1. Insights into the structure-driven protein interactivity of RNA molecules
- Author
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Montes Rg, Marion Alriquet, de Groot Ns, Vabulas Rm, Giulia Calloni, Gian Gaetano Tartaglia, and Alexandros Armaos
- Subjects
0303 health sciences ,Chemistry ,RNA ,Plasma protein binding ,Computational biology ,In vitro ,Protein–protein interaction ,Transcriptome ,03 medical and health sciences ,0302 clinical medicine ,Interaction network ,Proteome ,Nucleic acid structure ,030217 neurology & neurosurgery ,030304 developmental biology - Abstract
The combination of high-throughput sequencing and in vivo crosslinking approaches leads to the progressive uncovering of the complex interdependence between cellular transcriptome and proteome. Yet the molecular determinants that govern interactions in protein-RNA networks are poorly known at present. Here we used the most recent experimental data to investigate the relationship between RNA structure and protein interactions. Our results show that, independently of the particular technique, the amount of structure in RNA molecules correlates with the capacity of binding to proteins in vitro and in vivo. To validate this observation, we generated an in vitro network that mimics the composition of phase-separated RNA granules. We observed that RNA, when structured, competes with protein binding and can rearrange the interaction network. The simplicity of the principle bears great potential to boost the understanding and modelling of cellular processes involving RNA-protein interactions.
- Published
- 2018
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