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1,265 results on '"Mortimer, Peter"'

1. Excavating in the Wild: The GOOSE-Ex Dataset for Semantic Segmentation

Author

Hagmanns, Raphael, Mortimer, Peter, Granero, Miguel, Luettel, Thorsten, and Petereit, Janko

Subjects
Computer Science - Robotics, Computer Science - Computer Vision and Pattern Recognition
Abstract

The successful deployment of deep learning-based techniques for autonomous systems is highly dependent on the data availability for the respective system in its deployment environment. Especially for unstructured outdoor environments, very few datasets exist for even fewer robotic platforms and scenarios. In an earlier work, we presented the German Outdoor and Offroad Dataset (GOOSE) framework along with 10000 multimodal frames from an offroad vehicle to enhance the perception capabilities in unstructured environments. In this work, we address the generalizability of the GOOSE framework. To accomplish this, we open-source the GOOSE-Ex dataset, which contains additional 5000 labeled multimodal frames from various completely different environments, recorded on a robotic excavator and a quadruped platform. We perform a comprehensive analysis of the semantic segmentation performance on different platforms and sensor modalities in unseen environments. In addition, we demonstrate how the combined datasets can be utilized for different downstream applications or competitions such as offroad navigation, object manipulation or scene completion. The dataset, its platform documentation and pre-trained state-of-the-art models for offroad perception will be made available on https://goose-dataset.de/. \, Comment: Submitted to IEEE for review

Published
2024

2. Airborne DNA reveals predictable spatial and seasonal dynamics of fungi.

Author

Abrego, Nerea, Furneaux, Brendan, Hardwick, Bess, Somervuo, Panu, Palorinne, Isabella, Aguilar-Trigueros, Carlos, Andrew, Nigel, Babiy, Ulyana, Bao, Tan, Bazzano, Gisela, Bondarchuk, Svetlana, Bonebrake, Timothy, Brennan, Georgina, Bret-Harte, Syndonia, Bässler, Claus, Cagnolo, Luciano, Cameron, Erin, Chapurlat, Elodie, Creer, Simon, DAcqui, Luigi, de Vere, Natasha, Desprez-Loustau, Marie-Laure, Dongmo, Michel, Jacobsen, Ida, Fisher, Brian, Flores de Jesus, Miguel, Gilbert, Gregory, Griffith, Gareth, Gritsuk, Anna, Gross, Andrin, Grudd, Håkan, Halme, Panu, Hanna, Rachid, Hansen, Jannik, Hansen, Lars, Hegbe, Apollon, Hill, Sarah, Hogg, Ian, Hultman, Jenni, Hyde, Kevin, Hynson, Nicole, Ivanova, Natalia, Karisto, Petteri, Kerdraon, Deirdre, Knorre, Anastasia, Krisai-Greilhuber, Irmgard, Kurhinen, Juri, Kuzmina, Masha, Lecomte, Nicolas, Lecomte, Erin, Loaiza, Viviana, Lundin, Erik, Meire, Alexander, Mešić, Armin, Miettinen, Otto, Monkhouse, Norman, Mortimer, Peter, Müller, Jörg, Nilsson, R, Nonti, Puani, Nordén, Jenni, Nordén, Björn, Norros, Veera, Paz, Claudia, Pellikka, Petri, Pereira, Danilo, Petch, Geoff, Pitkänen, Juha-Matti, Popa, Flavius, Potter, Caitlin, Purhonen, Jenna, Pätsi, Sanna, Rafiq, Abdullah, Raharinjanahary, Dimby, Rakos, Niklas, Rathnayaka, Achala, Raundrup, Katrine, Rebriev, Yury, Rikkinen, Jouko, Rogers, Hanna, Rogovsky, Andrey, Rozhkov, Yuri, Runnel, Kadri, Saarto, Annika, Savchenko, Anton, Schlegel, Markus, Schmidt, Niels, Seibold, Sebastian, Skjøth, Carsten, Stengel, Elisa, Sutyrina, Svetlana, Syvänperä, Ilkka, Tedersoo, Leho, Timm, Jebidiah, Tipton, Laura, Toju, Hirokazu, Uscka-Perzanowska, Maria, van der Bank, Michelle, van der Bank, F, and Vandenbrink, Bryan

Subjects
Air Microbiology, Biodiversity, DNA, Fungal, Fungi, Mycorrhizae, Phylogeny, Seasons, Spatio-Temporal Analysis, Spores, Fungal, Temperature, Tropical Climate, Geographic Mapping
Abstract

Fungi are among the most diverse and ecologically important kingdoms in life. However, the distributional ranges of fungi remain largely unknown as do the ecological mechanisms that shape their distributions1,2. To provide an integrated view of the spatial and seasonal dynamics of fungi, we implemented a globally distributed standardized aerial sampling of fungal spores3. The vast majority of operational taxonomic units were detected within only one climatic zone, and the spatiotemporal patterns of species richness and community composition were mostly explained by annual mean air temperature. Tropical regions hosted the highest fungal diversity except for lichenized, ericoid mycorrhizal and ectomycorrhizal fungi, which reached their peak diversity in temperate regions. The sensitivity in climatic responses was associated with phylogenetic relatedness, suggesting that large-scale distributions of some fungal groups are partially constrained by their ancestral niche. There was a strong phylogenetic signal in seasonal sensitivity, suggesting that some groups of fungi have retained their ancestral trait of sporulating for only a short period. Overall, our results show that the hyperdiverse kingdom of fungi follows globally highly predictable spatial and temporal dynamics, with seasonality in both species richness and community composition increasing with latitude. Our study reports patterns resembling those described for other major groups of organisms, thus making a major contribution to the long-standing debate on whether organisms with a microbial lifestyle follow the global biodiversity paradigms known for macroorganisms4,5.

Published
2024

3. Survey on Datasets for Perception in Unstructured Outdoor Environments

Author

Mortimer, Peter and Maehlisch, Mirko

Subjects
Computer Science - Computer Vision and Pattern Recognition, Computer Science - Robotics
Abstract

Perception is an essential component of pipelines in field robotics. In this survey, we quantitatively compare publicly available datasets available in unstructured outdoor environments. We focus on datasets for common perception tasks in field robotics. Our survey categorizes and compares available research datasets. This survey also reports on relevant dataset characteristics to help practitioners determine which dataset fits best for their own application. We believe more consideration should be taken in choosing compatible annotation policies across the datasets in unstructured outdoor environments., Comment: Accepted to the IEEE ICRA Workshop on Field Robotics 2024

Published
2024

4. Global Spore Sampling Project: A global, standardized dataset of airborne fungal DNA.

Author

Ovaskainen, Otso, Abrego, Nerea, Furneaux, Brendan, Hardwick, Bess, Somervuo, Panu, Palorinne, Isabella, Andrew, Nigel, Babiy, Ulyana, Bao, Tan, Bazzano, Gisela, Bondarchuk, Svetlana, Bonebrake, Timothy, Brennan, Georgina, Bret-Harte, Syndonia, Bässler, Claus, Cagnolo, Luciano, Cameron, Erin, Chapurlat, Elodie, Creer, Simon, DAcqui, Luigi, de Vere, Natasha, Desprez-Loustau, Marie-Laure, Dongmo, Michel, Dyrholm Jacobsen, Ida, Fisher, Brian, Flores de Jesus, Miguel, Griffith, Gareth, Gritsuk, Anna, Gross, Andrin, Grudd, Håkan, Halme, Panu, Hanna, Rachid, Hansen, Jannik, Hansen, Lars, Hegbe, Apollon, Hill, Sarah, Hogg, Ian, Hultman, Jenni, Hyde, Kevin, Hynson, Nicole, Ivanova, Natalia, Karisto, Petteri, Kerdraon, Deirdre, Knorre, Anastasia, Krisai-Greilhuber, Irmgard, Kurhinen, Juri, Kuzmina, Masha, Lecomte, Nicolas, Lecomte, Erin, Loaiza, Viviana, Lundin, Erik, Meire, Alexander, Mešić, Armin, Miettinen, Otto, Monkhause, Norman, Mortimer, Peter, Müller, Jörg, Nilsson, R, Nonti, Puani, Nordén, Jenni, Nordén, Björn, Paz, Claudia, Pellikka, Petri, Pereira, Danilo, Petch, Geoff, Pitkänen, Juha-Matti, Popa, Flavius, Potter, Caitlin, Purhonen, Jenna, Pätsi, Sanna, Rafiq, Abdullah, Raharinjanahary, Dimby, Rakos, Niklas, Rathnayaka, Achala, Raundrup, Katrine, Rebriev, Yury, Rikkinen, Jouko, Rogers, Hanna, Rogovsky, Andrey, Rozhkov, Yuri, Runnel, Kadri, Saarto, Annika, Savchenko, Anton, Schlegel, Markus, Schmidt, Niels, Seibold, Sebastian, Skjøth, Carsten, Stengel, Elisa, Sutyrina, Svetlana, Syvänperä, Ilkka, Tedersoo, Leho, Timm, Jebidiah, Tipton, Laura, Toju, Hirokazu, Uscka-Perzanowska, Maria, van der Bank, Michelle, Herman van der Bank, F, Vandenbrink, Bryan, Ventura, Stefano, and Vignisson, Solvi

Subjects
Air Microbiology, Spores, Fungal, DNA, Fungal, Fungi, Biodiversity
Abstract

Novel methods for sampling and characterizing biodiversity hold great promise for re-evaluating patterns of life across the planet. The sampling of airborne spores with a cyclone sampler, and the sequencing of their DNA, have been suggested as an efficient and well-calibrated tool for surveying fungal diversity across various environments. Here we present data originating from the Global Spore Sampling Project, comprising 2,768 samples collected during two years at 47 outdoor locations across the world. Each sample represents fungal DNA extracted from 24 m3 of air. We applied a conservative bioinformatics pipeline that filtered out sequences that did not show strong evidence of representing a fungal species. The pipeline yielded 27,954 species-level operational taxonomic units (OTUs). Each OTU is accompanied by a probabilistic taxonomic classification, validated through comparison with expert evaluations. To examine the potential of the data for ecological analyses, we partitioned the variation in species distributions into spatial and seasonal components, showing a strong effect of the annual mean temperature on community composition.

Published
2024

5. The GOOSE Dataset for Perception in Unstructured Environments

Author

Mortimer, Peter, Hagmanns, Raphael, Granero, Miguel, Luettel, Thorsten, Petereit, Janko, and Wuensche, Hans-Joachim

Subjects
Computer Science - Computer Vision and Pattern Recognition, Computer Science - Machine Learning, Computer Science - Robotics
Abstract

The potential for deploying autonomous systems can be significantly increased by improving the perception and interpretation of the environment. However, the development of deep learning-based techniques for autonomous systems in unstructured outdoor environments poses challenges due to limited data availability for training and testing. To address this gap, we present the German Outdoor and Offroad Dataset (GOOSE), a comprehensive dataset specifically designed for unstructured outdoor environments. The GOOSE dataset incorporates 10 000 labeled pairs of images and point clouds, which are utilized to train a range of state-of-the-art segmentation models on both image and point cloud data. We open source the dataset, along with an ontology for unstructured terrain, as well as dataset standards and guidelines. This initiative aims to establish a common framework, enabling the seamless inclusion of existing datasets and a fast way to enhance the perception capabilities of various robots operating in unstructured environments. The dataset, pre-trained models for offroad perception, and additional documentation can be found at https://goose-dataset.de/., Comment: Preprint; Submitted to IEEE for review

Published
2023

7. Current trends, limitations and future research in the fungi?

Author

Hyde, Kevin D., Baldrian, Petr, Chen, Yanpeng, Thilini Chethana, K. W., De Hoog, Sybren, Doilom, Mingkwan, de Farias, Antonio R. Gomes, Gonçalves, Micael F. M., Gonkhom, Didsanutda, Gui, Heng, Hilário, Sandra, Hu, Yuwei, Jayawardena, Ruvishika S., Khyaju, Sabin, Kirk, Paul M., Kohout, Petr, Luangharn, Thatsanee, Maharachchikumbura, Sajeewa S. N., Manawasinghe, Ishara S., Mortimer, Peter E., Niego, Allen Grace T., Phonemany, Monthien, Sandargo, Birthe, Senanayake, Indunil C., Stadler, Marc, Surup, Frank, Thongklang, Naritsada, Wanasinghe, Dhanushka N., Bahkali, Ali H., and Walker, Arttapon

Published
2024
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8. TAS-NIR: A VIS+NIR Dataset for Fine-grained Semantic Segmentation in Unstructured Outdoor Environments

Author

Mortimer, Peter and Wuensche, Hans-Joachim

Subjects
Computer Science - Computer Vision and Pattern Recognition
Abstract

Vegetation Indices based on paired images of the visible color spectrum (VIS) and near infrared spectrum (NIR) have been widely used in remote sensing applications. These vegetation indices are extended for their application in autonomous driving in unstructured outdoor environments. In this domain we can combine traditional vegetation indices like the Normalized Difference Vegetation Index (NDVI) and Enhanced Vegetation Index (EVI) with Convolutional Neural Networks (CNNs) pre-trained on available VIS datasets. By laying a focus on learning calibrated CNN outputs, we can provide an approach to fuse known hand-crafted image features with CNN predictions for different domains as well. The method is evaluated on a VIS+NIR dataset of semantically annotated images in unstructured outdoor environments. The dataset is available at mucar3.de/iros2022-ppniv-tas-nir.

Published
2022

11. A Fine-Grained Dataset and its Efficient Semantic Segmentation for Unstructured Driving Scenarios

Author

Metzger, Kai A., Mortimer, Peter, and Wuensche, Hans-Joachim

Subjects
Computer Science - Computer Vision and Pattern Recognition, Computer Science - Machine Learning
Abstract

Research in autonomous driving for unstructured environments suffers from a lack of semantically labeled datasets compared to its urban counterpart. Urban and unstructured outdoor environments are challenging due to the varying lighting and weather conditions during a day and across seasons. In this paper, we introduce TAS500, a novel semantic segmentation dataset for autonomous driving in unstructured environments. TAS500 offers fine-grained vegetation and terrain classes to learn drivable surfaces and natural obstacles in outdoor scenes effectively. We evaluate the performance of modern semantic segmentation models with an additional focus on their efficiency. Our experiments demonstrate the advantages of fine-grained semantic classes to improve the overall prediction accuracy, especially along the class boundaries. The dataset and pretrained model are available at mucar3.de/icpr2020-tas500., Comment: Accepted at International Conference on Pattern Recognition 2020 (ICPR). For the associated project page, see https://www.mucar3.de/icpr2020-tas500/index.html

Published
2021

15. Discovery of novel fungal species and pathogens on bat carcasses in a cave in Yunnan Province, China

Author

Karunarathna, Samantha Chandranath, Dong, Yang, Karasaki, Seigi, Tibpromma, Saowaluck, Hyde, Kevin David, Lumyong, Saisamorn, Xu, Jianchu, Sheng, Jun, and Mortimer, Peter Edward

Subjects
Biotechnology, Infectious Diseases, Emerging Infectious Diseases, Infection, Good Health and Well Being, Animals, Body Remains, Caves, China, Chiroptera, Fungal Proteins, Fungi, Humans, Multilocus Sequence Typing, Mycological Typing Techniques, Mycotoxicosis, Phylogeny, Sequence Analysis, DNA, new taxa, Fusarium incarnatum, Mucor hiemalis, Mortierella rhinolophicola, Mortierella yunnanensis, Mortierella multispora, Neocosmospora pallidimors, Trichoderma harzianum, Fusarium incarnatum, Mortierella multispora, Mortierella rhinolophicola, Mortierella yunnanensis, Mucor hiemalis, Neocosmospora pallidimors, Trichoderma harzianum, Microbiology
Abstract

Virulent infectious fungal diseases, in natural and managed landscapes, are increasing. Fungal diseases in humans, animals and plants have caused die-off and extinction events and have become a threat to food security. A caving expedition in Yunnan Province, China, revealed two bat carcasses covered in fungal mycelia. Eleven fungal isolates were obtained from these bat carcasses, and morphological observations and multigene phylogenetic analyses revealed they were Fusarium incarnatum, Mucor hiemalis and Trichoderma harzianum and four new species, Mortierella rhinolophicola, M. multispora, M. yunnanensis and Neocosmospora pallidimors. One of the more alarming findings is that a number of infections related to Neocosmospora, previously associated with human and animal mycotoxicoses, are reported to be increasing, and here we present a new species from this genus, isolated from dead bats. Due to the ecosystem services provided by bats, and the close relationship between bats and humans, future research should focus on the impacts and significance of N. pallidimors to human and animal health, examining its pathogenicity and secondary metabolites. Taxonomic descriptions, color images of the habitat, in situ samples, microstructures and cultures are presented. SEM photographs of microstructures and phylogenetic trees showing the placement of new and known species are also provided.

Published
2020

16. Ten decadal advances in fungal biology leading towards human well-being

Author

Mapook, Ausana, Hyde, Kevin D., Hassan, Khadija, Kemkuignou, Blondelle Matio, Čmoková, Adéla, Surup, Frank, Kuhnert, Eric, Paomephan, Pathompong, Cheng, Tian, de Hoog, Sybren, Song, Yinggai, Jayawardena, Ruvishika S., Al-Hatmi, Abdullah M. S., Mahmoudi, Tokameh, Ponts, Nadia, Studt-Reinhold, Lena, Richard-Forget, Florence, Chethana, K. W. Thilini, Harishchandra, Dulanjalee L., Mortimer, Peter E., Li, Huili, Lumyong, Saisamorm, Aiduang, Worawoot, Kumla, Jaturong, Suwannarach, Nakarin, Bhunjun, Chitrabhanu S., Yu, Feng-Ming, Zhao, Qi, Schaefer, Doug, and Stadler, Marc

Published
2022
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18. Use of fluorescence imaging during lymphatic surgery: A Delphi survey of experts worldwide

Author

Dip, Fernando, Alexandru, Nistor, Amore, Miguel, Becker, Corinne, Belgrado, Jean-Paul, Bourgeois, Pierre, Chang, Edward I-Fei, Koshima, Isao, Liberale, Gabriel, Masia, Jaume, Mortimer, Peter, Neligan, Peter, Batista, Bernardo Nogueira, Olszewski, Waldemar, Salvia, Sophia Alexia, Suami, Hiroo, Vankerckhove, Sophie, Yamamoto, Takumi, Lo Menzo, Emanuele, White, Kevin P., and Rosenthal, Raul J.

Published
2022
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19. Exploring ascomycete diversity in Yunnan II: Introducing three novel species in the suborder Massarineae (Dothideomycetes, Pleosporales) from fern and grasses

Author

Phookamsak, Rungtiwa, primary, Hongsanan, Sinang, additional, Bhat, Darbhe Jayarama, additional, Wanasinghe, Dhanushka N., additional, Promputtha, Itthayakorn, additional, Suwannarach, Nakarin, additional, Kumla, Jaturong, additional, Xie, Ning, additional, Dawoud, Turki M., additional, Mortimer, Peter E., additional, Xu, Jianchu, additional, and Lumyong, Saisamorn, additional

Published
2024
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20. Figure 3 from: Phookamsak R, Hongsanan S, Bhat DJ, Wanasinghe DN, Promputtha I, Suwannarach N, Kumla J, Xie N, Dawoud TM, Mortimer PE, Xu J, Lumyong S (2024) Exploring ascomycete diversity in Yunnan II: Introducing three novel species in the suborder Massarineae (Dothideomycetes, Pleosporales) from fern and grasses. In: Wijayawardene N, Karunarathna S, Fan X-L, Li Q-R (Eds) Taxonomy and secondary metabolites of wood-associated fungi. MycoKeys 104: 9-50. https://doi.org/10.3897/mycokeys.104.112149

Author

Phookamsak, Rungtiwa, primary, Hongsanan, Sinang, additional, Bhat, Darbhe Jayarama, additional, Wanasinghe, Dhanushka N., additional, Promputtha, Itthayakorn, additional, Suwannarach, Nakarin, additional, Kumla, Jaturong, additional, Xie, Ning, additional, Dawoud, Turki M., additional, Mortimer, Peter E., additional, Xu, Jianchu, additional, and Lumyong, Saisamorn, additional

Published
2024
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21. Figure 4 from: Phookamsak R, Hongsanan S, Bhat DJ, Wanasinghe DN, Promputtha I, Suwannarach N, Kumla J, Xie N, Dawoud TM, Mortimer PE, Xu J, Lumyong S (2024) Exploring ascomycete diversity in Yunnan II: Introducing three novel species in the suborder Massarineae (Dothideomycetes, Pleosporales) from fern and grasses. In: Wijayawardene N, Karunarathna S, Fan X-L, Li Q-R (Eds) Taxonomy and secondary metabolites of wood-associated fungi. MycoKeys 104: 9-50. https://doi.org/10.3897/mycokeys.104.112149

Author

Phookamsak, Rungtiwa, primary, Hongsanan, Sinang, additional, Bhat, Darbhe Jayarama, additional, Wanasinghe, Dhanushka N., additional, Promputtha, Itthayakorn, additional, Suwannarach, Nakarin, additional, Kumla, Jaturong, additional, Xie, Ning, additional, Dawoud, Turki M., additional, Mortimer, Peter E., additional, Xu, Jianchu, additional, and Lumyong, Saisamorn, additional

Published
2024
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22. Figure 6 from: Phookamsak R, Hongsanan S, Bhat DJ, Wanasinghe DN, Promputtha I, Suwannarach N, Kumla J, Xie N, Dawoud TM, Mortimer PE, Xu J, Lumyong S (2024) Exploring ascomycete diversity in Yunnan II: Introducing three novel species in the suborder Massarineae (Dothideomycetes, Pleosporales) from fern and grasses. In: Wijayawardene N, Karunarathna S, Fan X-L, Li Q-R (Eds) Taxonomy and secondary metabolites of wood-associated fungi. MycoKeys 104: 9-50. https://doi.org/10.3897/mycokeys.104.112149

Author

Phookamsak, Rungtiwa, primary, Hongsanan, Sinang, additional, Bhat, Darbhe Jayarama, additional, Wanasinghe, Dhanushka N., additional, Promputtha, Itthayakorn, additional, Suwannarach, Nakarin, additional, Kumla, Jaturong, additional, Xie, Ning, additional, Dawoud, Turki M., additional, Mortimer, Peter E., additional, Xu, Jianchu, additional, and Lumyong, Saisamorn, additional

Published
2024
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23. Figure 2 from: Phookamsak R, Hongsanan S, Bhat DJ, Wanasinghe DN, Promputtha I, Suwannarach N, Kumla J, Xie N, Dawoud TM, Mortimer PE, Xu J, Lumyong S (2024) Exploring ascomycete diversity in Yunnan II: Introducing three novel species in the suborder Massarineae (Dothideomycetes, Pleosporales) from fern and grasses. In: Wijayawardene N, Karunarathna S, Fan X-L, Li Q-R (Eds) Taxonomy and secondary metabolites of wood-associated fungi. MycoKeys 104: 9-50. https://doi.org/10.3897/mycokeys.104.112149

Author

Phookamsak, Rungtiwa, primary, Hongsanan, Sinang, additional, Bhat, Darbhe Jayarama, additional, Wanasinghe, Dhanushka N., additional, Promputtha, Itthayakorn, additional, Suwannarach, Nakarin, additional, Kumla, Jaturong, additional, Xie, Ning, additional, Dawoud, Turki M., additional, Mortimer, Peter E., additional, Xu, Jianchu, additional, and Lumyong, Saisamorn, additional

Published
2024
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24. Figure 1 from: Phookamsak R, Hongsanan S, Bhat DJ, Wanasinghe DN, Promputtha I, Suwannarach N, Kumla J, Xie N, Dawoud TM, Mortimer PE, Xu J, Lumyong S (2024) Exploring ascomycete diversity in Yunnan II: Introducing three novel species in the suborder Massarineae (Dothideomycetes, Pleosporales) from fern and grasses. In: Wijayawardene N, Karunarathna S, Fan X-L, Li Q-R (Eds) Taxonomy and secondary metabolites of wood-associated fungi. MycoKeys 104: 9-50. https://doi.org/10.3897/mycokeys.104.112149

Author

Phookamsak, Rungtiwa, primary, Hongsanan, Sinang, additional, Bhat, Darbhe Jayarama, additional, Wanasinghe, Dhanushka N., additional, Promputtha, Itthayakorn, additional, Suwannarach, Nakarin, additional, Kumla, Jaturong, additional, Xie, Ning, additional, Dawoud, Turki M., additional, Mortimer, Peter E., additional, Xu, Jianchu, additional, and Lumyong, Saisamorn, additional

Published
2024
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25. Figure 5 from: Phookamsak R, Hongsanan S, Bhat DJ, Wanasinghe DN, Promputtha I, Suwannarach N, Kumla J, Xie N, Dawoud TM, Mortimer PE, Xu J, Lumyong S (2024) Exploring ascomycete diversity in Yunnan II: Introducing three novel species in the suborder Massarineae (Dothideomycetes, Pleosporales) from fern and grasses. In: Wijayawardene N, Karunarathna S, Fan X-L, Li Q-R (Eds) Taxonomy and secondary metabolites of wood-associated fungi. MycoKeys 104: 9-50. https://doi.org/10.3897/mycokeys.104.112149

Author

Phookamsak, Rungtiwa, primary, Hongsanan, Sinang, additional, Bhat, Darbhe Jayarama, additional, Wanasinghe, Dhanushka N., additional, Promputtha, Itthayakorn, additional, Suwannarach, Nakarin, additional, Kumla, Jaturong, additional, Xie, Ning, additional, Dawoud, Turki M., additional, Mortimer, Peter E., additional, Xu, Jianchu, additional, and Lumyong, Saisamorn, additional

Published
2024
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26. The Global Soil Mycobiome consortium dataset for boosting fungal diversity research

Author

Tedersoo, Leho, Mikryukov, Vladimir, Anslan, Sten, Bahram, Mohammad, Khalid, Abdul Nasir, Corrales, Adriana, Agan, Ahto, Vasco-Palacios, Aída-M., Saitta, Alessandro, Antonelli, Alexandre, Rinaldi, Andrea C., Verbeken, Annemieke, Sulistyo, Bobby P., Tamgnoue, Boris, Furneaux, Brendan, Ritter, Camila Duarte, Nyamukondiwa, Casper, Sharp, Cathy, Marín, César, Dai, D. Q., Gohar, Daniyal, Sharmah, Dipon, Biersma, Elisabeth Machteld, Cameron, Erin K., De Crop, Eske, Otsing, Eveli, Davydov, Evgeny A., Albornoz, Felipe E., Brearley, Francis Q., Buegger, Franz, Gates, Genevieve, Zahn, Geoffrey, Bonito, Gregory, Hiiesalu, Indrek, Hiiesalu, Inga, Zettur, Irma, Barrio, Isabel C., Pärn, Jaan, Heilmann-Clausen, Jacob, Ankuda, Jelena, Kupagme, John Y., Sarapuu, Joosep, Maciá-Vicente, Jose G., Fovo, Joseph Djeugap, Geml, József, Alatalo, Juha M., Alvarez-Manjarrez, Julieta, Monkai, Jutamart, Põldmaa, Kadri, Runnel, Kadri, Adamson, Kalev, Bråthen, Kari A., Pritsch, Karin, Tchan, Kassim I., Armolaitis, Kęstutis, Hyde, Kevin D., Newsham, Kevin K., Panksep, Kristel, Adebola, Lateef A., Lamit, Louis J., Saba, Malka, da Silva Cáceres, Marcela E., Tuomi, Maria, Gryzenhout, Marieka, Bauters, Marijn, Bálint, Miklós, Wijayawardene, Nalin, Hagh-Doust, Niloufar, Yorou, Nourou S., Kurina, Olavi, Mortimer, Peter E., Meidl, Peter, Nilsson, R. Henrik, Puusepp, Rasmus, Casique-Valdés, Rebeca, Drenkhan, Rein, Garibay-Orijel, Roberto, Godoy, Roberto, Alfarraj, Saleh, Rahimlou, Saleh, Põlme, Sergei, Dudov, Sergey V., Mundra, Sunil, Ahmed, Talaat, Netherway, Tarquin, Henkel, Terry W., Roslin, Tomas, Fedosov, Vladimir E., Onipchenko, Vladimir G., Yasanthika, W. A. Erandi, Lim, Young Woon, Piepenbring, Meike, Klavina, Darta, Kõljalg, Urmas, and Abarenkov, Kessy

Published
2021
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27. Fungal diversity notes 1387–1511: taxonomic and phylogenetic contributions on genera and species of fungal taxa

Author

Boonmee, Saranyaphat, Wanasinghe, Dhanushka N., Calabon, Mark S., Huanraluek, Naruemon, Chandrasiri, Sajini K. U., Jones, Gareth E. B., Rossi, Walter, Leonardi, Marco, Singh, Sanjay K., Rana, Shiwali, Singh, Paras N., Maurya, Deepak K., Lagashetti, Ajay C., Choudhary, Deepika, Dai, Yu-Cheng, Zhao, Chang-Lin, Mu, Yan-Hong, Yuan, Hai-Sheng, He, Shuang-Hui, Phookamsak, Rungtiwa, Jiang, Hong-Bo, Martín, María P., Dueñas, Margarita, Telleria, M. Teresa, Kałucka, Izabela L., Jagodziński, Andrzej M., Liimatainen, Kare, Pereira, Diana S., Phillips, Alan J. L., Suwannarach, Nakarin, Kumla, Jaturong, Khuna, Surapong, Lumyong, Saisamorn, Potter, Tarynn B., Shivas, Roger G., Sparks, Adam H., Vaghefi, Niloofar, Abdel-Wahab, Mohamed A., Abdel-Aziz, Faten A., Li, Guo-Jie, Lin, Wen-Fei, Singh, Upendra, Bhatt, Rajendra P., Lee, Hyang Burm, Nguyen, Thuong T. T., Kirk, Paul M., Dutta, Arun Kumar, Acharya, Krishnendu, Sarma, V. Venkateswara, Niranjan, M., Rajeshkumar, Kunhiraman C., Ashtekar, Nikhil, Lad, Sneha, Wijayawardene, Nalin N., Bhat, Darbe J., Xu, Rong-Ju, Wijesinghe, Subodini N., Shen, Hong-Wei, Luo, Zong-Long, Zhang, Jing-Yi, Sysouphanthong, Phongeun, Thongklang, Naritsada, Bao, Dan-Feng, Aluthmuhandiram, Janith V. S., Abdollahzadeh, Jafar, Javadi, Alireza, Dovana, Francesco, Usman, Muhammad, Khalid, Abdul Nasir, Dissanayake, Asha J., Telagathoti, Anusha, Probst, Maraike, Peintner, Ursula, Garrido-Benavent, Isaac, Bóna, Lilla, Merényi, Zsolt, Boros, Lajos, Zoltán, Bratek, Stielow, J. Benjamin, Jiang, Ning, Tian, Cheng-Ming, Shams, Esmaeil, Dehghanizadeh, Farzaneh, Pordel, Adel, Javan-Nikkhah, Mohammad, Denchev, Teodor T., Denchev, Cvetomir M., Kemler, Martin, Begerow, Dominik, Deng, Chun-Ying, Harrower, Emma, Bozorov, Tohir, Kholmuradova, Tutigul, Gafforov, Yusufjon, Abdurazakov, Aziz, Xu, Jian-Chu, Mortimer, Peter E., Ren, Guang-Cong, Jeewon, Rajesh, Maharachchikumbura, Sajeewa S. N., Phukhamsakda, Chayanard, Mapook, Ausana, and Hyde, Kevin D.

Published
2021
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28. Janus-faced EPHB4-associated disorders: novel pathogenic variants and unreported intrafamilial overlapping phenotypes

Author

Martin-Almedina, Silvia, Ogmen, Kazim, Sackey, Ege, Grigoriadis, Dionysios, Karapouliou, Christina, Nadarajah, Noeline, Ebbing, Cathrine, Lord, Jenny, Mellis, Rhiannon, Kortuem, Fanny, Dinulos, Mary Beth, Polun, Cassandra, Bale, Sherri, Atton, Giles, Robinson, Alexandra, Reigstad, Hallvard, Houge, Gunnar, von der Wense, Axel, Becker, Wolf-Henning, Jeffery, Steve, Mortimer, Peter S., Gordon, Kristiana, Josephs, Katherine S., Robart, Sarah, Kilby, Mark D., Vallee, Stephanie, Gorski, Jerome L., Hempel, Maja, Berland, Siren, Mansour, Sahar, and Ostergaard, Pia

Published
2021
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29. Global Spore Sampling Project:A global, standardized dataset of airborne fungal DNA

Author

Ovaskainen, Otso, Abrego, Nerea, Furneaux, Brendan, Hardwick, Bess, Somervuo, Panu, Palorinne, Isabella, Andrew, Nigel R, Babiy, Ulyana V, Bao, Tan, Bazzano, Gisela, Bondarchuk, Svetlana N, Bonebrake, Timothy C, Brennan, Georgina L, Bret-Harte, Syndonia, Bässler, Claus, Cagnolo, Luciano, Cameron, Erin K, Chapurlat, Elodie, Creer, Simon, D'Acqui, Luigi P, de Vere, Natasha, Desprez-Loustau, Marie-Laure, Dongmo, Michel A K, Dyrholm Jacobsen, Ida B, Fisher, Brian L, Flores de Jesus, Miguel, Gilbert, Gregory S, Griffith, Gareth W, Gritsuk, Anna A, Gross, Andrin, Grudd, Håkan, Halme, Panu, Hanna, Rachid, Hansen, Jannik, Hansen, Lars Holst, Hegbe, Apollon D M T, Hill, Sarah, Hogg, Ian D, Hultman, Jenni, Hyde, Kevin D, Hynson, Nicole A, Ivanova, Natalia, Karisto, Petteri, Kerdraon, Deirdre, Knorre, Anastasia, Krisai-Greilhuber, Irmgard, Kurhinen, Juri, Kuzmina, Masha, Lecomte, Nicolas, Lecomte, Erin, Loaiza, Viviana, Lundin, Erik, Meire, Alexander, Mešić, Armin, Miettinen, Otto, Monkhause, Norman, Mortimer, Peter, Müller, Jörg, Nilsson, R Henrik, Nonti, Puani Yannick C, Nordén, Jenni, Nordén, Björn, Paz, Claudia, Pellikka, Petri, Pereira, Danilo, Petch, Geoff, Pitkänen, Juha-Matti, Popa, Flavius, Potter, Caitlin, Purhonen, Jenna, Pätsi, Sanna, Rafiq, Abdullah, Raharinjanahary, Dimby, Rakos, Niklas, Rathnayaka, Achala R, Raundrup, Katrine, Rebriev, Yury A, Rikkinen, Jouko, Rogers, Hanna M K, Rogovsky, Andrey, Rozhkov, Yuri, Runnel, Kadri, Saarto, Annika, Savchenko, Anton, Schlegel, Markus, Schmidt, Niels Martin, Seibold, Sebastian, Skjøth, Carsten, Stengel, Elisa, Sutyrina, Svetlana V, Syvänperä, Ilkka, Tedersoo, Leho, Timm, Jebidiah, Tipton, Laura, Toju, Hirokazu, Uscka-Perzanowska, Maria, van der Bank, Michelle, Herman van der Bank, F, Vandenbrink, Bryan, Ventura, Stefano, Vignisson, Solvi R, Wang, Xiaoyang, Weisser, Wolfgang W, Wijesinghe, Subodini N, Joseph Wright, S, Yang, Chunyan, Yorou, Nourou S, Young, Amanda, Yu, Douglas W, Zakharov, Evgeny V, Hebert, Paul D N, Roslin, Tomas, Ovaskainen, Otso, Abrego, Nerea, Furneaux, Brendan, Hardwick, Bess, Somervuo, Panu, Palorinne, Isabella, Andrew, Nigel R, Babiy, Ulyana V, Bao, Tan, Bazzano, Gisela, Bondarchuk, Svetlana N, Bonebrake, Timothy C, Brennan, Georgina L, Bret-Harte, Syndonia, Bässler, Claus, Cagnolo, Luciano, Cameron, Erin K, Chapurlat, Elodie, Creer, Simon, D'Acqui, Luigi P, de Vere, Natasha, Desprez-Loustau, Marie-Laure, Dongmo, Michel A K, Dyrholm Jacobsen, Ida B, Fisher, Brian L, Flores de Jesus, Miguel, Gilbert, Gregory S, Griffith, Gareth W, Gritsuk, Anna A, Gross, Andrin, Grudd, Håkan, Halme, Panu, Hanna, Rachid, Hansen, Jannik, Hansen, Lars Holst, Hegbe, Apollon D M T, Hill, Sarah, Hogg, Ian D, Hultman, Jenni, Hyde, Kevin D, Hynson, Nicole A, Ivanova, Natalia, Karisto, Petteri, Kerdraon, Deirdre, Knorre, Anastasia, Krisai-Greilhuber, Irmgard, Kurhinen, Juri, Kuzmina, Masha, Lecomte, Nicolas, Lecomte, Erin, Loaiza, Viviana, Lundin, Erik, Meire, Alexander, Mešić, Armin, Miettinen, Otto, Monkhause, Norman, Mortimer, Peter, Müller, Jörg, Nilsson, R Henrik, Nonti, Puani Yannick C, Nordén, Jenni, Nordén, Björn, Paz, Claudia, Pellikka, Petri, Pereira, Danilo, Petch, Geoff, Pitkänen, Juha-Matti, Popa, Flavius, Potter, Caitlin, Purhonen, Jenna, Pätsi, Sanna, Rafiq, Abdullah, Raharinjanahary, Dimby, Rakos, Niklas, Rathnayaka, Achala R, Raundrup, Katrine, Rebriev, Yury A, Rikkinen, Jouko, Rogers, Hanna M K, Rogovsky, Andrey, Rozhkov, Yuri, Runnel, Kadri, Saarto, Annika, Savchenko, Anton, Schlegel, Markus, Schmidt, Niels Martin, Seibold, Sebastian, Skjøth, Carsten, Stengel, Elisa, Sutyrina, Svetlana V, Syvänperä, Ilkka, Tedersoo, Leho, Timm, Jebidiah, Tipton, Laura, Toju, Hirokazu, Uscka-Perzanowska, Maria, van der Bank, Michelle, Herman van der Bank, F, Vandenbrink, Bryan, Ventura, Stefano, Vignisson, Solvi R, Wang, Xiaoyang, Weisser, Wolfgang W, Wijesinghe, Subodini N, Joseph Wright, S, Yang, Chunyan, Yorou, Nourou S, Young, Amanda, Yu, Douglas W, Zakharov, Evgeny V, Hebert, Paul D N, and Roslin, Tomas

Abstract

Novel methods for sampling and characterizing biodiversity hold great promise for re-evaluating patterns of life across the planet. The sampling of airborne spores with a cyclone sampler, and the sequencing of their DNA, have been suggested as an efficient and well-calibrated tool for surveying fungal diversity across various environments. Here we present data originating from the Global Spore Sampling Project, comprising 2,768 samples collected during two years at 47 outdoor locations across the world. Each sample represents fungal DNA extracted from 24 m 3 of air. We applied a conservative bioinformatics pipeline that filtered out sequences that did not show strong evidence of representing a fungal species. The pipeline yielded 27,954 species-level operational taxonomic units (OTUs). Each OTU is accompanied by a probabilistic taxonomic classification, validated through comparison with expert evaluations. To examine the potential of the data for ecological analyses, we partitioned the variation in species distributions into spatial and seasonal components, showing a strong effect of the annual mean temperature on community composition.

Published
2024

30. Morphology, phylogeny, and polyurethane degrading ability of Lasiodiplodia iraniensis and Mortierella alpina.

Author

Xu, Rui-Fang, Tibpromma, Saowaluck, Karunarathna, Samantha C., Hyde, Kevin D., Phukhamsakda, Chayanard, Okal, Eyalira J., Dai, Dong-Qin, Chukeatirote, Ekachai, Khan, Sehroon, Elgorban, Abdallah M., and Mortimer, Peter E.

Subjects
SCANNING electron microscopes, PLASTICS, SCANNING electron microscopy, MORTIERELLA, AGAR, BIODEGRADABLE plastics
Abstract

Millions of tons of plastic products are produced globally each year; however, the low degradation rate of plastics results in an accumulation of these products in almost every ecosystem on the planet, causing enormous environmental harm. In this study, we isolated three fungal strains found growing on a piece of foam and sought to determine if these fungi have the capacity to degrade plastic. According to multigene (ITS, LSU, TEF1-α and TUB2) phylogenetic analyses and morphological studies, the three fungal strains were identified as two distinct species: Lasiodiplodia iraniensis and Mortierella alpina. The strains were inoculated on potato dextrose agar (PDA), malt extract agar (MEA), and malt agar medium containing chloramphenicol (CMEA) and covered with polyurethane (PU) films and incubated for four months. It was found that Mortierella alpina (ZHKUCC 22–0283) contributed to the PU mass loss of 26.30% on CMEA at 32°C, while Lasiodiplodia iraniensis (ZHKUCC 22–0282) accounted for the PU mass loss of 13.55% on MEA at 32°C. The surface hyphae were washed off by the PU films, and scanning electron microscope (SEM) imaging was used to check the fungal degradation of the PU films. Full descriptions, illustrations, phylogenetic trees to show the position of the two fungal species and SEM images of PU films are provided. [ABSTRACT FROM AUTHOR]

Published
2024
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31. Supplementary Table S4 from Phase I/II Study of the WEE1 Inhibitor Adavosertib (AZD1775) in Combination with Carboplatin in Children with Advanced Malignancies: Arm C of the AcSé-ESMART Trial

Author

Gatz, Susanne A., primary, Harttrampf, Anne C., primary, Brard, Caroline, primary, Bautista, Francisco, primary, André, Nicolas, primary, Abbou, Samuel, primary, Rubino, Jonathan, primary, Rondof, Windy, primary, Deloger, Marc, primary, Rübsam, Marc, primary, Marshall, Lynley V., primary, Hübschmann, Daniel, primary, Nebchi, Souad, primary, Aerts, Isabelle, primary, Thebaud, Estelle, primary, De Carli, Emilie, primary, Defachelles, Anne Sophie, primary, Paoletti, Xavier, primary, Godin, Robert, primary, Miah, Kowser, primary, Mortimer, Peter G.S., primary, Vassal, Gilles, primary, and Geoerger, Birgit, primary

Published
2024
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32. Data from Phase I/II Study of the WEE1 Inhibitor Adavosertib (AZD1775) in Combination with Carboplatin in Children with Advanced Malignancies: Arm C of the AcSé-ESMART Trial

Author

Gatz, Susanne A., primary, Harttrampf, Anne C., primary, Brard, Caroline, primary, Bautista, Francisco, primary, André, Nicolas, primary, Abbou, Samuel, primary, Rubino, Jonathan, primary, Rondof, Windy, primary, Deloger, Marc, primary, Rübsam, Marc, primary, Marshall, Lynley V., primary, Hübschmann, Daniel, primary, Nebchi, Souad, primary, Aerts, Isabelle, primary, Thebaud, Estelle, primary, De Carli, Emilie, primary, Defachelles, Anne Sophie, primary, Paoletti, Xavier, primary, Godin, Robert, primary, Miah, Kowser, primary, Mortimer, Peter G.S., primary, Vassal, Gilles, primary, and Geoerger, Birgit, primary

Published
2024
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33. Supplementary Figure S1 from Phase I/II Study of the WEE1 Inhibitor Adavosertib (AZD1775) in Combination with Carboplatin in Children with Advanced Malignancies: Arm C of the AcSé-ESMART Trial

Author

Gatz, Susanne A., primary, Harttrampf, Anne C., primary, Brard, Caroline, primary, Bautista, Francisco, primary, André, Nicolas, primary, Abbou, Samuel, primary, Rubino, Jonathan, primary, Rondof, Windy, primary, Deloger, Marc, primary, Rübsam, Marc, primary, Marshall, Lynley V., primary, Hübschmann, Daniel, primary, Nebchi, Souad, primary, Aerts, Isabelle, primary, Thebaud, Estelle, primary, De Carli, Emilie, primary, Defachelles, Anne Sophie, primary, Paoletti, Xavier, primary, Godin, Robert, primary, Miah, Kowser, primary, Mortimer, Peter G.S., primary, Vassal, Gilles, primary, and Geoerger, Birgit, primary

Published
2024
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37. Supplementary material 1 from: Wanasinghe DN, Nimalrathna TS, Qin Xian L, Faraj TK, Xu J, Mortimer PE (2024) Taxonomic novelties and global biogeography of Montagnula (Ascomycota, Didymosphaeriaceae). MycoKeys 101: 191-232. https://doi.org/10.3897/mycokeys.101.113259

Author

Wanasinghe, Dhanushka N., primary, Nimalrathna, Thilina S., additional, Qin Xian, Li, additional, Faraj, Turki Kh., additional, Xu, Jianchu, additional, and Mortimer, Peter E., additional

Published
2024
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47. Phase I/II Study of the WEE1 Inhibitor Adavosertib (AZD1775) in Combination with Carboplatin in Children with Advanced Malignancies: Arm C of the AcSé-ESMART Trial

Author

Gatz, Susanne A., primary, Harttrampf, Anne C., additional, Brard, Caroline, additional, Bautista, Francisco, additional, André, Nicolas, additional, Abbou, Samuel, additional, Rubino, Jonathan, additional, Rondof, Windy, additional, Deloger, Marc, additional, Rübsam, Marc, additional, Marshall, Lynley V., additional, Hübschmann, Daniel, additional, Nebchi, Souad, additional, Aerts, Isabelle, additional, Thebaud, Estelle, additional, De Carli, Emilie, additional, Defachelles, Anne Sophie, additional, Paoletti, Xavier, additional, Godin, Robert, additional, Miah, Kowser, additional, Mortimer, Peter G.S., additional, Vassal, Gilles, additional, and Geoerger, Birgit, additional

Published
2023
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48. Connecting the multiple dimensions of global soil fungal diversity

Author

Mikryukov, Vladimir, primary, Dulya, Olesya, additional, Zizka, Alexander, additional, Bahram, Mohammad, additional, Hagh-Doust, Niloufar, additional, Anslan, Sten, additional, Prylutskyi, Oleh, additional, Delgado-Baquerizo, Manuel, additional, Maestre, Fernando T., additional, Nilsson, Henrik, additional, Pärn, Jaan, additional, Öpik, Maarja, additional, Moora, Mari, additional, Zobel, Martin, additional, Espenberg, Mikk, additional, Mander, Ülo, additional, Khalid, Abdul Nasir, additional, Corrales, Adriana, additional, Agan, Ahto, additional, Vasco-Palacios, Aída-M., additional, Saitta, Alessandro, additional, Rinaldi, Andrea, additional, Verbeken, Annemieke, additional, Sulistyo, Bobby, additional, Tamgnoue, Boris, additional, Furneaux, Brendan, additional, Duarte Ritter, Camila, additional, Nyamukondiwa, Casper, additional, Sharp, Cathy, additional, Marín, César, additional, Gohar, Daniyal, additional, Klavina, Darta, additional, Sharmah, Dipon, additional, Dai, Dong-Qin, additional, Nouhra, Eduardo, additional, Biersma, Elisabeth Machteld, additional, Rähn, Elisabeth, additional, Cameron, Erin, additional, De Crop, Eske, additional, Otsing, Eveli, additional, Davydov, Evgeny, additional, Albornoz, Felipe, additional, Brearley, Francis, additional, Buegger, Franz, additional, Zahn, Geoffrey, additional, Bonito, Gregory, additional, Hiiesalu, Inga, additional, Barrio, Isabel, additional, Heilmann-Clausen, Jacob, additional, Ankuda, Jelena, additional, Doležal, Jiri, additional, Kupagme, John, additional, Maciá-Vicente, Jose, additional, Djeugap Fovo, Joseph, additional, Geml, József, additional, Alatalo, Juha, additional, Alvarez-Manjarrez, Julieta, additional, Põldmaa, Kadri, additional, Runnel, Kadri, additional, Adamson, Kalev, additional, Bråthen, Kari-Anne, additional, Pritsch, Karin, additional, Tchan Issifou, Kassim, additional, Armolaitis, Kęstutis, additional, Hyde, Kevin, additional, Newsham, Kevin K., additional, Panksep, Kristel, additional, Lateef, Adebola Azeez, additional, Hansson, Linda, additional, Lamit, Louis, additional, Saba, Malka, additional, Tuomi, Maria, additional, Gryzenhout, Marieka, additional, Bauters, Marijn, additional, Piepenbring, Meike, additional, Wijayawardene, Nalin N., additional, Yorou, Nourou, additional, Kurina, Olavi, additional, Mortimer, Peter, additional, Meidl, Peter, additional, Kohout, Petr, additional, Puusepp, Rasmus, additional, Drenkhan, Rein, additional, Garibay-Orijel, Roberto, additional, Godoy, Roberto, additional, Alkahtani, Saad, additional, Rahimlou, Saleh, additional, Dudov, Sergey, additional, Põlme, Sergei, additional, Ghosh, Soumya, additional, Mundra, Sunil, additional, Ahmed, Talaat, additional, Netherway, Tarquin, additional, Henkel, Terry, additional, Roslin, Tomas, additional, Nteziryayo, Vincent, additional, Fedosov, Vladimir, additional, Onipchenko, Vladimir, additional, Yasanthika, Weeragalle Arachchillage Erandi, additional, Lim, Young, additional, Van Nuland, Michael, additional, Soudzilovskaia, Nadejda, additional, Antonelli, Alexandre, additional, Kõljalg, Urmas, additional, Abarenkov, Kessy, additional, and Tedersoo, Leho, additional

Published
2023
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50. Connecting the multiple dimensions of global soil fungal diversity

Author

Estonian Science Foundation, Estonian Research Council, Novo Nordisk Foundation, Baltic Research Cooperation Programme, King Saud University, European Commission, British Ecological Society, Ministerio de Ciencia e Innovación (España), Agencia Estatal de Investigación (España), Generalitat Valenciana, Swedish Research Council, Ghent University, Federal Ministry of Education and Research (Germany), Fondo Nacional de Desarrollo Científico y Tecnológico (Chile), Academy of Finland, National Science Foundation (US), Czech Science Foundation, Carlsberg Foundation, Qatar Petroleum, Ministry of Science and Higher Education of the Russian Federation, Universidad Nacional de Córdoba (Argentina), Yunnan Province, Leopold III-Fonds, Research Foundation - Flanders, Hungarian Academy of Sciences, Botswana International University of Science and Technology, Higher Education Commission (Pakistan), Mikryukov, Vladimir [0000-0003-2786-2690], Dulya, Olesya [0000-0002-7185-8659], Zizka, Alexander [0000-0002-1680-9192], Bahram, Mohammad [0000-0002-9539-3307], Hagh-Doust, Niloufar [0000-0003-0616-5829], Anslan, Sten [0000-0002-2299-454X], Prylutskyi, Oleh [0000-0001-5730-517X], Delgado-Baquerizo, Manuel [0000-0002-6499-576X], Maestre, Fernando T. [0000-0002-7434-4856], Nilsson, Henrik [0000-0002-8052-0107], Pärn, Jaan [0000-0001-6507-8894], Öpik, Maarja [0000-0001-8025-7460], Moora, Mari [0000-0002-4819-7506], Zobel, Martin [0000-0001-7957-6704], Espenberg, Mikk [0000-0003-0469-6394], Mander, Ülo [0000-0003-2340-6989], Khalid, Abdul Nasir [0000-0002-5635-8031], Corrales, Adriana [0000-0001-9885-4634], Agan, Ahto [0000-0001-9010-8944], Vasco-Palacios, Aída-M. [0000-0003-0539-9711], Rinaldi, Andrea [0000-0002-9352-1037], Verbeken, A. [0000-0002-6266-3091], Sulistyo, Bobby [0000-0002-5203-4822], Furneaux, Brendan [0000-0003-3522-7363], Duarte Ritter, Camila [0000-0002-3371-7425], Nyamukondiwa, Casper [0000-0002-0395-4980], Sharp, Cathy [0009-0003-4985-1543], Marín, César [0000-0002-2529-8929], Gohar, Daniyal [0000-0003-0312-1142], Klavina, Darta [0000-0002-1455-9062], Dai, Dong Qin [0000-0001-8935-8807], Nouhra, Eduardo [0000-0002-7080-8211], Machteld Biersma, Elisabeth [0000-0002-9877-2177], Rähn, Elisabeth [0009-0005-5521-4772], Cameron, Erin [0000-0002-3374-9830], Crop, Eske de [0000-0002-9067-6981], Otsing. Eveli [0000-0001-7416-257X], Albornoz, Felipe [0000-0001-9526-0945], Brearley, Francis [0000-0001-5053-5693], Buegger, Franz [0000-0003-3526-4711], Zahn, Geoffrey [0000-0002-8691-692X], Bonito, Gregory [0000-0002-7262-8978], Hiiesalu, Inga [0000-0002-5457-2376], Barrio, Isabel [0000-0002-8120-5248], Heilmann-Clausen, Jacob [0000-0003-4713-6004], Doležal, Jiří [0000-0002-5829-4051], Kupagme, John [0000-0002-9981-050X], Maciá-Vicente, José [0000-0002-7174-7270], Geml, József [0000-0001-8745-0423], Alatalo, Juha [0000-0001-5084-850X], Álvarez-Manjarrez, Julieta [0000-0002-5581-7443], Põldmaa, Kadri [0000-0002-7936-2455], Runnel, Kadrid [0000-0002-7308-3623], Bråthen, Kari Anne [0000-0003-0942-1074], Pritsch, Karin [0000-0001-6384-2473], Newsham, Kevin K. [0000-0002-9108-0936], Panksep, Kristel [0000-0003-4743-6111], Lateef, Adebola A. [0000-0002-0510-7996], Lamit, Louis J. [0000-0002-0385-6010], Saba, M. [0000-0001-7673-2345], Tuomi, Maria [0000-0002-7154-5177], Gryzenhout, M. [0000-0002-9224-4277], Bauters, Marijn [0000-0003-0978-6639], Wijayawardene, Nalin N. [0000-0003-0522-5498], Yorou, Nourou [0000-0001-6997-811X], Kurina, Olavi [0000-0002-4858-4629], Mortimer, Peter [0000-0003-3188-9327], Kohout, Petr [0000-0002-3985-2310], Puusepp, Rasmus [0000-0002-0617-3776], Garibay-Orijel, Roberto [0000-0002-6977-7550], Godoy, Roberto [0000-0002-3719-3091], Alkahtani, Saad [0000-0001-7381-5110], Rahimlou, Saleh [0000-0003-0427-1329], Dudov, Sergey [0000-0003-1512-0956], Ghosh, Soumya [0000-0002-4945-3516], Mundra, Sunil [0000-0002-0535-118X], Ahmed, Talaat [0000-0001-8022-1855], Netherway, Tarquin [0000-0002-9049-9225], Henkel, Terry [0000-0001-9760-8837], Roslin, Tomas [0000-0002-2957-4791], Nteziryayo, Vincent [0000-0002-0176-5780], Fedosov, V. [0000-0002-5331-6346], Lim, Young Woon [0000-0003-2864-3449], Van Nuland, Michael [0000-0002-3333-0212], Soudzilovskaia, Nadejda A. [0000-0002-9584-2109], Antonelli, Alexandre [0000-0003-1842-9297], Kõljalg, Urmas [0000-0002-5171-1668], Abarenkov, K. [0000-0001-5526-4845, Tedersoo, Leho [0000-0002-1635-1249], Mikryukov, Vladimir, Dulya, Olesya, Zizka, Alexander, Bahram, Mohammad, Hagh-Doust, Niloufar, Anslan, Sten, Prylutskyi, Oleh, Delgado-Baquerizo, Manuel, Maestre, Fernando T., Nilsson, Henrik, Pärn, Jaan, Ahmed, Talaat, Netherway, Tarquin, Henkel, Terry, Roslin, Tomas, Nteziryayo, Vincent, Fedosov, V., Onipchenko, Vladimir, Yasanthika, W. A. Erand, Lim, Young Woon, Van Nuland, Michael, Soudzilovskaia, Nadejda A., Antonelli, Alexandre, Kõljalg, Urmas, Abarenkov, K., Tedersoo, Leho, Öpik, Maarja, Moora, Mari, Zobel, Martin, Espenberg, Mikk, Mander, Ülo, Khalid, Abdul Nasir, Corrales, Adriana, Agan, Ahto, Vasco-Palacios, Aída-M., Saitta, A., Rinaldi, Andrea, Verbeken, A., Sulistyo, Bobby, Tamgnoue, Boris, Furneaux, Brendan, Duarte Ritter, Camila, Nyamukondiwa, Casper, Sharp, Cathy, Marín, César, Gohar, Daniyal, Klavina, Darta, Sharmah, Dipon, Dai, Dong Qin, Nouhra, Eduardo, Machteld Biersma, Elisabeth, Rähn, Elisabeth, Cameron, Erin, Crop, Eske de, Otsing. 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Abstract

How the multiple facets of soil fungal diversity vary worldwide remains virtually unknown, hindering the management of this essential species-rich group. By sequencing high-resolution DNA markers in over 4000 topsoil samples from natural and human-altered ecosystems across all continents, we illustrate the distributions and drivers of different levels of taxonomic and phylogenetic diversity of fungi and their ecological groups. We show the impact of precipitation and temperature interactions on local fungal species richness (alpha diversity) across different climates. Our findings reveal how temperature drives fungal compositional turnover (beta diversity) and phylogenetic diversity, linking them with regional species richness (gamma diversity). We integrate fungi into the principles of global biodiversity distribution and present detailed maps for biodiversity conservation and modeling of global ecological processes.

Published
2023

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