1,744 results on '"Nagase, T."'
Search Results
2. Adsorption mechanism of 4-methyl imidazole on ZSM5-Zeolite from aqueous solution
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Nagase, T., Sato, K., Hashimoto, Y., and Naganuma, H.
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- 2019
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3. Self-shielding effect of a single phase liquid xenon detector for direct dark matter search
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Minamino, A., Abe, K., Ashie, Y., Hosaka, J., Ishihara, K., Kobayashi, K., Koshio, Y., Mitsuda, C., Moriyama, S., Nakahata, M., Nakajima, Y., Namba, T., Ogawa, H., Sekiya, H., Shiozawa, M., Suzuki, Y., Takeda, A., Takeuchi, Y., Taki, K., Ueshima, K., Ebizuka, Y., Ota, A., Suzuki, S., Hagiwara, H., Hashimoto, Y., Kamada, S., Kikuchi, M., Kobayashi, N., Nagase, T., Nakamura, S., Tomita, K., Uchida, Y., Fukuda, Y., Sato, T., Nishijima, K., Maruyama, T., Motoki, D., Itow, Y., Kim, Y. D., Lee, J. I., Moon, S. H., Lim, K. E., Cravens, J. P, and Smy, M. B.
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Astrophysics - Cosmology and Nongalactic Astrophysics ,Astrophysics - Instrumentation and Methods for Astrophysics - Abstract
Liquid xenon is a suitable material for a dark matter search. For future large scale experiments, single phase detectors are attractive due to their simple configuration and scalability. However, in order to reduce backgrounds, they need to fully rely on liquid xenon's self-shielding property. A prototype detector was developed at Kamioka Observatory to establish vertex and energy reconstruction methods and to demonstrate the self-shielding power against gamma rays from outside of the detector. Sufficient self-shielding power for future experiments was obtained., Comment: 8 pages, 8 figures
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- 2009
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4. Distillation of Liquid Xenon to Remove Krypton
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Abe, K., Hosaka, J., Iida, T., Ikeda, M., Kobayashi, K., Koshio, Y., Minamino, A., Miura, M., Moriyama, S., Nakahata, M., Nakajima, Y., Namba, T., Ogawa, H., Sekiya, H., Shiozawa, M., Suzuki, Y., Takeda, A., Takeuchi, Y., Ueshima, K., Yamashita, M., Kaneyuki, K., Ebizuka, Y., Kikuchi, J., Ota, A., Suzuki, S., Takahashi, T., Hagiwara, H., Kamei, T., Miyamoto, K., Nagase, T., Nakamura, S., Ozaki, Y., Sato, T., Fukuda, Y., Nishijima, K., Sakurai, M., Maruyama, T., Motoki, D., Itow, Y., Ohsumi, H., Tasaka, S., Kim, S. B., Kim, Y. D., Lee, J. I., Moon, S. H., Urakawa, Y., Uchino, M., and Kamioka, Y.
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Physics - Instrumentation and Detectors - Abstract
A high performance distillation system to remove krypton from xenon was constructed, and a purity level of Kr/Xe = $\sim 3 \times 10^{-12}$ was achieved. This development is crucial in facilitating high sensitivity low background experiments such as the search for dark matter in the universe., Comment: 15 pages, 11 figures
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- 2008
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5. Scintillation yield of liquid xenon at room temperature
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Ueshima, K., Abe, K., Iida, T., Ikeda, M., Kobayashi, K., Koshio, Y., Minamino, A., Miura, M., Moriyama, S., Nakahata, M., Nakajima, Y., Ogawa, H., Sekiya, H., Shiozawa, M., Suzuki, Y., Takeda, A., Takeuchi, Y., Yamashita, M., Kaneyuki, K., Doke, T., Ebizuka, Y., Kikuchi, J., Ota, A., Suzuki, S., Takahashi, T., Hagiwara, H., Kamei, T., Miyamoto, K., Nagase, T., Nakamura, S., Ozaki, Y., Sato, T., Fukuda, Y., Nishijima, K., Sakurai, M., Maruyama, T., Motoki, D., Itow, Y., Ohsumi, H., Tasaka, S., Kim, S. B., Kim, Y. D., Lee, J. I., and Moon, S. H.
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Physics - Instrumentation and Detectors - Abstract
The intensity of scintillation light emission from liquid xenon at room temperature was measured. The scintillation light yield at 1 deg. was measured to be 0.64 +/- 0.02 (stat.) +/- 0.06 (sys.) of that at -100 deg. Using the reported light yield at -100 deg. (46 photons/keV), the measured light yield at 1 deg. corresponds to 29 photons/keV. This result shows that liquid xenon scintillator gives high light yield even at room temperature., Comment: 16pages,12figures
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- 2008
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6. Reduction in exacerbation of COPD in patients of advanced age using the Japanese Kampo medicine Dai-kenchu-to: a retrospective cohort study
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Jo T, Michihata N, Yamana H, Sasabuchi Y, Matsui H, Urushiyama H, Mitani A, Yamauchi Y, Fushimi K, Nagase T, and Yasunaga H
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COPD ,Kampo ,Muscarinic Antagonist ,Propensity Score ,Survival Analysis ,Diseases of the respiratory system ,RC705-779 - Abstract
Taisuke Jo,1,2 Nobuaki Michihata,1 Hayato Yamana,1 Yusuke Sasabuchi,3 Hiroki Matsui,4 Hirokazu Urushiyama,2 Akihisa Mitani,2 Yasuhiro Yamauchi,2 Kiyohide Fushimi,5 Takahide Nagase,2 Hideo Yasunaga4 1Department of Health Services Research, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan; 2Department of Respiratory Medicine, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan; 3Data Science Center, Jichi Medical University, Tochigi, Japan; 4Department of Clinical Epidemiology and Health Economics, School of Public Health, The University of Tokyo, Tokyo, Japan; 5Department of Health Policy and Informatics, Tokyo Medical and Dental University Graduate School of Medicine, Tokyo, Japan Purpose: Patients with symptomatic COPD are recommended to use inhaled bronchodilators containing long-acting muscarinic receptor antagonists (LAMAs). However, bronchodilators may cause gastrointestinal adverse effects due to anticholinergic reactions, especially in advanced-age patients with COPD. Dai-kenchu-to (TU-100, Da Jian Zhong Tang in Chinese) is the most frequently prescribed Japanese herbal Kampo medicine and is often prescribed to control abdominal bloating and constipation. The purpose of this study was to evaluate the role of Dai-kenchu-to as a supportive therapy in advanced-age patients with COPD. Patients and methods: We used the Japanese Diagnosis Procedure Combination inpatient database and identified patients aged ≥75 years who were hospitalized for COPD exacerbation. We then compared the risk of re-hospitalization for COPD exacerbation or death between patients with and without Dai-kenchu-to using 1-to-4 propensity score matching. A Cox proportional hazards model was used to compare the two groups. We performed subgroup analyses for patients with and without LAMA therapy. Results: Patients treated with Dai-kenchu-to had a significantly lower risk of re-hospitalization or death after discharge; the HR was 0.82 (95% CI, 0.67–0.99) in 1-to-4 propensity score matching. Subgroup analysis of LAMA users showed a significant difference in re-hospitalization or death, while subgroup analysis of LAMA non-users showed no significant difference. Conclusion: Our findings indicate that Dai-kenchu-to may have improved the tolerability of LAMA in advanced-age patients with COPD and, therefore, reduced the risk of re-hospitalization or death from COPD exacerbation. Dai-kenchu-to may be recommended as a useful supportive therapy for advanced-age patients with COPD. Keywords: TU-100, herbal medicine, muscarinic receptor antagonists, propensity score, survival analysis
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- 2018
7. Clinical Course and Typical Chest CT Findings of Olaparib-induced Lung Injury: A Case Series
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Hattori, M., primary, Sato, M., additional, Mikami, Y., additional, Fujii, K., additional, Horiguchi, Y., additional, Shuzui, M., additional, Fukuda, K., additional, Miyamoto, Y., additional, Mori, M., additional, Hinata, M., additional, Kawakami, M., additional, Mitani, A., additional, Tanaka, G., additional, Kage, H., additional, and Nagase, T., additional
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- 2023
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8. Prevalence and characteristics of asthma–COPD overlap syndrome identified by a stepwise approach
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Inoue H, Nagase T, Morita S, Yoshida A, Jinnai T, and Ichinose M
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Lung diseases ,obstructive ,airway hyper-responsiveness ,respiratory function tests ,diagnosis ,differential ,Diseases of the respiratory system ,RC705-779 - Abstract
Hiromasa Inoue,1 Takahide Nagase,2 Satoshi Morita,3 Atsushi Yoshida,4 Tatsunori Jinnai,4 Masakazu Ichinose5 1Department of Pulmonary Medicine, Graduate School of Medical and Dental Sciences, Kagoshima University, Kagoshima, 2Department of Respiratory Medicine, Graduate School of Medicine, The University of Tokyo, Tokyo, 3Department of Biomedical Statistics and Bioinformatics, Kyoto University Graduate School of Medicine, Kyoto, 4Medical Department, AstraZeneca K.K., Osaka, 5Department of Respiratory Medicine, Tohoku University Graduate School of Medicine, Sendai, Japan Background and objective: There is increasing recognition of asthma–COPD overlap syndrome (ACOS), which shares some features of both asthma and COPD; however, the prevalence and characteristics of ACOS are not well understood. The aim of this study was to investigate the prevalence of ACOS among patients with COPD and its characteristics using a stepwise approach as stated in the recent report of the Global Initiative for Asthma (GINA) and the Global Initiative for Chronic Obstructive Lung Disease (GOLD). Methods: This multicenter, cross-sectional, observational study enrolled outpatients who were receiving medical treatment for COPD. Clinical data, including spirometry results, were retrieved from medical records. For symptom assessment, patients were asked to complete the Clinical COPD questionnaire and the modified British Medical Research Council questionnaire. Results: Of the 1,008 patients analyzed, 167 (16.6%) had syndromic features of ACOS. Of the total number of patients, 93 and 42 (9.2% and 4.2%) also had a predefined clinical variability of ≥12%/≥200 mL and ≥12%/≥400 mL in forced expiratory volume in 1 second (FEV1), respectively, and therefore were identified as having ACOS. Conversely, the number of patients who had either syndromic or spirometric feature of ACOS was 595 (59.0%, ≥12%/≥200 mL FEV1 clinical variability), and 328 patients (32.5%, ≥12%/≥400 mL FEV1 clinical variability) had both the features. Patients identified as having ACOS were of significantly younger age, had a shorter duration of COPD, lower number of pack-years, better lung function, milder dyspnea symptoms, and higher peripheral blood eosinophil values compared with patients with COPD alone. The rate of exacerbations in the previous year was not significantly different between the ACOS and COPD groups. Conclusion: Using a stepwise approach, as stated in the GINA/GOLD report, the proportions of patients identified as having ACOS were found to be 9.2% and 4.2% (depending on the FEV1 variability cutoff used) among the 1,008 outpatients medically treated for COPD in a real-life clinical setting. Keywords: obstructive lung diseases, airway hyperresponsiveness, respiratory function tests, differential diagnosis
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- 2017
9. Development of a nomogram for predicting in-hospital mortality of patients with exacerbation of chronic obstructive pulmonary disease
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Sakamoto Y, Yamauchi Y, Yasunaga H, Takeshima H, Hasegawa W, Jo T, Sasabuchi Y, Matsui H, Fushimi K, and Nagase T
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Chronic Obstructive Pulmonary Disease ,Exacerbation ,In-Hospital Mortality ,Nomogram ,Diseases of the respiratory system ,RC705-779 - Abstract
Yukiyo Sakamoto,1 Yasuhiro Yamauchi,1 Hideo Yasunaga,2 Hideyuki Takeshima,1 Wakae Hasegawa,1 Taisuke Jo,1,3 Yusuke Sasabuchi,3 Hiroki Matsui,2 Kiyohide Fushimi,4 Takahide Nagase1 1Department of Respiratory Medicine, Graduate School of Medicine, 2Department of Clinical Epidemiology and Health Economics, School of Public Health, 3Department of Health Services Research, Graduate School of Medicine, University of Tokyo, 4Department of Health Policy and Informatics, Graduate School of Medicine, Tokyo Medical and Dental University, Bunkyo-ku, Tokyo, Japan Background and objectives: Patients with chronic obstructive pulmonary disease (COPD) often experience exacerbations of their disease, sometimes requiring hospital admission and being associated with increased mortality. Although previous studies have reported mortality from exacerbations of COPD, there is limited information about prediction of individual in-hospital mortality. We therefore aimed to use data from a nationwide inpatient database in Japan to generate a nomogram for predicting in-hospital mortality from patients’ characteristics on admission.Methods: We retrospectively collected data on patients with COPD who had been admitted for exacerbations and been discharged between July 1, 2010 and March 31, 2013. We performed multivariable logistic regression analysis to examine factors associated with in-hospital mortality and thereafter used these factors to develop a nomogram for predicting in-hospital prognosis.Results: The study comprised 3,064 eligible patients. In-hospital death occurred in 209 patients (6.8%). Higher mortality was associated with older age, being male, lower body mass index, disturbance of consciousness, severe dyspnea, history of mechanical ventilation, pneumonia, and having no asthma on admission. We developed a nomogram based on these variables to predict in-hospital mortality. The concordance index of the nomogram was 0.775. Internal validation was performed by a bootstrap method with 50 resamples, and calibration plots were found to be well fitted to predict in-hospital mortality.Conclusion: We developed a nomogram for predicting in-hospital mortality of exacerbations of COPD. This nomogram could help clinicians to predict risk of in-hospital mortality in individual patients with COPD exacerbation. Keywords: chronic obstructive pulmonary disease, exacerbation, in-hospital mortality, nomogram
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- 2017
10. Genome Maps 7: The Human Transcript Map
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Jasny, Barbara R., Schuler, G. D., Boguski, M. S., Hudson, T. J., Hui, L., Ma, J., Castle, A. B., Wu, X., Silva, J., Nusbaum, H. C., Birren, B. B., Slonim, D. K., Rozen, S., Stein, L. D., Page, D., Lander, E. S., Stewart, E. A., Aggarwal, A., Bajorek, E., Brady, S., Chu, A., Fang, N., Hadley, D., Harris, M., Hussain, S., Maratukulam, A., Perkins, S., Piercy, M., Qin, F., Reif, T., Sanders, C., She, X., Sun, W. L., Tabar, P., Voyticky, S., Mader, C., McKusick, K. B., Fan, J. B., Cowles, S., Quackenbush, J., Vollrath, D., Myers, R. M., Cox, D. R., Butler, A., Clee, C., Dibling, T., East, C., Edwards, C., Garrett, C., Green, L., Harrison, P., Hicks, A., Holloway, E., Ranby, S., MacGilvery, A., Mungall, A., Peck, A., Wilmer, T., Soderlund, C., Rice, K., Dunham, I., Bentley, D., Deloukas, P., Gyapay, G., Chiannilkulchai, N., Fizames, C., Bentolila, S., Duprat, S., Vega-Czarny, N., Muselet, D., Drouot, N., Morissette, J., Beckmann, J., Weissenbach., J., James, M. R., White, R. E., Thangarajah, T., Day, P. J. R., Goodfellow, P. N., Schmitt, K., Walter, N. A. R., Berry, R., Iorio, K. R., Sikela, J. M., Polymeropoulos, M. H., Torres, R., Ide, S. S. E., Dehejia, A., Houlgatte, R., Auffray, C., Adams, M. D., Phillips, C., Brandon, R., Sandusky, M., Venter, J. C., Seki, N., Nagase, T., Ishikawa, K., Nomura, N., Rodriguez-Tome, P., Matise, T. C., Lee, W. Y., Swanson, K. A., and Hudson, J. R.
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- 1996
11. A Gene Map of the Human Genome
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Schuler, G. D., Boguski, M. S., Stewart, E. A., Stein, L. D., Gyapay, G., Rice, K., White, R. E., Rodriguez-Tomé, P., Aggarwal, A., Bajorek, E., Bentolila, S., Birren, B. B., Butler, A., Castle, A. B., Chiannilkulchai, N., Chu, A., Clee, C., Cowles, S., Day, P. J. R., Dibling, T., Drouot, N., Dunham, I., Duprat, S., East, C., Edwards, C., Fang, N., Fizames, C., Garrett, C., Green, L., Hadley, D., Harris, M., Harrison, P., Brady, S., Hicks, A., Holloway, E., Hui, L., Hussain, S., Ma, J., MacGilvery, A., Mader, C., Maratukulam, A., Matise, T. C., McKusick, K. B., Morissette, J., Mungall, A., Muselet, D., Nusbaum, H. C., Page, D. C., Peck, A., Perkins, S., Piercy, M., Qin, F., Quackenbush, J., Ranby, S., Reif, T., Rozen, S., Sanders, C., She, X., Silva, J., Slonim, D. K., Soderlund, C., Tabar, P., Thangarajah, T., Vega-Czarny, N., Vollrath, D., Voyticky, S., Wilmer, T., Wu, X., Adams, M. D., Aufiray, C., Walter, N. A. R., Brandon, R., Dehejia, A., Goodfellow, P. N., Houlgatte, R., Hudson, J. R., Ide, S. E., Iorio, K. R., Lee, W. Y., Seki, N., Nagase, T., Ishikawa, K., Nomura, N., Phillips, C., Polymeropoulos, M. H., Sandusky, M., Schmitt, K., Berry, R., Swanson, K., Torres, R., Venter, J. C., Sikela, J. M., Beckmann, J. S., Weissenbach, J., Myers, R. M., Cox, D. R., James, M. R., Bentley, D., Deloukas, P., Lander, E. S., and Hudson, T. J.
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- 1996
12. Time‐dependent distinct roles of Toll‐like receptor 4 in a house dust mite‐induced asthma mouse model
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Ishii, T., Niikura, Y., Kurata, K., Muroi, M., Tanamoto, K., Nagase, T., Sakaguchi, M., and Yamashita, N.
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- 2018
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13. Proximal tibiofibular instability treated with cortical suspensory fixation devices--A case report--.
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Iwabuchi, T., Tateishi, T., and Nagase, T.
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We report a rare case of proximal tibiofibular instability treated using TightRope. An 18-year-old male, soccer player, hit his right knee on the ground with the knee in a flexed position during a game. He was diagnosed with a partial PCL injury by his previous doctor and received a conservative treatment. However, he suffered from right knee pain for 3 months after the injury. The Sijbradij test and proximal tibiofibular joint stress X-rays showed a right-side instability, and we diagnosed the patient with proximal tibiofibular joint instability. We performed proximal tibiofibular joint reconstruction using TightRope. The patient could run 2 months postoperatively and returned to the game 6 months postoperatively. Proximal tibiofibular joint instability is rare, and diagnostic criteria and treatment have not been established. Previous reports have suggested that it is associated with radiating pain of the common peroneal nerve and general joint laxity. Joint fixation using metal screws is associated with the risk of screw breakage owing to weight bearing, which necessitates peroneal osteotomy and metal removal. Proximal tibiofibular reconstruction using TightRope is a minimally invasive and effective technique that enables micro-motion, and is similar to physiologic ligament reconstruction. TightRope doesn't require peroneal osteotomy or metal removal. [ABSTRACT FROM AUTHOR]
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- 2023
14. Mortality associated with bone fractures in COPD patients
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Yamauchi Y, Yasunaga H, Sakamoto Y, Hasegawa W, Takeshima H, Urushiyama H, Jo T, Matsui H, Fushimi K, and Nagase T
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COPD ,hip fractures ,in-hospital mortality ,surgical treatment ,Diseases of the respiratory system ,RC705-779 - Abstract
Yasuhiro Yamauchi,1 Hideo Yasunaga,2 Yukiyo Sakamoto,1 Wakae Hasegawa,1 Hideyuki Takeshima,1 Hirokazu Urushiyama,1 Taisuke Jo,1,3 Hiroki Matsui,2 Kiyohide Fushimi,4 Takahide Nagase1 1Department of Respiratory Medicine, Graduate School of Medicine, 2Department of Clinical Epidemiology and Health Economics, School of Public Health, 3Department of Health Services Research, Graduate School of Medicine, The University of Tokyo, 4Department of Health Policy and Informatics, Tokyo Medical and Dental University Graduate School of Medicine, Tokyo, Japan Background and objective: COPD is well known to frequently coexist with osteoporosis. Bone fractures often occur and may affect mortality in COPD patients. However, in-hospital mortality related to bone fractures in COPD patients has been poorly studied. This retrospective study investigated in-hospital mortality of COPD patients with bone fractures using a national inpatient database in Japan.Methods: Data of COPD patients admitted with bone fractures, including hip, vertebra, shoulder, and forearm fractures to 1,165 hospitals in Japan between July 2010 and March 2013, were extracted from the Diagnosis Procedure Combination database. The clinical characteristics and mortalities of the patients were determined. Multivariable logistic regression analysis was also performed to determine the factors associated with in-hospital mortality of COPD patients with hip fractures.Results: Among 5,975 eligible patients, those with hip fractures (n=4,059) were older, had lower body mass index (BMI), and had poorer general condition than those with vertebral (n=1,477), shoulder (n=281), or forearm (n=158) fractures. In-hospital mortality was 7.4%, 5.2%, 3.9%, and 1.3%, respectively. Among the hip fracture group, surgical treatment was significantly associated with lower mortality (adjusted odds ratio, 0.43; 95% confidence interval, 0.32–0.56) after adjustment for patient backgrounds. Higher in-hospital mortality was associated with male sex, lower BMI, lower level of consciousness, and having several comorbidities, including pneumonia, lung cancer, congestive heart failure, chronic liver disease, and chronic renal failure.Conclusion: COPD patients with hip fractures had higher mortality than COPD patients with other types of fracture. Surgery for hip fracture was associated with lower mortality than conservative treatment. Keywords: COPD, hip fractures, in-hospital mortality, surgical treatment
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- 2016
15. Effect of outpatient therapy with inhaled corticosteroids on decreasing in-hospital mortality from pneumonia in patients with COPD
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Yamauchi Y, Yasunaga H, Hasegawa W, Sakamoto Y, Takeshima H, Jo T, Matsui H, Fushimi K, and Nagase T
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Inhaled corticosteroids ,bronchodilators ,in-hospital mortality ,pneumonia ,COPD ,Diseases of the respiratory system ,RC705-779 - Abstract
Yasuhiro Yamauchi,1 Hideo Yasunaga,2 Wakae Hasegawa,1 Yukiyo Sakamoto,1 Hideyuki Takeshima,1 Taisuke Jo,1,3 Hiroki Matsui,2 Kiyohide Fushimi,4 Takahide Nagase1 1Department of Respiratory Medicine, Graduate School of Medicine, 2Department of Clinical Epidemiology and Health Economics, School of Public Health, 3Division for Health Service Promotion, The University of Tokyo, 4Department of Health Policy and Informatics, Tokyo Medical and Dental University Graduate School of Medicine, Tokyo, Japan Background and objectives: Inhaled corticosteroids (ICS) and long-acting inhaled bronchodilators (IBD) are beneficial for the management of COPD. Although ICS has been reported to increase the risk of pneumonia in patients with COPD, it remains controversial whether it influences mortality. Using a Japanese national database, we examined the association between preadmission ICS therapy and in-hospital mortality from pneumonia in patients with COPD. Methods: We retrospectively collected data from 1,165 hospitals in Japan on patients with COPD who received outpatient inhalation therapy and were admitted with pneumonia. Patients were categorized into those who received ICS with IBD and those who received IBD alone. We performed multivariate logistic regression analysis to examine the association between outpatient ICS therapy and in-hospital mortality, adjusting for the patients’ backgrounds. Results: Of the 7,033 eligible patients, the IBD alone group (n=3,331) was more likely to be older, have lower body mass index, poorer general conditions, and more severe pneumonia than the ICS with IBD group (n=3,702). In-hospital mortality was 13.2% and 8.1% in the IBD alone and the ICS with IBD groups, respectively. After adjustment for patients’ backgrounds, the ICS with IBD group had significantly lower mortality than the IBD alone group (adjusted odds ratio, 0.80; 95% confidence interval, 0.68–0.94). Higher mortality was associated with older age, being male, lower body mass index, poorer general status, and more severe pneumonia. Conclusion: Outpatient inhaled ICS and IBD therapy was significantly associated with lower mortality from pneumonia in patients with COPD than treatment with IBD alone. Keywords: inhaled corticosteroids, bronchodilators, in-hospital mortality, pneumonia, COPD
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- 2016
16. Evaluation of an advanced pressure ulcer management protocol followed by trained wound, ostomy, and continence nurses: a non-randomized controlled trial
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Kaitani T, Nakagami G, Sugama J, Tachi M, Matsuyama Y, Miyachi Y, Nagase T, Takemura Y, and Sanada H
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pressure ulcers ,WOCN ,interventions ,protocols ,deep tissue injury ,Medical emergencies. Critical care. Intensive care. First aid ,RC86-88.9 - Abstract
Toshiko Kaitani,1 Gojiro Nakagami,2 Junko Sugama,3 Masahiro Tachi,4 Yutaka Matsuyama,5 Yoshiki Miyachi,6 Takashi Nagase,2 Yukie Takemura,7 Hiromi Sanada2 1School of Nursing, Sapporo City University, Hokkaido, Japan; 2Department of Gerontological Nursing/Wound Care Management, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan; 3Department of Clinical Nursing, Institute of Medical, Pharmaceutical and Health Sciences, Kanazawa University, Kanazawa, Japan; 4Department of Plastic Surgery, Tohoku University Graduate School of Medicine, Miyagi, Japan; 5Department of Biostatistics, School of Public Health, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan; 6Department of Dermatology, Kyoto University Graduate School of Medicine, Kyoto, Japan; 7Department of Nursing, Research Hospital, The Institute of Medical Science, The University of Tokyo, Tokyo, Japan Aims and objectives: We investigated the effectiveness and safety of an advanced pressure ulcer (PU) management protocol comprising 1) ultrasonography to assess the deep tissue, 2) use of a non-contact thermometer to detect critical colonization, 3) conservative sharp debridement, 4) dressing selection, 5) negative pressure wound therapy, and 6) vibration therapy in comparison with those of a conventional approach. Each protocol was followed by trained wound, ostomy, and continence nurses (WOCNs). Background: At present, there is no systematic PU management protocol for nurses that includes appropriate assessment and intervention techniques for deep tissue injury and critical colonization. In Japan, there is no such protocol that the nurses can follow without a physician’s orders. Design and methods: This was a prospective non-randomized controlled trial. Over a 3-week period, we evaluated the effectiveness of an advanced protocol by comparing the PU severity and healing on the basis of the DESIGN-R scale and presence of patients' discomfort. We recruited ten WOCNs to follow the advanced protocol and 19 others as controls. Statistical analysis included a linear mixed-effects model and a logistic regression model. Results: In week 0–1, the advanced protocol was significantly associated with prevention of PU deterioration. Using the linear mixed-effects model, we observed a greater decrease in the DESIGN-R score (healing) in the advanced protocol group. There were no reports of excessive bleeding, pain or infection with the advanced protocol. Conclusion: Using the advanced protocol, WOCNs detected PU severity, assessed PUs, and treated PUs safely. This protocol prevented PU deterioration and/or facilitated wound healing. Relevance to clinical practice: With proper training, WOCNs can assess and treat PUs safer and quicker than when a physician's assessment is required, leading to an improvement in wound healing and prevention of PU deterioration. Keywords: pressure ulcers, WOCN, interventions, protocols, deep tissue injury
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- 2015
17. Paradoxical association between body mass index and in-hospital mortality in elderly patients with chronic obstructive pulmonary disease in Japan
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Yamauchi Y, Hasegawa W, Yasunaga H, Sunohara M, Jo T, Takami K, Matsui H, Fushimi K, and Nagase T
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Diseases of the respiratory system ,RC705-779 - Abstract
Yasuhiro Yamauchi,1,2 Wakae Hasegawa,1 Hideo Yasunaga,3 Mitsuhiro Sunohara,1 Taisuke Jo,1,2 Kazutaka Takami,1 Hiroki Matsui,3 Kiyohide Fushimi,4 Takahide Nagase1 1Department of Respiratory Medicine, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan; 2Division for Health Service Promotion, The University of Tokyo, Tokyo, Japan; 3Department of Clinical Epidemiology and Health Economics, School of Public Health, The University of Tokyo, Tokyo, Japan; 4Department of Health Policy and Informatics, Tokyo Medical and Dental University, Graduate School of Medicine, Tokyo, Japan Background and objective: The prevalence and mortality of chronic obstructive pulmonary disease (COPD) in elderly patients are increasing worldwide. Low body mass index (BMI) is a well-known prognostic factor for COPD. However, the obesity paradox in elderly patients with COPD has not been well elucidated. We investigated the association between BMI and in-hospital mortality in elderly COPD patients. Methods: Using the Diagnosis Procedure Combination database in Japan, we retrospectively collected data for elderly patients (>65 years) with COPD who were hospitalized between July 2010 and March 2013. We performed multivariable logistic regression analysis to compare all-cause in-hospital mortality between patients with BMI of
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- 2014
18. Phase transition of sigma-CrFe under fast electron irradiation
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Nagase, T., Anada, S., Kobayashi, K., Yasuda, H., and Mori, H.
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- 2015
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19. Self-shielding effect of a single phase liquid xenon detector for direct dark matter search
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Minamino, A., Abe, K., Ashie, Y., Hosaka, J., Ishihara, K., Kobayashi, K., Koshio, Y., Mitsuda, C., Moriyama, S., Nakahata, M., Nakajima, Y., Namba, T., Ogawa, H., Sekiya, H., Shiozawa, M., Suzuki, Y., Takeda, A., Takeuchi, Y., Taki, K., Ueshima, K., Ebizuka, Y., Ota, A., Suzuki, S., Hagiwara, H., Hashimoto, Y., Kamada, S., Kikuchi, M., Kobayashi, N., Nagase, T., Nakamura, S., Tomita, K., Uchida, Y., Fukuda, Y., Sato, T., Nishijima, K., Maruyama, T., Motoki, D., Itow, Y., Kim, Y.D., Lee, J.I., Moon, S.H., Lim, K.E., Cravens, J.P., and Smy, M.B.
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- 2012
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20. Irradiation-induced ordering in Pt-Cu alloy focusing on Pt7Cu
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Nagase, T., Seno, Y., Yasuda, H., and Mori, H.
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- 2014
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21. Ultra High Voltage Electron Microscopy Study of {113}-Defect Generation in Si Nanowires
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Vanhellemont, J., Anada, S., Nagase, T., Yasuda, H., Bender, H., Rooyackers, R., and Vandooren, A.
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- 2014
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22. Dynamic change in respiratory resistance during inspiratory and expiratory phases of tidal breathing in patients with chronic obstructive pulmonary disease
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Nagase T, Jo T, Yamauchi Y, and Kohyama T
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Diseases of the respiratory system ,RC705-779 - Abstract
Yasuhiro Yamauchi1,2, Tadashi Kohyama2, Taisuke Jo2, Takahide Nagase21Division of Health Promotion Center, 2Department of Respiratory Medicine, University of Tokyo, Tokyo, JapanBackground and objective: Chronic obstructive pulmonary disease (COPD) is characterized by persistent airflow limitation consisting of airway obstruction and parenchymal emphysema, with loss of elastic recoil. The forced oscillation technique can detect impairment of lung function by measuring lung impedance during normal tidal breathing. Respiratory resistance (Rrs) in COPD has been well-studied, but the differences in Rrs in the inspiratory and expiratory phases between mild and moderate COPD remain poorly understood. Since airway obstruction in COPD is known to change dynamically during tidal breathing and might affect Rrs, the differences in Rrs during tidal breathing between mild and moderate COPD were evaluated.Methods: Mild (n = 13) and moderate (n = 13) COPD patients were recruited at Tokyo University Hospital (Tokyo, Japan). Rrs was measured using MostGraph-01 (Chest MI, Inc, Tokyo, Japan), which depicted Rrs in a frequency- and respiratory cycle-dependent manner in three-dimensional graphics. Rrs was evaluated at 4–35 Hz during tidal breathing.Results: Rrs changed dynamically during tidal breathing in COPD. The mean Rrs values were significantly greater in the moderate COPD group than in the mild group. The maximal and minimal Rrs values at higher frequencies in the respiratory cycle were significantly greater in moderate COPD. In inspiratory–expiratory breath analysis, the maximal and minimal Rrs values at 20 Hz and 35 Hz were significantly greater in the moderate group, whereas at 4 Hz they did not differ significantly between the groups.Conclusion: Rrs changed dynamically during tidal breathing in patients with COPD. The Rrs values at higher frequencies were greater in moderate COPD than in mild COPD. Rrs at higher frequencies might reflect the degree of airway obstruction in tidal breathing in patients with COPD and might be a useful marker for evaluation of airway obstruction at an early stage of COPD.Keywords: COPD, airflow limitation, respiratory resistance, forced oscillation technique
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- 2012
23. Effects of supplemental β-carotene with whey on IgA transfer from maternal milk and mucosal IgA induction in neonatal mice and calves
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Nishiyama, Y., Yasumatsuya, K., Kasai, K., Sakase, M., Nishino, O., Akaike, M., Nagase, T., Sugimoto, M., Ikeda, S., and Kume, S.
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- 2011
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24. Effect of Ni-addition on the crystallization behavior and the oxidation resistance of Zr-based metallic glasses below the crystallization temperature
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Wu, Y., Song, G.M., Nagase, T., and Umakoshi, Y.
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- 2011
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25. Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network
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Grapotte M., Saraswat M., Bessiere C., Menichelli C., Ramilowski J. A., Severin J., Hayashizaki Y., Itoh M., Tagami M., Murata M., Kojima-Ishiyama M., Noma S., Noguchi S., Kasukawa T., Hasegawa A., Suzuki H., Nishiyori-Sueki H., Frith M. C., Abugessaisa I., Aitken S., Aken B. L., Alam I., Alam T., Alasiri R., Alhendi A. M. N., Alinejad-Rokny H., Alvarez M. J., Andersson R., Arakawa T., Araki M., Arbel T., Archer J., Archibald A. L., Arner E., Arner P., Asai K., Ashoor H., Astrom G., Babina M., Baillie J. K., Bajic V. B., Bajpai A., Baker S., Baldarelli R. M., Balic A., Bansal M., Batagov A. O., Batzoglou S., Beckhouse A. G., Beltrami A. P., Beltrami C. A., Bertin N., Bhattacharya S., Bickel P. J., Blake J. A., Blanchette M., Bodega B., Bonetti A., Bono H., Bornholdt J., Bttcher M., Bougouffa S., Boyd M., Breda J., Brombacher F., Brown J. B., Bult C. J., Burroughs A. M., Burt D. W., Busch A., Caglio G., Califano A., Cameron C. J., Cannistraci C. V., Carbone A., Carlisle A. J., Carninci P., Carter K. W., Cesselli D., Chang J. -C., Chen J. C., Chen Y., Chierici M., Christodoulou J., Ciani Y., Clark E. L., Coskun M., Dalby M., Dalla E., Daub C. O., Davis C. A., de Hoon M. J. L., de Rie D., Denisenko E., Deplancke B., Detmar M., Deviatiiarov R., Di Bernardo D., Diehl A. D., Dieterich L. C., Dimont E., Djebali S., Dohi T., Dostie J., Drablos F., Edge A. S. B., Edinger M., Ehrlund A., Ekwall K., Elofsson A., Endoh M., Enomoto H., Enomoto S., Faghihi M., Fagiolini M., Farach-Carson M. C., Faulkner G. J., Favorov A., Fernandes A. M., Ferrai C., Forrest A. R. R., Forrester L. M., Forsberg M., Fort A., Francescatto M., Freeman T. C., Frith M., Fukuda S., Funayama M., Furlanello C., Furuno M., Furusawa C., Gao H., Gazova I., Gebhard C., Geier F., Geijtenbeek T. B. H., Ghosh S., Ghosheh Y., Gingeras T. R., Gojobori T., Goldberg T., Goldowitz D., Gough J., Greco D., Gruber A. J., Guhl S., Guigo R., Guler R., Gusev O., Gustincich S., Ha T. J., Haberle V., Hale P., Hallstrom B. M., Hamada M., Handoko L., Hara M., Harbers M., Harrow J., Harshbarger J., Hase T., Hashimoto K., Hatano T., Hattori N., Hayashi R., Herlyn M., Hettne K., Heutink P., Hide W., Hitchens K. J., Sui S. H., 't Hoen P. A. C., Hon C. C., Hori F., Horie M., Horimoto K., Horton P., Hou R., Huang E., Huang Y., Hugues R., Hume D., Ienasescu H., Iida K., Ikawa T., Ikemura T., Ikeo K., Inoue N., Ishizu Y., Ito Y., Ivshina A. V., Jankovic B. R., Jenjaroenpun P., Johnson R., Jorgensen M., Jorjani H., Joshi A., Jurman G., Kaczkowski B., Kai C., Kaida K., Kajiyama K., Kaliyaperumal R., Kaminuma E., Kanaya T., Kaneda H., Kapranov P., Kasianov A. S., Katayama T., Kato S., Kawaguchi S., Kawai J., Kawaji H., Kawamoto H., Kawamura Y. I., Kawasaki S., Kawashima T., Kempfle J. S., Kenna T. J., Kere J., Khachigian L., Kiryu H., Kishima M., Kitajima H., Kitamura T., Kitano H., Klaric E., Klepper K., Klinken S. P., Kloppmann E., Knox A. J., Kodama Y., Kogo Y., Kojima M., Kojima S., Komatsu N., Komiyama H., Kono T., Koseki H., Koyasu S., Kratz A., Kukalev A., Kulakovskiy I., Kundaje A., Kunikata H., Kuo R., Kuo T., Kuraku S., Kuznetsov V. A., Kwon T. J., Larouche M., Lassmann T., Law A., Le-Cao K. -A., Lecellier C. -H., Lee W., Lenhard B., Lennartsson A., Li K., Li R., Lilje B., Lipovich L., Lizio M., Lopez G., Magi S., Mak G. K., Makeev V., Manabe R., Mandai M., Mar J., Maruyama K., Maruyama T., Mason E., Mathelier A., Matsuda H., Medvedeva Y. A., Meehan T. F., Mejhert N., Meynert A., Mikami N., Minoda A., Miura H., Miyagi Y., Miyawaki A., Mizuno Y., Morikawa H., Morimoto M., Morioka M., Morishita S., Moro K., Motakis E., Motohashi H., Mukarram A. K., Mummery C. L., Mungall C. J., Murakawa Y., Muramatsu M., Nagasaka K., Nagase T., Nakachi Y., Nakahara F., Nakai K., Nakamura K., Nakamura Y., Nakazawa T., Nason G. P., Nepal C., Nguyen Q. H., Nielsen L. K., Nishida K., Nishiguchi K. M., Nishiyori H., Nitta K., Notredame C., Ogishima S., Ohkura N., Ohno H., Ohshima M., Ohtsu T., Okada Y., Okada-Hatakeyama M., Okazaki Y., Oksvold P., Orlando V., Ow G. S., Ozturk M., Pachkov M., Paparountas T., Parihar S. P., Park S. -J., Pascarella G., Passier R., Persson H., Philippens I. H., Piazza S., Plessy C., Pombo A., Ponten F., Poulain S., Poulsen T. M., Pradhan S., Prezioso C., Pridans C., Qin X. -Y., Quackenbush J., Rackham O., Ramilowski J., Ravasi T., Rehli M., Rennie S., Rito T., Rizzu P., Robert C., Roos M., Rost B., Roudnicky F., Roy R., Rye M. B., Sachenkova O., Saetrom P., Sai H., Saiki S., Saito M., Saito A., Sakaguchi S., Sakai M., Sakaue S., Sakaue-Sawano A., Sandelin A., Sano H., Sasamoto Y., Sato H., Saxena A., Saya H., Schafferhans A., Schmeier S., Schmidl C., Schmocker D., Schneider C., Schueler M., Schultes E. A., Schulze-Tanzil G., Semple C. A., Seno S., Seo W., Sese J., Sheng G., Shi J., Shimoni Y., Shin J. W., SimonSanchez J., Sivertsson A., Sjostedt E., Soderhall C., Laurent G. S., Stoiber M. H., Sugiyama D., Summers K. M., Suzuki A. M., Suzuki K., Suzuki M., Suzuki N., Suzuki T., Swanson D. J., Swoboda R. K., Taguchi A., Takahashi H., Takahashi M., Takamochi K., Takeda S., Takenaka Y., Tam K. T., Tanaka H., Tanaka R., Tanaka Y., Tang D., Taniuchi I., Tanzer A., Tarui H., Taylor M. S., Terada A., Terao Y., Testa A. C., Thomas M., Thongjuea S., Tomii K., Triglia E. T., Toyoda H., Tsang H. G., Tsujikawa M., Uhlen M., Valen E., van de Wetering M., van Nimwegen E., Velmeshev D., Verardo R., Vitezic M., Vitting-Seerup K., von Feilitzen K., Voolstra C. R., Vorontsov I. E., Wahlestedt C., Wasserman W. W., Watanabe K., Watanabe S., Wells C. A., Winteringham L. N., Wolvetang E., Yabukami H., Yagi K., Yamada T., Yamaguchi Y., Yamamoto M., Yamamoto Y., Yamanaka Y., Yano K., Yasuzawa K., Yatsuka Y., Yo M., Yokokura S., Yoneda M., Yoshida E., Yoshida Y., Yoshihara M., Young R., Young R. S., Yu N. Y., Yumoto N., Zabierowski S. E., Zhang P. G., Zucchelli S., Zwahlen M., Chatelain C., Brehelin L., Grapotte, M., Saraswat, M., Bessiere, C., Menichelli, C., Ramilowski, J. A., Severin, J., Hayashizaki, Y., Itoh, M., Tagami, M., Murata, M., Kojima-Ishiyama, M., Noma, S., Noguchi, S., Kasukawa, T., Hasegawa, A., Suzuki, H., Nishiyori-Sueki, H., Frith, M. C., Abugessaisa, I., Aitken, S., Aken, B. L., Alam, I., Alam, T., Alasiri, R., Alhendi, A. M. N., Alinejad-Rokny, H., Alvarez, M. J., Andersson, R., Arakawa, T., Araki, M., Arbel, T., Archer, J., Archibald, A. L., Arner, E., Arner, P., Asai, K., Ashoor, H., Astrom, G., Babina, M., Baillie, J. K., Bajic, V. B., Bajpai, A., Baker, S., Baldarelli, R. M., Balic, A., Bansal, M., Batagov, A. O., Batzoglou, S., Beckhouse, A. G., Beltrami, A. P., Beltrami, C. A., Bertin, N., Bhattacharya, S., Bickel, P. J., Blake, J. A., Blanchette, M., Bodega, B., Bonetti, A., Bono, H., Bornholdt, J., Bttcher, M., Bougouffa, S., Boyd, M., Breda, J., Brombacher, F., Brown, J. B., Bult, C. J., Burroughs, A. M., Burt, D. W., Busch, A., Caglio, G., Califano, A., Cameron, C. J., Cannistraci, C. V., Carbone, A., Carlisle, A. J., Carninci, P., Carter, K. W., Cesselli, D., Chang, J. -C., Chen, J. C., Chen, Y., Chierici, M., Christodoulou, J., Ciani, Y., Clark, E. L., Coskun, M., Dalby, M., Dalla, E., Daub, C. O., Davis, C. A., de Hoon, M. J. L., de Rie, D., Denisenko, E., Deplancke, B., Detmar, M., Deviatiiarov, R., Di Bernardo, D., Diehl, A. D., Dieterich, L. C., Dimont, E., Djebali, S., Dohi, T., Dostie, J., Drablos, F., Edge, A. S. B., Edinger, M., Ehrlund, A., Ekwall, K., Elofsson, A., Endoh, M., Enomoto, H., Enomoto, S., Faghihi, M., Fagiolini, M., Farach-Carson, M. C., Faulkner, G. J., Favorov, A., Fernandes, A. M., Ferrai, C., Forrest, A. R. R., Forrester, L. M., Forsberg, M., Fort, A., Francescatto, M., Freeman, T. C., Frith, M., Fukuda, S., Funayama, M., Furlanello, C., Furuno, M., Furusawa, C., Gao, H., Gazova, I., Gebhard, C., Geier, F., Geijtenbeek, T. B. H., Ghosh, S., Ghosheh, Y., Gingeras, T. R., Gojobori, T., Goldberg, T., Goldowitz, D., Gough, J., Greco, D., Gruber, A. J., Guhl, S., Guigo, R., Guler, R., Gusev, O., Gustincich, S., Ha, T. J., Haberle, V., Hale, P., Hallstrom, B. M., Hamada, M., Handoko, L., Hara, M., Harbers, M., Harrow, J., Harshbarger, J., Hase, T., Hashimoto, K., Hatano, T., Hattori, N., Hayashi, R., Herlyn, M., Hettne, K., Heutink, P., Hide, W., Hitchens, K. J., Sui, S. H., 't Hoen, P. A. C., Hon, C. C., Hori, F., Horie, M., Horimoto, K., Horton, P., Hou, R., Huang, E., Huang, Y., Hugues, R., Hume, D., Ienasescu, H., Iida, K., Ikawa, T., Ikemura, T., Ikeo, K., Inoue, N., Ishizu, Y., Ito, Y., Ivshina, A. V., Jankovic, B. R., Jenjaroenpun, P., Johnson, R., Jorgensen, M., Jorjani, H., Joshi, A., Jurman, G., Kaczkowski, B., Kai, C., Kaida, K., Kajiyama, K., Kaliyaperumal, R., Kaminuma, E., Kanaya, T., Kaneda, H., Kapranov, P., Kasianov, A. S., Katayama, T., Kato, S., Kawaguchi, S., Kawai, J., Kawaji, H., Kawamoto, H., Kawamura, Y. I., Kawasaki, S., Kawashima, T., Kempfle, J. S., Kenna, T. J., Kere, J., Khachigian, L., Kiryu, H., Kishima, M., Kitajima, H., Kitamura, T., Kitano, H., Klaric, E., Klepper, K., Klinken, S. P., Kloppmann, E., Knox, A. J., Kodama, Y., Kogo, Y., Kojima, M., Kojima, S., Komatsu, N., Komiyama, H., Kono, T., Koseki, H., Koyasu, S., Kratz, A., Kukalev, A., Kulakovskiy, I., Kundaje, A., Kunikata, H., Kuo, R., Kuo, T., Kuraku, S., Kuznetsov, V. A., Kwon, T. J., Larouche, M., Lassmann, T., Law, A., Le-Cao, K. -A., Lecellier, C. -H., Lee, W., Lenhard, B., Lennartsson, A., Li, K., Li, R., Lilje, B., Lipovich, L., Lizio, M., Lopez, G., Magi, S., Mak, G. K., Makeev, V., Manabe, R., Mandai, M., Mar, J., Maruyama, K., Maruyama, T., Mason, E., Mathelier, A., Matsuda, H., Medvedeva, Y. A., Meehan, T. F., Mejhert, N., Meynert, A., Mikami, N., Minoda, A., Miura, H., Miyagi, Y., Miyawaki, A., Mizuno, Y., Morikawa, H., Morimoto, M., Morioka, M., Morishita, S., Moro, K., Motakis, E., Motohashi, H., Mukarram, A. K., Mummery, C. L., Mungall, C. J., Murakawa, Y., Muramatsu, M., Nagasaka, K., Nagase, T., Nakachi, Y., Nakahara, F., Nakai, K., Nakamura, K., Nakamura, Y., Nakazawa, T., Nason, G. P., Nepal, C., Nguyen, Q. H., Nielsen, L. K., Nishida, K., Nishiguchi, K. M., Nishiyori, H., Nitta, K., Notredame, C., Ogishima, S., Ohkura, N., Ohno, H., Ohshima, M., Ohtsu, T., Okada, Y., Okada-Hatakeyama, M., Okazaki, Y., Oksvold, P., Orlando, V., Ow, G. S., Ozturk, M., Pachkov, M., Paparountas, T., Parihar, S. P., Park, S. -J., Pascarella, G., Passier, R., Persson, H., Philippens, I. H., Piazza, S., Plessy, C., Pombo, A., Ponten, F., Poulain, S., Poulsen, T. M., Pradhan, S., Prezioso, C., Pridans, C., Qin, X. -Y., Quackenbush, J., Rackham, O., Ramilowski, J., Ravasi, T., Rehli, M., Rennie, S., Rito, T., Rizzu, P., Robert, C., Roos, M., Rost, B., Roudnicky, F., Roy, R., Rye, M. B., Sachenkova, O., Saetrom, P., Sai, H., Saiki, S., Saito, M., Saito, A., Sakaguchi, S., Sakai, M., Sakaue, S., Sakaue-Sawano, A., Sandelin, A., Sano, H., Sasamoto, Y., Sato, H., Saxena, A., Saya, H., Schafferhans, A., Schmeier, S., Schmidl, C., Schmocker, D., Schneider, C., Schueler, M., Schultes, E. A., Schulze-Tanzil, G., Semple, C. A., Seno, S., Seo, W., Sese, J., Sheng, G., Shi, J., Shimoni, Y., Shin, J. W., Simonsanchez, J., Sivertsson, A., Sjostedt, E., Soderhall, C., Laurent, G. S., Stoiber, M. H., Sugiyama, D., Summers, K. M., Suzuki, A. M., Suzuki, K., Suzuki, M., Suzuki, N., Suzuki, T., Swanson, D. J., Swoboda, R. K., Taguchi, A., Takahashi, H., Takahashi, M., Takamochi, K., Takeda, S., Takenaka, Y., Tam, K. T., Tanaka, H., Tanaka, R., Tanaka, Y., Tang, D., Taniuchi, I., Tanzer, A., Tarui, H., Taylor, M. S., Terada, A., Terao, Y., Testa, A. C., Thomas, M., Thongjuea, S., Tomii, K., Triglia, E. T., Toyoda, H., Tsang, H. G., Tsujikawa, M., Uhlen, M., Valen, E., van de Wetering, M., van Nimwegen, E., Velmeshev, D., Verardo, R., Vitezic, M., Vitting-Seerup, K., von Feilitzen, K., Voolstra, C. R., Vorontsov, I. E., Wahlestedt, C., Wasserman, W. W., Watanabe, K., Watanabe, S., Wells, C. A., Winteringham, L. N., Wolvetang, E., Yabukami, H., Yagi, K., Yamada, T., Yamaguchi, Y., Yamamoto, M., Yamamoto, Y., Yamanaka, Y., Yano, K., Yasuzawa, K., Yatsuka, Y., Yo, M., Yokokura, S., Yoneda, M., Yoshida, E., Yoshida, Y., Yoshihara, M., Young, R., Young, R. S., Yu, N. Y., Yumoto, N., Zabierowski, S. E., Zhang, P. G., Zucchelli, S., Zwahlen, M., Chatelain, C., Brehelin, L., Institute of Biotechnology, Biosciences, Institut de Génétique Moléculaire de Montpellier (IGMM), Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS), Institut de Biologie Computationnelle (IBC), Institut National de Recherche en Informatique et en Automatique (Inria)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Méthodes et Algorithmes pour la Bioinformatique (MAB), Laboratoire d'Informatique de Robotique et de Microélectronique de Montpellier (LIRMM), Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS), RIKEN Center for Integrative Medical Sciences [Yokohama] (RIKEN IMS), RIKEN - Institute of Physical and Chemical Research [Japon] (RIKEN), National Institute of Advanced Industrial Science and Technology (AIST), SANOFI Recherche, University of British Columbia (UBC), Experimental Immunology, Infectious diseases, AII - Infectious diseases, Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM), Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM), and Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut National de Recherche en Informatique et en Automatique (Inria)-Université de Montpellier (UM)
- Subjects
0301 basic medicine ,General Physics and Astronomy ,Genome ,Mice ,0302 clinical medicine ,Transcription (biology) ,Promoter Regions, Genetic ,Transcription Initiation, Genetic ,0303 health sciences ,Multidisciplinary ,1184 Genetics, developmental biology, physiology ,High-Throughput Nucleotide Sequencing ,Neurodegenerative Diseases ,222 Other engineering and technologies ,Genomics ,[SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM] ,humanities ,Enhancer Elements, Genetic ,Microsatellite Repeat ,Transcription Initiation Site ,Sequence motif ,Transcription Initiation ,Human ,Enhancer Elements ,Neural Networks ,Science ,610 Medicine & health ,Computational biology ,Biology ,Article ,General Biochemistry, Genetics and Molecular Biology ,Promoter Regions ,03 medical and health sciences ,Computer ,Deep Learning ,Tandem repeat ,Genetic ,Clinical Research ,[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN] ,Machine learning ,Genetics ,Animals ,Humans ,Polymorphism ,Enhancer ,Transcriptomics ,Gene ,A549 Cell ,030304 developmental biology ,Polymorphism, Genetic ,Neurodegenerative Disease ,Base Sequence ,Animal ,Genome, Human ,Human Genome ,Computational Biology ,Promoter ,General Chemistry ,113 Computer and information sciences ,Cap analysis gene expression ,030104 developmental biology ,[SDV.GEN.GH]Life Sciences [q-bio]/Genetics/Human genetics ,Cardiovascular and Metabolic Diseases ,A549 Cells ,Minion ,Generic health relevance ,3111 Biomedicine ,Neural Networks, Computer ,610 Medizin und Gesundheit ,030217 neurology & neurosurgery ,FANTOM consortium ,Microsatellite Repeats - Abstract
Using the Cap Analysis of Gene Expression (CAGE) technology, the FANTOM5 consortium provided one of the most comprehensive maps of transcription start sites (TSSs) in several species. Strikingly, ~72% of them could not be assigned to a specific gene and initiate at unconventional regions, outside promoters or enhancers. Here, we probe these unassigned TSSs and show that, in all species studied, a significant fraction of CAGE peaks initiate at microsatellites, also called short tandem repeats (STRs). To confirm this transcription, we develop Cap Trap RNA-seq, a technology which combines cap trapping and long read MinION sequencing. We train sequence-based deep learning models able to predict CAGE signal at STRs with high accuracy. These models unveil the importance of STR surrounding sequences not only to distinguish STR classes, but also to predict the level of transcription initiation. Importantly, genetic variants linked to human diseases are preferentially found at STRs with high transcription initiation level, supporting the biological and clinical relevance of transcription initiation at STRs. Together, our results extend the repertoire of non-coding transcription associated with DNA tandem repeats and complexify STR polymorphism., Nature Communications, 12 (1), ISSN:2041-1723
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- 2020
26. Preparation, characterization, and dehydration performance of MER-type zeolite membranes
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Hasegawa, Y., Nagase, T., Kiyozumi, Y., and Mizukami, F.
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- 2010
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27. Appell’s lemma and conservation laws of KdV equation
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Yamamoto, Y., Nagase, T., and Ohmiya, M.
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- 2010
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28. Formation of high flux CHA-type zeolite membranes and their application to the dehydration of alcohol solutions
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Hasegawa, Y., Abe, C., Nishioka, M., Sato, K., Nagase, T., and Hanaoka, T.
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- 2010
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29. Influence of synthesis gel composition on morphology, composition, and dehydration performance of CHA-type zeolite membranes
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Hasegawa, Y., Abe, C., Nishioka, M., Sato, K., Nagase, T., and Hanaoka, T.
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- 2010
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30. Influence of acid on the permeation properties of NaA-type zeolite membranes
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Hasegawa, Y., Nagase, T., Kiyozumi, Y., Hanaoka, T., and Mizukami, F.
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- 2010
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31. Preparation of novel chabazite (CHA)-type zeolite layer on porous α-Al 2O 3 tube using template-free solution
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Hasegawa, Y., Hotta, H., Sato, K., Nagase, T., and Mizukami, F.
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- 2010
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32. Improvement of green cathodoluminescence of zinc oxide stacked films prepared by high-power excimer laser irradiation of sol–gel-derived precursors
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Nagase, T., Kominami, H., Nakanishi, Y., Shinozaki, K., and Mizutani, N.
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- 2010
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33. Factors that predict in-hospital mortality in eosinophilic granulomatosis with polyangiitis
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Hasegawa, W., Yamauchi, Y., Yasunaga, H., Sunohara, M., Jo, T., Matsui, H., Fushimi, K., Takami, K., and Nagase, T.
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- 2015
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34. An effect of the seed species on the PV performance of the secondary synthesized MER zeolite membranes
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Nagase, T., Kiyozumi, Y., Nemoto, Y., Hirano, N., Hasegawa, Y., Ikeda, T., Inoue, T., Nishide, T., and Mizukami, F.
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- 2009
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35. Electron irradiation-induced nanocrystallization of amorphous Fe 85B 15 alloy: Evidence for athermal nature
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Qin, W., Nagase, T., and Umakoshi, Y.
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- 2009
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36. Distillation of liquid xenon to remove krypton
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Abe, K., Hosaka, J., Iida, T., Ikeda, M., Kobayashi, K., Koshio, Y., Minamino, A., Miura, M., Moriyama, S., Nakahata, M., Nakajima, Y., Namba, T., Ogawa, H., Sekiya, H., Shiozawa, M., Suzuki, Y., Takeda, A., Takeuchi, Y., Ueshima, K., Yamashita, M., Kaneyuki, K., Ebizuka, Y., Kikuchi, J., Ota, A., Suzuki, S., Takahashi, T., Hagiwara, H., Kamei, T., Miyamoto, K., Nagase, T., Nakamura, S., Ozaki, Y., Sato, T., Fukuda, Y., Nishijima, K., Sakurai, M., Maruyama, T., Motoki, D., Itow, Y., Ohsumi, H., Tasaka, S., Kim, S.B., Kim, Y.D., Lee, J.I., Moon, S.H., Urakawa, Y., Uchino, M., and Kamioka, Y.
- Published
- 2009
- Full Text
- View/download PDF
37. The Association of Endoscopic Reflux Esophagitis and Obesity with Respiratory Function in Non-Smokers: A Retrospective Cohort Study of 3,682 Healthy Non-Smoking Subjects in Japan
- Author
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Enokido, T., primary, Hiraishi, Y., additional, Matsuzaki, H., additional, Urushiyama, H., additional, Minatsuki, C., additional, Shimamoto, T., additional, Nagase, T., additional, and Yamamichi, N., additional
- Published
- 2021
- Full Text
- View/download PDF
38. In situ TEM observations of irradiation-induced phase change in tungsten
- Author
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Chen, C. L., Nagase, T., and Mori, H.
- Published
- 2009
- Full Text
- View/download PDF
39. A second-generation profiling system for quantitative methylation analysis of multiple gene promoters: application to lung cancer
- Author
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Sano, A, Kage, H, Sugimoto, K, Kitagawa, H, Aki, N, Goto, A, Fukayama, M, Nakajima, J, Takamoto, S, Nagase, T, Yatomi, Y, Ohishi, N, and Takai, D
- Published
- 2007
- Full Text
- View/download PDF
40. H3K9me maintenance on a Human Artificial Chromosome is required for 3 segregation but not centromere epigenetic memory
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Martins, N. M. C., Cisneros-Soberanis, F., Pesenti, E., Kochanova, N. Y., Shang, W. H., Hori, T., Nagase, T., Kimura, Hiroshi, Larionov, V., Masumoto, H., Fukagawa, T., and Earnshaw, W. C.
- Subjects
Jumonji Domain-Containing Histone Demethylases ,Mitosis ,Human artificial chromosome ,Epigenetic engineering ,Centromere ,Epigenesis, Genetic ,Histones ,0302 clinical medicine ,Chromosome Segregation ,Heterochromatin ,Kinetochores ,0303 health sciences ,Kinetochore ,Polycomb ,Cell biology ,Chromatin ,kinetochore ,centromere ,CENP-A ,Research Article ,human artificial chromosome ,Biology ,Chromosomes, Artificial, Human ,03 medical and health sciences ,Humans ,Epigenetics ,030304 developmental biology ,mitosis ,heterochromatin ,Cell Biology ,epigenetic engineering ,Cenp-a ,biology.protein ,Demethylase ,polycomb ,Centromere Protein A ,030217 neurology & neurosurgery - Abstract
Most eukaryotic centromeres are located within heterochromatic regions. Paradoxically, heterochromatin can also antagonize de novo centromere formation, and some centromeres lack it altogether. In order to investigate the importance of heterochromatin at centromeres, we used epigenetic engineering of a synthetic alphoidtetO human artificial chromosome (HAC), to which chimeric proteins can be targeted. By tethering the JMJD2D demethylase (also known as KDM4D), we removed heterochromatin mark H3K9me3 (histone 3 lysine 9 trimethylation) specifically from the HAC centromere. This caused no short-term defects, but long-term tethering reduced HAC centromere protein levels and triggered HAC mis-segregation. However, centromeric CENP-A was maintained at a reduced level. Furthermore, HAC centromere function was compatible with an alternative low-H3K9me3, high-H3K27me3 chromatin signature, as long as residual levels of H3K9me3 remained. When JMJD2D was released from the HAC, H3K9me3 levels recovered over several days back to initial levels along with CENP-A and CENP-C centromere levels, and mitotic segregation fidelity. Our results suggest that a minimal level of heterochromatin is required to stabilize mitotic centromere function but not for maintaining centromere epigenetic memory, and that a homeostatic pathway maintains heterochromatin at centromeres. This article has an associated First Person interview with the first authors of the paper., Summary: Pericentric heterochromatin is dispensable for centromere epigenetic memory, but is required to stabilize centromere protein levels and accurate mitotic segregation. Pericentric heterochromatin levels can also recover after severe depletion.
- Published
- 2020
41. CENP-B creates alternative epigenetic chromatin states permissive for CENP-A or heterochromatin assembly
- Author
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Otake, K., Ohzeki, J. I., Shono, N., Kugou, K., Okazaki, K., Nagase, T., Yamakawa, H., Kouprina, N., Larionov, V., Kimura, Hiroshi, Earnshaw, W. C., and Masumoto, H.
- Subjects
ASH1L ,Alternative epigenetic states ,Chromosomal Proteins, Non-Histone ,Satellite DNA ,Heterochromatin ,Centromere ,macromolecular substances ,Biology ,Autoantigens ,Hp1 ,Epigenesis, Genetic ,03 medical and health sciences ,0302 clinical medicine ,Humans ,Nucleosome ,Heterochromatin assembly ,Ash1l ,030304 developmental biology ,ASH1l ,0303 health sciences ,HP1 ,alternative epigenetic states ,Acidic-rich domain ,Cell Biology ,Chromatin ,Cell biology ,Histone ,centromere ,Chromobox Protein Homolog 5 ,Cenp-b ,biology.protein ,Heterochromatin protein 1 ,Centromere Protein A ,CENP-B ,030217 neurology & neurosurgery ,acidic rich domain ,Research Article - Abstract
CENP-B binds to CENP-B boxes on centromeric satellite DNAs (known as alphoid DNA in humans). CENP-B maintains kinetochore function through interactions with CENP-A nucleosomes and CENP-C. CENP-B binding to transfected alphoid DNA can induce de novo CENP-A assembly, functional centromere and kinetochore formation, and subsequent human artificial chromosome (HAC) formation. Furthermore, CENP-B also facilitates H3K9 (histone H3 lysine 9) trimethylation on alphoid DNA, mediated by Suv39h1, at ectopic alphoid DNA integration sites. Excessive heterochromatin invasion into centromere chromatin suppresses CENP-A assembly. It is unclear how CENP-B controls such different chromatin states. Here, we show that the CENP-B acidic domain recruits histone chaperones and many chromatin modifiers, including the H3K36 methylase ASH1L, as well as the heterochromatin components Suv39h1 and HP1 (HP1α, β and γ, also known as CBX5, CBX1 and CBX3, respectively). ASH1L facilitates the formation of open chromatin competent for CENP-A assembly on alphoid DNA. These results indicate that CENP-B is a nexus for histone modifiers that alternatively promote or suppress CENP-A assembly by mutually exclusive mechanisms. Besides the DNA-binding domain, the CENP-B acidic domain also facilitates CENP-A assembly de novo on transfected alphoid DNA. CENP-B therefore balances CENP-A assembly and heterochromatin formation on satellite DNA., Summary: The acidic domain of CENP-B facilitates assembly of various proteins at centromeric satellite DNA, including HP1 and ASH1L. CENP-B controls centromere epigenetic status.
- Published
- 2020
42. Phase stability in nanocrystalline metals: a thermodynamic consideration
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W. Qin, Nagase, T., and Umakoshi, Y.
- Subjects
Nanoparticles -- Research ,Nanoparticles -- Thermal properties ,Transition temperature -- Observations ,Thermodynamics -- Usage ,Physics - Abstract
Thermodynamic studies are used for analyzing the mechanism of structural transition in nanocrystalline metals. The results have shown that relative to the crystallized nanocrystalline state, the face centered cubic (fcc) Fe has formed in the milled nanocrystalline state.
- Published
- 2007
43. Evaluation of effective routes and sizes for permeation through polycrystalline MFI-type zeolite membranes prepared by secondary growth
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Hasegawa, Y., Nagase, T., Kiyozumi, Y., and Mizukami, F.
- Published
- 2007
- Full Text
- View/download PDF
44. Synthesis of CdTe quantum dots using a heterogeneous process at low temperature and their optical and structural properties
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Jose, R., Biju, V., Yamaoka, Y., Nagase, T., Makita, Y., Shinohara, Y., Baba, Y., and Ishikawa, M.
- Published
- 2004
- Full Text
- View/download PDF
45. Magnetic and electronic structures of FePtCu ternary ordered alloy
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Kai, T., Maeda, T., Kikitsu, A., Akiyama, J., Nagase T., and Kishi, T.
- Subjects
Platinum alloys -- Magnetic properties ,Platinum alloys -- Structure ,Iron alloys -- Magnetic properties ,Iron alloys -- Structure ,Copper alloys -- Magnetic properties ,Copper alloys -- Structure ,Electron configuration -- Analysis ,Physics - Abstract
The microscopic structure of FePtCu ternary ordered alloys from both theoretical and experimental points of view is investigated. The findings from a comparison with the calculated density of states curve show that the Fe site of FePt ordered alloy replaced the Cu.
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- 2004
46. Eutectoid decomposition in Fe2Si5 based alloys with a small amount of 10(Pd, Pt) and 11(Cu, Ag, Au) group elements
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Yamauchi, I., Nagase, T., and Ohnaka, I.
- Published
- 2002
- Full Text
- View/download PDF
47. TUMOR NECROSIS FACTOR SUPER FAMILY MEMBER LIGHT INDUCES IL-6, MCP-1, AND IL-8 IN BEAS2B HUMAN BRONCHIAL EPITHELIAL CELLS: 451
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MIKAMI, Y, YAMAUCHI, Y, HORIE, M, NOGUCHI, S, JO, T, KOHYAMA, T, TAKIZAWA, H, and NAGASE, T
- Published
- 2012
48. Preparation and characterization of silicalite-1 membranes prepared by secondary growth of seeds with different crystal sizes
- Author
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Hasegawa, Y., Ikeda, T., Nagase, T., Kiyozumi, Y., Hanaoka, T., and Mizukami, F.
- Published
- 2006
- Full Text
- View/download PDF
49. Synthesis of nanosized platinum cluster in cubic mesoporous material via a direct introduction method
- Author
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Chatterjee, M., Iwasaki, T., Onodera, Y., and Nagase, T.
- Published
- 1999
- Full Text
- View/download PDF
50. The structure of grain boundaries in granite-origin ultramylonite studied by high-resolution electron microscopy
- Author
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Hiraga, T., Nagase, T., and Akizuki, M.
- Published
- 1999
- Full Text
- View/download PDF
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