173 results on '"Moqtaderi, Zarmik"'
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2. Chromatin regulates alternative polyadenylation via the RNA polymerase II elongation rate
3. High-throughput sequencing reveals a simple model of nucleosome energetics
4. Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo
5. Condition-specific 3′ mRNA isoform half-lives and stability elements in yeast
6. Yeast Homologues of Higher Eukaryotic TFIID Subunits
7. Nucleotide-level linkage of transcriptional elongation and polyadenylation
8. Author response: Nucleotide-level linkage of transcriptional elongation and polyadenylation
9. 3′ Untranslated Regions Are Modular Entities That Determine Polyadenylation Profiles
10. Nucleotide level linkage of transcriptional elongation and polyadenylation
11. Species-specific factors mediate extensive heterogeneity of mRNA 3' ends in yeasts
12. A compensatory link between cleavage/polyadenylation and mRNA turnover regulates steady-state mRNA levels in yeast
13. Genome-Wide Study of mRNA Isoform Half-Lives
14. Nucleosome depletion at yeast terminators is not intrinsic and can occur by a transcriptional mechanism linked to 3’-end formation
15. Close Association of RNA Polymerase II and Many Transcription Factors with Pol III Genes
16. Mapping Accessible Chromatin Regions Using Sono-Seq
17. Genome-wide oscillations in G + C density and sequence conservation
18. An integrated encyclopedia of DNA elements in the human genome
19. SIRT7 links H3K18 deacetylation to maintenance of oncogenic transformation
20. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
21. The transcriptional elongation rate regulates alternative polyadenylation in yeast
22. Author response: The transcriptional elongation rate regulates alternative polyadenylation in yeast
23. The TAFs in the HAT
24. TBP-associated factors are not generally required for transcriptional activation in yeast
25. Protein Binding to mRNA 3′ Isoforms
26. Probing In Vivo Structure of Individual mRNA 3′ Isoforms Using Dimethyl Sulfate
27. Extensive Structural Differences of Closely Related 3′ mRNA Isoforms: Links to Pab1 Binding and mRNA Stability
28. Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
29. Mapping 3′ mRNA Isoforms on a Genomic Scale
30. Global Analysis of mRNA Isoform Half-Lives Reveals Stabilizing and Destabilizing Elements in Yeast
31. Construction of Mutant Alleles inSaccharomyces cerevisiaewithout Cloning: Overview and theDelitto PerfettoMethod
32. Iwr1 protein is important for preinitiation complex formation by all three nuclear RNA polymerases in Saccharomyces cerevisiae
33. Multiplex Illumina Sequencing Using DNA Barcoding
34. Iwr1 Protein Is Important for Preinitiation Complex Formation by All Three Nuclear RNA Polymerases in Saccharomyces cerevisiae
35. High-throughput sequencing reveals a simple model of nucleosome energetics
36. Evidence against a genomic code for nucleosome positioning Reply to “Nucleosome sequence preferences influence in vivo nucleosome organization”
37. Genomic binding profiles of functionally distinct RNA polymerase III transcription complexes in human cells
38. Expanding the repertoire of plasmids for PCR-mediated epitope tagging in yeast
39. Intrinsic Histone-DNA Interactions and Low Nucleosome Density Are Important for Preferential Accessibility of Promoter Regions in Yeast
40. Chromatin Immunoprecipitation for Determining the Association of Proteins with Specific Genomic Sequences In Vivo
41. Defining In Vivo Targets of Nuclear Proteins by Chromatin Immunoprecipitation and Microarray Analysis
42. Genome-Wide Occupancy Profile of the RNA Polymerase III Machinery in Saccharomyces cerevisiae Reveals Loci with Incomplete Transcription Complexes
43. Eaf3 Regulates the Global Pattern of Histone Acetylation in Saccharomyces cerevisiae
44. Mot1 Associates with Transcriptionally Active Promoters and Inhibits Association of NC2 in Saccharomyces cerevisiae
45. Activator-Specific Recruitment of TFIID and Regulation of Ribosomal Protein Genes in Yeast
46. TFIIA Has Activator-dependent and Core Promoter Functions in Vivo
47. The Histone H3–like TAF Is Broadly Required for Transcription in Yeast
48. Manipulation of Cloned YeastDNA
49. Reply to “Evidence against a genomic code for nucleosome positioning”.
50. Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo.
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