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Unsupervised Domain Adaptation (DA) consists of adapting a model trained on a labeled source domain to perform well on an unlabeled target domain with some data distribution shift. While many methods have been proposed in the literature, fair and realistic evaluation remains an open question, particularly due to methodological difficulties in selecting hyperparameters in the unsupervised setting. With SKADA-Bench, we propose a framework to evaluate DA methods and present a fair evaluation of existing shallow algorithms, including reweighting, mapping, and subspace alignment. Realistic hyperparameter selection is performed with nested cross-validation and various unsupervised model selection scores, on both simulated datasets with controlled shifts and real-world datasets across diverse modalities, such as images, text, biomedical, and tabular data with specific feature extraction. Our benchmark highlights the importance of realistic validation and provides practical guidance for real-life applications, with key insights into the choice and impact of model selection approaches. SKADA-Bench is open-source, reproducible, and can be easily extended with novel DA methods, datasets, and model selection criteria without requiring re-evaluating competitors. SKADA-Bench is available on GitHub at https://github.com/scikit-adaptation/skada-bench.

Physiological signal analysis often involves identifying events crucial to understanding biological dynamics. Traditional methods rely on handcrafted procedures or supervised learning, presenting challenges such as expert dependence, lack of robustness, and the need for extensive labeled data. Data-driven methods like Convolutional Dictionary Learning (CDL) offer an alternative but tend to produce spurious detections. This work introduces UNHaP (Unmix Noise from Hawkes Processes), a novel approach addressing the joint learning of temporal structures in events and the removal of spurious detections. Leveraging marked Hawkes processes, UNHaP distinguishes between events of interest and spurious ones. By treating the event detection output as a mixture of structured and unstructured events, UNHaP efficiently unmixes these processes and estimates their parameters. This approach significantly enhances the understanding of event distributions while minimizing false detection rates.

Many modern spatio-temporal data sets, in sociology, epidemiology or seismology, for example, exhibit self-exciting characteristics, triggering and clustering behaviors both at the same time, that a suitable Hawkes space-time process can accurately capture. This paper aims to develop a fast and flexible parametric inference technique to recover the parameters of the kernel functions involved in the intensity function of a space-time Hawkes process based on such data. Our statistical approach combines three key ingredients: 1) kernels with finite support are considered, 2) the space-time domain is appropriately discretized, and 3) (approximate) precomputations are used. The inference technique we propose then consists of a $\ell_2$ gradient-based solver that is fast and statistically accurate. In addition to describing the algorithmic aspects, numerical experiments have been carried out on synthetic and real spatio-temporal data, providing solid empirical evidence of the relevance of the proposed methodology.

Objective. This study conduct an extensive Brain-computer interfaces (BCI) reproducibility analysis on open electroencephalography datasets, aiming to assess existing solutions and establish open and reproducible benchmarks for effective comparison within the field. The need for such benchmark lies in the rapid industrial progress that has given rise to undisclosed proprietary solutions. Furthermore, the scientific literature is dense, often featuring challenging-to-reproduce evaluations, making comparisons between existing approaches arduous. Approach. Within an open framework, 30 machine learning pipelines (separated into raw signal: 11, Riemannian: 13, deep learning: 6) are meticulously re-implemented and evaluated across 36 publicly available datasets, including motor imagery (14), P300 (15), and SSVEP (7). The analysis incorporates statistical meta-analysis techniques for results assessment, encompassing execution time and environmental impact considerations. Main results. The study yields principled and robust results applicable to various BCI paradigms, emphasizing motor imagery, P300, and SSVEP. Notably, Riemannian approaches utilizing spatial covariance matrices exhibit superior performance, underscoring the necessity for significant data volumes to achieve competitive outcomes with deep learning techniques. The comprehensive results are openly accessible, paving the way for future research to further enhance reproducibility in the BCI domain. Significance. The significance of this study lies in its contribution to establishing a rigorous and transparent benchmark for BCI research, offering insights into optimal methodologies and highlighting the importance of reproducibility in driving advancements within the field., Comment: 43 pages, 13 figures, 5 tables

The interaction of a gravitational wave (GW) with an elastic body is usually described in terms of a GW "force" driving the oscillations of the body's normal modes. However, this description is only possible for GW frequencies for which the response of the elastic body is dominated by a few normal modes. At higher frequencies the normal modes blend into a quasi-continuum and a field-theoretical description, as pioneered by Dyson already in 1969, becomes necessary. However, since the metric perturbation $h_{\mu\nu}$ is an intrinsically relativistic object, a consistent coupling to GWs can only be obtained within a relativistic (and, in fact generally covariant) theory of elasticity. We develop such a formalism using the methods of modern effective field theories, and we use it to provide a derivation of the interaction of elastic bodies with GWs valid also in the high-frequency regime, providing a first-principle derivation of Dyson's result (and partially correcting it). We also stress that the field-theoretical results are obtained working in the TT frame, while the description in terms of a force driving the normal modes is only valid in the proper detector frame. We show how to transform the results between the two frames. Beside an intrinsic conceptual interest, these results are relevant to the computation of the sensitivity of the recently proposed Lunar Gravitational Wave Antenna., Comment: 63 pages

Motivated by the challenge of seamless cross-dataset transfer in EEG signal processing, this article presents an exploratory study on the use of Joint Embedding Predictive Architectures (JEPAs). In recent years, self-supervised learning has emerged as a promising approach for transfer learning in various domains. However, its application to EEG signals remains largely unexplored. In this article, we introduce Signal-JEPA for representing EEG recordings which includes a novel domain-specific spatial block masking strategy and three novel architectures for downstream classification. The study is conducted on a 54 subjects dataset and the downstream performance of the models is evaluated on three different BCI paradigms: motor imagery, ERP and SSVEP. Our study provides preliminary evidence for the potential of JEPAs in EEG signal encoding. Notably, our results highlight the importance of spatial filtering for accurate downstream classification and reveal an influence of the length of the pre-training examples but not of the mask size on the downstream performance.

Plug-and-play algorithms constitute a popular framework for solving inverse imaging problems that rely on the implicit definition of an image prior via a denoiser. These algorithms can leverage powerful pre-trained denoisers to solve a wide range of imaging tasks, circumventing the necessity to train models on a per-task basis. Unfortunately, plug-and-play methods often show unstable behaviors, hampering their promise of versatility and leading to suboptimal quality of reconstructed images. In this work, we show that enforcing equivariance to certain groups of transformations (rotations, reflections, and/or translations) on the denoiser strongly improves the stability of the algorithm as well as its reconstruction quality. We provide a theoretical analysis that illustrates the role of equivariance on better performance and stability. We present a simple algorithm that enforces equivariance on any existing denoiser by simply applying a random transformation to the input of the denoiser and the inverse transformation to the output at each iteration of the algorithm. Experiments on multiple imaging modalities and denoising networks show that the equivariant plug-and-play algorithm improves both the reconstruction performance and the stability compared to their non-equivariant counterparts.

Given observed data and a probabilistic generative model, Bayesian inference searches for the distribution of the model's parameters that could have yielded the data. Inference is challenging for large population studies where millions of measurements are performed over a cohort of hundreds of subjects, resulting in a massive parameter space. This large cardinality renders off-the-shelf Variational Inference (VI) computationally impractical. In this work, we design structured VI families that efficiently tackle large population studies. Our main idea is to share the parameterization and learning across the different i.i.d. variables in a generative model, symbolized by the model's \textit{plates}. We name this concept \textit{plate amortization}. Contrary to off-the-shelf stochastic VI, which slows down inference, plate amortization results in orders of magnitude faster to train variational distributions. Applied to large-scale hierarchical problems, PAVI yields expressive, parsimoniously parameterized VI with an affordable training time. This faster convergence effectively unlocks inference in those large regimes. We illustrate the practical utility of PAVI through a challenging Neuroimaging example featuring 400 million latent parameters, demonstrating a significant step towards scalable and expressive Variational Inference.

Implicit deep learning has recently gained popularity with applications ranging from meta-learning to Deep Equilibrium Networks (DEQs). In its general formulation, it relies on expressing some components of deep learning pipelines implicitly, typically via a root equation called the inner problem. In practice, the solution of the inner problem is approximated during training with an iterative procedure, usually with a fixed number of inner iterations. During inference, the inner problem needs to be solved with new data. A popular belief is that increasing the number of inner iterations compared to the one used during training yields better performance. In this paper, we question such an assumption and provide a detailed theoretical analysis in a simple setting. We demonstrate that overparametrization plays a key role: increasing the number of iterations at test time cannot improve performance for overparametrized networks. We validate our theory on an array of implicit deep-learning problems. DEQs, which are typically overparametrized, do not benefit from increasing the number of iterations at inference while meta-learning, which is typically not overparametrized, benefits from it.

When dealing with electro or magnetoencephalography records, many supervised prediction tasks are solved by working with covariance matrices to summarize the signals. Learning with these matrices requires using Riemanian geometry to account for their structure. In this paper, we propose a new method to deal with distributions of covariance matrices and demonstrate its computational efficiency on M/EEG multivariate time series. More specifically, we define a Sliced-Wasserstein distance between measures of symmetric positive definite matrices that comes with strong theoretical guarantees. Then, we take advantage of its properties and kernel methods to apply this distance to brain-age prediction from MEG data and compare it to state-of-the-art algorithms based on Riemannian geometry. Finally, we show that it is an efficient surrogate to the Wasserstein distance in domain adaptation for Brain Computer Interface applications., Comment: Published as a conference paper at ICML2023

Bilevel optimization problems, which are problems where two optimization problems are nested, have more and more applications in machine learning. In many practical cases, the upper and the lower objectives correspond to empirical risk minimization problems and therefore have a sum structure. In this context, we propose a bilevel extension of the celebrated SARAH algorithm. We demonstrate that the algorithm requires $\mathcal{O}((n+m)^{\frac12}\varepsilon^{-1})$ oracle calls to achieve $\varepsilon$-stationarity with $n+m$ the total number of samples, which improves over all previous bilevel algorithms. Moreover, we provide a lower bound on the number of oracle calls required to get an approximate stationary point of the objective function of the bilevel problem. This lower bound is attained by our algorithm, making it optimal in terms of sample complexity., Comment: Accepted at AISTATS 2024

Temporal point processes (TPP) are a natural tool for modeling event-based data. Among all TPP models, Hawkes processes have proven to be the most widely used, mainly due to their adequate modeling for various applications, particularly when considering exponential or non-parametric kernels. Although non-parametric kernels are an option, such models require large datasets. While exponential kernels are more data efficient and relevant for specific applications where events immediately trigger more events, they are ill-suited for applications where latencies need to be estimated, such as in neuroscience. This work aims to offer an efficient solution to TPP inference using general parametric kernels with finite support. The developed solution consists of a fast $\ell_2$ gradient-based solver leveraging a discretized version of the events. After theoretically supporting the use of discretization, the statistical and computational efficiency of the novel approach is demonstrated through various numerical experiments. Finally, the method's effectiveness is evaluated by modeling the occurrence of stimuli-induced patterns from brain signals recorded with magnetoencephalography (MEG). Given the use of general parametric kernels, results show that the proposed approach leads to an improved estimation of pattern latency than the state-of-the-art.

Objective: The use of deep learning for electroencephalography (EEG) classification tasks has been rapidly growing in the last years, yet its application has been limited by the relatively small size of EEG datasets. Data augmentation, which consists in artificially increasing the size of the dataset during training, can be employed to alleviate this problem. While a few augmentation transformations for EEG data have been proposed in the literature, their positive impact on performance is often evaluated on a single dataset and compared to one or two competing augmentation methods. This work proposes to better validate the existing data augmentation approaches through a unified and exhaustive analysis. Approach: We compare quantitatively 13 different augmentations with two different predictive tasks, datasets and models, using three different types of experiments. Main results: We demonstrate that employing the adequate data augmentations can bring up to 45% accuracy improvements in low data regimes compared to the same model trained without any augmentation. Our experiments also show that there is no single best augmentation strategy, as the good augmentations differ on each task. Significance: Our results highlight the best data augmentations to consider for sleep stage classification and motor imagery brain-computer interfaces. More broadly, it demonstrates that EEG classification tasks benefit from adequate data augmentation, Comment: Accepted in Journal of Neural Engineering

Numerical validation is at the core of machine learning research as it allows to assess the actual impact of new methods, and to confirm the agreement between theory and practice. Yet, the rapid development of the field poses several challenges: researchers are confronted with a profusion of methods to compare, limited transparency and consensus on best practices, as well as tedious re-implementation work. As a result, validation is often very partial, which can lead to wrong conclusions that slow down the progress of research. We propose Benchopt, a collaborative framework to automate, reproduce and publish optimization benchmarks in machine learning across programming languages and hardware architectures. Benchopt simplifies benchmarking for the community by providing an off-the-shelf tool for running, sharing and extending experiments. To demonstrate its broad usability, we showcase benchmarks on three standard learning tasks: $\ell_2$-regularized logistic regression, Lasso, and ResNet18 training for image classification. These benchmarks highlight key practical findings that give a more nuanced view of the state-of-the-art for these problems, showing that for practical evaluation, the devil is in the details. We hope that Benchopt will foster collaborative work in the community hence improving the reproducibility of research findings., Comment: Accepted in proceedings of NeurIPS 22; Benchopt library documentation is available at https://benchopt.github.io/

Given some observed data and a probabilistic generative model, Bayesian inference aims at obtaining the distribution of a model's latent parameters that could have yielded the data. This task is challenging for large population studies where thousands of measurements are performed over a cohort of hundreds of subjects, resulting in a massive latent parameter space. This large cardinality renders off-the-shelf Variational Inference (VI) computationally impractical. In this work, we design structured VI families that can efficiently tackle large population studies. To this end, our main idea is to share the parameterization and learning across the different i.i.d. variables in a generative model -symbolized by the model's plates. We name this concept plate amortization, and illustrate the powerful synergies it entitles, resulting in expressive, parsimoniously parameterized and orders of magnitude faster to train large scale hierarchical variational distributions. We illustrate the practical utility of PAVI through a challenging Neuroimaging example featuring a million latent parameters, demonstrating a significant step towards scalable and expressive Variational Inference.

Designing learning systems which are invariant to certain data transformations is critical in machine learning. Practitioners can typically enforce a desired invariance on the trained model through the choice of a network architecture, e.g. using convolutions for translations, or using data augmentation. Yet, enforcing true invariance in the network can be difficult, and data invariances are not always known a piori. State-of-the-art methods for learning data augmentation policies require held-out data and are based on bilevel optimization problems, which are complex to solve and often computationally demanding. In this work we investigate new ways of learning invariances only from the training data. Using learnable augmentation layers built directly in the network, we demonstrate that our method is very versatile. It can incorporate any type of differentiable augmentation and be applied to a broad class of learning problems beyond computer vision. We provide empirical evidence showing that our approach is easier and faster to train than modern automatic data augmentation techniques based on bilevel optimization, while achieving comparable results. Experiments show that while the invariances transferred to a model through automatic data augmentation are limited by the model expressivity, the invariance yielded by our approach is insensitive to it by design., Comment: Accepted to NeurIPS 2022

Bilevel optimization, the problem of minimizing a value function which involves the arg-minimum of another function, appears in many areas of machine learning. In a large scale empirical risk minimization setting where the number of samples is huge, it is crucial to develop stochastic methods, which only use a few samples at a time to progress. However, computing the gradient of the value function involves solving a linear system, which makes it difficult to derive unbiased stochastic estimates. To overcome this problem we introduce a novel framework, in which the solution of the inner problem, the solution of the linear system, and the main variable evolve at the same time. These directions are written as a sum, making it straightforward to derive unbiased estimates. The simplicity of our approach allows us to develop global variance reduction algorithms, where the dynamics of all variables is subject to variance reduction. We demonstrate that SABA, an adaptation of the celebrated SAGA algorithm in our framework, has $O(\frac1T)$ convergence rate, and that it achieves linear convergence under Polyak-Lojasciewicz assumption. This is the first stochastic algorithm for bilevel optimization that verifies either of these properties. Numerical experiments validate the usefulness of our method., Comment: Accepted at NeurIPS 2022

The quantitative analysis of non-invasive electrophysiology signals from electroencephalography (EEG) and magnetoencephalography (MEG) boils down to the identification of temporal patterns such as evoked responses, transient bursts of neural oscillations but also blinks or heartbeats for data cleaning. Several works have shown that these patterns can be extracted efficiently in an unsupervised way, e.g., using Convolutional Dictionary Learning. This leads to an event-based description of the data. Given these events, a natural question is to estimate how their occurrences are modulated by certain cognitive tasks and experimental manipulations. To address it, we propose a point process approach. While point processes have been used in neuroscience in the past, in particular for single cell recordings (spike trains), techniques such as Convolutional Dictionary Learning make them amenable to human studies based on EEG/MEG signals. We develop a novel statistical point process model-called driven temporal point processes (DriPP)-where the intensity function of the point process model is linked to a set of point processes corresponding to stimulation events. We derive a fast and principled expectation-maximization (EM) algorithm to estimate the parameters of this model. Simulations reveal that model parameters can be identified from long enough signals. Results on standard MEG datasets demonstrate that our methodology reveals event-related neural responses-both evoked and induced-and isolates non-task specific temporal patterns.

Data augmentation is a key element of deep learning pipelines, as it informs the network during training about transformations of the input data that keep the label unchanged. Manually finding adequate augmentation methods and parameters for a given pipeline is however rapidly cumbersome. In particular, while intuition can guide this decision for images, the design and choice of augmentation policies remains unclear for more complex types of data, such as neuroscience signals. Besides, class-dependent augmentation strategies have been surprisingly unexplored in the literature, although it is quite intuitive: changing the color of a car image does not change the object class to be predicted, but doing the same to the picture of an orange does. This paper investigates gradient-based automatic data augmentation algorithms amenable to class-wise policies with exponentially larger search spaces. Motivated by supervised learning applications using EEG signals for which good augmentation policies are mostly unknown, we propose a new differentiable relaxation of the problem. In the class-agnostic setting, results show that our new relaxation leads to optimal performance with faster training than competing gradient-based methods, while also outperforming gradient-free methods in the class-wise setting. This work proposes also novel differentiable augmentation operations relevant for sleep stage classification.

Dictionary learning consists of finding a sparse representation from noisy data and is a common way to encode data-driven prior knowledge on signals. Alternating minimization (AM) is standard for the underlying optimization, where gradient descent steps alternate with sparse coding procedures. The major drawback of this method is its prohibitive computational cost, making it unpractical on large real-world data sets. This work studies an approximate formulation of dictionary learning based on unrolling and compares it to alternating minimization to find the best trade-off between speed and precision. We analyze the asymptotic behavior and convergence rate of gradients estimates in both methods. We show that unrolling performs better on the support of the inner problem solution and during the first iterations. Finally, we apply unrolling on pattern learning in magnetoencephalography (MEG) with the help of a stochastic algorithm and compare the performance to a state-of-the-art method.

In recent years, implicit deep learning has emerged as a method to increase the effective depth of deep neural networks. While their training is memory-efficient, they are still significantly slower to train than their explicit counterparts. In Deep Equilibrium Models (DEQs), the training is performed as a bi-level problem, and its computational complexity is partially driven by the iterative inversion of a huge Jacobian matrix. In this paper, we propose a novel strategy to tackle this computational bottleneck from which many bi-level problems suffer. The main idea is to use the quasi-Newton matrices from the forward pass to efficiently approximate the inverse Jacobian matrix in the direction needed for the gradient computation. We provide a theorem that motivates using our method with the original forward algorithms. In addition, by modifying these forward algorithms, we further provide theoretical guarantees that our method asymptotically estimates the true implicit gradient. We empirically study this approach and the recent Jacobian-Free method in different settings, ranging from hyperparameter optimization to large Multiscale DEQs (MDEQs) applied to CIFAR and ImageNet. Both methods reduce significantly the computational cost of the backward pass. While SHINE has a clear advantage on hyperparameter optimization problems, both methods attain similar computational performances for larger scale problems such as MDEQs at the cost of a limited performance drop compared to the original models., Comment: Accepted as a spotlight to ICLR 2022

Inferring the parameters of a stochastic model based on experimental observations is central to the scientific method. A particularly challenging setting is when the model is strongly indeterminate, i.e. when distinct sets of parameters yield identical observations. This arises in many practical situations, such as when inferring the distance and power of a radio source (is the source close and weak or far and strong?) or when estimating the amplifier gain and underlying brain activity of an electrophysiological experiment. In this work, we present hierarchical neural posterior estimation (HNPE), a novel method for cracking such indeterminacy by exploiting additional information conveyed by an auxiliary set of observations sharing global parameters. Our method extends recent developments in simulation-based inference (SBI) based on normalizing flows to Bayesian hierarchical models. We validate quantitatively our proposal on a motivating example amenable to analytical solutions and then apply it to invert a well known non-linear model from computational neuroscience, using both simulated and real EEG data.

The analysis of the Nystagmus waveforms from eye-tracking records is crucial for the clinicial interpretation of this pathological movement. A major issue to automatize this analysis is the presence of natural eye movements and eye blink artefacts that are mixed with the signal of interest. We propose a method based on Convolutional Dictionary Learning that is able to automaticcaly highlight the Nystagmus waveforms, separating the natural motion from the pathological movements. We show on simulated signals that our method can indeed improve the pattern recovery rate and provide clinical examples to illustrate how this algorithm performs.

Total Variation (TV) is a popular regularization strategy that promotes piece-wise constant signals by constraining the $\ell_1$-norm of the first order derivative of the estimated signal. The resulting optimization problem is usually solved using iterative algorithms such as proximal gradient descent, primal-dual algorithms or ADMM. However, such methods can require a very large number of iterations to converge to a suitable solution. In this paper, we accelerate such iterative algorithms by unfolding proximal gradient descent solvers in order to learn their parameters for 1D TV regularized problems. While this could be done using the synthesis formulation, we demonstrate that this leads to slower performances. The main difficulty in applying such methods in the analysis formulation lies in proposing a way to compute the derivatives through the proximal operator. As our main contribution, we develop and characterize two approaches to do so, describe their benefits and limitations, and discuss the regime where they can actually improve over iterative procedures. We validate those findings with experiments on synthetic and real data., Comment: accepted to NeurIPS 2020

The presence of missing values makes supervised learning much more challenging. Indeed, previous work has shown that even when the response is a linear function of the complete data, the optimal predictor is a complex function of the observed entries and the missingness indicator. As a result, the computational or sample complexities of consistent approaches depend on the number of missing patterns, which can be exponential in the number of dimensions. In this work, we derive the analytical form of the optimal predictor under a linearity assumption and various missing data mechanisms including Missing at Random (MAR) and self-masking (Missing Not At Random). Based on a Neumann-series approximation of the optimal predictor, we propose a new principled architecture, named NeuMiss networks. Their originality and strength come from the use of a new type of non-linearity: the multiplication by the missingness indicator. We provide an upper bound on the Bayes risk of NeuMiss networks, and show that they have good predictive accuracy with both a number of parameters and a computational complexity independent of the number of missing data patterns. As a result they scale well to problems with many features, and remain statistically efficient for medium-sized samples. Moreover, we show that, contrary to procedures using EM or imputation, they are robust to the missing data mechanism, including difficult MNAR settings such as self-masking.

In min-min optimization or max-min optimization, one has to compute the gradient of a function defined as a minimum. In most cases, the minimum has no closed-form, and an approximation is obtained via an iterative algorithm. There are two usual ways of estimating the gradient of the function: using either an analytic formula obtained by assuming exactness of the approximation, or automatic differentiation through the algorithm. In this paper, we study the asymptotic error made by these estimators as a function of the optimization error. We find that the error of the automatic estimator is close to the square of the error of the analytic estimator, reflecting a super-efficiency phenomenon. The convergence of the automatic estimator greatly depends on the convergence of the Jacobian of the algorithm. We analyze it for gradient descent and stochastic gradient descent and derive convergence rates for the estimators in these cases. Our analysis is backed by numerical experiments on toy problems and on Wasserstein barycenter computation. Finally, we discuss the computational complexity of these estimators and give practical guidelines to chose between them., Comment: 31 pages

Sparse coding is typically solved by iterative optimization techniques, such as the Iterative Shrinkage-Thresholding Algorithm (ISTA). Unfolding and learning weights of ISTA using neural networks is a practical way to accelerate estimation. In this paper, we study the selection of adapted step sizes for ISTA. We show that a simple step size strategy can improve the convergence rate of ISTA by leveraging the sparsity of the iterates. However, it is impractical in most large-scale applications. Therefore, we propose a network architecture where only the step sizes of ISTA are learned. We demonstrate that for a large class of unfolded algorithms, if the algorithm converges to the solution of the Lasso, its last layers correspond to ISTA with learned step sizes. Experiments show that our method is competitive with state-of-the-art networks when the solutions are sparse enough., Comment: 22 pages

Convolutional dictionary learning (CDL) estimates shift invariant basis adapted to multidimensional data. CDL has proven useful for image denoising or inpainting, as well as for pattern discovery on multivariate signals. As estimated patterns can be positioned anywhere in signals or images, optimization techniques face the difficulty of working in extremely high dimensions with millions of pixels or time samples, contrarily to standard patch-based dictionary learning. To address this optimization problem, this work proposes a distributed and asynchronous algorithm, employing locally greedy coordinate descent and an asynchronous locking mechanism that does not require a central server. This algorithm can be used to distribute the computation on a number of workers which scales linearly with the encoded signal's size. Experiments confirm the scaling properties which allows us to learn patterns on large scales images from the Hubble Space Telescope.

Frequency-specific patterns of neural activity are traditionally interpreted as sustained rhythmic oscillations, and related to cognitive mechanisms such as attention, high level visual processing or motor control. While alpha waves (8-12 Hz) are known to closely resemble short sinusoids, and thus are revealed by Fourier analysis or wavelet transforms, there is an evolving debate that electromagnetic neural signals are composed of more complex waveforms that cannot be analyzed by linear filters and traditional signal representations. In this paper, we propose to learn dedicated representations of such recordings using a multivariate convolutional sparse coding (CSC) algorithm. Applied to electroencephalography (EEG) or magnetoencephalography (MEG) data, this method is able to learn not only prototypical temporal waveforms, but also associated spatial patterns so their origin can be localized in the brain. Our algorithm is based on alternated minimization and a greedy coordinate descent solver that leads to state-of-the-art running time on long time series. To demonstrate the implications of this method, we apply it to MEG data and show that it is able to recover biological artifacts. More remarkably, our approach also reveals the presence of non-sinusoidal mu-shaped patterns, along with their topographic maps related to the somatosensory cortex.

Sparse coding is a core building block in many data analysis and machine learning pipelines. Typically it is solved by relying on generic optimization techniques, such as the Iterative Soft Thresholding Algorithm and its accelerated version (ISTA, FISTA). These methods are optimal in the class of first-order methods for non-smooth, convex functions. However, they do not exploit the particular structure of the problem at hand nor the input data distribution. An acceleration using neural networks, coined LISTA, was proposed in Gregor and Le Cun (2010), which showed empirically that one could achieve high quality estimates with few iterations by modifying the parameters of the proximal splitting appropriately. In this paper we study the reasons for such acceleration. Our mathematical analysis reveals that it is related to a specific matrix factorization of the Gram kernel of the dictionary, which attempts to nearly diagonalise the kernel with a basis that produces a small perturbation of the $\ell_1$ ball. When this factorization succeeds, we prove that the resulting splitting algorithm enjoys an improved convergence bound with respect to the non-adaptive version. Moreover, our analysis also shows that conditions for acceleration occur mostly at the beginning of the iterative process, consistent with numerical experiments. We further validate our analysis by showing that on dictionaries where this factorization does not exist, adaptive acceleration fails., Comment: Ongoing work - This document is not complete and might contains errors. arXiv admin note: text overlap with arXiv:1609.00285

In this paper, we introduce DICOD, a convolutional sparse coding algorithm which builds shift invariant representations for long signals. This algorithm is designed to run in a distributed setting, with local message passing, making it communication efficient. It is based on coordinate descent and uses locally greedy updates which accelerate the resolution compared to greedy coordinate selection. We prove the convergence of this algorithm and highlight its computational speed-up which is super-linear in the number of cores used. We also provide empirical evidence for the acceleration properties of our algorithm compared to state-of-the-art methods.

One of the main challenges of deep learning methods is the choice of an appropriate training strategy. In particular, additional steps, such as unsupervised pre-training, have been shown to greatly improve the performances of deep structures. In this article, we propose an extra training step, called post-training, which only optimizes the last layer of the network. We show that this procedure can be analyzed in the context of kernel theory, with the first layers computing an embedding of the data and the last layer a statistical model to solve the task based on this embedding. This step makes sure that the embedding, or representation, of the data is used in the best possible way for the considered task. This idea is then tested on multiple architectures with various data sets, showing that it consistently provides a boost in performance., Comment: submitted to ICLR 2018

Sparse coding is a core building block in many data analysis and machine learning pipelines. Typically it is solved by relying on generic optimization techniques, that are optimal in the class of first-order methods for non-smooth, convex functions, such as the Iterative Soft Thresholding Algorithm and its accelerated version (ISTA, FISTA). However, these methods don't exploit the particular structure of the problem at hand nor the input data distribution. An acceleration using neural networks was proposed in \cite{Gregor10}, coined LISTA, which showed empirically that one could achieve high quality estimates with few iterations by modifying the parameters of the proximal splitting appropriately. In this paper we study the reasons for such acceleration. Our mathematical analysis reveals that it is related to a specific matrix factorization of the Gram kernel of the dictionary, which attempts to nearly diagonalise the kernel with a basis that produces a small perturbation of the $\ell_1$ ball. When this factorization succeeds, we prove that the resulting splitting algorithm enjoys an improved convergence bound with respect to the non-adaptive version. Moreover, our analysis also shows that conditions for acceleration occur mostly at the beginning of the iterative process, consistent with numerical experiments. We further validate our analysis by showing that on dictionaries where this factorization does not exist, adaptive acceleration fails., Comment: Published as a conference paper at ICLR 2017