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1. A genetic history of continuity and mobility in the Iron Age central Mediterranean

Author

Moots, Hannah M., Antonio, Margaret, Sawyer, Susanna, Spence, Jeffrey P., Oberreiter, Victoria, Weiß, Clemens L., Lucci, Michaela, Cherifi, Yahia Mehdi Seddik, La Pastina, Francesco, Genchi, Francesco, Praxmeier, Elisa, Zagorc, Brina, Cheronet, Olivia, Özdoğan, Kadir T., Demetz, Lea, Amrani, Selma, Candilio, Francesca, De Angelis, Daniela, Gasperetti, Gabriella, Fernandes, Daniel, Gao, Ziyue, Fantar, Mounir, Coppa, Alfredo, Pritchard, Jonathan K., and Pinhasi, Ron

Published
2023
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2. Distinct positions of genetic and oral histories: Perspectives from India

Author

Biddanda, Arjun, Bandyopadhyay, Esha, de la Fuente Castro, Constanza, Witonsky, David, Urban Aragon, Jose A., Pasupuleti, Nagarjuna, Moots, Hannah M., Fonseca, Renée, Freilich, Suzanne, Stanisavic, Jovan, Willis, Tabitha, Menon, Anoushka, Mustak, Mohammed S., Kodira, Chinnappa Dilip, Naren, Anjaparavanda P., Sikdar, Mithun, Rai, Niraj, and Raghavan, Maanasa

Published
2024
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3. Ancient Rome : A genetic crossroads of Europe and the Mediterranean

Author

Antonio, Margaret L., Gao, Ziyue, Moots, Hannah M., Lucci, Michaela, Candilio, Francesca, Sawyer, Susanna, Oberreiter, Victoria, Calderon, Diego, Devitofranceschi, Katharina, Aikens, Rachael C., Aneli, Serena, Bartoli, Fulvio, Bedini, Alessandro, Cheronet, Olivia, Cotter, Daniel J., Fernandes, Daniel M., Gasperetti, Gabriella, Grifoni, Renata, Guidi, Alessandro, La Pastina, Francesco, Loreti, Ersilia, Manacorda, Daniele, Matullo, Giuseppe, Morretta, Simona, Nava, Alessia, Nicolai, Vincenzo Fiocchi, Nomi, Federico, Pavolini, Carlo, Pentiricci, Massimo, Pergola, Philippe, Piranomonte, Marina, Schmidt, Ryan, Spinola, Giandomenico, Sperduti, Alessandra, Rubini, Mauro, Bondioli, Luca, Coppa, Alfredo, Pinhasi, Ron, and Pritchard, Jonathan K.

Published
2019

4. Stable population structure in Europe since the Iron Age, despite high mobility

Author

Antonio, Margaret L, Weiß, Clemens L, Gao, Ziyue, Sawyer, Susanna, Oberreiter, Victoria, Moots, Hannah M, Spence, Jeffrey P, Cheronet, Olivia, Zagorc, Brina, Praxmarer, Elisa, Özdoğan, Kadir Toykan, Demetz, Lea, Gelabert, Pere, Fernandes, Daniel, Lucci, Michaela, Alihodžić, Timka, Amrani, Selma, Avetisyan, Pavel, Baillif-Ducros, Christèle, Bedić, Željka, Bertrand, Audrey, Bilić, Maja, Bondioli, Luca, Borówka, Paulina, Botte, Emmanuel, Burmaz, Josip, Bužanić, Domagoj, Candilio, Francesca, Cvetko, Mirna, De Angelis, Daniela, Drnić, Ivan, Elschek, Kristián, Fantar, Mounir, Gaspari, Andrej, Gasperetti, Gabriella, Genchi, Francesco, Golubović, Snežana, Hukeľová, Zuzana, Jankauskas, Rimantas, Vučković, Kristina Jelinčić, Jeremić, Gordana, Kaić, Iva, Kazek, Kevin, Khachatryan, Hamazasp, Khudaverdyan, Anahit, Kirchengast, Sylvia, Korać, Miomir, Kozlowski, Valérie, Krošláková, Mária, Kušan Špalj, Dora, La Pastina, Francesco, Laguardia, Marie, Legrand, Sandra, Leleković, Tino, Leskovar, Tamara, Lorkiewicz, Wiesław, Los, Dženi, Silva, Ana Maria, Masaryk, Rene, Matijević, Vinka, Cherifi, Yahia Mehdi Seddik, Meyer, Nicolas, Mikić, Ilija, Miladinović-Radmilović, Nataša, Milošević Zakić, Branka, Nacouzi, Lina, Natuniewicz-Sekuła, Magdalena, Nava, Alessia, Neugebauer-Maresch, Christine, Nováček, Jan, Osterholtz, Anna, Paige, Julianne, Paraman, Lujana, Pieri, Dominique, Pieta, Karol, Pop-Lazić, Stefan, Ruttkay, Matej, Sanader, Mirjana, Sołtysiak, Arkadiusz, Sperduti, Alessandra, Stankovic Pesterac, Tijana, Teschler-Nicola, Maria, Teul, Iwona, Tončinić, Domagoj, Trapp, Julien, Vulović, Dragana, Waliszewski, Tomasz, Walter, Diethard, Živanović, Miloš, Filah, Mohamed el Mostefa, Čaušević-Bully, Morana, Šlaus, Mario, Borić, Dušan, Novak, Mario, Coppa, Alfredo, Pinhasi, Ron, Pritchard, Jonathan K, Antonio, Margaret L, Weiß, Clemens L, Gao, Ziyue, Sawyer, Susanna, Oberreiter, Victoria, Moots, Hannah M, Spence, Jeffrey P, Cheronet, Olivia, Zagorc, Brina, Praxmarer, Elisa, Özdoğan, Kadir Toykan, Demetz, Lea, Gelabert, Pere, Fernandes, Daniel, Lucci, Michaela, Alihodžić, Timka, Amrani, Selma, Avetisyan, Pavel, Baillif-Ducros, Christèle, Bedić, Željka, Bertrand, Audrey, Bilić, Maja, Bondioli, Luca, Borówka, Paulina, Botte, Emmanuel, Burmaz, Josip, Bužanić, Domagoj, Candilio, Francesca, Cvetko, Mirna, De Angelis, Daniela, Drnić, Ivan, Elschek, Kristián, Fantar, Mounir, Gaspari, Andrej, Gasperetti, Gabriella, Genchi, Francesco, Golubović, Snežana, Hukeľová, Zuzana, Jankauskas, Rimantas, Vučković, Kristina Jelinčić, Jeremić, Gordana, Kaić, Iva, Kazek, Kevin, Khachatryan, Hamazasp, Khudaverdyan, Anahit, Kirchengast, Sylvia, Korać, Miomir, Kozlowski, Valérie, Krošláková, Mária, Kušan Špalj, Dora, La Pastina, Francesco, Laguardia, Marie, Legrand, Sandra, Leleković, Tino, Leskovar, Tamara, Lorkiewicz, Wiesław, Los, Dženi, Silva, Ana Maria, Masaryk, Rene, Matijević, Vinka, Cherifi, Yahia Mehdi Seddik, Meyer, Nicolas, Mikić, Ilija, Miladinović-Radmilović, Nataša, Milošević Zakić, Branka, Nacouzi, Lina, Natuniewicz-Sekuła, Magdalena, Nava, Alessia, Neugebauer-Maresch, Christine, Nováček, Jan, Osterholtz, Anna, Paige, Julianne, Paraman, Lujana, Pieri, Dominique, Pieta, Karol, Pop-Lazić, Stefan, Ruttkay, Matej, Sanader, Mirjana, Sołtysiak, Arkadiusz, Sperduti, Alessandra, Stankovic Pesterac, Tijana, Teschler-Nicola, Maria, Teul, Iwona, Tončinić, Domagoj, Trapp, Julien, Vulović, Dragana, Waliszewski, Tomasz, Walter, Diethard, Živanović, Miloš, Filah, Mohamed el Mostefa, Čaušević-Bully, Morana, Šlaus, Mario, Borić, Dušan, Novak, Mario, Coppa, Alfredo, Pinhasi, Ron, and Pritchard, Jonathan K

Abstract

Ancient DNA research in the past decade has revealed that European population structure changed dramatically in the prehistoric period (14,000–3000 years before present, YBP), reflecting the widespread introduction of Neolithic farmer and Bronze Age Steppe ancestries. However, little is known about how population structure changed from the historical period onward (3000 YBP - present). To address this, we collected whole genomes from 204 individuals from Europe and the Mediterranean, many of which are the first historical period genomes from their region (e.g. Armenia and France). We found that most regions show remarkable inter-individual heterogeneity. At least 7% of historical individuals carry ancestry uncommon in the region where they were sampled, some indicating cross-Mediterranean contacts. Despite this high level of mobility, overall population structure across western Eurasia is relatively stable through the historical period up to the present, mirroring geography. We show that, under standard population genetics models with local panmixia, the observed level of dispersal would lead to a collapse of population structure. Persistent population structure thus suggests a lower effective migration rate than indicated by the observed dispersal. We hypothesize that this phenomenon can be explained by extensive transient dispersal arising from drastically improved transportation networks and the Roman Empire’s mobilization of people for trade, labor, and military. This work highlights the utility of ancient DNA in elucidating finer scale human population dynamics in recent history.

Published
2024

5. Author response: Stable population structure in Europe since the Iron Age, despite high mobility

Author

Antonio, Margaret L, primary, Weiß, Clemens L, primary, Gao, Ziyue, primary, Sawyer, Susanna, primary, Oberreiter, Victoria, additional, Moots, Hannah M, additional, Spence, Jeffrey P, additional, Cheronet, Olivia, additional, Zagorc, Brina, additional, Praxmarer, Elisa, additional, Özdoğan, Kadir Toykan, additional, Demetz, Lea, additional, Gelabert, Pere, additional, Fernandes, Daniel, additional, Lucci, Michaela, additional, Alihodžić, Timka, additional, Amrani, Selma, additional, Avetisyan, Pavel, additional, Baillif-Ducros, Christèle, additional, Bedić, Željka, additional, Bertrand, Audrey, additional, Bilić, Maja, additional, Bondioli, Luca, additional, Borówka, Paulina, additional, Botte, Emmanuel, additional, Burmaz, Josip, additional, Bužanić, Domagoj, additional, Candilio, Francesca, additional, Cvetko, Mirna, additional, De Angelis, Daniela, additional, Drnić, Ivan, additional, Elschek, Kristián, additional, Fantar, Mounir, additional, Gaspari, Andrej, additional, Gasperetti, Gabriella, additional, Genchi, Francesco, additional, Golubović, Snežana, additional, Hukeľová, Zuzana, additional, Jankauskas, Rimantas, additional, Vučković, Kristina Jelinčić, additional, Jeremić, Gordana, additional, Kaić, Iva, additional, Kazek, Kevin, additional, Khachatryan, Hamazasp, additional, Khudaverdyan, Anahit, additional, Kirchengast, Sylvia, additional, Korać, Miomir, additional, Kozlowski, Valérie, additional, Krošláková, Mária, additional, Kušan Špalj, Dora, additional, La Pastina, Francesco, additional, Laguardia, Marie, additional, Legrand, Sandra, additional, Leleković, Tino, additional, Leskovar, Tamara, additional, Lorkiewicz, Wiesław, additional, Los, Dženi, additional, Silva, Ana Maria, additional, Masaryk, Rene, additional, Matijević, Vinka, additional, Cherifi, Yahia Mehdi Seddik, additional, Meyer, Nicolas, additional, Mikić, Ilija, additional, Miladinović-Radmilović, Nataša, additional, Milošević Zakić, Branka, additional, Nacouzi, Lina, additional, Natuniewicz-Sekuła, Magdalena, additional, Nava, Alessia, additional, Neugebauer-Maresch, Christine, additional, Nováček, Jan, additional, Osterholtz, Anna, additional, Paige, Julianne, additional, Paraman, Lujana, additional, Pieri, Dominique, additional, Pieta, Karol, additional, Pop-Lazić, Stefan, additional, Ruttkay, Matej, additional, Sanader, Mirjana, additional, Sołtysiak, Arkadiusz, additional, Sperduti, Alessandra, additional, Stankovic Pesterac, Tijana, additional, Teschler-Nicola, Maria, additional, Teul, Iwona, additional, Tončinić, Domagoj, additional, Trapp, Julien, additional, Vulović, Dragana, additional, Waliszewski, Tomasz, additional, Walter, Diethard, additional, Živanović, Miloš, additional, Filah, Mohamed el Mostefa, additional, Čaušević-Bully, Morana, additional, Šlaus, Mario, additional, Borić, Dušan, additional, Novak, Mario, additional, Coppa, Alfredo, additional, Pinhasi, Ron, additional, and Pritchard, Jonathan K, additional

Published
2023
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6. Stable population structure in Europe since the Iron Age, despite high mobility.

Author

Antonio, Margaret L., Weiß, Clemens L., Ziyue Gao, Sawyer, Susanna, Oberreiter, Victoria, Moots, Hannah M., Spence, Jeffrey P., Cheronet, Olivia, Zagorc, Brina, Praxmarer, Elisa, Özdoğan, Kadir Toykan, Demetz, Lea, Gelabert, Pere, Fernandes, Daniel, Lucci, Michaela, Alihodžić, Timka, Amrani, Selma, Avetisyan, Pavel, Baillif-Ducros, Christèle, and Bedić, Željka

Published
2024
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7. Integrating genetic and oral histories of Southwest Indian populations

Author

Biddanda, Arjun, primary, Bandyopadhyay, Esha, additional, de la Fuente Castro, Constanza, additional, Witonsky, David, additional, Pasupuleti, Nagarjuna, additional, Fonseca, Renée, additional, Freilich, Suzanne, additional, Moots, Hannah M., additional, Stanisavic, Jovan, additional, Willis, Tabitha, additional, Menon, Anoushka, additional, Mustak, Mohammed S., additional, Kodira, Chinnappa Dilip, additional, Naren, Anjaparavanda P., additional, Sikdar, Mithun, additional, Rai, Niraj, additional, and Raghavan, Maanasa, additional

Published
2022
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8. Stable population structure in Europe since the Iron Age, despite high mobility

Author

Antonio, Margaret L., primary, Weiß, Clemens L., additional, Gao, Ziyue, additional, Sawyer, Susanna, additional, Oberreiter, Victoria, additional, Moots, Hannah M., additional, Spence, Jeffrey P., additional, Cheronet, Olivia, additional, Zagorc, Brina, additional, Praxmarer, Elisa, additional, Özdoğan, Kadir Toykan, additional, Demetz, Lea, additional, Lucci, Michaela, additional, Alihodžić, Timka, additional, Amrani, Selma, additional, Avetisyan, Pavel, additional, Baillif-Ducros, Christèle, additional, Bedić, Željka, additional, Bertrand, Audrey, additional, Bilić, Maja, additional, Bondioli, Luca, additional, Borówka, Paulina, additional, Botte, Emmanuel, additional, Burmaz, Josip, additional, Bužanić, Domagoj, additional, Candilio, Francesca, additional, Cvetko, Mirna, additional, De Angelis, Daniela, additional, Drnić, Ivan, additional, Elschek, Kristián, additional, Fantar, Mounir, additional, Gaspari, Andrej, additional, Gasperetti, Gabriella, additional, Genchi, Francesco, additional, Golubović, Snežana, additional, Hukeľová, Zuzana, additional, Jankauskas, Rimantas, additional, Vučković, Kristina Jelinčić, additional, Jeremić, Gordana, additional, Kaić, Iva, additional, Kazek, Kevin, additional, Khachatryan, Hamazasp, additional, Khudaverdyan, Anahit, additional, Kirchengast, Sylvia, additional, Korać, Miomir, additional, Kozlowski, Valérie, additional, Krošláková, Mária, additional, Špalj, Dora Kušan, additional, La Pastina, Francesco, additional, Laguardia, Marie, additional, Legrand, Sandra, additional, Leleković, Tino, additional, Leskovar, Tamara, additional, Lorkiewicz, Wiesław, additional, Los, Dženi, additional, Silva, Ana Maria, additional, Masaryk, Rene, additional, Matijević, Vinka, additional, Cherifi, Yahia Mehdi Seddik, additional, Meyer, Nicholas, additional, Mikić, Ilija, additional, Miladinović-Radmilović, Nataša, additional, Zakić, Branka Milošević, additional, Nacouzi, Lina, additional, Natuniewicz-Sekuła, Magdalena, additional, Nava, Alessia, additional, Neugebauer-Maresch, Christine, additional, Nováček, Jan, additional, Osterholtz, Anna, additional, Paige, Julianne, additional, Paraman, Lujana, additional, Pieri, Dominique, additional, Pieta, Karol, additional, Pop-Lazić, Stefan, additional, Ruttkay, Matej, additional, Sanader, Mirjana, additional, Sołtysiak, Arkadiusz, additional, Sperduti, Alessandra, additional, Pesterac, Tijana Stankovic, additional, Teschler-Nicola, Maria, additional, Teul, Iwona, additional, Tončinić, Domagoj, additional, Trapp, Julien, additional, Vulović, Dragana, additional, Waliszewski, Tomasz, additional, Walter, Diethard, additional, Zivanovic, Milos, additional, Filah, Mohamed el Mostefa, additional, Čaušević-Bully, Morana, additional, Šlaus, Mario, additional, Boric, Dusan, additional, Novak, Mario, additional, Coppa, Alfredo, additional, Pinhasi, Ron, additional, and Pritchard, Jonathan K., additional

Published
2022
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9. A Genetic History of Continuity and Mobility in the Iron Age Central Mediterranean

Author

Moots, Hannah M., primary, Antonio, Margaret, additional, Sawyer, Susanna, additional, Spence, Jeffrey P., additional, Oberreiter, Victoria, additional, Weiß, Clemens L., additional, Lucci, Michaela, additional, Cherifi, Yahia Mehdi Seddik, additional, La Pastina, Francesco, additional, Genchi, Francesco, additional, Praxmeier, Elisa, additional, Zagorc, Brina, additional, Cheronot, Olivia, additional, Özdoğan, Kadir T., additional, Demetz, Lea, additional, Amrani, Selma, additional, Candilio, Francesca, additional, De Angelis, Daniela, additional, Gasperetti, Gabriella, additional, Fernandes, Daniel, additional, Gao, Ziyue, additional, Fantar, Mounir, additional, Coppa, Alfredo, additional, Pritchard, Jonathan K., additional, and Pinhasi, Ron, additional

Published
2022
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11. Predicting skeletal stature using ancientDNA

Author

Cox, Samantha L., primary, Moots, Hannah M., additional, Stock, Jay T., additional, Shbat, Andrej, additional, Bitarello, Bárbara D., additional, Nicklisch, Nicole, additional, Alt, Kurt W., additional, Haak, Wolfgang, additional, Rosenstock, Eva, additional, Ruff, Christopher B., additional, and Mathieson, Iain, additional

Published
2021
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13. Predicting skeletal stature using ancient DNA.

Author

Cox, Samantha L., Moots, Hannah M., Stock, Jay T., Shbat, Andrej, Bitarello, Bárbara D., Nicklisch, Nicole, Alt, Kurt W., Haak, Wolfgang, Rosenstock, Eva, Ruff, Christopher B., and Mathieson, Iain

Subjects
*FOSSIL DNA, *PHENOTYPES, *GENETICS, *GENOTYPES, *ENVIRONMENTAL engineering
Abstract

Objectives: Ancient DNA provides an opportunity to separate the genetic and environmental bases of complex traits by allowing direct estimation of genetic values in ancient individuals. Here, we test whether genetic scores for height in ancient individuals are predictive of their actual height, as inferred from skeletal remains. We estimate the contributions of genetic and environmental variables to observed phenotypic variation as a first step towards quantifying individual sources of morphological variation. Materials and methods: We collected stature estimates and femur lengths from West Eurasian skeletal remains with published genome‐wide ancient DNA data (n = 182, dating from 33,000–850 BP). We also recorded genetic sex, genetic ancestry, date and paleoclimate data for each individual, and δ13C and δ15N stable isotope values where available (n = 69). We tested different methods of calculating polygenic scores, using summary statistics from four different genome wide association studies (GWAS) for height, and three methods for imputing missing genotypes. Results: A polygenic score for height predicts 6.3% of the variance in femur length in our data (n = 132, SD = 0.0069%, p = 0.001), controlling for sex, ancestry, and date. This is consistent with the predictive power of height PRS in present‐day populations and the low coverage of ancient samples. Comparatively, sex explains about 17% of the variance in femur length in our sample. Environmental effects also likely play a role in variation, independent of genetics, though with considerable uncertainty (longitude: R2 = 0.033, SD = 0.008, p = 0.011). Genotype imputation did not improve polygenic prediction, and results varied based on the GWAS summary statistics we used. Discussion: Polygenic scores explain a small but significant proportion of the variance in height in ancient individuals, though not enough to make useful predictions of individual phenotypes. However, environmental variables also contribute to phenotypic outcomes and understanding their interaction with direct genetic predictions will provide a framework with which to model how plasticity and genetic changes ultimately combine to drive adaptation and evolution. [ABSTRACT FROM AUTHOR]

Published
2022
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15. Lakeside Cemeteries in the Sahara: 5000 Years of Holocene Population and Environmental Change

Author

Sereno, Paul C., primary, Garcea, Elena A. A., additional, Jousse, Hélène, additional, Stojanowski, Christopher M., additional, Saliège, Jean-François, additional, Maga, Abdoulaye, additional, Ide, Oumarou A., additional, Knudson, Kelly J., additional, Mercuri, Anna Maria, additional, Stafford, Thomas W., additional, Kaye, Thomas G., additional, Giraudi, Carlo, additional, N'siala, Isabella Massamba, additional, Cocca, Enzo, additional, Moots, Hannah M., additional, Dutheil, Didier B., additional, and Stivers, Jeffrey P., additional

Published
2008
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