244 results on '"Mulkern RV"'
Search Results
2. A paradoxical signal intensity increase in fatty livers using opposed-phase gradient echo imaging with fat-suppression pulses
- Author
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Mulkern RV, Salsberg SL, Ramon-Krauel M, Ludwig DS, and Voss S
- Published
- 2008
3. 3D image matching using a finite element based elastic deformation model
- Author
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UCL - Autre, Ferrant, M., Warfield, SK, Guttmann, CRG, Mulkern, RV, Jolesz, FA, Kikinis, R., 2nd International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI 99), UCL - Autre, Ferrant, M., Warfield, SK, Guttmann, CRG, Mulkern, RV, Jolesz, FA, Kikinis, R., and 2nd International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI 99)
- Abstract
We present a new approach for the computation of the deformation field between three dimensional (3D) images. The deformation field minimizes the sum of the squared differences between the images to be matched and is constrained by the physical properties of the different objects represented by the image. The objects are modeled as elastic bodies. Compared to optical flow methods, this approach distinguishes itself by three main characteristics: it can account for the actual physical properties of the objects to be deformed, it can provide us with physical properties of the deformed objects (i.e. stress tensors), and computes a global solution to the deformation instead of a set of local solutions. This latter characteristic is achieved through a finite-element based scheme. The finite element approach requires the different objects in the images to be meshed. Therefore, a tetrahedral mesh generator using a pre-computed case table and specifically suited for segmented images has been developed. Preliminary experiments on simulated data as well as on medical data have been carried out successfully. Tested medical applications included muscle exercise imaging and ventricular deformation in multiple sclerosis.
- Published
- 1999
4. A multiparameter analysis of sickle erythrocytes in patients undergoing hydroxyurea therapy
- Author
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Bridges, KR, primary, Barabino, GD, additional, Brugnara, C, additional, Cho, MR, additional, Christoph, GW, additional, Dover, G, additional, Ewenstein, BM, additional, Golan, DE, additional, Guttmann, CR, additional, Hofrichter, J, additional, Mulkern, RV, additional, Zhang, B, additional, and Eaton, WA, additional
- Published
- 1996
- Full Text
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5. Evaluation of pneumonia in children: comparison of MRI with fast imaging sequences at 1.5T with chest radiographs.
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Yikilmaz A, Koc A, Coskun A, Ozturk MK, Mulkern RV, Lee EY, Yikilmaz, Ali, Koc, Ali, Coskun, Abdulhakim, Ozturk, Mustafa K, Mulkern, Robert V, and Lee, Edward Y
- Subjects
PNEUMONIA in children ,MAGNETIC resonance imaging ,CHEST X rays ,DIAGNOSTIC imaging ,BRONCHIECTASIS ,PLEURAL effusions ,NECROSIS - Abstract
Background: Although there has been a study aimed at magnetic resonance imaging (MRI) evaluation of pneumonia in children at a low magnetic field (0.2T), there is no study which assessed the efficacy of MRI, particularly with fast imaging sequences at 1.5T, for evaluating pneumonia in children.Purpose: To investigate the efficacy of chest MRI with fast imaging sequences at 1.5T for evaluating pneumonia in children by comparing MRI findings with those of chest radiographs.Material and Methods: This was an Institutional Review Board-approved, HIPPA-compliant prospective study of 40 consecutive pediatric patients (24 boys, 16 girls; mean age 7.3 years ± 6.6 years) with pneumonia, who underwent PA and lateral chest radiographs followed by MRI within 24 h. All MRI studies were obtained in axial and coronal planes with two different fast imaging sequences: T1-weighted FFE (Fast Field Echo) (TR/TE: 83/4.6) and T2-weigthed B-FFE M2D (Balanced Fast Field Echo Multiple 2D Dimensional) (TR/TE: 3.2/1.6). Two experienced pediatric radiologists reviewed each chest radiograph and MRI for the presence of consolidation, necrosis/abscess, bronchiectasis, and pleural effusion. Chest radiograph and MRI findings were compared with Kappa statistics.Results: All consolidation, lung necrosis/abscess, bronchiectasis, and pleural effusion detected with chest radiographs were also detected with MRI. There was statistically substantial agreement between chest radiographs and MRI in detecting consolidation (k = 0.78) and bronchiectasis (k = 0.72) in children with pneumonia. The agreement between chest radiographs and MRI was moderate for detecting necrosis/abscess (k = 0.49) and fair for detecting pleural effusion (k = 0.30).Conclusion: MRI with fast imaging sequences is comparable to chest radiographs for evaluating underlying pulmonary consolidation, bronchiectasis, necrosis/abscess, and pleural effusion often associated with pneumonia in children. [ABSTRACT FROM AUTHOR]- Published
- 2011
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6. Developmental fMRI study of episodic verbal memory encoding in children.
- Author
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Maril A, Davis PE, Koo JJ, Reggev N, Zuckerman M, Ehrenfeld L, Mulkern RV, Waber DP, Rivkin MJ, Maril, A, Davis, P E, Koo, J J, Reggev, N, Zuckerman, M, Ehrenfeld, L, Mulkern, R V, Waber, D P, and Rivkin, M J
- Published
- 2010
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7. Multi-contrast high spatial resolution black blood inner volume three-dimensional fast spin echo MR imaging in peripheral vein bypass grafts.
- Author
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Rybicki FJ, Mitsouras D, Owens CD, Whitmore A, Gerhard-Herman M, Wake N, Cai T, Zhou Q, Conte MS, Creager MA, Mulkern RV, Rybicki, Frank J, Mitsouras, Dimitrios, Owens, Christopher D, Whitmore, Amanda, Gerhard-Herman, Marie, Wake, Nichole, Cai, Tianxi, Zhou, Qian, and Conte, Michael S
- Abstract
The purpose of this study is to primarily evaluate the lumen area and secondarily evaluate wall area measurements of in vivo lower extremity peripheral vein bypass grafts patients using high spatial resolution, limited field of view, cardiac gated, black blood inner volume three-dimensional fast spin echo MRI. Fifteen LE-PVBG patients prospectively underwent ultrasound followed by T1-weighted and T2-weighted magnetic resonance (MR) imaging. Lumen and vessel wall areas were measured by direct planimetry. For graft lumen areas, T1- and T2-weighted measurements were compared with ultrasound. For vessel wall areas, differences between T1- and T2-weighted measurements were evaluated. There was no significant difference between ultrasound and MR lumen measurements, reflecting minimal MR blood suppression artifact. Graft wall area measured from T1-weighted images was significantly larger than that measured from T2-weighted images (P < 0.001). The mean of the ratio of T1- versus T2-weighted vessel wall areas was 1.59 (95% CI: 1.48-1.69). The larger wall area measured on T1-weighted images was due to a significantly larger outer vessel wall boundary. Very high spatial resolution LE-PVBG vessel wall MR imaging can be performed in vivo, enabling accurate measurements of lumen and vessel wall areas and discerning differences in those measures between different tissue contrast weightings. Vessel wall area differences suggest that LE-PVBG vessel wall tissues produce distinct signal characteristics under T1 and T2 MR contrast weightings. [ABSTRACT FROM AUTHOR]
- Published
- 2010
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8. T(2) relaxometry of normal pediatric brain development.
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Leppert IR, Almli CR, McKinstry RC, Mulkern RV, Pierpaoli C, Rivkin MJ, Pike GB, Brain Development Cooperative Group, Leppert, Ilana R, Almli, C Robert, McKinstry, Robert C, Mulkern, Robert V, Pierpaoli, Carlo, Rivkin, Michael J, and Pike, G Bruce
- Abstract
Purpose: To establish normal age-related changes in the magnetic resonance (MR) T(2) relaxation time constants of brain using data collected as part of the National Institutes of Health (NIH) MRI Study of Normal Brain Development.Materials and Methods: This multicenter study of normal brain and behavior development provides both longitudinal and cross-sectional data, and has enabled us to investigate T(2) evolution in several brain regions in healthy children within the age range of birth through 4 years 5 months. Due to the multicenter nature of the study and the extended period of data collection, periodically scanned inanimate and human phantoms were used to assess intra- and intersite variability.Results: The main finding of this work, based on over 340 scans, is the identification and parameterization of the monoexponential evolution of T(2) from birth through 4 years 5 months of age in various brain structures.Conclusion: The exponentially decaying T(2) behavior is believed to reflect the rapid changes in water content as well as myelination during brain development. The data will become publicly available as part of a normative pediatric MRI and clinical/behavioral database, thereby providing a basis for comparison in studies assessing normal brain development, and studies of deviations due to various neurological, neuropsychiatric, and developmental disorders. [ABSTRACT FROM AUTHOR]- Published
- 2009
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9. Lower extremity peripheral vein bypass graft wall thickness changes demonstrated at 1 and 6 months after surgery with ultra-high spatial resolution black blood inner volume three-dimensional fast spin echo magnetic resonance imaging.
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Rybicki FJ, Mitsouras D, Owens CD, Whitmore AG, Ersoy H, Mulkern RV, Creager MA, Conte MS, Rybicki, Frank John, Mitsouras, Dimitrios, Owens, Christopher D, Whitmore, Amanda G, Ersoy, Hale, Mulkern, Robert V, Creager, Mark A, and Conte, Michael S
- Abstract
Objective: To demonstrate lower extremity peripheral vein bypass graft wall thickness changes over time in a patient using very high spatial resolution cardiac gated, black blood inner volume three-dimensional (3D) fast spin echo (FSE) magnetic resonance imaging (MRI).Case Report: A 52-year-old diabetic man with a history of hyperlipidemia underwent uncomplicated bypass grafting for an asymptomatic 5.2 cm popliteal artery aneurysm using reversed great saphenous vein. A segment of the bypass graft was studied at 1 and 6 months after surgery with cardiac gated inner volume 3D-FSE imaging with non-interpolated 0.195 mm(3) voxel volumes (0.3125 x 0.3125 x 2 mm). T1- and T2-weighted images were acquired in 10 min per contrast weighting. Graft imaging at one month after implantation illustrates expansion of the outer wall of the graft that partially resolves 5 months later.Conclusion: In this patient, expansion of the lower extremity peripheral bypass graft wall can be characterized in clinical scan times with a 3D-FSE MRI protocol using highly selective inner volume excitation followed by non-selective refocusing pulses. The resulting 3D images can potentially be used to study the biology of the vessel wall. [ABSTRACT FROM AUTHOR]- Published
- 2008
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10. Detection of fetal lactate with two-dimensional-localized proton magnetic resonance spectroscopy.
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Robinson JN, Cleary-Goldman J, Arias-Mendoza F, Cruz-Lobo J, Tempany C, Mulkern RV, Feinberg BB, and Brown TR
- Published
- 2004
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11. Diffusion Weighted Imaging: Continued Progress.
- Author
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Mulkern RV
- Subjects
- Humans, Magnetic Resonance Imaging, Brain, Diffusion Magnetic Resonance Imaging
- Published
- 2023
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12. In vivo irreversible and reversible transverse relaxation rates in human cerebral cortex via line scans at 7 T with 250 micron resolution perpendicular to the cortical surface.
- Author
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Balasubramanian M, Mulkern RV, and Polimeni JR
- Subjects
- Brain, Gray Matter diagnostic imaging, Humans, Myelin Sheath, Cerebral Cortex diagnostic imaging, Magnetic Resonance Imaging methods
- Abstract
Understanding how and why MR signals and their associated relaxation rates vary with cortical depth could ultimately enable the noninvasive investigation of the laminar architecture of cerebral cortex in the living human brain. However, cortical gray matter is typically only a few millimeters thick, making it challenging to sample many cortical depths with the voxel sizes commonly used in MRI studies. Line-scan techniques provide a way to overcome this challenge and here we implemented a novel line-scan GESSE pulse sequence that allowed us to measure irreversible and reversible transverse relaxation rates-R
2 and R2 ´, respectively-with extremely high resolution (250 μm) in the radial direction, perpendicular to the cortical surface. Eight healthy human subjects were scanned at 7 T using this sequence, with primary visual cortex (V1) targeted in three subjects and primary motor (M1) and somatosensory cortex (S1) targeted in the other five. In all three cortical areas, a peak in R2 values near the central depths was seen consistently across subjects-an observation that has not been made before, to our knowledge. On the other hand, no consistent pattern was apparent for R2 ´ values as a function of cortical depth. The intracortical R2 peak reported here is unlikely to be explained by myelin content or by deoxyhemoglobin in the microvasculature; however, this peak is in accord with the laminar distribution of non-heme iron in these cortical areas, known from prior histology studies. Obtaining information about tissue microstructure via measurements of transverse relaxation (and other quantitative MR contrast mechanisms) at the extremely high radial resolutions achievable through the use of line-scan techniques could therefore bring us closer to being able to perform "in vivo histology" of the cerebral cortex., (Copyright © 2022 Elsevier Inc. All rights reserved.)- Published
- 2022
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13. Probing in vivo cortical myeloarchitecture in humans via line-scan diffusion acquisitions at 7 T with 250-500 micron radial resolution.
- Author
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Balasubramanian M, Mulkern RV, Neil JJ, Maier SE, and Polimeni JR
- Subjects
- Anisotropy, Diffusion, Diffusion Magnetic Resonance Imaging, Humans, Cerebral Cortex, Image Processing, Computer-Assisted
- Abstract
Purpose: The goal of this study was to measure diffusion signals within the cerebral cortex using the line-scan technique to achieve extremely high resolution in the radial direction (ie, perpendicular to the cortical surface) and to demonstrate the utility of these measurements for investigating laminar architecture in the living human brain., Methods: Line-scan diffusion data with 250-500 micron radial resolution were acquired at 7 T on 8 healthy volunteers, with each line prescribed perpendicularly to primary somatosensory cortex (S1) and primary motor cortex (M1). Apparent diffusion coefficients, fractional anisotropy values, and radiality indices were measured as a function of cortical depth., Results: In the deep layers of S1, we found evidence for high anisotropy and predominantly tangential diffusion, with low anisotropy observed in superficial S1. In M1, moderate anisotropy and predominantly radial diffusion was seen at almost all cortical depths. These patterns were consistent across subjects and were conspicuous without averaging data across different locations on the cortical sheet., Conclusion: Our results are in accord with the myeloarchitecture of S1 and M1, known from prior histology studies: in S1, dense bands of tangential myelinated fibers run through the deep layers but not the superficial ones, and in M1, radial myelinated fibers are prominent at most cortical depths. This work therefore provides support for the idea that high-resolution diffusion signals, measured with the line-scan technique and receiving a boost in SNR at 7 T, may serve as a sensitive probe of in vivo laminar architecture., (© 2020 International Society for Magnetic Resonance in Medicine.)
- Published
- 2021
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14. Multiparametric MRI as a Biomarker of Response to Neoadjuvant Therapy for Localized Prostate Cancer-A Pilot Study.
- Author
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Fennessy FM, Fedorov A, Vangel MG, Mulkern RV, Tretiakova M, Lis RT, Tempany C, and Taplin ME
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- Androgen Antagonists therapeutic use, Biomarkers, Humans, Magnetic Resonance Imaging, Male, Multiparametric Magnetic Resonance Imaging, Pilot Projects, Prospective Studies, Prostatectomy, Neoadjuvant Therapy, Prostatic Neoplasms surgery, Prostatic Neoplasms therapy
- Abstract
Rationale and Objectives: To explore a role for multiparametric MRI (mpMRI) as a biomarker of response to neoadjuvant androgen deprivation therapy (ADT) for prostate cancer (PCa)., Materials and Methods: This prospective study was approved by the institutional review board and was HIPAA compliant. Eight patients with localized PCa had a baseline mpMRI, repeated after 6-months of ADT, followed by prostatectomy. mpMRI indices were extracted from tumor and normal regions of interest (TROI/NROI). Residual cancer burden (RCB) was measured on mpMRI and on the prostatectomy specimen. Paired t-tests compared TROI/NROI mpMRI indices and pre/post-treatment TROI mpMRI indices. Spearman's rank tested for correlations between MRI/pathology-based RCB, and between pathological RCB and mpMRI indices., Results: At baseline, TROI apparent diffusion coefficient (ADC) was lower and dynamic contrast enhanced (DCE) metrics were higher, compared to NROI (ADC: 806 ± 137 × 10
-6 vs. 1277 ± 213 × 10-6 mm2 /sec, p = 0.0005; Ktrans : 0.346 ± 0.16 vs. 0.144 ± 0.06 min-1 , p = 0.002; AUC90 : 0.213 ± 0.08 vs. 0.11 ± 0.03, p = 0.002). Post-treatment, there was no change in TROI ADC, but a decrease in TROI Ktrans (0.346 ± 0.16 to 0.188 ± 0.08 min-1 ; p = 0.02) and AUC90 (0.213 ± 0.08 to 0.13 ± 0.06; p = 0.02). Tumor volume decreased with ADT. There was no difference between mpMRI-based and pathology-based RCB, which positively correlated (⍴ = 0.74-0.81, p < 0.05). Pathology-based RCB positively correlated with post-treatment DCE metrics (⍴ = 0.76-0.70, p < 0.05) and negatively with ADC (⍴ = -0.79, p = 0.03)., Conclusion: Given the heterogeneity of PCa, an individualized approach to ADT may maximize potential benefit. This pilot study suggests that mpMRI may serve as a biomarker of ADT response and as a surrogate for RCB at prostatectomy., (Copyright © 2019 The Association of University Radiologists. Published by Elsevier Inc. All rights reserved.)- Published
- 2020
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15. Spectrally-selective measurements of reversible and irreversible transverse relaxation rates from single spin-echo PRESS acquisitions in muscle.
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Mulkern RV, Nosrati R, and Balasubramanian M
- Subjects
- Choline metabolism, Creatine metabolism, Female, Humans, Lipids chemistry, Male, Middle Aged, Muscles metabolism, Phantoms, Imaging, Time Factors, Water, Magnetic Resonance Imaging, Muscles diagnostic imaging, Spin Labels
- Abstract
The goal of this study was to test a new formalism for extracting reversible and irreversible transverse relaxation rates from resonances within typical proton muscle spectra using only a single spin echo as acquired with routine single-voxel, point-resolved echo spectroscopy (PRESS) acquisitions. Single-voxel, non-water-suppressed PRESS acquisitions within the calf muscles of four healthy subjects were performed at 1.5 T using six echo times ranging from 30 to 576 ms. Novel transverse relaxation analyses of water, choline, creatine, and lipid resonances were performed based upon the disparate relaxation sensitivities of the left versus the right sides of spectroscopically sampled spin echoes. Irreversible and reversible transverse relaxation rates R
2 and R2 ' were extracted for water, metabolites, and lipids using echo times of 288 ms and longer. The R2 values so obtained were compared with more conventional "gold standard" Hahn values, R2Hahn , evaluated from the echo-time dependence of spectral peak areas generated from right-side sampling alone. Water resonances displayed biexponential Hahn signal decays, consistent with observations of decreasing R2 values with increasing echo time via the new approach. Choline and creatine resonances displayed monoexponential echo-time decays, with R2Hahn values in reasonable agreement with R2 values obtained from the single-echo analyses at the longer echo times. Lipid methylene and methyl R2 values extracted from the new approach were also in reasonable accord with R2Hahn values. Further validation of the technique was provided through PRESS acquisitions on a water phantom to which various levels of gadolinium were added in order to manipulate transverse relaxation rates, yielding excellent agreement between water-resonance R2Hahn and single-echo R2 values. In summary, this work demonstrates the feasibility of measuring reversible and irreversible transverse relaxation rates for individual spectral peaks from single-echo PRESS acquisitions, enabling a reduction in overall scan time relative to the use of multiple acquisitions with varying echo time., (© 2020 John Wiley & Sons, Ltd.)- Published
- 2020
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16. Assessment of Superparamagnetic Iron Oxide Nanoparticle Poly(Ethylene Glycol) Coatings on Magnetic Resonance Relaxation for Early Disease Detection.
- Author
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Meisel CL, Bainbridge P, Mulkern RV, Mitsouras D, and Wong JY
- Abstract
Objective: Superparamagnetic Iron Oxide Nanoparticles (SPIONs) are widely researched as contrast agents in clinical magnetic resonance imaging (MRI). SPIONs are frequently coated with anti-biofouling substances such as poly(ethylene glycol) (PEG) to prevent protein deposition and improve circulation time in vivo. However, few previous studies have comprehensively examined optimization of SPION MR properties with respect to physicochemical properties of the core SPION and the polymeric coating. The aim of this study is to determine effects of different methods of chemical attachment of a polymer, polymer chain length, and polymer coating density on the MR relaxivities of SPIONs, thereby contributing to a better understanding of the interaction of these parameters and the efficacy of the designed agent., Results: These studies indicate that the chemical composition and, in particular, the hydrophobicity/hydrophilicity of the chemical group linking PEG chains to a SPION core may play a larger role in the resulting MR relaxivities than other variable properties such as SPION core size and PEG chain length., Conclusions: The method of SPION fabrication and chemical composition of the coating play a significant role in the MR relaxivities of the resulting particles. These results should be considered in the fabrication of particles for clinical purposes, particularly when optimization of the MR relaxivities is desired.
- Published
- 2020
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17. In vivo measurements of irreversible and reversible transverse relaxation rates in human basal ganglia at 7 T: making inferences about the microscopic and mesoscopic structure of iron and calcification deposits.
- Author
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Balasubramanian M, Polimeni JR, and Mulkern RV
- Subjects
- Adult, Aged, Aged, 80 and over, Female, Humans, Male, Middle Aged, Young Adult, Basal Ganglia diagnostic imaging, Calcification, Physiologic, Iron metabolism, Magnetic Resonance Imaging
- Abstract
The goal of this study was to measure irreversible and reversible transverse relaxation rates in the globus pallidus and putamen at 7 T, and to use these rates to make inferences about the sub-voxel structure of iron and calcification deposits. Gradient Echo Sampling of a Spin Echo (GESSE) data were acquired at 7 T on eighteen volunteers spanning a large range of ages (23-85 years), with calcifications in the globus pallidus incidentally observed in one volunteer. Maps of transverse relaxation rates were derived from the GESSE data, and the mean value of these rates in globus pallidus and putamen was estimated for each volunteer. Both irreversible and reversible transverse relaxation rates increased with the expected age-dependent iron content in these structures, except for the individual with calcifications for whom extremely large reversible relaxation rates but normal irreversible relaxation rates were found in the globus pallidus. Given the sensitivity of irreversible and reversible transverse relaxation rates to microscopic and mesoscopic field variations, respectively, our findings suggest that joint consideration of these rates may yield information not only about the amount of iron and calcification deposited in the brain, but also about the sub-voxel structure of these deposits, perhaps revealing certain aspects of their geometry and cellular distribution., (© 2019 John Wiley & Sons, Ltd.)
- Published
- 2019
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18. Fetal Echoplanar Imaging: Promises and Challenges.
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Afacan O, Estroff JA, Yang E, Barnewolt CE, Connolly SA, Parad RB, Mulkern RV, Warfield SK, and Gholipour A
- Subjects
- Brain diagnostic imaging, Brain embryology, Diffusion Magnetic Resonance Imaging methods, Humans, Lung diagnostic imaging, Lung embryology, Echo-Planar Imaging methods, Fetal Diseases diagnostic imaging
- Abstract
Fetal magnetic resonance imaging (MRI) has been gaining increasing interest in both clinical radiology and research. Echoplanar imaging (EPI) offers a unique potential, as it can be used to acquire images very fast. It can be used to freeze motion, or to get multiple images with various contrast mechanisms that allow studying the microstructure and function of the fetal brain and body organs. In this article, we discuss the current clinical and research applications of fetal EPI. This includes T2*-weighted imaging to better identify blood products and vessels, using diffusion-weighted MRI to investigate connections of the developing brain and using functional MRI (fMRI) to identify the functional networks of the developing brain. EPI can also be used as an alternative structural sequence when banding or standing wave artifacts adversely affect the mainstream sequences used routinely in structural fetal MRI. We also discuss the challenges with EPI acquisitions, and potential solutions. As EPI acquisitions are inherently sensitive to susceptibility artifacts, geometric distortions limit the use of high-resolution EPI acquisitions. Also, interslice motion and transmit and receive field inhomogeneities may create significant artifacts in fetal EPI. We conclude by discussing promising research directions to overcome these challenges to improve the use of EPI in clinical and research applications.
- Published
- 2019
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19. Comparison of quantitative apparent diffusion coefficient parameters with prostate imaging reporting and data system V2 assessment for detection of clinically significant peripheral zone prostate cancer.
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Hassanzadeh E, Alessandrino F, Olubiyi OI, Glazer DI, Mulkern RV, Fedorov A, Tempany CM, and Fennessy FM
- Subjects
- Adult, Aged, Diagnosis, Differential, Humans, Male, Middle Aged, Prostate diagnostic imaging, Retrospective Studies, Sensitivity and Specificity, Diffusion Magnetic Resonance Imaging methods, Prostatic Neoplasms diagnostic imaging
- Abstract
Purpose: To compare diagnostic performance of PI-RADSv2 with ADC parameters to identify clinically significant prostate cancer (csPC) and to determine the impact of csPC definitions on diagnostic performance of ADC and PI-RADSv2., Methods: We retrospectively identified treatment-naïve pathology-proven peripheral zone PC patients who underwent 3T prostate MRI, using high b-value diffusion-weighted imaging from 2011 to 2015. Using 3D slicer, areas of suspected tumor (T) and normal tissue (N) on ADC (b = 0, 1400) were outlined volumetrically. Mean ADC
T , mean ADCN , ADCratio (ADCT /ADCN ) were calculated. PI-RADSv2 was assigned. Three csPC definitions were used: (A) Gleason score (GS) ≥ 4 + 3; (B) GS ≥ 3 + 4; (C) MRI-based tumor volume >0.5 cc. Performances of ADC parameters and PI-RADSv2 in identifying csPC were measured using nonparametric comparison of receiver operating characteristic curves using the area under the curve (AUC)., Results: Eighty five cases met eligibility requirements. Diagnostic performances (AUC) in identifying csPC using three definitions were: (A) ADCT (0.83) was higher than PI-RADSv2 (0.65, p = 0.006); (B) ADCT (0.86) was higher than ADCratio (0.68, p < 0.001), and PI-RADSv2 (0.70, p = 0.04); (C) PI-RADSv2 (0.73) performed better than ADCratio (0.56, p = 0.02). ADCT performance was higher when csPC was defined by A or B versus C (p = 0.038 and p = 0.01, respectively). ADCratio performed better when csPC was defined by A versus C (p = 0.01). PI-RADSv2 performance was not affected by csPC definition., Conclusions: When csPC was defined by GS, ADC parameters provided better csPC discrimination than PI-RADSv2, with ADCT providing best result. When csPC was defined by MRI-calculated volume, PI-RADSv2 provided better discrimination than ADCratio . csPC definition did not affect PI-RADSv2 diagnostic performance.- Published
- 2018
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20. Accuracy, repeatability, and interplatform reproducibility of T 1 quantification methods used for DCE-MRI: Results from a multicenter phantom study.
- Author
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Bane O, Hectors SJ, Wagner M, Arlinghaus LL, Aryal MP, Cao Y, Chenevert TL, Fennessy F, Huang W, Hylton NM, Kalpathy-Cramer J, Keenan KE, Malyarenko DI, Mulkern RV, Newitt DC, Russek SE, Stupic KF, Tudorica A, Wilmes LJ, Yankeelov TE, Yen YF, Boss MA, and Taouli B
- Subjects
- Brain diagnostic imaging, Breast diagnostic imaging, Contrast Media chemistry, Female, Humans, Male, Neoplasms diagnostic imaging, Prostate diagnostic imaging, Reproducibility of Results, Image Interpretation, Computer-Assisted methods, Magnetic Resonance Imaging instrumentation, Magnetic Resonance Imaging methods, Magnetic Resonance Imaging standards, Phantoms, Imaging, Signal Processing, Computer-Assisted
- Abstract
Purpose: To determine the in vitro accuracy, test-retest repeatability, and interplatform reproducibility of T
1 quantification protocols used for dynamic contrast-enhanced MRI at 1.5 and 3 T., Methods: A T1 phantom with 14 samples was imaged at eight centers with a common inversion-recovery spin-echo (IR-SE) protocol and a variable flip angle (VFA) protocol using seven flip angles, as well as site-specific protocols (VFA with different flip angles, variable repetition time, proton density, and Look-Locker inversion recovery). Factors influencing the accuracy (deviation from reference NMR T1 measurements) and repeatability were assessed using general linear mixed models. Interplatform reproducibility was assessed using coefficients of variation., Results: For the common IR-SE protocol, accuracy (median error across platforms = 1.4-5.5%) was influenced predominantly by T1 sample (P < 10-6 ), whereas test-retest repeatability (median error = 0.2-8.3%) was influenced by the scanner (P < 10-6 ). For the common VFA protocol, accuracy (median error = 5.7-32.2%) was influenced by field strength (P = 0.006), whereas repeatability (median error = 0.7-25.8%) was influenced by the scanner (P < 0.0001). Interplatform reproducibility with the common VFA was lower at 3 T than 1.5 T (P = 0.004), and lower than that of the common IR-SE protocol (coefficient of variation 1.5T: VFA/IR-SE = 11.13%/8.21%, P = 0.028; 3 T: VFA/IR-SE = 22.87%/5.46%, P = 0.001). Among the site-specific protocols, Look-Locker inversion recovery and VFA (2-3 flip angles) protocols showed the best accuracy and repeatability (errors < 15%)., Conclusions: The VFA protocols with 2 to 3 flip angles optimized for different applications achieved acceptable balance of extensive spatial coverage, accuracy, and repeatability in T1 quantification (errors < 15%). Further optimization in terms of flip-angle choice for each tissue application, and the use of B1 correction, are needed to improve the robustness of VFA protocols for T1 mapping. Magn Reson Med 79:2564-2575, 2018. © 2017 International Society for Magnetic Resonance in Medicine., (© 2017 International Society for Magnetic Resonance in Medicine.)- Published
- 2018
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21. Magnetic resonance imaging and spectroscopy evidence of efficacy for adrenal and gonadal hormone replacement therapy in anorexia nervosa.
- Author
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Vajapeyam S, Ecklund K, Mulkern RV, Feldman HA, O'Donnell JM, DiVasta AD, Rosen CJ, and Gordon CM
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- Administration, Oral, Adolescent, Dehydroepiandrosterone therapeutic use, Double-Blind Method, Drug Combinations, Estrogens, Conjugated (USP) therapeutic use, Ethinyl Estradiol therapeutic use, Female, Humans, Levonorgestrel therapeutic use, Anorexia Nervosa drug therapy, Hormone Replacement Therapy methods, Magnetic Resonance Imaging methods
- Abstract
Purpose: Dehydroepiandrosterone (DHEA)+estrogen/progestin therapy for adolescent girls with anorexia nervosa (AN) has the potential to arrest bone loss. The primary aim of this study was to test the effects of DHEA+estrogen/progestin therapy in adolescent girls with AN on bone marrow in the distal femur using magnetic resonance imaging (MRI) and spectroscopy., Methods: Seventy adolescent girls with AN were enrolled in a double blind, randomized, placebo-controlled trial at two urban hospital-based programs., Intervention: Seventy-six girls were randomly assigned to receive 12months of either oral micronized DHEA or placebo. DHEA was administered with conjugated equine estrogens (0.3mg daily) for 3months, then an oral contraceptive (20μg ethinyl estradiol/ 0.1mg levonorgestrel) for 9months. The primary outcome measure was bone marrow fat by MRI and magnetic resonance spectroscopy (MRS)., Results: T2 of the water resonance dropped significantly less in the active vs. placebo group over 12months at both the medial and lateral distal femur (p=0.02). Body mass index (BMI) was a significant effect modifier for T1 and for T2 of unsaturated (T2
unsat ) and saturated fat (T2sat ) in the lateral distal femur. Positive effects of the treatment of DHEA+estrogen/progestin were seen primarily for girls above a BMI of about 18kg/m2 ., Conclusions: These findings suggest treatment with oral DHEA+estrogen/progestin arrests the age- and disease-related changes in marrow fat composition in the lateral distal femur reported previously in this population., (Copyright © 2018. Published by Elsevier Inc.)- Published
- 2018
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22. Spectroscopic sampling of the left side of long-TE spin echoes: a free lunch?
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Mulkern RV and Balasubramanian M
- Subjects
- Adipose Tissue diagnostic imaging, Aspartic Acid metabolism, Bone Marrow diagnostic imaging, Choline metabolism, Creatine metabolism, Fourier Analysis, Humans, Knee diagnostic imaging, Magnetic Resonance Spectroscopy, Male, Middle Aged, Models, Statistical, Muscles diagnostic imaging, Normal Distribution, Protons, Signal-To-Noise Ratio, Image Processing, Computer-Assisted methods, Spectrophotometry
- Abstract
Objective: Use of spectroscopically-acquired spin echoes typically involves Fourier transformation of the right side of the echo while largely neglecting the left side. For sufficiently long echo times, the left side may have enough spectral resolution to offer some utility. Since the acquisition of this side is "free", we deemed it worthy of attention and investigated the spectral properties and information content of this data., Materials and Methods: Theoretical expressions for left- and right-side spectra were derived assuming Lorentzian frequency distributions. For left-side spectra, three regimes were identified based upon the relative magnitudes of reversible and irreversible transverse relaxation rates, R
2 ' and R2 , respectively. Point-resolved spectroscopy (PRESS) data from muscle, fat deposit and bone marrow were acquired at 1.5 T to test aspects of the theoretical expressions., Results: For muscle water or methylene marrow resonances, left-side signals were substantially or moderately larger than right-side signals but were similar in magnitude for muscle choline and creatine resonances. Left- versus right-side spectral-peak amplitude ratios depend sensitively on the relative values of R2 and R2 ' , which can be estimated given this ratio and a right-side linewidth measurement., Conclusion: Left-side spectra can be used to augment signal-to-noise and to estimate spectral R2 and R2 ' values under some circumstances.- Published
- 2018
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23. Evaluation of fitting models for prostate tissue characterization using extended-range b-factor diffusion-weighted imaging.
- Author
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Langkilde F, Kobus T, Fedorov A, Dunne R, Tempany C, Mulkern RV, and Maier SE
- Subjects
- Adult, Aged, Algorithms, Area Under Curve, Humans, Image Processing, Computer-Assisted, Magnetic Resonance Imaging, Male, Middle Aged, Neoplasm Grading, Normal Distribution, Phantoms, Imaging, Probability, ROC Curve, Diffusion Magnetic Resonance Imaging, Prostate diagnostic imaging, Prostatic Neoplasms diagnostic imaging
- Abstract
Purpose: To compare the fitting and tissue discrimination performance of biexponential, kurtosis, stretched exponential, and gamma distribution models for high b-factor diffusion-weighted images in prostate cancer., Methods: Diffusion-weighted images with 15 b-factors ranging from b = 0 to 3500 s/mm
2 were obtained in 62 prostate cancer patients. Pixel-wise signal decay fits for each model were evaluated with the Akaike Information Criterion (AIC). Parameter values for each model were determined within normal prostate and the index lesion. Their potential to differentiate normal from cancerous tissue was investigated through receiver operating characteristic analysis and comparison with Gleason score., Results: The biexponential slow diffusion fraction fslow , the apparent kurtosis diffusion coefficient ADCK , and the excess kurtosis factor K differ significantly among normal peripheral zone (PZ), normal transition zone (TZ), tumor PZ, and tumor TZ. Biexponential and gamma distribution models result in the lowest AIC, indicating a superior fit. Maximum areas under the curve (AUCs) of all models ranged from 0.93 to 0.96 for the PZ and from 0.95 to 0.97 for the TZ. Similar AUCs also result from the apparent diffusion coefficient (ADC) of a monoexponential fit to a b-factor sub-range up to 1250 s/mm2 . For kurtosis and stretched exponential models, single parameters yield the highest AUCs, whereas for the biexponential and gamma distribution models, linear combinations of parameters produce the highest AUCs. Parameters with high AUC show a trend in differentiating low from high Gleason score, whereas parameters with low AUC show no such ability., Conclusion: All models, including a monoexponential fit to a lower-b sub-range, achieve similar AUCs for discrimination of normal and cancer tissue. The biexponential model, which is favored statistically, also appears to provide insight into disease-related microstructural changes. Magn Reson Med 79:2346-2358, 2018. © 2017 International Society for Magnetic Resonance in Medicine., (© 2017 International Society for Magnetic Resonance in Medicine.)- Published
- 2018
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24. Bone marrow fat content in 70 adolescent girls with anorexia nervosa: Magnetic resonance imaging and magnetic resonance spectroscopy assessment.
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Ecklund K, Vajapeyam S, Mulkern RV, Feldman HA, O'Donnell JM, DiVasta AD, and Gordon CM
- Subjects
- Adolescent, Age Factors, Child, Female, Humans, Severity of Illness Index, Adipose Tissue diagnostic imaging, Adipose Tissue pathology, Anorexia Nervosa diagnostic imaging, Anorexia Nervosa pathology, Bone Marrow diagnostic imaging, Bone Marrow pathology, Knee diagnostic imaging, Magnetic Resonance Imaging methods, Magnetic Resonance Spectroscopy methods
- Abstract
Background: Adolescents and women with anorexia nervosa have increased bone marrow fat and decreased bone formation, at least in part due to hormonal changes leading to preferential stem cell differentiation to adipocytes over osteoblasts., Objective: The purpose of this study was to evaluate marrow fat content and correlate with age and disease severity using knee MRI with T1 relaxometry (T1-R) and MR spectroscopy (MRS) in 70 adolescents with anorexia nervosa., Materials and Methods: We enrolled 70 girls with anorexia nervosa who underwent 3-T knee MRI with coronal T1-W images, T1-R and single-voxel proton MRS at 30 and 60 ms TE. Metaphyses were scored visually on the T1-W images for red marrow. Visual T1 score, T1 relaxometry values, MRS lipid indices and fat fractions were analyzed by regression on age, body mass index (BMI) and bone mineral density (BMD) as disease severity markers. MRS measures included unsaturated fat index, T2 water, unsaturated and saturated fat fractions., Results: All red marrow measures declined significantly with age. T1-R values were associated negatively with BMI and BMD for girls ≤16 years (P=0.03 and P=0.002, respectively) and positively for those≥17 years (P=0.05 and P=0.003, respectively). MRS identified a strong inverse association between T2 water and saturated fat fraction from 60 ms TE data (r=-0.85, P<0.0001). There was no association between unsaturated fat index and BMI or BMD., Conclusions: The association between T1 and BMI and BMD among older girls suggests more marrow fat in those with severe anorexia nervosa. In contrast, the physiological association between marrow fat content and age remained dominant in younger patients. The strong association between T2 water and saturated fat may relate to the restricted mobility of water with increasing marrow fat.
- Published
- 2017
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25. On the perils of multiexponential fitting of diffusion MR data.
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Mulkern RV, Balasubramanian M, and Maier SE
- Subjects
- Diffusion, Magnetic Resonance Spectroscopy
- Published
- 2017
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26. Diffusion-weighted endorectal MR imaging at 3T for prostate cancer: correlation with tumor cell density and percentage Gleason pattern on whole mount pathology.
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Glazer DI, Hassanzadeh E, Fedorov A, Olubiyi OI, Goldberger SS, Penzkofer T, Flood TA, Masry P, Mulkern RV, Hirsch MS, Tempany CM, and Fennessy FM
- Subjects
- Adenocarcinoma surgery, Aged, Contrast Media, Gadolinium DTPA, Humans, Male, Middle Aged, Neoplasm Grading, Prospective Studies, Prostatectomy, Prostatic Neoplasms surgery, Adenocarcinoma diagnostic imaging, Adenocarcinoma pathology, Diffusion Magnetic Resonance Imaging methods, Prostatic Neoplasms diagnostic imaging, Prostatic Neoplasms pathology
- Abstract
Objective: To determine if tumor cell density and percentage of Gleason pattern within an outlined volumetric tumor region of interest (TROI) on whole-mount pathology (WMP) correlate with apparent diffusion coefficient (ADC) values on corresponding TROIs outlined on pre-operative MRI., Methods: Men with biopsy-proven prostate adenocarcinoma undergoing multiparametric MRI (mpMRI) prior to prostatectomy were consented to this prospective study. WMP and mpMRI images were viewed using 3D Slicer and each TROI from WMP was contoured on the high b-value ADC maps (b0, 1400). For each TROI outlined on WMP, TCD (tumor cell density) and the percentage of Gleason pattern 3, 4, and 5 were recorded. The ADC
mean , ADC10th percentile , ADC90th percentile , and ADCratio were also calculated in each case from the ADC maps using 3D Slicer., Results: Nineteen patients with 21 tumors were included in this study. ADCmean values for TROIs were 944.8 ± 327.4 vs. 1329.9 ± 201.6 mm2 /s for adjacent non-neoplastic prostate tissue (p < 0.001). ADCmean , ADC10th percentile , and ADCratio values for higher grade tumors were lower than those of lower grade tumors (mean 809.71 and 1176.34 mm2 /s, p = 0.014; 10th percentile 613.83 and 1018.14 mm2 /s, p = 0.009; ratio 0.60 and 0.94, p = 0.005). TCD and ADCmean (ρ = -0.61, p = 0.005) and TCD and ADC10th percentile (ρ = -0.56, p = 0.01) were negatively correlated. No correlation was observed between percentage of Gleason pattern and ADC values., Conclusion: DWI MRI can characterize focal prostate cancer using ADCratio , ADC10th percentile , and ADCmean , which correlate with pathological tumor cell density.- Published
- 2017
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27. Three-dimensional printing of MRI-visible phantoms and MR image-guided therapy simulation.
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Mitsouras D, Lee TC, Liacouras P, Ionita CN, Pietilla T, Maier SE, and Mulkern RV
- Subjects
- Cervical Vertebrae surgery, Equipment Design, Equipment Failure Analysis, Humans, Reproducibility of Results, Sensitivity and Specificity, Cervical Vertebrae diagnostic imaging, Cryosurgery instrumentation, Magnetic Resonance Imaging instrumentation, Phantoms, Imaging, Printing, Three-Dimensional instrumentation, Surgery, Computer-Assisted instrumentation
- Abstract
Purpose: To demonstrate the use of anatomic MRI-visible three-dimensional (3D)-printed phantoms and to assess process accuracy and material MR signal properties., Methods: A cervical spine model was generated from computed tomography (CT) data and 3D-printed using an MR signal-generating material. Printed phantom accuracy and signal characteristics were assessed using 120 kVp CT and 3 Tesla (T) MR imaging. The MR relaxation rates and diffusion coefficient of the fabricated phantom were measured and
1 H spectra were acquired to provide insight into the nature of the proton signal. Finally, T2 -weighted imaging was performed during cryoablation of the model., Results: The printed model produced a CT signal of 102 ± 8 Hounsfield unit, and an MR signal roughly 1/3rd that of saline in short echo time/short repetition time GRE MRI (456 ± 36 versus 1526 ± 121 arbitrary signal units). Compared with the model designed from the in vivo CT scan, the printed model differed by 0.13 ± 0.11 mm in CT, and 0.62 ± 0.28 mm in MR. The printed material had T2 ∼32 ms, T2*∼7 ms, T1 ∼193 ms, and a very small diffusion coefficient less than olive oil. MRI monitoring of the cryoablation demonstrated iceball formation similar to an in vivo procedure., Conclusion: Current 3D printing technology can be used to print anatomically accurate phantoms that can be imaged by both CT and MRI. Such models can be used to simulate MRI-guided interventions such as cryosurgeries. Future development of the proposed technique can potentially lead to printed models that depict different tissues and anatomical structures with different MR signal characteristics. Magn Reson Med 77:613-622, 2017. © 2016 International Society for Magnetic Resonance in Medicine., (© 2016 International Society for Magnetic Resonance in Medicine.)- Published
- 2017
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28. RF Heating of Gold Cup and Conductive Plastic Electrodes during Simultaneous EEG and MRI.
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Balasubramanian M, Wells WM, Ives JR, Britz P, Mulkern RV, and Orbach DB
- Subjects
- Electrodes, Electroencephalography instrumentation, Electroencephalography methods, Head diagnostic imaging, Hot Temperature, Humans, Magnetic Resonance Imaging instrumentation, Magnetic Resonance Imaging methods, Male, Materials Testing, Middle Aged, Phantoms, Imaging, Radio Waves, Electroencephalography adverse effects, Magnetic Resonance Imaging adverse effects
- Abstract
Purpose: To investigate the heating of EEG electrodes during magnetic resonance imaging (MRI) scans and to better understand the underlying physical mechanisms with a focus on the antenna effect., Materials and Methods: Gold cup and conductive plastic electrodes were placed on small watermelons with fiberoptic probes used to measure electrode temperature changes during a variety of 1.5T and 3T MRI scans. A subset of these experiments was repeated on a healthy human volunteer., Results: The differences between gold and plastic electrodes did not appear to be practically significant. For both electrode types, we observed heating below 4°C for straight wires whose lengths were multiples of ½ the radiofrequency (RF) wavelength and stronger heating (over 15°C) for wire lengths that were odd multiples of ¼ RF wavelength, consistent with the antenna effect., Conclusions: The antenna effect, which has received little attention so far in the context of EEG-MRI safety, can play as significant a role as the loop effect (from electromagnetic induction) in the heating of EEG electrodes, and therefore wire lengths that are odd multiples of ¼ RF wavelength should be avoided. These results have important implications for the design of EEG electrodes and MRI studies as they help to minimize the risk to patients undergoing MRI with EEG electrodes in place.
- Published
- 2017
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29. Fetal lung apparent diffusion coefficient measurement using diffusion-weighted MRI at 3 Tesla: Correlation with gestational age.
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Afacan O, Gholipour A, Mulkern RV, Barnewolt CE, Estroff JA, Connolly SA, Parad RB, Bairdain S, and Warfield SK
- Subjects
- Diffusion, Feasibility Studies, Female, Humans, Image Enhancement methods, Image Interpretation, Computer-Assisted methods, Lung diagnostic imaging, Male, Reproducibility of Results, Sensitivity and Specificity, Statistics as Topic, Aging physiology, Diffusion Tensor Imaging methods, Gestational Age, Lung embryology, Lung physiology, Prenatal Diagnosis methods
- Abstract
Purpose: To evaluate the feasibility of using diffusion-weighted magnetic resonance imaging (DW-MRI) to assess the fetal lung apparent diffusion coefficient (ADC) at 3 Tesla (T)., Materials and Methods: Seventy-one pregnant women (32 second trimester, 39 third trimester) were scanned with a twice-refocused Echo-planar diffusion-weighted imaging sequence with 6 different b-values in 3 orthogonal diffusion orientations at 3T. After each scan, a region-of-interest (ROI) mask was drawn to select a region in the fetal lung and an automated robust maximum likelihood estimation algorithm was used to compute the ADC parameter. The amount of motion in each scan was visually rated., Results: When scans with unacceptable levels of motion were eliminated, the lung ADC values showed a strong association with gestational age (P < 0.01), increasing dramatically between 16 and 27 weeks and then achieving a plateau around 27 weeks., Conclusion: We show that to get reliable estimates of ADC values of fetal lungs, a multiple b-value acquisition, where motion is either corrected or considered, can be performed. J. Magn. Reson. Imaging 2016;44:1650-1655., (© 2016 International Society for Magnetic Resonance in Medicine.)
- Published
- 2016
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30. Fast myelin water fraction estimation using 2D multislice CPMG.
- Author
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Akhondi-Asl A, Afacan O, Balasubramanian M, Mulkern RV, and Warfield SK
- Subjects
- Adult, Female, Humans, Male, Myelin Sheath ultrastructure, Reproducibility of Results, Sensitivity and Specificity, Young Adult, Algorithms, Body Water metabolism, Diffusion Tensor Imaging methods, Image Interpretation, Computer-Assisted methods, Myelin Sheath metabolism
- Abstract
Purpose: T2 relaxometry based on multiexponential fitting to a single slice multiecho sequence has been the most common MRI technique for myelin water fraction mapping, where the short T2 is associated with myelin water. However, very long acquisition times and physically unrealistic models for T2 distribution are limitations of this approach. We present a novel framework for myelin imaging which substantially increases the imaging speed and myelin water fraction estimation accuracy., Method: We used the 2D multislice Carr-Purcell-Meiboom-Gill sequence to increase the volume coverage. To compensate for nonideal slice profiles, we numerically solved the Bloch equations for a range of T2 and B1 inhomogeneity scales to construct the bases for the estimation of the T2 distribution. We used a finite mixture of continuous parametric distributions to describe the complete T2 spectrum and used the constrained variable projection optimization algorithm to estimate myelin water fraction. To validate our model, synthetic, phantom, and in vivo brain experiments were conducted., Results: Using the Bloch equations, we can model the slice profile and construct the forward model of the T2 curve. Our method estimated myelin water fraction with smaller error than the nonnegative least squares algorithm., Conclusions: The proposed framework can be used for reliable whole brain myelin imaging with a resolution of 2×2×4 mm3 in ≈17 min. Magn Reson Med 76:1301-1313, 2016. © 2015 Wiley Periodicals, Inc., (© 2015 Wiley Periodicals, Inc.)
- Published
- 2016
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31. Characterizing gradient echo signal decays in gynecologic cancers at 3T using a Gaussian augmentation of the monoexponential (GAME) model.
- Author
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Ciris PA, Balasubramanian M, Damato AL, Seethamraju RT, Tempany-Afdhal CM, Mulkern RV, and Viswanathan AN
- Subjects
- Adult, Aged, Computer Simulation, Female, Humans, Image Enhancement methods, Middle Aged, Normal Distribution, Reproducibility of Results, Sensitivity and Specificity, Tumor Hypoxia, Biomarkers, Tumor metabolism, Genital Neoplasms, Female diagnostic imaging, Genital Neoplasms, Female metabolism, Image Interpretation, Computer-Assisted methods, Magnetic Resonance Imaging methods, Models, Statistical, Oxygen metabolism
- Abstract
Purpose: To assess whether R2* mapping with a standard Monoexponential (ME) or a Gaussian Augmentation of the Monoexponential (GAME) decay model better characterizes gradient-echo signal decays in gynecological cancers after external beam radiation therapy at 3T, and evaluate implications of modeling for noninvasive identification of intratumoral hypoxia., Materials and Methods: Multi-gradient-echo signals were acquired on 25 consecutive patients with gynecologic cancers and three healthy participants during inhalation of different oxygen concentrations at 3T. Data were fitted with both ME and GAME models. Models were compared using F-tests in tumors and muscles in patients, muscles, cervix, and uterus in healthy participants, and across oxygenation levels., Results: GAME significantly improved fitting over ME (P < 0.05): Improvements with GAME covered 34% of tumor regions-of-interest on average, ranging from 6% (of a vaginal tumor) to 68% (of a cervical tumor) in individual tumors. Improvements with GAME were more prominent in areas that would be assumed hypoxic based on ME alone, reaching 90% as ME R2* approached 100 Hz. Gradient echo decay parameters at different oxygenation levels were not significantly different (P = 0.81)., Conclusion: R2* may prove sensitive to hypoxia; however, inaccurate representations of underlying data may limit the success of quantitative assessments. Although the degree to which R2 or σ values correlate with hypoxia remains unknown, improved characterization with GAME increases the potential for determining any correlates of fit parameters with biomarkers, such as oxygenation status. J. MAGN. RESON. IMAGING 2016;44:1020-1030., (© 2016 International Society for Magnetic Resonance in Medicine.)
- Published
- 2016
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32. Characterization of gradient echo signal decays in healthy and cancerous prostate at 3T improves with a Gaussian augmentation of the mono-exponential (GAME) model.
- Author
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Ciris PA, Balasubramanian M, Seethamraju RT, Tokuda J, Scalera J, Penzkofer T, Fennessy FM, Tempany-Afdhal CM, Tuncali K, and Mulkern RV
- Subjects
- Aged, Algorithms, Computer Simulation, Data Interpretation, Statistical, Humans, Male, Normal Distribution, Reproducibility of Results, Sensitivity and Specificity, Signal Processing, Computer-Assisted, Image Enhancement methods, Image Interpretation, Computer-Assisted methods, Models, Statistical, Pattern Recognition, Automated methods, Prostatic Neoplasms diagnostic imaging, Prostatic Neoplasms pathology
- Abstract
A biomarker of cancer aggressiveness, such as hypoxia, could substantially impact treatment decisions in the prostate, especially radiation therapy, by balancing treatment morbidity (urinary incontinence, erectile dysfunction, etc.) against mortality. R2 (*) mapping with Mono-Exponential (ME) decay modeling has shown potential for identifying areas of prostate cancer hypoxia at 1.5T. However, Gaussian deviations from ME decay have been observed in other tissues at 3T. The purpose of this study is to assess whether gradient-echo signal decays are better characterized by a standard ME decay model, or a Gaussian Augmentation of the Mono-Exponential (GAME) decay model, in the prostate at 3T. Multi-gradient-echo signals were acquired on 20 consecutive patients with a clinical suspicion of prostate cancer undergoing MR-guided prostate biopsies. Data were fitted with both ME and GAME models. The information contents of these models were compared using Akaike's information criterion (second order, AICC ), in skeletal muscle, the prostate central gland (CG), and peripheral zone (PZ) regions of interest (ROIs). The GAME model had higher information content in 30% of the prostate on average (across all patients and ROIs), covering up to 67% of cancerous PZ ROIs, and up to 100% of cancerous CG ROIs (in individual patients). The higher information content of GAME became more prominent in regions that would be assumed hypoxic using ME alone, reaching 50% of the PZ and 70% of the CG as ME R2 (*) approached 40 s(-1) . R2 (*) mapping may have important applications in MRI; however, information lost due to modeling could mask differences in parameters due to underlying tissue anatomy or physiology. The GAME model improves characterization of signal behavior in the prostate at 3T, and may increase the potential for determining correlates of fit parameters with biomarkers, for example of oxygenation status., (Copyright © 2016 John Wiley & Sons, Ltd.)
- Published
- 2016
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33. Multicomponent T2 relaxation studies of the avian egg.
- Author
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Mitsouras D, Mulkern RV, and Maier SE
- Subjects
- Animals, Biomarkers metabolism, Chickens, Egg White chemistry, Egg Yolk physiology, Image Processing, Computer-Assisted, Phantoms, Imaging, Signal Processing, Computer-Assisted, Magnetic Resonance Imaging, Ovum physiology
- Abstract
Purpose: To investigate the tissue-like multiexponential T2 signal decays in avian eggs., Methods: Transverse relaxation studies of raw, soft-boiled and hard-boiled eggs were performed at 3 Tesla using a three-dimensional Carr-Purcell-Meiboom-Gill imaging sequence. Signal decays over a TE range of 11 to 354 ms were fitted assuming single- and multicomponent signal decays with up to three separately decaying components. Fat saturation was used to facilitate spectral assignment of observed decay components., Results: Egg white, yolk and the centrally located latebra all demonstrate nonmonoexponential T2 decays. Specifically, egg white exhibits two-component decays with intermediate and long T2 times. Meanwhile, yolk and latebra are generally best characterized with triexponential decays, with short, intermediate and very long T2 decay times. Fat saturation revealed that the intermediate component of yolk could be attributed to lipids. Cooking of the egg profoundly altered the decay curves., Conclusion: Avian egg T2 decay curves cover a wide range of decay times. Observed T2 components in yolk and latebra as short as 10 ms, may prove valuable for testing clinical sequences designed to measure short T2 components, such as myelin-associated water in the brain. Thus we propose that the egg can be a versatile and widely available MR transverse relaxation phantom., (© 2015 Wiley Periodicals, Inc.)
- Published
- 2016
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34. Bone marrow segmentation based on a combined consideration of transverse relaxation processes and Dixon oscillations.
- Author
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Balasubramanian M, Jarrett DY, and Mulkern RV
- Subjects
- Computer Simulation, Humans, Male, Middle Aged, Spin Labels, Time Factors, Bone Marrow anatomy & histology, Image Processing, Computer-Assisted, Magnetic Resonance Imaging methods
- Abstract
The aim of this study was to demonstrate that gradient-echo sampling of single spin echoes can be used to isolate the signal from trabecular bone marrow, with high-quality segmentation and surface reconstructions resulting from the application of simple post-processing strategies. Theoretical expressions of the time-domain single-spin-echo signal were used to simulate signals from bone marrow, non-bone fatty deposits and muscle. These simulations were compared with and used to interpret signals obtained by the application of the gradient-echo sampling of a spin-echo sequence to image the knee and surrounding tissues at 1.5 T. Trabecular bone marrow has a much higher reversible transverse relaxation rate than surrounding non-bone fatty deposits and other musculoskeletal tissues. This observation, combined with a choice of gradient-echo spacing that accentuates Dixon-type oscillations from chemical-shift interference effects, enabled the isolation of bone marrow signal from surrounding tissues through the use of simple image subtraction and thresholding. Three-dimensional renderings of the marrow surface were then readily generated with this approach - renderings that may prove useful for bone morphology assessment, e.g. for the measurement of femoral anteversion. In conclusion, understanding the behavior of signals from bone marrow and surrounding tissue as a function of time through a spin echo facilitates the segmentation and reconstruction of bone marrow surfaces using straightforward post-processing strategies that are typically available on modern radiology workstations., (Copyright © 2016 John Wiley & Sons, Ltd.)
- Published
- 2016
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35. On replacing the manual measurement of ACR phantom images performed by MRI technologists with an automated measurement approach.
- Author
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Panych LP, Chiou JY, Qin L, Kimbrell VL, Bussolari L, and Mulkern RV
- Subjects
- Humans, Observer Variation, Quality Control, Reference Values, Signal-To-Noise Ratio, Software, Image Processing, Computer-Assisted methods, Magnetic Resonance Imaging methods, Pattern Recognition, Automated, Phantoms, Imaging, Radiology methods, Radiology standards
- Abstract
Purpose: To assess whether measurements on American College of Radiology (ACR) phantom images performed by magnetic resonance imaging (MRI) technologists as part of a weekly quality control (QC) program could be performed exclusively using an automated system without compromising the integrity of the QC program., Materials and Methods: ACR phantom images are acquired on 15 MRI scanners at a number of ACR-accredited sites to fulfill requirements of a weekly QC program. MRI technologists routinely perform several measurements on these images. Software routines are also used to perform the measurements. A set of geometry measurements made by technologists over a five week period and those made using software routines were compared to reference-standard measurements made by two MRI physicists., Results: The geometry measurements performed by software routines had a very high positive correlation (0.92) with the reference-standard measurements. Technologist measurements also had a high positive correlation (0.63), although the correlation was less than for the automated measurements. Bland-Altman analysis revealed overall good agreement between the automated and reference-standard measurements, with the 95% limits of agreement being within ±0.62 mm. Agreement between the technologist and the reference-standard measurements was demonstratively poorer, with 95% limits of agreement being ±1.46 mm. Some of the technologist measurements differed from the reference standard by as much as 2 mm., Conclusion: The technologists' geometry measurements may be able to be replaced by automated measurement without compromising the weekly QC program required by the ACR., (© 2015 Wiley Periodicals, Inc.)
- Published
- 2016
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36. Magnetic resonance imaging of ionic currents in solution: the effect of magnetohydrodynamic flow.
- Author
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Balasubramanian M, Mulkern RV, Wells WM, Sundaram P, and Orbach DB
- Subjects
- Cerebrospinal Fluid physiology, Humans, Hydrodynamics, Ions metabolism, Oxygen metabolism, Phantoms, Imaging, Brain physiology, Magnetic Fields, Magnetic Resonance Imaging methods
- Abstract
Purpose: Reliably detecting MRI signals in the brain that are more tightly coupled to neural activity than blood-oxygen-level-dependent fMRI signals could not only prove valuable for basic scientific research but could also enhance clinical applications such as epilepsy presurgical mapping. This endeavor will likely benefit from an improved understanding of the behavior of ionic currents, the mediators of neural activity, in the presence of the strong magnetic fields that are typical of modern-day MRI scanners., Theory: Of the various mechanisms that have been proposed to explain the behavior of ionic volume currents in a magnetic field, only one-magnetohydrodynamic flow-predicts a slow evolution of signals, on the order of a minute for normal saline in a typical MRI scanner., Methods: This prediction was tested by scanning a volume-current phantom containing normal saline with gradient-echo-planar imaging at 3 T., Results: Greater signal changes were observed in the phase of the images than in the magnitude, with the changes evolving on the order of a minute., Conclusion: These results provide experimental support for the MHD flow hypothesis. Furthermore, MHD-driven cerebrospinal fluid flow could provide a novel fMRI contrast mechanism., (© 2014 Wiley Periodicals, Inc.)
- Published
- 2015
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37. Quantitative pharmacokinetic analysis of prostate cancer DCE-MRI at 3T: comparison of two arterial input functions on cancer detection with digitized whole mount histopathological validation.
- Author
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Fennessy FM, Fedorov A, Penzkofer T, Kim KW, Hirsch MS, Vangel MG, Masry P, Flood TA, Chang MC, Tempany CM, Mulkern RV, and Gupta SN
- Subjects
- Aged, Algorithms, Computer Simulation, Contrast Media pharmacokinetics, Humans, Image Enhancement methods, Male, Middle Aged, Reproducibility of Results, Sensitivity and Specificity, Gadolinium DTPA pharmacokinetics, Image Interpretation, Computer-Assisted methods, Magnetic Resonance Imaging methods, Models, Biological, Prostatic Neoplasms metabolism, Prostatic Neoplasms pathology
- Abstract
Accurate pharmacokinetic (PK) modeling of dynamic contrast enhanced MRI (DCE-MRI) in prostate cancer (PCa) requires knowledge of the concentration time course of the contrast agent in the feeding vasculature, the so-called arterial input function (AIF). The purpose of this study was to compare AIF choice in differentiating peripheral zone PCa from non-neoplastic prostatic tissue (NNPT), using PK analysis of high temporal resolution prostate DCE-MRI data and whole-mount pathology (WMP) validation. This prospective study was performed in 30 patients who underwent multiparametric endorectal prostate MRI at 3.0T and WMP validation. PCa foci were annotated on WMP slides and MR images using 3D Slicer. Foci ≥0.5cm(3) were contoured as tumor regions of interest (TROIs) on subtraction DCE (early-arterial - pre-contrast) images. PK analyses of TROI and NNPT data were performed using automatic AIF (aAIF) and model AIF (mAIF) methods. A paired t-test compared mean and 90th percentile (p90) PK parameters obtained with the two AIF approaches. Receiver operating characteristic (ROC) analysis determined diagnostic accuracy (DA) of PK parameters. Logistic regression determined correlation between PK parameters and histopathology. Mean TROI and NNPT PK parameters were higher using aAIF vs. mAIF (p<0.05). There was no significant difference in DA between AIF methods: highest for p90 volume transfer constant (K(trans)) (aAIF differences in the area under the ROC curve (Az) = 0.827; mAIF Az=0.93). Tumor cell density correlated with aAIF K(trans) (p=0.03). Our results indicate that DCE-MRI using both AIF methods is excellent in discriminating PCa from NNPT. If quantitative DCE-MRI is to be used as a biomarker in PCa, the same AIF method should be used consistently throughout the study., (Copyright © 2015 Elsevier Inc. All rights reserved.)
- Published
- 2015
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38. In memoriam: Ferenc A. Jolesz (1946-2014).
- Author
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Mulkern RV and Tempany CM
- Subjects
- History, 20th Century, History, 21st Century, United States, Biomedical Research history, Magnetic Resonance Imaging history, Radiology history
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- 2015
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39. On the lorentzian versus Gaussian character of time-domain spin-echo signals from the brain as sampled by means of gradient-echoes: Implications for quantitative transverse relaxation studies.
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Mulkern RV, Balasubramanian M, and Mitsouras D
- Abstract
Purpose: To determine whether Lorentzian or Gaussian intra-voxel frequency distributions are better suited for modeling data acquired with gradient-echo sampling of single spin-echoes for the simultaneous characterization of irreversible and reversible relaxation rates. Clinical studies (e.g., of brain iron deposition) using such acquisition schemes have typically assumed Lorentzian distributions., Theory and Methods: Theoretical expressions of the time-domain spin-echo signal for intra-voxel Lorentzian and Gaussian distributions were used to fit data from a human brain scanned at both 1.5 Tesla (T) and 3T, resulting in maps of irreversible and reversible relaxation rates for each model. The relative merits of the Lorentzian versus Gaussian model were compared by means of quality of fit considerations., Results: Lorentzian fits were equivalent to Gaussian fits primarily in regions of the brain where irreversible relaxation dominated. In the multiple brain regions where reversible relaxation effects become prominent, however, Gaussian fits were clearly superior., Conclusion: The widespread assumption that a Lorentzian distribution is suitable for quantitative transverse relaxation studies of the brain should be reconsidered, particularly at 3T and higher field strengths as reversible relaxation effects become more prominent. Gaussian distributions offer alternate fits of experimental data that should prove quite useful in general. Magn Reson Med 74:51-62, 2015. © 2014 Wiley Periodicals, Inc., (© 2014 Wiley Periodicals, Inc.)
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- 2015
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40. Diffusion-weighted imaging of prostate cancer using a statistical model based on the gamma distribution.
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Shinmoto H, Oshio K, Tamura C, Soga S, Okamura T, Yamada K, Kaji T, and Mulkern RV
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- Aged, Aged, 80 and over, Algorithms, Computer Simulation, Data Interpretation, Statistical, Humans, Male, Middle Aged, Reproducibility of Results, Sensitivity and Specificity, Statistical Distributions, Diffusion Magnetic Resonance Imaging methods, Image Enhancement methods, Image Interpretation, Computer-Assisted methods, Models, Statistical, Prostatic Hyperplasia pathology, Prostatic Neoplasms pathology
- Abstract
Purpose: To assess the adequacy of a statistical model based on the gamma distribution for diffusion signal decays of prostate cancer (PCa) using b-values ranging up to 2000 sec/mm(2) , and to evaluate the differences in gamma model parameters for PCa, benign prostatic hyperplasia (BPH), and peripheral zone (PZ)., Materials and Methods: Twenty-six patients with histologically proven PCa underwent diffusion-weighted magnetic resonance imaging using five b-values (0, 500, 1000, 1500, 2000 sec/mm(2) ). The acquired signal decay curves were fit with both gamma and truncated Gaussian models and a statistical comparison between the two fits was performed. The acquired parameters using the gamma model (mean, standard deviation, the area fraction for D < 1.0 mm(2) /s [Frac<1.0], the area fraction of D > 3.0 mm(2) /s [Frac>3.0]) were compared between PCa, BPH, and PZ., Results: The gamma model provided a statistically improved fit over the truncated Gaussian model in PCa. The mean and the standard deviation were significantly lower in PCa than in BPH and PZ (P < 0.01). Frac<1.0 was significantly higher in PCa than in BPH and PZ, and Frac>3.0 was significantly lower in PCa than in BPH and PZ (P < 0.01)., Conclusion: A statistical model based on the gamma distribution proved suitable for describing diffusion signal decay curves of PCa. This approach may provide better correlation between diffusion signal decay and histological information in the prostate gland., (© 2014 Wiley Periodicals, Inc.)
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- 2015
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41. Prostate cancer discrimination in the peripheral zone with a reduced field-of-view T(2)-mapping MRI sequence.
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Yamauchi FI, Penzkofer T, Fedorov A, Fennessy FM, Chu R, Maier SE, Tempany CM, Mulkern RV, and Panych LP
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- Aged, Humans, Image Interpretation, Computer-Assisted methods, Male, Middle Aged, Observer Variation, ROC Curve, Reproducibility of Results, Sensitivity and Specificity, Image Processing, Computer-Assisted methods, Magnetic Resonance Imaging, Prostate pathology, Prostatic Neoplasms diagnosis
- Abstract
Objectives: To evaluate the performance of T2 mapping in discriminating prostate cancer from normal prostate tissue in the peripheral zone using a practical reduced field-of-view MRI sequence requiring less than 3 minutes of scan time., Materials and Methods: Thirty-six patients with biopsy-proven peripheral zone prostate cancer without prior treatment underwent routine multiparametric MRI at 3.0T with an endorectal coil. An Inner-Volume Carr-Purcell-Meiboom-Gill imaging sequence that required 2.8 minutes to obtain data for quantitative T2 mapping covering the entire prostate gland was added to the routine multiparametric protocol. Suspected cancer (SC) and suspected healthy (SH) tissue in the peripheral zone were identified in consensus by three radiologists and were correlated with available biopsy results. Differences in mean T2 values in SC and SH regions-of-interest (ROIs) were tested for significance using unpaired Student's two-tailed t-test. The area under the receiver operating characteristic curve was used to assess the optimal threshold T2 value for cancer discrimination., Results: ROI analyses revealed significantly (p<0.0001) shorter T2 values in SC (85.4±12.3ms) compared to SH (169.6±38.7ms). An estimated T2 threshold of 99ms yielded a sensitivity of 92% and a specificity of 97% for prostate cancer discrimination., Conclusions: Quantitative values derived from this clinically practical T2-mapping sequence allow high precision discrimination between healthy and cancerous peripheral zone in the prostate., (Copyright © 2015 Elsevier Inc. All rights reserved.)
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- 2015
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42. The role of pathology correlation approach in prostate cancer index lesion detection and quantitative analysis with multiparametric MRI.
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Fedorov A, Penzkofer T, Hirsch MS, Flood TA, Vangel MG, Masry P, Tempany CM, Mulkern RV, and Fennessy FM
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- Aged, Biopsy, Contrast Media, Diffusion Magnetic Resonance Imaging, Gadolinium DTPA, Humans, Male, Middle Aged, Neoplasm Grading, Prostate-Specific Antigen blood, Prostatectomy, Prostatic Neoplasms blood, Prostatic Neoplasms surgery, Tumor Burden, Magnetic Resonance Imaging methods, Prostatic Neoplasms pathology
- Abstract
Rationale and Objectives: Development of imaging biomarkers often relies on their correlation with histopathology. Our aim was to compare two approaches for correlating pathology to multiparametric magnetic resonance (MR) imaging (mpMRI) for localization and quantitative assessment of prostate cancer (PCa) index tumor using whole mount (WM) pathology (WMP) as the reference., Materials and Methods: Patients (N = 30) underwent mpMRI that included diffusion-weighted imaging and dynamic contrast-enhanced (DCE) MRI at 3 T before radical prostatectomy (RP). RP specimens were processed using WM technique (WMP) and findings summarized in a standard surgical pathology report (SPR). Histology index tumor volumes (HTVs) were compared to MR tumor volumes (MRTVs) using two approaches for index lesion identification on mpMRI using annotated WMP slides as the reference (WMP) and using routine SPR as the reference. Consistency of index tumor localization, tumor volume, and mean values of the derived quantitative parameters (mean apparent diffusion coefficient [ADC], K(trans), and ve) were compared., Results: Index lesions from 16 of 30 patients met the selection criteria. There was WMP/SRP agreement in index tumor in 13 of 16 patients. ADC-based MRTVs were larger (P < .05) than DCE-based MRTVs. ADC MRTVs were smaller than HTV (P < .005). There was a strong correlation between HTV and MRTV (Pearson ρ > 0.8; P < .05). No significant differences were observed in the mean values of K(trans) and ADC between the WMP and SPR., Conclusions: WMP correlation is superior to SPR for accurate localization of all index lesions. The use of WMP is however not required to distinguish significant differences of mean values of quantitative MRI parameters within tumor volume., (Copyright © 2015 AUR. Published by Elsevier Inc. All rights reserved.)
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- 2015
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43. MR Imaging in a case of severe anorexia nervosa: the 'flip-flop' effect.
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DiVasta AD, Mulkern RV, Gordon CM, and Ecklund K
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- Anorexia Nervosa complications, Humans, Malnutrition etiology, Anorexia Nervosa pathology, Artifacts, Diagnostic Errors prevention & control, Magnetic Resonance Imaging methods, Malnutrition pathology
- Abstract
We report an MR imaging phenomenon that can lead to misinterpretation. The unique appearance of the soft tissues and bone marrow in a 19-year-old severely malnourished woman with anorexia nervosa raised concerns about technical failure or systemic pathology. Due to extreme fat depletion, the T1-weighted images appeared to be fat-suppressed and the fat-suppressed fluid-sensitive images appeared to be non-fat-suppressed ("flip-flopped"). Failure to recognize the influence of a patient's overall nutritional status on MR images may cause confusion and misdiagnosis.
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- 2015
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44. Spatially constrained incoherent motion method improves diffusion-weighted MRI signal decay analysis in the liver and spleen.
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Taimouri V, Afacan O, Perez-Rossello JM, Callahan MJ, Mulkern RV, Warfield SK, and Freiman M
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- Adolescent, Adult, Algorithms, Child, Child, Preschool, Crohn Disease pathology, Diffusion, Female, Humans, Ileum, Liver pathology, Male, Models, Theoretical, Motion, Spleen pathology, Young Adult, Diffusion Magnetic Resonance Imaging methods, Image Processing, Computer-Assisted methods, Liver anatomy & histology, Spleen anatomy & histology
- Abstract
Purpose: To evaluate the effect of the spatially constrained incoherent motion (SCIM) method on improving the precision and robustness of fast and slow diffusion parameter estimates from diffusion-weighted MRI in liver and spleen in comparison to the independent voxel-wise intravoxel incoherent motion (IVIM) model., Methods: We collected diffusion-weighted MRI (DW-MRI) data of 29 subjects (5 healthy subjects and 24 patients with Crohn's disease in the ileum). We evaluated parameters estimates' robustness against different combinations of b-values (i.e., 4 b-values and 7 b-values) by comparing the variance of the estimates obtained with the SCIM and the independent voxel-wise IVIM model. We also evaluated the improvement in the precision of parameter estimates by comparing the coefficient of variation (CV) of the SCIM parameter estimates to that of the IVIM., Results: The SCIM method was more robust compared to IVIM (up to 70% in liver and spleen) for different combinations of b-values. Also, the CV values of the parameter estimations using the SCIM method were significantly lower compared to repeated acquisition and signal averaging estimated using IVIM, especially for the fast diffusion parameter in liver (CVIV IM = 46.61 ± 11.22, CVSCIM = 16.85 ± 2.160, p < 0.001) and spleen (CVIV IM = 95.15 ± 19.82, CVSCIM = 52.55 ± 1.91, p < 0.001)., Conclusions: The SCIM method characterizes fast and slow diffusion more precisely compared to the independent voxel-wise IVIM model fitting in the liver and spleen.
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- 2015
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45. Pediatric brain tumor consortium multisite assessment of apparent diffusion coefficient z-axis variation assessed with an ice-water phantom.
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Mulkern RV, Ricci KI, Vajapeyam S, Chenevert TL, Malyarenko DI, Kocak M, and Poussaint TY
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- Child, Humans, Ice, Reproducibility of Results, Water, Brain Neoplasms diagnosis, Magnetic Resonance Imaging methods, Phantoms, Imaging
- Abstract
Rationale and Objectives: Magnetic resonance diffusion imaging can characterize physiologic characteristics of pediatric brain tumors used to assess therapy response. The purpose of this study was to assess the variability of the apparent diffusion coefficient (ADC) along z-axis of scanners in the multicenter Pediatric Brain Tumor Consortium (PBTC)., Materials and Methods: Ice-water diffusion phantoms for each PBTC site were distributed with a specific diffusion imaging protocol. The phantom was scanned four successive times to 1) confirm water in the tube reached thermal equilibrium and 2) allow for assessment of intra-examination ADC repeatability. ADC profiles across slice positions for each vendor and institution combination were characterized using linear regression modeling with a quadratic fit., Results: Eleven sites collected data with a high degree of compliance to the diffusion protocol for each scanner. The mean ADC value at slice position zero for vendor A was 1.123 × 10(-3) mm(2)/s, vendor B was 1.0964 × 10(-3) mm(2)/s, and vendor C was 1.110 × 10(-3) mm(2)/s. The percentage coefficient of variation across all sites was 0.309% (standard deviation = 0.322). The ADC values conformed well to a second-order polynomial along the z-axis, (ie, following a linear model pattern with quadratic fit) for vendor-institution combinations and across vendor-institution combinations as shown in the longitudinal model., Conclusions: Assessment of the variability of diffusion metrics is essential for establishing the validity of using these quantitative metrics in multicenter trials. The low variability in ADC values across vendors and institutions and validates the use of ADC as a quantitative tumor marker in pediatric multicenter trials., (Copyright © 2015 AUR. Published by Elsevier Inc. All rights reserved.)
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- 2015
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46. Transperineal in-bore 3-T MR imaging-guided prostate biopsy: a prospective clinical observational study.
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Penzkofer T, Tuncali K, Fedorov A, Song SE, Tokuda J, Fennessy FM, Vangel MG, Kibel AS, Mulkern RV, Wells WM, Hata N, and Tempany CM
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- Aged, Contrast Media, Gadolinium DTPA, Humans, Image Interpretation, Computer-Assisted, Male, Middle Aged, Perineum, Prospective Studies, Image-Guided Biopsy, Magnetic Resonance Imaging, Interventional methods, Prostatic Neoplasms pathology
- Abstract
Purpose: To determine the detection rate, clinical relevance, Gleason grade, and location of prostate cancer ( PCa prostate cancer ) diagnosed with and the safety of an in-bore transperineal 3-T magnetic resonance (MR) imaging-guided prostate biopsy in a clinically heterogeneous patient population., Materials and Methods: This prospective retrospectively analyzed study was HIPAA compliant and institutional review board approved, and informed consent was obtained. Eighty-seven men (mean age, 66.2 years ± 6.9) underwent multiparametric endorectal prostate MR imaging at 3 T and transperineal MR imaging-guided biopsy. Three subgroups of patients with at least one lesion suspicious for cancer were included: men with no prior PCa prostate cancer diagnosis, men with PCa prostate cancer who were undergoing active surveillance, and men with treated PCa prostate cancer and suspected recurrence. Exclusion criteria were prior prostatectomy and/or contraindication to 3-T MR imaging. The transperineal MR imaging-guided biopsy was performed in a 70-cm wide-bore 3-T device. Overall patient biopsy outcomes, cancer detection rates, Gleason grade, and location for each subgroup were evaluated and statistically compared by using χ(2) and one-way analysis of variance followed by Tukey honestly significant difference post hoc comparisons., Results: Ninety biopsy procedures were performed with no serious adverse events, with a mean of 3.7 targets sampled per gland. Cancer was detected in 51 (56.7%) men: 48.1% (25 of 52) with no prior PCa prostate cancer , 61.5% (eight of 13) under active surveillance, and 72.0% (18 of 25) in whom recurrence was suspected. Gleason pattern 4 or higher was diagnosed in 78.1% (25 of 32) in the no prior PCa prostate cancer and active surveillance groups. Gleason scores were not assigned in the suspected recurrence group. MR targets located in the anterior prostate had the highest cancer yield (40 of 64, 62.5%) compared with those for the other parts of the prostate (P < .001)., Conclusion: In-bore 3-T transperineal MR imaging-guided biopsy, with a mean of 3.7 targets per gland, allowed detection of many clinically relevant cancers, many of which were located anteriorly.
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- 2015
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47. Fetal MRI: A Technical Update with Educational Aspirations.
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Gholipour A, Estroff JA, Barnewolt CE, Robertson RL, Grant PE, Gagoski B, Warfield SK, Afacan O, Connolly SA, Neil JJ, Wolfberg A, and Mulkern RV
- Abstract
Fetal magnetic resonance imaging (MRI) examinations have become well-established procedures at many institutions and can serve as useful adjuncts to ultrasound (US) exams when diagnostic doubts remain after US. Due to fetal motion, however, fetal MRI exams are challenging and require the MR scanner to be used in a somewhat different mode than that employed for more routine clinical studies. Herein we review the techniques most commonly used, and those that are available, for fetal MRI with an emphasis on the physics of the techniques and how to deploy them to improve success rates for fetal MRI exams. By far the most common technique employed is single-shot T2-weighted imaging due to its excellent tissue contrast and relative immunity to fetal motion. Despite the significant challenges involved, however, many of the other techniques commonly employed in conventional neuro- and body MRI such as T1 and T2*-weighted imaging, diffusion and perfusion weighted imaging, as well as spectroscopic methods remain of interest for fetal MR applications. An effort to understand the strengths and limitations of these basic methods within the context of fetal MRI is made in order to optimize their use and facilitate implementation of technical improvements for the further development of fetal MR imaging, both in acquisition and post-processing strategies.
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- 2014
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48. Avian egg latebra as brain tissue water diffusion model.
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Maier SE, Mitsouras D, and Mulkern RV
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- Animals, Chickens, Diffusion, Diffusion Magnetic Resonance Imaging methods, Equipment Design, Equipment Failure Analysis, Models, Biological, Models, Chemical, Reproducibility of Results, Sensitivity and Specificity, Biomimetic Materials chemistry, Body Water chemistry, Brain Chemistry, Diffusion Magnetic Resonance Imaging instrumentation, Egg Yolk chemistry, Lipids chemistry, Phantoms, Imaging
- Abstract
Purpose: Simplified models of non-monoexponential diffusion signal decay are of great interest to study the basic constituents of complex diffusion behavior in tissues. The latebra, a unique structure uniformly present in the yolk of avian eggs, exhibits a non-monoexponential diffusion signal decay. This model is more complex than simple phantoms based on differences between water and lipid diffusion, but is also devoid of microscopic structures with preferential orientation or perfusion effects., Methods: Diffusion scans with multiple b-values were performed on a clinical 3 Tesla system in raw and boiled chicken eggs equilibrated to room temperature. Diffusion encoding was applied over the ranges 5-5,000 and 5-50,000 s/mm(2). A low read-out bandwidth and chemical shift was used for reliable lipid/water separation. Signal decays were fitted with exponential functions., Results: The latebra, when measured over the 5-5,000 s/mm(2) range, exhibited independent of preparation clearly biexponential diffusion, with diffusion parameters similar to those typically observed in in vivo human brain. For the range 5-50,000 s/mm(2), there was evidence of a small third, very slow diffusing water component., Conclusion: The latebra of the avian egg contains membrane structures, which may explain a deviation from a simple monoexponential diffusion signal decay, which is remarkably similar to the deviation observed in brain tissue., (Copyright © 2013 Wiley Periodicals, Inc.)
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- 2014
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49. T(2)-relaxometry for myelin water fraction extraction using wald distribution and extended phase graph.
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Akhondi-Asl A, Afacan O, Mulkern RV, and Warfield SK
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- Brain anatomy & histology, Computer Simulation, Humans, Models, Statistical, Reproducibility of Results, Sensitivity and Specificity, Statistical Distributions, Tissue Distribution, Body Water metabolism, Brain metabolism, Image Interpretation, Computer-Assisted methods, Magnetic Resonance Imaging methods, Magnetic Resonance Spectroscopy methods, Myelin Sheath metabolism
- Abstract
Quantitative assessment of myelin density in the white matter is an emerging tool for neurodegenerative disease related studies such as multiple sclerosis and Schizophrenia. For the last two decades, T2 relaxometry based on multi-exponential fitting to a single slice multi-echo sequence has been the most common MRI technique for myelin water fraction (MWF) mapping, where the short T2 is associated with myelin water. However, modeling the spectrum of the relaxations as the sum of large number of impulse functions with unknown amplitudes makes the accuracy and robustness of the estimated MWF's questionable. In this paper, we introduce a novel model with small number of parameters to simultaneously characterize transverse relaxation rate spectrum and B1 inhomogeneity at each voxel. We use mixture of three Wald distributions with unknown mixture weights, mean and shape parameters to represent the distribution of the relative amount of water in between myelin sheets, tissue water, and cerebrospinal fluid. The parameters of the model are estimated using the variable projection method and are used to extract the MWF at each voxel. In addition, we use Extended Phase Graph (EPG) method to compensate for the stimulated echoes caused by B1 inhomogeneity. To validate our model, synthetic and real brain experiments were conducted where we have compared our novel algorithm with the non-negative least squares (NNLS) as the state-of-the-art technique in the literature. Our results indicate that we can estimate MWF map with substantially higher accuracy as compared to the NNLS method.
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- 2014
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50. Interpretation of diffusion MR imaging data using a gamma distribution model.
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Oshio K, Shinmoto H, and Mulkern RV
- Subjects
- Humans, Male, Prostate pathology, Reproducibility of Results, Diffusion Magnetic Resonance Imaging methods, Diffusion Magnetic Resonance Imaging statistics & numerical data, Image Interpretation, Computer-Assisted methods, Models, Statistical, Prostatic Neoplasms diagnosis
- Abstract
Purpose: Although many models have been proposed to interpret non-Gaussian diffusion MRI data in biological tissues, it is often difficult to see the correlation between the MRI data and the histological changes in the tissue. Among these models, so called statistical models, which assume the diffusion coefficient D is distributed continuously within a voxel, are more suitable for interpreting the data in a histological context than others. In this work, we examined a statistical model based on the gamma distribution., Methods: First, the proposed gamma model, the bi-exponential model, and the truncated Gaussian model were compared for goodness of fit. To evaluate diagnostic capability, area fractions of certain D ranges were evaluated. The area fraction for D < 1.0 mm2/s (frac < 1) was attributed to small cancer cells with restricted diffusion, and the area fraction for D > 3.0 mm2/s (frac > 3) was considered to reflect perfusion component. A clinical data set of histologically proven prostate cancer cases from previous study was used., Results: For the cancer tissue, the gamma model was better fit than the truncated Gaussian model, and there was no significant difference between the gamma model and the bi-exponential model. For the normal peripheral zone tissue, there was no significant differences among all models. In the 2D scatter plot of frac < 1 vs. frac > 3, Cancer and non-cancer tissues were clearly separated., Conclusion: Using the proposed model, the diffusion MR data was well fit, and histological interpretation of the data appears possible.
- Published
- 2014
- Full Text
- View/download PDF
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