria hetmanica Akulov, Crous & Sand.-Den., Taxonomy, Mycology & Parasitology, Microbiology
Abstract

Recent publications have argued that there are potentially serious consequences for researchers in recognising distinct genera in the terminal fusarioid clade of the family Nectriaceae. Thus, an alternate hypothesis, namely a very broad concept of the genus Fusarium was proposed. In doing so, however, a significant body of data that supports distinct genera in Nectriaceae based on morphology, biology, and phylogeny is disregarded. A DNA phylogeny based on 19 orthologous protein-coding genes was presented to support a very broad concept of Fusarium at the F1 node in Nectriaceae. Here, we demonstrate that re-analyses of this dataset show that all 19 genes support the F3 node that represents Fusarium sensu stricto as defined by F. sambucinum (sexual morph synonym Gibberella pulicaris). The backbone of the phylogeny is resolved by the concatenated alignment, but only six of the 19 genes fully support the F1 node, representing the broad circumscription of Fusarium. Furthermore, a re-analysis of the concatenated dataset revealed alternate topologies in different phylogenetic algorithms, highlighting the deep divergence and unresolved placement of various Nectriaceae lineages proposed as members of Fusarium. Species of Fusarium s. str. are characterised by Gibberella sexual morphs, asexual morphs with thin- or thick-walled macroconidia that have variously shaped apical and basal cells, and trichothecene mycotoxin production, which separates them from other fusarioid genera. Here we show that the Wollenweber concept of Fusarium presently accounts for 20 segregate genera with clear-cut synapomorphic traits, and that fusarioid macroconidia represent a character that has been gained or lost multiple times throughout Nectriaceae. Thus, the very broad circumscription of Fusarium is blurry and without apparent synapomorphies, and does not include all genera with fusarium-like macroconidia, which are spread throughout Nectriaceae (e.g., Cosmosporella, Macroconia, Microcera). In this study four new genera are introduced, along with 18 new species and 16 new combinations. These names convey information about relationships, morphology, and ecological preference that would otherwise be lost in a broader definition of Fusarium. To assist users to correctly identify fusarioid genera and species, we introduce a new online identification database, Fusarioid-ID, accessible at www.fusarium.org. The database comprises partial sequences from multiple genes commonly used to identify fusarioid taxa (act1, CaM, his3, rpb1, rpb2, tef1, tub2, ITS, and LSU). In this paper, we also present a nomenclator of names that have been introduced in Fusarium up to January 2021 as well as their current status, types, and diagnostic DNA barcode data. In this study, researchers from 46 countries, representing taxonomists, plant pathologists, medical mycologists, quarantine officials, regulatory agencies, and students, strongly support the application and use of a more precisely delimited Fusarium (= Gibberella) concept to accommodate taxa from the robust monophyletic node F3 on the basis of a well-defined and unique combination of morphological and biochemical features. This F3 node includes, among others, species of the F. fujikuroi, F. incarnatum-equiseti, F. oxysporum, and F. sambucinum species complexes, but not species of Bisifusarium [F. dimerum species complex (SC)], Cyanonectria (F. buxicola SC), Geejayessia (F. staphyleae SC), Neocosmospora (F. solani SC) or Rectifusarium (F. ventricosum SC). The present study represents the first step to generating a new online monograph of Fusarium and allied fusarioid genera (www.fusarium.org).

Published
2021

3. Species diversity in Pseudocercospora

Author

Groenewald, J.Z., Chen, Y.Y., Zhang, Y., Roux, J., Shin, H.-D., Shivas, R.G., Summerell, B.A., Braun, U., Alfenas, A.C., Ujat, A.H., Nakashima, C., Crous, P.W., Groenewald, J.Z., Chen, Y.Y., Zhang, Y., Roux, J., Shin, H.-D., Shivas, R.G., Summerell, B.A., Braun, U., Alfenas, A.C., Ujat, A.H., Nakashima, C., and Crous, P.W.

Abstract

Species of Pseudocercospora are commonly associated with leaf and fruit spots on diverse plant hosts in sub-tropical and tropical regions. Pseudocercospora spp. have mycosphaerella-like sexual morphs, but represent a distinct genus in Mycosphaerellaceae (Mycosphaerellales, Dothideomycetes). The present study adds a further 29 novel species of Pseudocercospora from 413 host species representing 297 host genera occurring in 60 countries and designates four epitypes and one lectotype for established names. This study recognises 329 species names, with an additional 69 phylogenetic lineages remaining unnamed due to difficulty in being able to unambiguously apply existing names to those lineages. To help elucidate the taxonomy of these species, a phylogenetic tree was generated from multi-locus DNA sequence data of the internal transcribed spacers and intervening 5.8S nuclear nrRNA gene (ITS), partial actin (actA), and partial translation elongation factor 1-alpha (tef1), as well as the partial DNA-directed RNA polymerase II second largest subunit (rpb2) gene sequences. Novel species described in this study include those from various countries as follows: Australia, Ps. acaciicola from leaf spots on Acacia sp., Ps. anopter from leaf spots on Anopterus glandulosus, Ps. asplenii from leaf spots on Asplenium dimorphum, Ps. australiensis from leaf spots on Eucalyptus gunnii, Ps. badjensis from leaf spots on Eucalyptus badjensis, Ps. erythrophloeicola from leaf spots on Erythrophleum chlorostachys, Ps. grevilleae from leaf spots on Grevillea sp., Ps. lophostemonigena from leaf spots on Lophostemon confertus, Ps. lophostemonis from leaf spots on Lophostemon lactifluus, Ps. paramacadamiae from leaf spots on Macadamia integrifolia, Ps. persooniae from leaf spots on Persoonia sp., Ps. pultenaeae from leaf spots on Pultenaea daphnoides, Ps. tristaniopsidis from leaf spots on Tristaniopsis collina, Ps. victoriae from leaf spots on Eucalyptus globoidea. Brazil, Ps. musigena from lea

Published
2024

4. Species diversity in Pseudocercospora.

Author

Groenewald, J. Z., Chen, Y. Y., Zhang, Y., Roux, J., Shin, H.-D., Shivas, R. G., Summerell, B. A., Braun, U., Alfenas, A. C., Ujat, A. H., Nakashima, C., and Crous, P. W.

Subjects
PSEUDOCERCOSPORELLA, SPECIES diversity, HOST plants, TAXONOMY, PHYTOPATHOGENIC fungi
Abstract

Species of Pseudocercospora are commonly associated with leaf and fruit spots on diverse plant hosts in sub-tropical and tropical regions. Pseudocercospora spp. have mycosphaerella-like sexual morphs, but represent a distinct genus in Mycosphaerellaceae (Mycosphaerellales, Dothideomycetes). The present study adds a further 29 novel species of Pseudocercospora from 413 host species representing 297 host genera occurring in 60 countries and designates four epitypes and one lectotype for established names. This study recognises 329 species names, with an additional 69 phylogenetic lineages remaining unnamed due to difficulty in being able to unambiguously apply existing names to those lineages. To help elucidate the taxonomy of these species, a phylogenetic tree was generated from multi-locus DNA sequence data of the internal transcribed spacers and intervening 5.8S nuclear nrRNA gene (ITS), partial actin (actA), and partial translation elongation factor 1-alpha (tef1), as well as the partial DNA-directed RNA polymerase II second largest subunit (rpb2) gene sequences. Novel species described in this study include those from various countries as follows: Australia, Ps. acaciicola from leaf spots on Acacia sp., Ps. anopter from leaf spots on Anopterus glandulosus, Ps. asplenii from leaf spots on Asplenium dimorphum, Ps. australiensis from leaf spots on Eucalyptus gunnii, Ps. badjensis from leaf spots on Eucalyptus badjensis, Ps. erythrophloeicola from leaf spots on Erythrophleum chlorostachys, Ps. grevilleae from leaf spots on Grevillea sp., Ps. lophostemonigena from leaf spots on Lophostemon confertus, Ps. lophostemonis from leaf spots on Lophostemon lactifluus, Ps. paramacadamiae from leaf spots on Macadamia integrifolia, Ps. persooniae from leaf spots on Persoonia sp., Ps. pultenaeae from leaf spots on Pultenaea daphnoides, Ps. tristaniopsidis from leaf spots on Tristaniopsis collina, Ps. victoriae from leaf spots on Eucalyptus globoidea. Brazil, Ps. musigena from leaf spots on Musa sp. China, Ps. lonicerae-japonicae from leaf spots on Lonicera japonica, Ps. rubigena leaf spots on Rubus sp. France (Réunion), Ps. wingfieldii from leaf spots on Acacia heterophylla. Malaysia, Ps. musarum from leaf spots on Musa sp. Netherlands, Ps. rhododendri from leaf spots on Rhododendron sp. South Africa, Ps. balanitis from leaf spots on Balanites sp., Ps. dovyalidicola from leaf spots on Dovyalis zeyheri, Ps. encephalarticola from leaf spots on Encephalartos sp. South Korea, Ps. grewiana from leaf spots on Grewia biloba, Ps. parakaki from leaf spots on Diospyros kaki, Ps. pseudocydoniae from leaf spots on Chaenomeles lagenaria, Ps. paracydoniae from leaf spots on Chaenomeles speciosa. Thailand, Ps. acerigena from leaf spots on Acer sp., Ps. tectonigena from leaf spots on Tectona grandis. Epitypes are designated for Cercospora bonjeaneae-rectae, Cercospora halleriae, Ps. eucleae, and an epitype as well as a lectotype for Ps. macadamiae. Results obtained in the present study contribute to a better understanding of the host specificity and distribution in Pseudocercospora spp., many of which represent important pathogens of food or fibre crops, or organisms of quarantine concern. [ABSTRACT FROM AUTHOR]

Published
2024
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10. Genera of phytopathogenic fungi: GOPHY 4

Author

Chen, Q., Bakhshi, M., Balci, Y., Broders, K.d., Cheewangkoon, R., Chen, S.f., Fan, X.l., Gramaje, D., Halleen, F., Horta jung, M., Jiang, N., Jung, T., Májek, T., Marincowitz, S., Milenković, I., Mostert, L., Nakashima, C., Nurul faziha, I., Pan, M., Raza, M., Scanu, B., Spies, C.f.j., Suhaizan, L., Suzuki, H., Tian, C.m., Tomšovský, M., Úrbez-Torres, J.r., Wang, W., Wingfield, B.d., Wingfield, M.j., Yang, Q., Yang, X., Zare, R., Zhao, P., Groenewald, J.z., Cai, L., Crous, P.w., Molecular Microbiology, Sub Molecular Microbiology, Westerdijk Fungal Biodiversity Institute - Evolutionary Phytopathology, Westerdijk Fungal Biodiversity Institute, Molecular Microbiology, Sub Molecular Microbiology, National Natural Science Foundation of China, European Commission, National Key Research and Development Program (China), Iranian National Science Foundation, Agricultural Research, Education and Extension Organization (Iran), and Japan Society for the Promotion of Science

Subjects
New taxa, Typifications, TYPIFICATIONS, Fungal systematics, NEW TAXA, Laboratory of Phytopathology, DNA barcodes, Life Science, FUNGAL SYSTEMATICS, DNA BARCODES, Agricultural and Biological Sciences (miscellaneous), Laboratorium voor Phytopathologie
Abstract

This paper is the fourth contribution in the Genera of Phytopathogenic Fungi (GOPHY) series. The series provides morphological descriptions and information about the pathology, distribution, hosts and disease symptoms, as well as DNA barcodes for the taxa covered. Moreover, 12 whole-genome sequences for the type or new species in the treated genera are provided. The fourth paper in the GOPHY series covers 19 genera of phytopathogenic fungi and their relatives, including Ascochyta, Cadophora, Celoporthe, Cercospora, Coleophoma, Cytospora, Dendrostoma, Didymella, Endothia, Heterophaeomoniella, Leptosphaerulina, Melampsora, Nigrospora, Pezicula, Phaeomoniella, Pseudocercospora, Pteridopassalora, Zymoseptoria, and one genus of oomycetes, Phytophthora. This study includes two new genera, 30 new species, five new combinations, and 43 typifications of older names., The study of Ascochyta, Didymella and Leptosphaerulina were supported by the National Natural Science Foundation of China (31750001) and the National Science and Technology Fundamental Resources Investigation Program of China (MOST: 2021FY100900). The study of the genus Phytophthora was supported by the Project Phytophthora Research Centre Reg. No. CZ.02.1.01/0.0/0.0/15_003/000 0453 cofinanced by the European Regional Development Fund. ShuaiFei Chen acknowledges the National Key R&D Program of China (ChinaSouth Africa Forestry Joint Research Centre Project; 2018YFE0120900) for financial support. Mounes Bakhshi and Rasoul Zare gratefully acknowledge the Iran National Science Foundation (INSF), and Research Deputy of the Iranian Research Institute of Plant Protection, Agricultural Research, Education and Extension Organization (AREEO), for financial support. The study of the genera Pseudocercospora and Pteridopassalora were partially supported by JSPS KAKENHI Grant Numbers JP20K06146 to Chiharu Nakashima.

Published
2022

12. Genera of phytopathogenic fungi: GOPHY 4

Author

Molecular Microbiology, Sub Molecular Microbiology, Chen, Q., Bakhshi, M., Balci, Y., Broders, K.d., Cheewangkoon, R., Chen, S.f., Fan, X.l., Gramaje, D., Halleen, F., Horta jung, M., Jiang, N., Jung, T., Májek, T., Marincowitz, S., Milenković, I., Mostert, L., Nakashima, C., Nurul faziha, I., Pan, M., Raza, M., Scanu, B., Spies, C.f.j., Suhaizan, L., Suzuki, H., Tian, C.m., Tomšovský, M., Úrbez-Torres, J.r., Wang, W., Wingfield, B.d., Wingfield, M.j., Yang, Q., Yang, X., Zare, R., Zhao, P., Groenewald, J.z., Cai, L., Crous, P.w., Molecular Microbiology, Sub Molecular Microbiology, Chen, Q., Bakhshi, M., Balci, Y., Broders, K.d., Cheewangkoon, R., Chen, S.f., Fan, X.l., Gramaje, D., Halleen, F., Horta jung, M., Jiang, N., Jung, T., Májek, T., Marincowitz, S., Milenković, I., Mostert, L., Nakashima, C., Nurul faziha, I., Pan, M., Raza, M., Scanu, B., Spies, C.f.j., Suhaizan, L., Suzuki, H., Tian, C.m., Tomšovský, M., Úrbez-Torres, J.r., Wang, W., Wingfield, B.d., Wingfield, M.j., Yang, Q., Yang, X., Zare, R., Zhao, P., Groenewald, J.z., Cai, L., and Crous, P.w.

Published
2022

14. Fusarium: more than a node or a foot-shaped basal cell

Author

Crous, P. W., Lombard, L., Sandoval-Denis, M., Seifert, K. A., Schroers, H. J., Chaverri, P., Gené, J., Guarro, J., Hirooka, Y., Bensch, K., Kema, G. H.J., Lamprecht, S. C., Cai, L., Rossman, A. Y., Stadler, M., Summerbell, R. C., Taylor, J. W., Ploch, S., Visagie, C. M., Yilmaz, N., Frisvad, J. C., Abdel-Azeem, A. M., Abdollahzadeh, J., Abdolrasouli, A., Akulov, A., Alberts, J. F., Araújo, J. P.M., Ariyawansa, H. A., Bakhshi, M., Bendiksby, M., Ben Hadj Amor, A., Bezerra, J. D.P., Boekhout, T., Câmara, M. P.S., Carbia, M., Cardinali, G., Castañeda-Ruiz, R. F., Celis, A., Chaturvedi, V., Collemare, J., Croll, D., Damm, U., Decock, C. A., de Vries, R. P., Ezekiel, C. N., Fan, X. L., Fernández, N. B., Gaya, E., González, C. D., Gramaje, D., Groenewald, J. Z., Grube, M., Guevara-Suarez, M., Gupta, V. K., Guarnaccia, V., Haddaji, A., Hagen, F., Haelewaters, D., Hansen, K., Hashimoto, A., Hernández-Restrepo, M., Houbraken, J., Hubka, V., Hyde, K. D., Iturriaga, T., Jeewon, R., Johnston, P. R., Jurjević, Karalti, Korsten, L., Kuramae, E. E., Kušan, I., Labuda, R., Lawrence, D. P., Lee, H. B., Lechat, C., Li, H. Y., Litovka, Y. A., Maharachchikumbura, S. S.N., Marin-Felix, Y., Matio Kemkuignou, B., Matočec, N., McTaggart, A. R., Mlčoch, P., Mugnai, L., Nakashima, C., Nilsson, R. H., Noumeur, S. R., Pavlov, I. N., Peralta, M. P., Phillips, A. J.L., Pitt, J. I., Polizzi, G., Quaedvlieg, W., Rajeshkumar, K. C., Restrepo, S., Rhaiem, A., Robert, J., Robert, V., Rodrigues, A. M., Salgado-Salazar, C., Samson, R. A., Santos, A. C.S., Shivas, R. G., Souza-Motta, C. M., Sun, G. Y., Swart, W. J., Szoke, S., Tan, Y. P., Taylor, J. E., Taylor, P. W.J., Tiago, P. V., Váczy, K. Z., van de Wiele, N., van der Merwe, N. A., Verkley, G. J.M., Vieira, W. A.S., Vizzini, A., Weir, B. S., Wijayawardene, N. N., Xia, J. W., Yáñez-Morales, M. J., Yurkov, A., Zamora, J. C., Zare, R., Zhang, C. L., Thines, M., Crous, P. W., Lombard, L., Sandoval-Denis, M., Seifert, K. A., Schroers, H. J., Chaverri, P., Gené, J., Guarro, J., Hirooka, Y., Bensch, K., Kema, G. H.J., Lamprecht, S. C., Cai, L., Rossman, A. Y., Stadler, M., Summerbell, R. C., Taylor, J. W., Ploch, S., Visagie, C. M., Yilmaz, N., Frisvad, J. C., Abdel-Azeem, A. M., Abdollahzadeh, J., Abdolrasouli, A., Akulov, A., Alberts, J. F., Araújo, J. P.M., Ariyawansa, H. A., Bakhshi, M., Bendiksby, M., Ben Hadj Amor, A., Bezerra, J. D.P., Boekhout, T., Câmara, M. P.S., Carbia, M., Cardinali, G., Castañeda-Ruiz, R. F., Celis, A., Chaturvedi, V., Collemare, J., Croll, D., Damm, U., Decock, C. A., de Vries, R. P., Ezekiel, C. N., Fan, X. L., Fernández, N. B., Gaya, E., González, C. D., Gramaje, D., Groenewald, J. Z., Grube, M., Guevara-Suarez, M., Gupta, V. K., Guarnaccia, V., Haddaji, A., Hagen, F., Haelewaters, D., Hansen, K., Hashimoto, A., Hernández-Restrepo, M., Houbraken, J., Hubka, V., Hyde, K. D., Iturriaga, T., Jeewon, R., Johnston, P. R., Jurjević, Karalti, Korsten, L., Kuramae, E. E., Kušan, I., Labuda, R., Lawrence, D. P., Lee, H. B., Lechat, C., Li, H. Y., Litovka, Y. A., Maharachchikumbura, S. S.N., Marin-Felix, Y., Matio Kemkuignou, B., Matočec, N., McTaggart, A. R., Mlčoch, P., Mugnai, L., Nakashima, C., Nilsson, R. H., Noumeur, S. R., Pavlov, I. N., Peralta, M. P., Phillips, A. J.L., Pitt, J. I., Polizzi, G., Quaedvlieg, W., Rajeshkumar, K. C., Restrepo, S., Rhaiem, A., Robert, J., Robert, V., Rodrigues, A. M., Salgado-Salazar, C., Samson, R. A., Santos, A. C.S., Shivas, R. G., Souza-Motta, C. M., Sun, G. Y., Swart, W. J., Szoke, S., Tan, Y. P., Taylor, J. E., Taylor, P. W.J., Tiago, P. V., Váczy, K. Z., van de Wiele, N., van der Merwe, N. A., Verkley, G. J.M., Vieira, W. A.S., Vizzini, A., Weir, B. S., Wijayawardene, N. N., Xia, J. W., Yáñez-Morales, M. J., Yurkov, A., Zamora, J. C., Zare, R., Zhang, C. L., and Thines, M.

Abstract

Recent publications have argued that there are potentially serious consequences for researchers in recognising distinct genera in the terminal fusarioid clade of the family Nectriaceae. Thus, an alternate hypothesis, namely a very broad concept of the genus Fusarium was proposed. In doing so, however, a significant body of data that supports distinct genera in Nectriaceae based on morphology, biology, and phylogeny is disregarded. A DNA phylogeny based on 19 orthologous protein-coding genes was presented to support a very broad concept of Fusarium at the F1 node in Nectriaceae. Here, we demonstrate that re-analyses of this dataset show that all 19 genes support the F3 node that represents Fusarium sensu stricto as defined by F. sambucinum (sexual morph synonym Gibberella pulicaris). The backbone of the phylogeny is resolved by the concatenated alignment, but only six of the 19 genes fully support the F1 node, representing the broad circumscription of Fusarium. Furthermore, a re-analysis of the concatenated dataset revealed alternate topologies in different phylogenetic algorithms, highlighting the deep divergence and unresolved placement of various Nectriaceae lineages proposed as members of Fusarium. Species of Fusarium s. str. are characterised by Gibberella sexual morphs, asexual morphs with thin- or thick-walled macroconidia that have variously shaped apical and basal cells, and trichothecene mycotoxin production, which separates them from other fusarioid genera. Here we show that the Wollenweber concept of Fusarium presently accounts for 20 segregate genera with clear-cut synapomorphic traits, and that fusarioid macroconidia represent a character that has been gained or lost multiple times throughout Nectriaceae. Thus, the very broad circumscription of Fusarium is blurry and without apparent synapomorphies, and does not include all genera with fusarium-like macroconidia, which are spread throughout Nectriaceae (e.g., Cosmosporella, Macroconia, Microcera). In

Published
2021

15. Fusarium: more than a node or a foot-shaped basal cell

Author

Sub Molecular Microbiology, Sub Molecular Plant Physiology, Sub Ecology and Biodiversity, Molecular Microbiology, Molecular Plant Physiology, Ecology and Biodiversity, Crous, P. W., Lombard, L., Sandoval-Denis, M., Seifert, K. A., Schroers, H. J., Chaverri, P., Gené, J., Guarro, J., Hirooka, Y., Bensch, K., Kema, G. H.J., Lamprecht, S. C., Cai, L., Rossman, A. Y., Stadler, M., Summerbell, R. C., Taylor, J. W., Ploch, S., Visagie, C. M., Yilmaz, N., Frisvad, J. C., Abdel-Azeem, A. M., Abdollahzadeh, J., Abdolrasouli, A., Akulov, A., Alberts, J. F., Araújo, J. P.M., Ariyawansa, H. A., Bakhshi, M., Bendiksby, M., Ben Hadj Amor, A., Bezerra, J. D.P., Boekhout, T., Câmara, M. P.S., Carbia, M., Cardinali, G., Castañeda-Ruiz, R. F., Celis, A., Chaturvedi, V., Collemare, J., Croll, D., Damm, U., Decock, C. A., de Vries, R. P., Ezekiel, C. N., Fan, X. L., Fernández, N. B., Gaya, E., González, C. D., Gramaje, D., Groenewald, J. Z., Grube, M., Guevara-Suarez, M., Gupta, V. K., Guarnaccia, V., Haddaji, A., Hagen, F., Haelewaters, D., Hansen, K., Hashimoto, A., Hernández-Restrepo, M., Houbraken, J., Hubka, V., Hyde, K. D., Iturriaga, T., Jeewon, R., Johnston, P. R., Jurjević, Karalti, Korsten, L., Kuramae, E. E., Kušan, I., Labuda, R., Lawrence, D. P., Lee, H. B., Lechat, C., Li, H. Y., Litovka, Y. A., Maharachchikumbura, S. S.N., Marin-Felix, Y., Matio Kemkuignou, B., Matočec, N., McTaggart, A. R., Mlčoch, P., Mugnai, L., Nakashima, C., Nilsson, R. H., Noumeur, S. R., Pavlov, I. N., Peralta, M. P., Phillips, A. J.L., Pitt, J. I., Polizzi, G., Quaedvlieg, W., Rajeshkumar, K. C., Restrepo, S., Rhaiem, A., Robert, J., Robert, V., Rodrigues, A. M., Salgado-Salazar, C., Samson, R. A., Santos, A. C.S., Shivas, R. G., Souza-Motta, C. M., Sun, G. Y., Swart, W. J., Szoke, S., Tan, Y. P., Taylor, J. E., Taylor, P. W.J., Tiago, P. V., Váczy, K. Z., van de Wiele, N., van der Merwe, N. A., Verkley, G. J.M., Vieira, W. A.S., Vizzini, A., Weir, B. S., Wijayawardene, N. N., Xia, J. W., Yáñez-Morales, M. J., Yurkov, A., Zamora, J. C., Zare, R., Zhang, C. L., Thines, M., Sub Molecular Microbiology, Sub Molecular Plant Physiology, Sub Ecology and Biodiversity, Molecular Microbiology, Molecular Plant Physiology, Ecology and Biodiversity, Crous, P. W., Lombard, L., Sandoval-Denis, M., Seifert, K. A., Schroers, H. J., Chaverri, P., Gené, J., Guarro, J., Hirooka, Y., Bensch, K., Kema, G. H.J., Lamprecht, S. C., Cai, L., Rossman, A. Y., Stadler, M., Summerbell, R. C., Taylor, J. W., Ploch, S., Visagie, C. M., Yilmaz, N., Frisvad, J. C., Abdel-Azeem, A. M., Abdollahzadeh, J., Abdolrasouli, A., Akulov, A., Alberts, J. F., Araújo, J. P.M., Ariyawansa, H. A., Bakhshi, M., Bendiksby, M., Ben Hadj Amor, A., Bezerra, J. D.P., Boekhout, T., Câmara, M. P.S., Carbia, M., Cardinali, G., Castañeda-Ruiz, R. F., Celis, A., Chaturvedi, V., Collemare, J., Croll, D., Damm, U., Decock, C. A., de Vries, R. P., Ezekiel, C. N., Fan, X. L., Fernández, N. B., Gaya, E., González, C. D., Gramaje, D., Groenewald, J. Z., Grube, M., Guevara-Suarez, M., Gupta, V. K., Guarnaccia, V., Haddaji, A., Hagen, F., Haelewaters, D., Hansen, K., Hashimoto, A., Hernández-Restrepo, M., Houbraken, J., Hubka, V., Hyde, K. D., Iturriaga, T., Jeewon, R., Johnston, P. R., Jurjević, Karalti, Korsten, L., Kuramae, E. E., Kušan, I., Labuda, R., Lawrence, D. P., Lee, H. B., Lechat, C., Li, H. Y., Litovka, Y. A., Maharachchikumbura, S. S.N., Marin-Felix, Y., Matio Kemkuignou, B., Matočec, N., McTaggart, A. R., Mlčoch, P., Mugnai, L., Nakashima, C., Nilsson, R. H., Noumeur, S. R., Pavlov, I. N., Peralta, M. P., Phillips, A. J.L., Pitt, J. I., Polizzi, G., Quaedvlieg, W., Rajeshkumar, K. C., Restrepo, S., Rhaiem, A., Robert, J., Robert, V., Rodrigues, A. M., Salgado-Salazar, C., Samson, R. A., Santos, A. C.S., Shivas, R. G., Souza-Motta, C. M., Sun, G. Y., Swart, W. J., Szoke, S., Tan, Y. P., Taylor, J. E., Taylor, P. W.J., Tiago, P. V., Váczy, K. Z., van de Wiele, N., van der Merwe, N. A., Verkley, G. J.M., Vieira, W. A.S., Vizzini, A., Weir, B. S., Wijayawardene, N. N., Xia, J. W., Yáñez-Morales, M. J., Yurkov, A., Zamora, J. C., Zare, R., Zhang, C. L., and Thines, M.

Published
2021

16. Fusarium: more than a node or a foot-shaped basal cell

Author

Crous, P.W., Lombard, L., Sandoval-Denis, M., Seifert, K.A., Schroers, H.-J., Chaverri, P., Gené, J., Guarro, J., Hirooka, Y., Bensch, K., Kema, G.H.J., Lamprecht, S.C., Cai, L., Rossman, A.Y., Stadler, M., Summerbell, R.C., Taylor, J.W., Ploch, S., Visagie, C.M., Yilmaz, N., Frisvad, J.C., Abdel-Azeem, A.M., Abdollahzadeh, J., Abdolrasouli, A., Akulov, A., Alberts, J.F., Araújo, J.P.M., Ariyawansa, H.A., Bakhshi, M., Bendiksby, M., Amor, A. Ben Hadj, Bezerra, J.D.P., Boekhout, T., Câmara, M.P.S., Carbia, M., Cardinali, G., Castañeda-Ruiz, R.F., Celis, A., Chaturvedi, V., Collemare, J., Croll, D., Damm, U., Decock, C.A., Vries, R.P. de, Ezekiel, C.N., Fan, X.L., Fernández, N.B., Gaya, E., González, C.D., Gramaje, D., Groenewald, J.Z., Grube, M., Guevara-Suarez, M., Gupta, V.K., Guarnaccia, V., Haddaji, A., Hagen, F., Haelewaters, D., Hansen, K., Hashimoto, A., Hernández-Restrepo, M., Houbraken, J., Hubka, V., Hyde, K.D., Iturriaga, T., Jeewon, R., Johnston, P.R., Jurjević, Ž., Karalti, İ., Korsten, L., Kuramae, E.E., Kušan, I., Labuda, R., Lawrence, D.P., Lee, H.B., Lechat, C., Li, H.Y., Litovka, Y.A., Maharachchikumbura, S.S.N., Marin-Felix, Y., Kemkuignou, B. Matio, Matočec, N., McTaggart, A.R., Mlčoch, P., Mugnai, L., Nakashima, C., Nilsson, R.H., Noumeur, S.R., Pavlov, I.N., Peralta, M.P., Phillips, A.J.L., Pitt, J.I., Polizzi, G., Quaedvlieg, W., Rajeshkumar, K.C., Restrepo, S., Rhaiem, A., Robert, J., Robert, V., Rodrigues, A.M., Salgado-Salazar, C., Samson, R.A., Santos, A.C.S., Shivas, R.G., Souza-Motta, C.M., Sun, G.Y., Swart, W.J., Szoke, S., Tan, Y.P., Taylor, J.E., Taylor, P.W.J., Tiago, P.V., Váczy, K.Z., Wiele, N. van de, Merwe, N.A. van der, Verkley, G.J.M., Vieira, W.A.S., Vizzini, A., Weir, B.S., Wijayawardene, N.N., Xia, J.W., Yáñez-Morales, M.J., Yurkov, A., Zamora, J.C., Zare, R., Zhang, C.L., Thines, M., Crous, P.W., Lombard, L., Sandoval-Denis, M., Seifert, K.A., Schroers, H.-J., Chaverri, P., Gené, J., Guarro, J., Hirooka, Y., Bensch, K., Kema, G.H.J., Lamprecht, S.C., Cai, L., Rossman, A.Y., Stadler, M., Summerbell, R.C., Taylor, J.W., Ploch, S., Visagie, C.M., Yilmaz, N., Frisvad, J.C., Abdel-Azeem, A.M., Abdollahzadeh, J., Abdolrasouli, A., Akulov, A., Alberts, J.F., Araújo, J.P.M., Ariyawansa, H.A., Bakhshi, M., Bendiksby, M., Amor, A. Ben Hadj, Bezerra, J.D.P., Boekhout, T., Câmara, M.P.S., Carbia, M., Cardinali, G., Castañeda-Ruiz, R.F., Celis, A., Chaturvedi, V., Collemare, J., Croll, D., Damm, U., Decock, C.A., Vries, R.P. de, Ezekiel, C.N., Fan, X.L., Fernández, N.B., Gaya, E., González, C.D., Gramaje, D., Groenewald, J.Z., Grube, M., Guevara-Suarez, M., Gupta, V.K., Guarnaccia, V., Haddaji, A., Hagen, F., Haelewaters, D., Hansen, K., Hashimoto, A., Hernández-Restrepo, M., Houbraken, J., Hubka, V., Hyde, K.D., Iturriaga, T., Jeewon, R., Johnston, P.R., Jurjević, Ž., Karalti, İ., Korsten, L., Kuramae, E.E., Kušan, I., Labuda, R., Lawrence, D.P., Lee, H.B., Lechat, C., Li, H.Y., Litovka, Y.A., Maharachchikumbura, S.S.N., Marin-Felix, Y., Kemkuignou, B. Matio, Matočec, N., McTaggart, A.R., Mlčoch, P., Mugnai, L., Nakashima, C., Nilsson, R.H., Noumeur, S.R., Pavlov, I.N., Peralta, M.P., Phillips, A.J.L., Pitt, J.I., Polizzi, G., Quaedvlieg, W., Rajeshkumar, K.C., Restrepo, S., Rhaiem, A., Robert, J., Robert, V., Rodrigues, A.M., Salgado-Salazar, C., Samson, R.A., Santos, A.C.S., Shivas, R.G., Souza-Motta, C.M., Sun, G.Y., Swart, W.J., Szoke, S., Tan, Y.P., Taylor, J.E., Taylor, P.W.J., Tiago, P.V., Váczy, K.Z., Wiele, N. van de, Merwe, N.A. van der, Verkley, G.J.M., Vieira, W.A.S., Vizzini, A., Weir, B.S., Wijayawardene, N.N., Xia, J.W., Yáñez-Morales, M.J., Yurkov, A., Zamora, J.C., Zare, R., Zhang, C.L., and Thines, M.

Abstract

Recent publications have argued that there are potentially serious consequences for researchers in recognising distinct genera in the terminal fusarioid clade of the family Nectriaceae. Thus, an alternate hypothesis, namely a very broad concept of the genus Fusarium was proposed. In doing so, however, a significant body of data that supports distinct genera in Nectriaceae based on morphology, biology, and phylogeny is disregarded. A DNA phylogeny based on 19 orthologous protein-coding genes was presented to support a very broad concept of Fusarium at the F1 node in Nectriaceae. Here, we demonstrate that re-analyses of this dataset show that all 19 genes support the F3 node that represents Fusarium sensu stricto as defined by F. sambucinum (sexual morph synonym Gibberella pulicaris). The backbone of the phylogeny is resolved by the concatenated alignment, but only six of the 19 genes fully support the F1 node, representing the broad circumscription of Fusarium. Furthermore, a re-analysis of the concatenated dataset revealed alternate topologies in different phylogenetic algorithms, highlighting the deep divergence and unresolved placement of various Nectriaceae lineages proposed as members of Fusarium. Species of Fusarium s. str. are characterised by Gibberella sexual morphs, asexual morphs with thin- or thick-walled macroconidia that have variously shaped apical and basal cells, and trichothecene mycotoxin production, which separates them from other fusarioid genera. Here we show that the Wollenweber concept of Fusarium presently accounts for 20 segregate genera with clear-cut synapomorphic traits, and that fusarioid macroconidia represent a character that has been gained or lost multiple times throughout Nectriaceae. Thus, the very broad circumscription of Fusarium is blurry and without apparent synapomorphies, and does not include all genera with fusarium-like macroconidia, which are spread throughout Nectriaceae (e.g., Cosmosporella, Macroconia, Microcera). In th

Published
2021

17. Fusarium: more than a node or a foot-shaped basal cell

Author

Universitat Rovira i Virgili, Crous, P. W.; Lombard, L.; Sandoval-Denis, M.; Seifert, K. A.; Schroers, H-J; Chaverri, P.; Gene, J.; Guarro, J.; Hirooka, Y.; Bensch, K.; Kema, G. H. J.; Lamprecht, S. C.; Cai, L.; Rossman, A. Y.; Stadler, M.; Summerbell, R. C.; Taylor, J. W.; Ploch, S.; Visagie, C. M.; Yilmaz, N.; Frisvad, J. C.; Abdel-Azeem, A. M.; Abdollahzadeh, J.; Abdolrasouli, A.; Akulov, A.; Alberts, J. F.; Araujo, J. P. M.; Ariyawansa, H. A.; Bakhshi, M.; Bendiksby, M.; Amor, A. Ben Hadj; Bezerra, J. D. P.; Boekhout, T.; Camara, M. P. S.; Carbia, M.; Cardinali, G.; Castaneda-Ruiz, R. F.; Celis, A.; Chaturvedi, V; Collemare, J.; Croll, D.; Damm, U.; Decock, C. A.; de Vries, R. P.; Ezekiel, C. N.; Fan, X. L.; Fernandez, N. B.; Gaya, E.; Gonzalez, C. D.; Gramaje, D.; Groenewald, J. Z.; Grube, M.; Guevara-Suarez, M.; Gupta, V. K.; Guarnaccia, V; Haddaji, A.; Hagen, F.; Haelewaters, D.; Hansen, K.; Hashimoto, A.; Hernandez-Restrepo, M.; Houbraken, J.; Hubka, V; Hyde, K. D.; Iturriaga, T.; Jeewon, R.; Johnston, P. R.; Jurjevic, Z.; Karalti, I; Korsten, L.; Kuramae, E. E.; Kusan, I; Labuda, R.; Lawrence, D. P.; Lee, H. B.; Lechat, C.; Li, H. Y.; Litovka, Y. A.; Maharachchikumbura, S. S. N.; Marin-Felix, Y.; Kemkuignou, B. Matio; Matocec, N.; McTaggart, A. R.; Mlcoch, P.; Mugnai, L.; Nakashima, C.; Nilsson, R. H.; Noumeur, S. R.; Pavlov, I. N.; Peralta, M. P.; Phillips, A. J. L.; Pitt, J., I; Polizzi, G.; Quaedvlieg, W.; Rajeshkumar, K. C.; Restrepo, S.; Rhaiem, A.; Robert, J.; Robert, V; Rodrigues, A. M.; Salgado-Salazar, C.; Samson, R. A.; Santos, A. C. S.; Shivas, R. G.; Souza-Motta, C. M.; Sun, G. Y.; Swart, W. J.; Szoke, S.; Tan, Y. P.; Taylor, J. E.; Taylor, P. W. J.; Tiago, P., V; Vaczy, K. Z.; van de Wiele, N.; van der Merwe, N. A.; Verkley, G. J. M.; Vieira, W. A. S.; Vizzini, A.; Weir, B. S., Universitat Rovira i Virgili, and Crous, P. W.; Lombard, L.; Sandoval-Denis, M.; Seifert, K. A.; Schroers, H-J; Chaverri, P.; Gene, J.; Guarro, J.; Hirooka, Y.; Bensch, K.; Kema, G. H. J.; Lamprecht, S. C.; Cai, L.; Rossman, A. Y.; Stadler, M.; Summerbell, R. C.; Taylor, J. W.; Ploch, S.; Visagie, C. M.; Yilmaz, N.; Frisvad, J. C.; Abdel-Azeem, A. M.; Abdollahzadeh, J.; Abdolrasouli, A.; Akulov, A.; Alberts, J. F.; Araujo, J. P. M.; Ariyawansa, H. A.; Bakhshi, M.; Bendiksby, M.; Amor, A. Ben Hadj; Bezerra, J. D. P.; Boekhout, T.; Camara, M. P. S.; Carbia, M.; Cardinali, G.; Castaneda-Ruiz, R. F.; Celis, A.; Chaturvedi, V; Collemare, J.; Croll, D.; Damm, U.; Decock, C. A.; de Vries, R. P.; Ezekiel, C. N.; Fan, X. L.; Fernandez, N. B.; Gaya, E.; Gonzalez, C. D.; Gramaje, D.; Groenewald, J. Z.; Grube, M.; Guevara-Suarez, M.; Gupta, V. K.; Guarnaccia, V; Haddaji, A.; Hagen, F.; Haelewaters, D.; Hansen, K.; Hashimoto, A.; Hernandez-Restrepo, M.; Houbraken, J.; Hubka, V; Hyde, K. D.; Iturriaga, T.; Jeewon, R.; Johnston, P. R.; Jurjevic, Z.; Karalti, I; Korsten, L.; Kuramae, E. E.; Kusan, I; Labuda, R.; Lawrence, D. P.; Lee, H. B.; Lechat, C.; Li, H. Y.; Litovka, Y. A.; Maharachchikumbura, S. S. N.; Marin-Felix, Y.; Kemkuignou, B. Matio; Matocec, N.; McTaggart, A. R.; Mlcoch, P.; Mugnai, L.; Nakashima, C.; Nilsson, R. H.; Noumeur, S. R.; Pavlov, I. N.; Peralta, M. P.; Phillips, A. J. L.; Pitt, J., I; Polizzi, G.; Quaedvlieg, W.; Rajeshkumar, K. C.; Restrepo, S.; Rhaiem, A.; Robert, J.; Robert, V; Rodrigues, A. M.; Salgado-Salazar, C.; Samson, R. A.; Santos, A. C. S.; Shivas, R. G.; Souza-Motta, C. M.; Sun, G. Y.; Swart, W. J.; Szoke, S.; Tan, Y. P.; Taylor, J. E.; Taylor, P. W. J.; Tiago, P., V; Vaczy, K. Z.; van de Wiele, N.; van der Merwe, N. A.; Verkley, G. J. M.; Vieira, W. A. S.; Vizzini, A.; Weir, B. S.

Abstract

Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), Faculty of Natural and Agricultural Sciences, University of Pretoria, P. Bag X20, Hatfield, 0028, Pretoria, South Africa; 20Department of Biotechnology and Biomedicine, DTU-Bioengineering, Technical University of Denmark, 2800, Kongens Lyngby, Denmark; 21Systematic Mycology Lab., Botany and Microbiology Department, Faculty of Science, Suez Canal University, Ismailia, 41522, Egypt; 22Department of Plant Protection, Faculty of Agriculture, University of Kurdistan, P.O. Box 416, Sanandaj, Iran; 23Department of Medical Microbiology, King's College Hospital, London, UK;24Department of Infectious Diseases, Imperial College London, London, UK;25Department of Mycology and Plant Resistance, V. N. Karazin Kharkiv National University, Maidan Svobody 4, 61022, Kharkiv, Ukraine; 26Department of Food Science and Technology, Cape Peninsula University of Technology, P.O. Box 1906, Bellville, 7535, South Africa; 27School of Forest Resources and Conservation, University of Florida, Gainesville, FL, USA; 28Department of Plant Pathology and Microbiology, College of Bio-Resources and Agriculture, National Taiwan University, No.1, Sec.4, Roosevelt Road, Taipei, 106, Taiwan, ROC

Published
2021

18. Clinical features and visual outcomes of Japanese patients with scleritis

Author

Keino, H., Watanabe, T., Taki, W., Nakashima, C., and Okada, A.A.

Subjects
Scleritis -- Care and treatment, Scleritis -- Patient outcomes, Scleritis -- Demographic aspects, Scleritis -- Research, Corticosteroids -- Dosage and administration, Corticosteroids -- Research, Immunosuppressive agents -- Dosage and administration, Immunosuppressive agents -- Research, Health
Published
2010

20. Ascomycota actin (act) gene, partial sequence

Author

Crous, P.W., Braun, U., Hunter, G.C., Wingfield, M.J., Verkley, G.J.M., Shin, H.D., Nakashima, C., Groenewald, J.Z., Crous, P.W., Braun, U., Hunter, G.C., Wingfield, M.J., Verkley, G.J.M., Shin, H.D., Nakashima, C., and Groenewald, J.Z.

Published
2020

29. SPARC is a possible predictive marker for albumin-bound paclitaxel in non-small-cell lung cancer

Author

Komiya K, Nakamura T, Nakashima C, Takahashi K, Umeguchi H, Watanabe N, Sato A, Takeda Y, Kimura S, and Sueoka-Aragane N

Subjects
squamous cell carcinoma, lung cancer, nab-paclitaxel, SPARC, lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens, predictive marker, lcsh:RC254-282
Abstract

Kazutoshi Komiya,1 Tomomi Nakamura,1 Chiho Nakashima,1 Koichiro Takahashi,1 Hitomi Umeguchi,1,2 Naomi Watanabe,1 Akemi Sato,1 Yuji Takeda,1,3 Shinya Kimura,1 Naoko Sueoka-Aragane1 1Department of Internal Medicine, Division of Hematology, Respiratory Medicine and Oncology, Faculty of Medicine, Saga University, 2Japanese Red Cross Karatsu Hospital, 3Department of Thoracic Surgery, Faculty of Medicine, Saga University, Saga, Japan Objectives: Nanoparticle albumin-bound paclitaxel (nab-paclitaxel) produced good tumor response in cases with lung squamous cell carcinoma, one of the most difficult cancers to treat. Secreted protein acidic and rich in cysteine (SPARC) binds to albumin, suggesting that SPARC plays an important role in tumor uptake of nab-paclitaxel. There is as yet no predictive marker for cytotoxic agents against non-small-cell lung cancer (NSCLC), and hence we believed that SPARC expression might be associated with tumor response to nab-paclitaxel.Patients and methods: We studied stromal SPARC reactivity and its association with clinicopathological characteristics in 200 cases of NSCLC using a custom tissue microarray fabricated in our laboratory by immunohistochemical staining. We also investigated the relationship between stromal SPARC reactivity and tumor response to nab-paclitaxel using biopsy or surgical specimens obtained from advanced or recurrent lung cancer patients.Results: High SPARC stromal reactivity (>50% of optical fields examined) was detected in 16.5% of cases and intermediate SPARC reactivity (10%–50%) in 56% of cases. High expression in cancer cells was rare (five cases). Stromal SPARC level was correlated with smoking index, squamous cell carcinoma, and vessel invasion. Furthermore, patients with high stromal SPARC reactivity in biopsy specimens such as transbronchial lung biopsy or surgical specimens tended to respond better to nab-paclitaxel.Conclusion: Stromal SPARC was detected by immunohistochemical staining in ~70% of NSCLC cases, and good tumor response to nab-paclitaxel was correlated with high stromal SPARC reactivity. SPARC may be a useful predictive marker for selecting patients likely to respond favorably to nab-paclitaxel treatment. Keywords: lung cancer, nab-paclitaxel, SPARC, predictive marker, squamous cell carcinoma

Published
2016

31. P1839Platelet aggregability evaluation in patients with acute coronary syndromes scheduled for coronary artery bypass graft. The PLAT-CABG study

Author

Nakashima, C A K, primary, Dallan, L A O, additional, Lisboa, L A F, additional, Hajjar, L A, additional, Soeiro, A M, additional, Silva, B A, additional, Costa, M S S, additional, Dornas, C J C B, additional, Dalcoquio, T F, additional, Furtado, R H M, additional, Baracioli, L M, additional, Fukushima, J T, additional, Gurbel, P A, additional, Giugliano, R P, additional, and Nicolau, J C, additional

Published
2019
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32. P1.01-47 Prospective Study for Usefulness of Plasma DNA on Prediction of Third Generation EGFR Tyrosine Kinase Inhibitors (S-PLAT Study)

Author

Nakashima, C., primary, Yoshida, H., additional, Matsumoto, N., additional, Iwanaga, K., additional, Ebi, N., additional, Nishiyama, A., additional, Yatera, K., additional, Kuyama, S., additional, Fukuda, M., additional, Ushijima, S., additional, Umeguchi, H., additional, Harada, D., additional, Kashiwabara, K., additional, Suetsugu, T., additional, Fujimoto, N., additional, Tanaka, F., additional, Uramoto, H., additional, Yoshii, C., additional, Nakatomi, K., additional, Nosaki, K., additional, Ichikawa, Y., additional, Aoe, K., additional, Inoue, K., additional, Takayama, K., additional, Kato, M., additional, and Sueoka-Aragane, N., additional

Published
2019
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35. Phylogeny and taxonomy of the genus Tubakia s. lat.

Author

Braun, Uwe, Nakashima, C., Crous, P.W., Groenewald, Ewald, Moreno-Rico, Onésimo, Rooney-Latham, S., Blomquist, C.L., Haas, J, Marmolejo, J, Braun, Uwe, Nakashima, C., Crous, P.W., Groenewald, Ewald, Moreno-Rico, Onésimo, Rooney-Latham, S., Blomquist, C.L., Haas, J, and Marmolejo, J

Abstract

The genus Tubakia is revised on the basis of morphological and phylogenetic data. The phylogenetic affinity of Tubakia to the family Melanconiellaceae (Diaporthales) was recently postulated, but new analyses based on sequences retrieved from material of the type species of Tubakia, T. dryina, support a family of its own, viz. Tubakiaceae fam. nov. Our phylogenetic analyses revealed the heterogeneity of Tubakia s. lat. which is divided into several genera, viz., Tubakia s. str., Apiognomonioides gen. nov. (type species: Apiognomonioides supraseptata), Involutiscutellula gen. nov. (type species: Involutiscutellula rubra), Oblongisporothyrium gen. nov. (type species: Oblongisporothyrium castanopsidis), Paratubakia gen. nov. (type species: Paratubakia subglobosa), Racheliella gen. nov. (type species: Racheliella wingfieldiana sp. nov.), Saprothyrium gen. nov. (type species: Saprothyrium thailandense) and Sphaerosporithyrium gen. nov. (type species: Sphaerosporithyrium mexicanum sp. nov.). Greeneria saprophytica is phylogenetically closely allied to Racheliella wingfieldiana and is therefore reallocated to Racheliella. Particular emphasis is laid on a revision and phylogenetic analyses of Tubakia species described from Japan and North America. Almost all North American collections of this genus were previously referred to as T. dryina s. lat., which is, however, a heterogeneous complex. Several new North American species have recently been described. The new species Sphaerosporithyrium mexicanum, Tubakia melnikiana and T. sierrafriensis, causing leaf spots on several oak species found in the North-Central Mexican state Aguascalientes and the North-Eastern Mexican state Nuevo León, are described, illustrated, and compared with similar species. Several additional new species are introduced, including Tubakia californica based on Californian collections on various species of the genera Chrysolepis, Notholithocarpus and Quercus, and T. dryinoides, T. oblongispora, T. paradry

Published
2018

36. Phylogeny and taxonomy of the genus Tubakia s. lat.

Author

Braun, U., Nakashima, C., Crous, P.W., Groenewald, J.Z., Moreno-Rico, O., Rooney-Latham, S., Blomquist, C.L., Haas, J., Marmolejo, J., Braun, U., Nakashima, C., Crous, P.W., Groenewald, J.Z., Moreno-Rico, O., Rooney-Latham, S., Blomquist, C.L., Haas, J., and Marmolejo, J.

Abstract

The genus Tubakia is revised on the basis of morphological and phylogenetic data. The phylogenetic affinity of Tubakia to the family Melanconiellaceae (Diaporthales) was recently postulated, but new analyses based on sequences retrieved from material of the type species of Tubakia, T. dryina, support a family of its own, viz. Tubakiaceae fam. nov. Our phylogenetic analyses revealed the heterogeneity of Tubakia s. lat. which is divided into several genera, viz., Tubakia s. str., Apiognomonioides gen. nov. (type species: Apiognomonioides supraseptata), Involutiscutellula gen. nov. (type species: Involutiscutellula rubra), Oblongisporothyrium gen. nov. (type species: Oblongisporothyrium castanopsidis), Paratubakia gen. nov. (type species: Paratubakia subglobosa), Racheliella gen. nov. (type species: Racheliella wingfieldiana sp. nov.), Saprothyrium gen. nov. (type species: Saprothyrium thailandense) and Sphaerosporithyrium gen. nov. (type species: Sphaerosporithyrium mexicanum sp. nov.). Greeneria saprophytica is phylogenetically closely allied to Racheliella wingfieldiana and is therefore reallocated to Racheliella. Particular emphasis is laid on a revision and phylogenetic analyses of Tubakia species described from Japan and North America. Almost all North American collections of this genus were previously referred to as T. dryina s. lat., which is, however, a heterogeneous complex. Several new North American species have recently been described. The new species Sphaerosporithyrium mexicanum, Tubakia melnikiana and T. sierrafriensis, causing leaf spots on several oak species found in the North-Central Mexican state Aguascalientes and the North-Eastern Mexican state Nuevo León, are described, illustrated, and compared with similar species. Several additional new species are introduced, including Tubakia californica based on Californian collections on various species of the genera Chrysolepis, Notholithocarpus and Quercus, and T. dryinoides, T. oblongispora, T. paradry

Published
2018

37. Identification of CD49a+ CD8+ resident memory T cells in vitiligo‐like lesions associated with nivolumab treatment for melanoma.

Author

Nakashima, C., Ishida, Y., Nakagawa, K., Irie, H., Hirata, M., Kataoka, T., Otsuka, A., and Kabashima, K.

Subjects
*VITILIGO, *T cells, *MELANOMA, *CYTOTOXIC T cells
Abstract

Identification of CD49a+ CD8+ resident memory T cells in vitiligo-like lesions associated with nivolumab treatment for melanoma CD103+ T SB RM sb cells, generated as a result of melanoma-related vitiligo, mediated protection against melanoma in a murine model.[8] Another report revealed that CD49a+ CD103+ CD8+ T SB RM sb cells in human vitiligo vulgaris were poised for cytotoxic functions.[6] Our data suggest that vitiligo vulgaris, and vitiligo-like lesions induced by nivolumab likely share a similar aetiology mediated by CD49a+ CD103+ CD8+ T SB RM sb cells. Further studies are desired to understand the role of CD49a+ CD103+ CD8+ T SB RM sb cells in vitiligo-like lesion related with ICI treatment for melanoma. [Extracted from the article]

Published
2020
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40. Phylogeny and taxonomy of the genusTubakia s. lat.

Author

Braun, U., primary, Nakashima, C., additional, Crous, P.W., additional, Groenewald, J.Z., additional, Moreno-Rico, O., additional, Rooney-Latham, S., additional, Blomquist, C.L., additional, Haas, J., additional, and Marmolejo, J., additional

Published
2018
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46. Mycosphaerellaceae – Chaos or clarity?

Author

Videira, S.I.R., Groenewald, J.Z., Nakashima, C., Braun, U., Barreto, Robert W., de Wit, Pierre J. G. M., Crous, P.W., Videira, S.I.R., Groenewald, J.Z., Nakashima, C., Braun, U., Barreto, Robert W., de Wit, Pierre J. G. M., and Crous, P.W.

Abstract

The Mycosphaerellaceae represent thousands of fungal species that are associated with diseases on a wide range of plant hosts. Understanding and stabilising the taxonomy of genera and species of Mycosphaerellaceae is therefore of the utmost importance given their impact on agriculture, horticulture and forestry. Based on previous molecular studies, several phylogenetic and morphologically distinct genera within the Mycosphaerellaceae have been delimited. In this study a multigene phylogenetic analysis (LSU, ITS and rpb2) was performed based on 415 isolates representing 297 taxa and incorporating ex-type strains where available. The main aim of this study was to resolve the phylogenetic relationships among the genera currently recognised within the family, and to clarify the position of the cercosporoid fungi among them. Based on these results many well-known genera are shown to be paraphyletic, with several synapomorphic characters that have evolved more than once within the family. As a consequence, several old generic names including Cercosporidium, Fulvia, Mycovellosiella, Phaeoramularia and Raghnildiana are resurrected, and 32 additional genera are described as new. Based on phylogenetic data 120 genera are now accepted within the family, but many currently accepted cercosporoid genera still remain unresolved pending fresh collections and DNA data. The present study provides a phylogenetic framework for future taxonomic work within the Mycosphaerellaceae.

Published
2017

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