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Biotic communities are shaped by adaptations from generations of exposure to selective pressures by recurrent and often infrequent events. In large rivers, floods can act as significant agents of change, causing considerable physical and biotic disturbance while often enhancing productivity and diversity. We show that the relative balance between these seemingly divergent outcomes can be explained by the rhythmicity, or predictability of the timing and magnitude, of flood events. By analyzing biological data for large rivers that span a gradient of rhythmicity in the Neotropics and tropical Australia, we find that systems with rhythmic annual floods have higher-fish species richness, more stable avian populations, and elevated rates of riparian forest production compared with those with arrhythmic flood pulses. Intensification of the hydrological cycle driven by climate change, coupled with reductions in runoff due to water extractions for human use and altered discharge from impoundments, is expected to alter the hydrologic rhythmicity of floodplain rivers with significant consequences for both biodiversity and productivity.

Well-functioning food webs are fundamental for sustaining rivers as ecosystems and maintaining associated aquatic and terrestrial communities. The current emphasis on restoring habitat structure--without explicitly considering food webs--has been less successful than hoped in terms of enhancing the status of targeted species and often overlooks important constraints on ecologically effective restoration. We identify three priority food web-related issues that potentially impede successful river restoration: uncertainty about habitat carrying capacity, proliferation of chemicals and contaminants, and emergence of hybrid food webs containing a mixture of native and invasive species. Additionally, there is the need to place these food web considerations in a broad temporal and spatial framework by understanding the consequences of altered nutrient, organic matter (energy), water, and thermal sources and flows, reconnecting critical habitats and their food webs, and restoring for changing environments. As an illustration, we discuss how the Columbia River Basin, site of one of the largest aquatic/riparian restoration programs in the United States, would benefit from implementing a food web perspective. A food web perspective for the Columbia River would complement ongoing approaches and enhance the ability to meet the vision and legal obligations of the US Endangered Species Act, the Northwest Power Act (Fish and Wildlife Program), and federal treaties with Northwest Indian Tribes while meeting fundamental needs for improved river management.

We provide a case study prioritizing instream flow restoration activities by sub-basin according to the habitat needs of Endangered Species Act (ESA)-listed salmonids relative to climate change in the central Columbia River basin in Washington State (USA). The objective is to employ scenario analysis to inform and improve existing instream flow restoration projects. We assess the sensitivity of late summer (July, August, and September) flows to the following scenario simulations - singly or in combination: climate change, changes in the quantity of water used for irrigation and possible changes to existing water resource policy. Flows for four sub-basins were modeled using the Water Evaluation and Planning system (WEAP) under historical and projected conditions of 2020 and 2040 for each scenario. Results indicate that Yakima will be the most flow-limited sub-basin with average reductions in streamflow of 41% under climate conditions of 2020 and 56% under 2040 conditions; 1.3-2.5 times greater than those of other sub-basins. In addition, irrigation plays a key role in the hydrology of the Yakima sub-basin - with flow reductions ranging from 78% to 90% under severe to extreme (i.e., 20-40%) increases in agricultural water use (2.0-4.4 times the reductions in the other sub-basins). The Yakima and Okanogan sub-basins are the most responsive to simulations of flow-bolstering policy change (providing salmon with first priority water allocation and at biologically relevant flows), as demonstrated by 91-100% target flows attained. The Wenatchee and Methow sub-basins do not exhibit similar responsiveness to simulated policy changes. Considering climate change only, we conclude that flow restoration should be prioritized first in the Yakima and Wenatchee sub-basins, and second in the Okanogan and Methow. Considering both climate change and possible policy changes, we recommend that the Yakima sub-basin receive the highest priority for flow restoration activities to sustain critical instream habitat for ESA-listed salmonids., (© 2012 Blackwell Publishing Ltd.)

Piles of large wood (LW) deposited by major floods in river corridors can interact with naturally occurring wildfires from uplands to impact the regeneration of riparian vegetation. This study examines the spatial and short-term temporal response of riparian vegetation and soil nutrients to fire along the Sabie River, South Africa, with special emphasis on the effects of burned LW piles. At the study site there were 112 species of plants recorded with 28% of species restricted to the burned plots. As expected, vegetation cover was significantly lower in burned plots as compared with the unburned plots 12 months postfire. There was a significant influence of LW on species richness with fewer species recorded in the LW plots. For both fire and LW treatments, plant cover showed a significant change over three years. After an initial increase from 12 to 24 months (postfire) there was a decline in plant cover after 36 months. Species community composition was distinctly different between burned and unburned plots 12 months postfire, and the presence of LW affected species composition for burned plots but not for unburned ones. Time series ordination of LW plots highlighted the changes in species composition over the three years of sampling. Of trees with accumulations of LW within 5 m of their base, 48% had been killed by fire as compared to only 4% with no LW accumulations in close proximity. Soil-available P was significantly higher in the burned plots and even higher with burned LW while there were no effects on soil total N. There was also a significant positive trend between available P in soils and plant vegetation cover. Soil-exchangeable K was also significantly higher and total C significantly lower in the burned and LW plots. Burned plots also had significantly higher soil electrical conductivity (EC) and soil pH. The patchy nature of the studied fire, whose complexity is exacerbated by the distribution of flood deposited LW, acted to create a mosaic of alternate successional states as the riparian community recovers from flooding and the subsequent fire. We suspect that the resultant heterogeneity will increase ecosystem resilience by providing flexibility in the form of more options for a system response to subsequent disturbances.

We use relationships between modern Pacific salmon (Oncorhynchus spp.) escapement (migrating adults counted at weirs or dams) and riparian tree-ring growth to reconstruct the abundance of stream-spawning salmon over 150-350 years. After examining nine sites, we produced reconstructions for five mid-order rivers and four salmon species over a large geographic range in the Pacific Northwest: chinook (O. tschwatcha) in the Umpqua River, Oregon, USA; sockeye (O. nerka) in Drinkwater Creek, British Columbia, Canada; pink (O. gorbuscha) in Sashin Creek, southeastern Alaska, USA; chum (O. keta) in Disappearance Creek, southeastern Alaska, USA; and pink and chum in the Kadashan River, southeastern Alaska, USA. We first derived stand-level, non-climatic growth chronologies from riparian trees using standard dendroecology methods and differencing. When the chronologies were compared to 18-55 years of adult salmon escapement we detected positive, significant correlations at five of the nine sites. Regression models relating escapement to tree-ring growth at the five sites were applied to the differenced chronologies to reconstruct salmon abundance. Each reconstruction contains unique patterns characteristic of the site and salmon species. Reconstructions were validated by comparison to local histories (e.g., construction of dams and salmon canneries) and regional fisheries data such as salmon landings and aerial surveys and the Pacific Decadal Oscillation climate index. The reconstructions capture lower-frequency cycles better than extremes and are most useful for determination and comparison of relative abundance, cycles, and the effects of interventions. Reconstructions show lower population cycle maxima in both Umpqua River chinook and Sashin Creek pink salmon in recent decades. The Drinkwater Creek reconstruction suggests that sockeye abundance since the mid-1990s has been 15-25% higher than at any time since 1850, while no long-term deviations from natural cycles are detected for salmon in the Kadashan River or in Disappearance Creek. Decadal-scale cycles in salmon abundance with periods of 25-68 years were detected in all of the reconstructions. This novel approach provides river-specific, long-term perspectives on salmon abundance and cycles. Additionally, it provides a new frame of reference for maintaining and rebuilding individual stocks and for striking a balance between societal demands and the limited, always-changing salmon resource.

Large logs, important agents of biophysical heterogeneity in temperate floodplain rivers, have been virtually eliminated from modified systems. Our purpose was to quantify the sources and dynamics of large logs (> or = 1 m diameter) in the mainstem of a nearly pristine system: the Queets River, Washington, USA. Erosion of forests by the river supplies 0.40 logs x (100 m)(-1) x yr(-1) to the channel. Most (72%) are new logs entering the river for the first time as the river undercuts mature fluvial terraces dominated by large conifers. Retrospective airphoto analyses demonstrate that, over 63 years, the Queets River recruits 95% of new logs from a riparian corridor extending 265 m laterally on both banks, mostly through channel meandering. However, input rates are patchy, with 10% of the valley length supplying 38% of the new logs. As the river moves laterally, remnant logs are left on channel surfaces that later develop riparian forests and reenter the river when those forests erode. Remnant logs lying on the floodplain forest floor surface or buried in alluvium constitute 21% and 7% of the annual inputs from bank erosion, respectively. We estimate that 50% of logs deposited in the channel in a given year, including those underpinning logjams, are transported downriver within five years. Over the next 55 years, bank erosion reclaims an additional 23%, leaving 27% of the logs stable for > 60 years. Simulations indicate that recurrent transport is common, with half of the large conifers being deposited in > or = 3 locations and transported > or = 1.5 km prior to disintegrating. One in ten logs links distant reaches by occupying > or = 7 locations spanning > or = 12.0 km. Instream supplies are therefore a mixture of new and old logs from nearby and upstream forests, sustained by the recapture and transport of stockpiled remnant logs during periods when new inputs are low. We propose that patchy input rates and the periodic rearrangement of large logs are important drivers of temporal variation in river valley habitats, adding to the spatial complexity created by stable logs. These findings underscore the importance of extensive mature forests and connectivity in temperate floodplain rivers.

Accounting for natural differences in flow variability among rivers, and understanding the importance of this for the protection of freshwater biodiversity and maintenance of goods and services that rivers provide, is a great challenge for water managers and scientists. Nevertheless, despite considerable progress in understanding how flow variability sustains river ecosystems, there is a growing temptation to ignore natural system complexity in favor of simplistic, static, environmental flow "rules" to resolve pressing river management issues. We argue that such approaches are misguided and will ultimately contribute to further degradation of river ecosystems. In the absence of detailed empirical information of environmental flow requirements for rivers, we propose a generic approach that incorporates essential aspects of natural flow variability shared across particular classes of rivers that can be validated with empirical biological data and other information in a calibration process. We argue that this approach can bridge the gap between simple hydrological "rules of thumb" and more comprehensive environmental flow assessments and experimental flow restoration projects.

Freshwater biodiversity is the over-riding conservation priority during the International Decade for Action - 'Water for Life' - 2005 to 2015. Fresh water makes up only 0.01% of the World's water and approximately 0.8% of the Earth's surface, yet this tiny fraction of global water supports at least 100000 species out of approximately 1.8 million - almost 6% of all described species. Inland waters and freshwater biodiversity constitute a valuable natural resource, in economic, cultural, aesthetic, scientific and educational terms. Their conservation and management are critical to the interests of all humans, nations and governments. Yet this precious heritage is in crisis. Fresh waters are experiencing declines in biodiversity far greater than those in the most affected terrestrial ecosystems, and if trends in human demands for water remain unaltered and species losses continue at current rates, the opportunity to conserve much of the remaining biodiversity in fresh water will vanish before the 'Water for Life' decade ends in 2015. Why is this so, and what is being done about it? This article explores the special features of freshwater habitats and the biodiversity they support that makes them especially vulnerable to human activities. We document threats to global freshwater biodiversity under five headings: overexploitation; water pollution; flow modification; destruction or degradation of habitat; and invasion by exotic species. Their combined and interacting influences have resulted in population declines and range reduction of freshwater biodiversity worldwide. Conservation of biodiversity is complicated by the landscape position of rivers and wetlands as 'receivers' of land-use effluents, and the problems posed by endemism and thus non-substitutability. In addition, in many parts of the world, fresh water is subject to severe competition among multiple human stakeholders. Protection of freshwater biodiversity is perhaps the ultimate conservation challenge because it is influenced by the upstream drainage network, the surrounding land, the riparian zone, and - in the case of migrating aquatic fauna - downstream reaches. Such prerequisites are hardly ever met. Immediate action is needed where opportunities exist to set aside intact lake and river ecosystems within large protected areas. For most of the global land surface, trade-offs between conservation of freshwater biodiversity and human use of ecosystem goods and services are necessary. We advocate continuing attempts to check species loss but, in many situations, urge adoption of a compromise position of management for biodiversity conservation, ecosystem functioning and resilience, and human livelihoods in order to provide a viable long-term basis for freshwater conservation. Recognition of this need will require adoption of a new paradigm for biodiversity protection and freshwater ecosystem management - one that has been appropriately termed 'reconciliation ecology'.

We investigated whether large woody debris (LWD) piles create nodes of environmental resources that contribute to the recovery of riparian vegetation and that also augment the heterogeneity and resilience of the riverine system. River and riparian systems are typified by a large degree of heterogeneity and complex interactions between abiotic and biotic elements. Disturbance such as floods re-distribute the resources, such as LWD, and thereby add greater complexity to the system. We examined this issue on a semi-arid savanna river where approximately a 100-year return interval flood in 2000 uprooted vegetation and deposited substantial LWD. We investigated the micro-environment within the newly established LWD piles and compared this with conditions at adjacent reference sites containing no LWD. We found soil nutrient concentrations to be significantly higher in LWD piles compared with the reference plots (total N +19%, available P +51%, and total C +36%). Environmental variables within LWD piles and reference sites varied with landscape position in the river-riparian landscape and with LWD pile characteristics. Observed differences were generally between piles located in the terrestrial and riparian areas as compared to piles located on the macro-channel floor. After 3 years the number and cover of woody species were significantly higher when associated with LWD piles, regardless of landscape position or pile type. We conclude that LWD piles formed after large floods act as resource nodes by accumulating fine sediments and by retaining soil nutrients and soil moisture. The subsequent influence of LWD deposition on riparian heterogeneity is discerned at several spatial scales including within and between LWD piles, across landscape positions and between channel types. LWD piles substantially influence the initial developmental of riparian vegetation as the system regenerates following large destructive floods.

Anadromous Pacific salmon (Oncorhynchus spp.) transport marine-derived nitrogen (MDN) to the rivers in which they spawn. Isotopic analyses of riparian vegetation in a boreal Alaskan watershed indicate that trees and shrubs near spawning streams derive ~24-26% of their foliar nitrogen (N) from salmon. Basal area growth of white spruce (Picea glauca) is enhanced at sites receiving MDN inputs. This marine N subsidy appears to be less important to riparian ecosystems where symbiotic N fixation by alder (Alnus crispa) is prevalent, although salmon carcasses may nonetheless be an important source of other marine-derived nutrients affecting productivity in these forests. These findings illustrate the complexity of interactions surrounding riparian forests and the interconnectedness of river and riparian ecosystems.

We suggest that fluvial ecosystems are legitimate users of water and that there are basic ecological principles guiding the maintenance of long-term ecological vitality. This article articulates some fundamental relationships between physical and ecological processes, presents basic principles for maintaining the vitality of fluvial ecosystems, identifies several major scientific challenges and opportunities for effective implementation of the basic ecological principles, and acts as an introduction to three specific articles to follow on biodiversity, biogeochemistry, and riparian communities. All the objectives, by necessity, link climate, land, and fresh water. The basic principles proposed are: (1) the natural flow regime shapes the evolution of aquatic biota and ecological processes, (2) every river has a characteristic flow regime and an associated biotic community, and (3) aquatic ecosystems are topographically unique in occupying the lowest position in the landscape, thereby integrating catchment-scale processes. Scientific challenges for the immediate future relate to quantifying cumulative effects, linking multidisciplinary knowledge and models, and formulating effective monitoring and assessment procedures. Additionally, forecasting the ecological consequences of changing water regimes is a fundamental challenge for science, especially as environmental issues related to fresh waters escalate in the next two to three decades.

Understanding the environmental consequences of changing water regimes is a daunting challenge for both resource managers and ecologists. Balancing human demands for fresh water with the needs of the environment for water in appropriate amounts and at the appropriate times are shaping the ways by which this natural resource will be used in the future. Based on past decisions that have rendered many freshwater resources unsuitable for use, we argue that river systems have a fundamental need for appropriate amounts and timing of water to maintain their biophysical integrity. Biophysical integrity is fundamental for the formulation of future sustainable management strategies. This article addresses three basic ecological principles driving the biogeochemical cycle of nitrogen in river systems. These are (1) how the mode of nitrogen delivery affects river ecosystem functioning, (2) how increasing contact between water and soil or sediment increases nitrogen retention and processing, and (3) the role of floods and droughts as important natural events that strongly influence pathways of nitrogen cycling in fluvial systems. New challenges related to the cumulative impact of water regime change, the scale of appraisal of these impacts, and the determination of the impacts due to natural and human changes are discussed. It is suggested that cost of long-term and long-distance cumulative impacts of hydrological changes should be evaluated against short-term economic benefits to determine the real environmental costs.

Detrimental effects of introduced fishes on native amphibian populations have prompted removal of introduced cutthroat (Oncorhynchus clarki), rainbow (Oncorhynchus mykiss), and brook trout ( Salvelinus fontinalis) from naturally fishless lakes at Mt. Rainier National Park, Washington ( U.S.A.). Using paleolimnological indicators (diatoms, invertebrates, and sediment characteristics) in eight 480-year-old sediment cores from eight lakes, we (1) derived estimates of baseline environmental conditions and natural variation, (2) assessed the effects of stocking naturally fishless lakes, and (3) determined whether lakes returned to predisturbance conditions after fish removal (restoration). Diatom floras were relatively stable between 315 and 90 years before present in all lakes; we used this time period to define lake-specific "baseline" conditions. Dissimilarity analyses of diatoms revealed sustained, dramatic changes in diatom floras that occurred approximately 80 years ago (when fish were introduced) in four of five stocked lakes, whereas the diatom floras in two unstocked lakes had not changed significantly in the last 315 years. Diatoms were not preserved in an eighth lake. State changes also occurred in two lakes over 200 years before European settlement of the Pacific Northwest. Preserved invertebrate densities fluctuated dramatically over time in all cores, providing a poor reference for assessing the effects of fishes. Nevertheless, fish-invertebrate interactions have been demonstrated in other paleolimnological studies and may be useful for lower-elevation or more productive lakes. Because diatom communities have not returned to predisturbance assemblages in restored lakes, even 20-30 years after fish removal, we conclude that Mt. Rainier lakes were not successfully restored by the removal of fishes.

Riparian corridors possess an unusually diverse array of species and environmental processes. This "ecological" diversity is related to variable flood regimes, geomorphic channel processes, altitudinal climate shifts, and upland influences on the fluvial corridor. This dynamic environment results in a variety of life history strategies, and a diversity of biogeochemical cycles and rates, as organisms adapt to disturbance regimes over broad spatio-temporal scales. These facts suggest that effective riparian management could ameliorate many ecological issues related to land use and environmental quality. We contend that riparian corridors should play an essential role in water and landscape planning, in the restoration of aquatic systems, and in catalyzing institutional and societal cooperation for these efforts., (© 1993 by the Ecological Society of America.)

Woody materials decayed more rapidly in a first order stream than in larger streams in eastern Quebec, Canada. The rate of annual mass loss (k) was highest (k=1.20) for alder wood chips in a first order stream and lowest (k=0.04) for black spruce wood chips in a ninth order stream. Decay rates for woody materials in a first order stream were inversely related to their initial lignin to nitrogen ratios. In larger streams, decay rates of woody materials were inversely related to their initial lignin concentrations. A number of quantifiable relationships were found to exist between the initial lignin and nitrogen contents of woody materials and the nitrogen dynamics of decaying wood.

Beaver (Castor canadensis) affect the benthic invertebrate community of small woodland streams in Quebec through habitat modifications. Their activities influence community structure through the replacement of lotic taxa by lentic forms and community function by increasing the absolute importance of collectors and predators while decreasing the relative importance of shredders and scrapers in impounded sites. At our study site during the 1983 ice-free season, standing stocks of coarse particulate organic matter (>1 mm) were 2-5 times greater (P<0.05) in impounded sites than riffle sites in spring and summer. Fine (212 μm-1 mm) and very fine (0.5 μm-212 μm) particulate organic matter were 3-10 times greater (P<0.05) in impounded sites in all seasons. Chlorophyll a standing stocks did not differ statistically among sites. Total density and biomass of invertebrates in impoundments were 2-5 times greater (P<0.05) than riffle sites in spring and summer, but statistically similar in autumn. Generic diversity (H') was greater (P<0.05) in unaltered sites in autumn. Non-impounded sites were dominated by Simuliidae, Tanytarsini chironomids, scraping mayflies and net spinning caddisflies while impounded sites were characterized by Tanypodinae and Chironomini chironomids, predacious odonates, Tubificidae, and filtering pelycopods. Our results suggest that current paradigms applied to lotic ecosystems need to be reevaluated to incorporate the influence of beaver upon invertebrate communities.

Salinity tolerance and hypoosmoregulatory ability of anadromous brook trout (Salvelinus fontinalis) were investigated in relation to sex and state of maturation. Seawater survival of mature males was significantly poorer than that of females or immature males. Lowered salinity tolerance of adult males became acute during the autumn photoperiod (normal spawning period) when the gonadosomatic index was high. Plasma [Cl-], [Mg2+], osmolarity and hematocrit were significantly higher in mature males after transfer to seawater, relative to mature females. It is postulated that reduced adult male hypoosmoregulatory ability explains skewed sex ratios in anadromous brook trout populations and may limit the extent of brook trout anadromy.

Beaver (Castor canadensis) influence stream ecosystems through their wood cutting and dam building activities. To quantify this influence we have used measured rates of nitrogen dynamics to construct a nitrogen budget for a section of a second order stream in eastern Québec and a beaver dam in that stream. The budget demonstrates the importance of sediment accumulations and an expanded wetted area to the annual nitrogen economy and to pathways of nitrogen cycling. Major changes after impoundment (per unit area) include a reduction in allochthonous nitrogen and an increase in nitrogen fixation by sediment microbes. Overall, the beaver-modified section accumulated ∼10 3 times more nitrogen than before alteration. The ecosystem implications of beaver activity suggest that current concepts of patterns and processes in running waters require modification.

Harpacticoid copepods are the principal food of chum salmon during the first critical weeks of estuarine life. Heterotrophic food sources are preferentially ingested by harpacticoids. A commercially valuable fisheries resource, usually considered to be planktivorous, is related to a detritus-based, benthically derived food web.