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1. Author Correction: Predicting the potential for zoonotic transmission and host associations for novel viruses

Author

Pandit, Pranav S., Anthony, Simon J., Goldstein, Tracey, Olival, Kevin J., Doyle, Megan M., Gardner, Nicole R., Bird, Brian, Smith, Woutrina, Wolking, David, Gilardi, Kirsten, Monagin, Corina, Kelly, Terra, Uhart, Marcela M., Epstein, Jonathan H., Machalaba, Catherine, Rostal, Melinda K., Dawson, Patrick, Hagan, Emily, Sullivan, Ava, Li, Hongying, Chmura, Aleksei A., Latinne, Alice, Lange, Christian, O’Rourke, Tammie, Olson, Sarah, Keatts, Lucy, Mendoza, A. Patricia, Perez, Alberto, de Paula, Cátia Dejuste, Zimmerman, Dawn, Valitutto, Marc, LeBreton, Matthew, McIver, David, Islam, Ariful, Duong, Veasna, Mouiche, Moctar, Shi, Zhengli, Mulembakani, Prime, Kumakamba, Charles, Ali, Mohamed, Kebede, Nigatu, Tamoufe, Ubald, Bel-Nono, Samuel, Camara, Alpha, Pamungkas, Joko, Coulibaly, Kalpy J., Abu-Basha, Ehab, Kamau, Joseph, Silithammavong, Soubanh, Desmond, James, Hughes, Tom, Shiilegdamba, Enkhtuvshin, Aung, Ohnmar, Karmacharya, Dibesh, Nziza, Julius, Ndiaye, Daouda, Gbakima, Aiah, sajali, Zikankuba, Wacharapluesadee, Supaporn, Robles, Erika Alandia, Ssebide, Benard, Suzán, Gerardo, Aguirre, Luis F., Solorio, Monica R., Dhole, Tapan N., Nga, Nguyen T. T., Hitchens, Peta L., Joly, Damien O., Saylors, Karen, Fine, Amanda, Murray, Suzan, Karesh, William B., Daszak, Peter, Mazet, Jonna A. K., and Johnson, Christine K.

Published
2023
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3. Wildlife in Cameroon harbor diverse coronaviruses, including many closely related to human coronavirus 229E.

Author

Ntumvi, Nkom, Ndze, Valantine, Gillis, Amethyst, Le Doux Diffo, Joseph, Tamoufe, Ubald, Takuo, Jean-Michel, Mouiche, Moctar, Nwobegahay, Julius, LeBreton, Matthew, Rimoin, Anne, Schneider, Bradley, Monagin, Corina, McIver, David, Roy, Sanjit, Ayukekbong, James, Saylors, Karen, Joly, Damien, Wolfe, Nathan, Rubin, Edward, and Lange, Christian

Subjects
Coronavirus, HCoV-229E, bats, cameroon, seasonality, wildlife
Abstract

Zoonotic spillover of animal viruses into human populations is a continuous and increasing public health risk. Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) highlights the global impact of emergence. Considering the history and diversity of coronaviruses (CoVs), especially in bats, SARS-CoV-2 will likely not be the last to spillover from animals into human populations. We sampled and tested wildlife in the Central African country Cameroon to determine which CoVs are circulating and how they relate to previously detected human and animal CoVs. We collected animal and ecological data at sampling locations and used family-level consensus PCR combined with amplicon sequencing for virus detection. Between 2003 and 2018, samples were collected from 6,580 animals of several different orders. CoV RNA was detected in 175 bats, a civet, and a shrew. The CoV RNAs detected in the bats represented 17 different genetic clusters, coinciding with alpha (n = 8) and beta (n = 9) CoVs. Sequences resembling human CoV-229E (HCoV-229E) were found in 40 Hipposideridae bats. Phylogenetic analyses place the human-derived HCoV-229E isolates closest to those from camels in terms of the S and N genes but closest to isolates from bats for the envelope, membrane, and RNA-dependent RNA polymerase genes. The CoV RNA positivity rate in bats varied significantly (P

Published
2022

4. Predicting the potential for zoonotic transmission and host associations for novel viruses

Author

Pandit, Pranav S, Anthony, Simon J, Goldstein, Tracey, Olival, Kevin J, Doyle, Megan M, Gardner, Nicole R, Bird, Brian, Smith, Woutrina, Wolking, David, Gilardi, Kirsten, Monagin, Corina, Kelly, Terra, Uhart, Marcela M, Epstein, Jonathan H, Machalaba, Catherine, Rostal, Melinda K, Dawson, Patrick, Hagan, Emily, Sullivan, Ava, Li, Hongying, Chmura, Aleksei A, Latinne, Alice, Lange, Christian, O’Rourke, Tammie, Olson, Sarah, Keatts, Lucy, Mendoza, A Patricia, Perez, Alberto, de Paula, Cátia Dejuste, Zimmerman, Dawn, Valitutto, Marc, LeBreton, Matthew, McIver, David, Islam, Ariful, Duong, Veasna, Mouiche, Moctar, Shi, Zhengli, Mulembakani, Prime, Kumakamba, Charles, Ali, Mohamed, Kebede, Nigatu, Tamoufe, Ubald, Bel-Nono, Samuel, Camara, Alpha, Pamungkas, Joko, Coulibaly, Kalpy J, Abu-Basha, Ehab, Kamau, Joseph, Silithammavong, Soubanh, Desmond, James, Hughes, Tom, Shiilegdamba, Enkhtuvshin, Aung, Ohnmar, Karmacharya, Dibesh, Nziza, Julius, Ndiaye, Daouda, Gbakima, Aiah, Sajali, Zikankuba, Wacharapluesadee, Supaporn, Robles, Erika Alandia, Ssebide, Benard, Suzán, Gerardo, Aguirre, Luis F, Solorio, Monica R, Dhole, Tapan N, Nga, Nguyen TT, Hitchens, Peta L, Joly, Damien O, Saylors, Karen, Fine, Amanda, Murray, Suzan, Karesh, William B, Daszak, Peter, Mazet, Jonna AK, and Johnson, Christine K

Subjects
Biological Sciences, Biomedical and Clinical Sciences, Infectious Diseases, 2.2 Factors relating to the physical environment, 2.1 Biological and endogenous factors, Infection, Africa, Animals, Animals, Wild, Host Specificity, Humans, Viruses, Zoonoses, PREDICT Consortium, Biological sciences, Biomedical and clinical sciences
Abstract

Host-virus associations have co-evolved under ecological and evolutionary selection pressures that shape cross-species transmission and spillover to humans. Observed virus-host associations provide relevant context for newly discovered wildlife viruses to assess knowledge gaps in host-range and estimate pathways for potential human infection. Using models to predict virus-host networks, we predicted the likelihood of humans as hosts for 513 newly discovered viruses detected by large-scale wildlife surveillance at high-risk animal-human interfaces in Africa, Asia, and Latin America. Predictions indicated that novel coronaviruses are likely to infect a greater number of host species than viruses from other families. Our models further characterize novel viruses through prioritization scores and directly inform surveillance targets to identify host ranges for newly discovered viruses.

Published
2022

6. Evaluation of bat adenoviruses suggests co-evolution and host roosting behaviour as drivers for diversity.

Author

Ntumvi, Nkom, Diffo, Joseph, Tamoufe, Ubald, Ndze, Valantine, Takuo, Jean-Michel, Mouiche, Moctar, Nwobegahay, Julius, LeBreton, Matthew, Gillis, Amethyst, Rimoin, Anne, Schneider, Bradley, Monagin, Corina, McIver, David, Joly, Damien, Wolfe, Nathan, Rubin, Edward, and Lange, Christian

Subjects
Africa, adenovirus, bat, diversity, evolution, species barrier, Adenoviridae, Animals, Biodiversity, Biological Evolution, Chiroptera, Host Specificity, Humans, Phylogeny
Abstract

Adenoviruses (AdVs) are diverse pathogens of humans and animals, with several dozen bat AdVs already identified. Considering that over 100 human AdVs are known, and the huge diversity of bat species, many bat AdVs likely remain undiscovered. To learn more about AdV prevalence, diversity and evolution, we sampled and tested bats in Cameroon using several PCR assays for viral and host DNA. AdV DNA was detected in 14 % of the 671 sampled animals belonging to 37 different bat species. There was a correlation between species roosting in larger groups and AdV DNA detection. The detected AdV DNA belonged to between 28 and 44 different, mostly previously unknown, mastadenovirus species. The novel isolates are phylogenetically diverse and while some cluster with known viruses, others appear to form divergent new clusters. The phylogenetic tree of novel and previously known bat AdVs does not mirror that of the various host species, but does contain structures consistent with a degree of virus-host co-evolution. Given that closely related isolates were found in different host species, it seems likely that at least some bat AdVs have jumped species barriers, probably in the more recent past; however, the tree is also consistent with such events having taken place throughout bat AdV evolution. AdV diversity was highest in bat species roosting in large groups. The study significantly increased the diversity of AdVs known to be harboured by bats, and suggests that host behaviours, such as roosting size, may be what limits some AdVs to one species rather than an inability of AdVs to infect other related hosts.

Published
2021

7. Coronavirus surveillance in wildlife from two Congo basin countries detects RNA of multiple species circulating in bats and rodents

Author

Kumakamba, Charles, Niama, Fabien R, Muyembe, Francisca, Mombouli, Jean-Vivien, Kingebeni, Placide Mbala, Nina, Rock Aime, Lukusa, Ipos Ngay, Bounga, Gerard, N'Kawa, Frida, Nkoua, Cynthia Goma, Atibu Losoma, Joseph, Mulembakani, Prime, Makuwa, Maria, Tamufe, Ubald, Gillis, Amethyst, LeBreton, Matthew, Olson, Sarah H, Cameron, Kenneth, Reed, Patricia, Ondzie, Alain, Tremeau-Bravard, Alex, Smith, Brett R, Pante, Jasmine, Schneider, Bradley S, McIver, David J, Ayukekbong, James A, Hoff, Nicole A, Rimoin, Anne W, Laudisoit, Anne, Monagin, Corina, Goldstein, Tracey, Joly, Damien O, Saylors, Karen, Wolfe, Nathan D, Rubin, Edward M, Bagamboula MPassi, Romain, Muyembe Tamfum, Jean J, and Lange, Christian E

Subjects
Infectious Diseases, Genetics, Emerging Infectious Diseases, Prevention, Biotechnology, Infection, Good Health and Well Being, Animals, Animals, Wild, Chiroptera, Congo, Coronavirus, Coronavirus Infections, Democratic Republic of the Congo, Environmental Monitoring, Phylogeny, RNA, Viral, Rodentia, General Science & Technology
Abstract

Coronaviruses play an important role as pathogens of humans and animals, and the emergence of epidemics like SARS, MERS and COVID-19 is closely linked to zoonotic transmission events primarily from wild animals. Bats have been found to be an important source of coronaviruses with some of them having the potential to infect humans, with other animals serving as intermediate or alternate hosts or reservoirs. Host diversity may be an important contributor to viral diversity and thus the potential for zoonotic events. To date, limited research has been done in Africa on this topic, in particular in the Congo Basin despite frequent contact between humans and wildlife in this region. We sampled and, using consensus coronavirus PCR-primers, tested 3,561 wild animals for coronavirus RNA. The focus was on bats (38%), rodents (38%), and primates (23%) that posed an elevated risk for contact with people, and we found coronavirus RNA in 121 animals, of which all but two were bats. Depending on the taxonomic family, bats were significantly more likely to be coronavirus RNA-positive when sampled either in the wet (Pteropodidae and Rhinolophidae) or dry season (Hipposideridae, Miniopteridae, Molossidae, and Vespertilionidae). The detected RNA sequences correspond to 15 alpha- and 6 betacoronaviruses, with some of them being very similar (>95% nucleotide identities) to known coronaviruses and others being more unique and potentially representing novel viruses. In seven of the bats, we detected RNA most closely related to sequences of the human common cold coronaviruses 229E or NL63 (>80% nucleotide identities). The findings highlight the potential for coronavirus spillover, especially in regions with a high diversity of bats and close human contact, and reinforces the need for ongoing surveillance.

Published
2021

8. Bridging the gap: Using reservoir ecology and human serosurveys to estimate Lassa virus spillover in West Africa

Author

Basinski, Andrew J, Fichet-Calvet, Elisabeth, Sjodin, Anna R, Varrelman, Tanner J, Remien, Christopher H, Layman, Nathan C, Bird, Brian H, Wolking, David J, Monagin, Corina, Ghersi, Bruno M, Barry, Peter A, Jarvis, Michael A, Gessler, Paul E, and Nuismer, Scott L

Subjects
Climate Change Impacts and Adaptation, Environmental Sciences, Emerging Infectious Diseases, Clinical Research, Infectious Diseases, Prevention, 2.2 Factors relating to the physical environment, Aetiology, Infection, Africa, Western, Animals, Animals, Wild, Computational Biology, Disease Reservoirs, Ecology, Humans, Lassa Fever, Lassa virus, Machine Learning, Models, Biological, Models, Statistical, Risk, Rodentia, Mathematical Sciences, Biological Sciences, Information and Computing Sciences, Bioinformatics
Abstract

Forecasting the risk of pathogen spillover from reservoir populations of wild or domestic animals is essential for the effective deployment of interventions such as wildlife vaccination or culling. Due to the sporadic nature of spillover events and limited availability of data, developing and validating robust, spatially explicit, predictions is challenging. Recent efforts have begun to make progress in this direction by capitalizing on machine learning methodologies. An important weakness of existing approaches, however, is that they generally rely on combining human and reservoir infection data during the training process and thus conflate risk attributable to the prevalence of the pathogen in the reservoir population with the risk attributed to the realized rate of spillover into the human population. Because effective planning of interventions requires that these components of risk be disentangled, we developed a multi-layer machine learning framework that separates these processes. Our approach begins by training models to predict the geographic range of the primary reservoir and the subset of this range in which the pathogen occurs. The spillover risk predicted by the product of these reservoir specific models is then fit to data on realized patterns of historical spillover into the human population. The result is a geographically specific spillover risk forecast that can be easily decomposed and used to guide effective intervention. Applying our method to Lassa virus, a zoonotic pathogen that regularly spills over into the human population across West Africa, results in a model that explains a modest but statistically significant portion of geographic variation in historical patterns of spillover. When combined with a mechanistic mathematical model of infection dynamics, our spillover risk model predicts that 897,700 humans are infected by Lassa virus each year across West Africa, with Nigeria accounting for more than half of these human infections.

Published
2021

9. Implementing One Health approaches to confront emerging and re-emerging zoonotic disease threats: lessons from PREDICT

Author

Kelly, Terra R, Machalaba, Catherine, Karesh, William B, Crook, Paulina Zielinska, Gilardi, Kirsten, Nziza, Julius, Uhart, Marcela M, Robles, Erika Alandia, Saylors, Karen, Joly, Damien O, Monagin, Corina, Mangombo, Prime Mulembakani, Kingebeni, Placide Mbala, Kazwala, Rudovick, Wolking, David, Smith, Woutrina, and Mazet, Jonna AK

Subjects
Health Services and Systems, Health Sciences, Biodefense, Infectious Diseases, Influenza, Pneumonia & Influenza, Prevention, Emerging Infectious Diseases, Vaccine Related, Infection, Good Health and Well Being, Emerging infectious diseases, Global health, One Health, Zoonotic diseases, PREDICT Consortium, Health services and systems
Abstract

Recurring outbreaks of emerging and re-emerging zoonoses, such as Ebola virus disease, avian influenza, and Nipah virus, serve as a reminder that the health of humans, animals, and the environment are interconnected and that early response to emerging zoonotic pathogens requires a coordinated, interdisciplinary, cross-sectoral approach. As our world becomes increasingly connected, emerging diseases pose a greater threat, requiring coordination at local, regional, and global levels. One Health is a multisectoral, transdisciplinary, and collaborative approach promoted to more effectively address these complex health threats. Despite strong advocacy for One Health, challenges for practical implementation remain. Here we discuss the value of the One Health approach for addressing global health challenges. We also share strategies applied to achieve successful outcomes through the USAID Emerging Pandemic Threats Program PREDICT project, which serve as useful case studies for implementing One Health approaches. Lastly, we explore methods for promoting more formal One Health implementation to capitalize on the added value of shared knowledge and leveraged resources.

Published
2020

11. Author Correction: The discovery of Bombali virus adds further support for bats as hosts of ebolaviruses.

Author

Goldstein, Tracey, Anthony, Simon J, Gbakima, Aiah, Bird, Brian H, Bangura, James, Tremeau-Bravard, Alexandre, Belaganahalli, Manjunatha N, Wells, Heather L, Dhanota, Jasjeet K, Liang, Eliza, Grodus, Michael, Jangra, Rohit K, DeJesus, Veronica A, Lasso, Gorka, Smith, Brett R, Jambai, Amara, Kamara, Brima O, Kamara, Sorie, Bangura, William, Monagin, Corina, Shapira, Sagi, Johnson, Christine K, Saylors, Karen, Rubin, Edward M, Chandran, Kartik, Lipkin, W Ian, and Mazet, Jonna AK

Subjects
Microbiology, Medical Microbiology
Abstract

In the version of this Article originally published, the bat species for 12 individuals were incorrectly identified in Supplementary Table 1 and 2. After resequencing the MT-CytB and MT-CO1 segments and reviewing the data, the authors have corrected the errors for these 12 animals. In the amended version of the Supplementary Information, Supplementary Tables 1 and 2 have been replaced to include the corrected host species information. None of the 12 bats affected were positive for the Bombali virus, and the conclusions of the study are therefore unchanged.

Published
2018

12. The discovery of Bombali virus adds further support for bats as hosts of ebolaviruses

Author

Goldstein, Tracey, Anthony, Simon J, Gbakima, Aiah, Bird, Brian H, Bangura, James, Tremeau-Bravard, Alexandre, Belaganahalli, Manjunatha N, Wells, Heather L, Dhanota, Jasjeet K, Liang, Eliza, Grodus, Michael, Jangra, Rohit K, DeJesus, Veronica A, Lasso, Gorka, Smith, Brett R, Jambai, Amara, Kamara, Brima O, Kamara, Sorie, Bangura, William, Monagin, Corina, Shapira, Sagi, Johnson, Christine K, Saylors, Karen, Rubin, Edward M, Chandran, Kartik, Lipkin, W Ian, and Mazet, Jonna AK

Subjects
Vaccine Related, Aetiology, 2.2 Factors relating to the physical environment, Infection, Animals, Cell Line, Tumor, Chiroptera, Ebolavirus, Genome, Viral, Humans, Phylogeny, Viral Envelope Proteins, Viral Load, Virus Internalization, Microbiology, Medical Microbiology
Abstract

Here we describe the complete genome of a new ebolavirus, Bombali virus (BOMV) detected in free-tailed bats in Sierra Leone (little free-tailed (Chaerephon pumilus) and Angolan free-tailed (Mops condylurus)). The bats were found roosting inside houses, indicating the potential for human transmission. We show that the viral glycoprotein can mediate entry into human cells. However, further studies are required to investigate whether exposure has actually occurred or if BOMV is pathogenic in humans.

Published
2018

16. Targeted genomic sequencing with probe capture for discovery and surveillance of coronaviruses in bats

Author

Kuchinski, Kevin S, primary, Loos, Kara D, additional, Suchan, Danae M, additional, Russell, Jennifer N, additional, Sies, Ashton N, additional, Kumakamba, Charles, additional, Muyembe, Francisca, additional, Mbala Kingebeni, Placide, additional, Ngay Lukusa, Ipos, additional, N’Kawa, Frida, additional, Atibu Losoma, Joseph, additional, Makuwa, Maria, additional, Gillis, Amethyst, additional, LeBreton, Matthew, additional, Ayukekbong, James A, additional, Lerminiaux, Nicole A, additional, Monagin, Corina, additional, Joly, Damien O, additional, Saylors, Karen, additional, Wolfe, Nathan D, additional, Rubin, Edward M, additional, Muyembe Tamfum, Jean J, additional, Prystajecky, Natalie A, additional, McIver, David J, additional, Lange, Christian E, additional, and Cameron, Andrew DS, additional

Published
2022
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17. Author response: Targeted genomic sequencing with probe capture for discovery and surveillance of coronaviruses in bats

Author

Kuchinski, Kevin S, primary, Loos, Kara D, additional, Suchan, Danae M, additional, Russell, Jennifer N, additional, Sies, Ashton N, additional, Kumakamba, Charles, additional, Muyembe, Francisca, additional, Mbala Kingebeni, Placide, additional, Ngay Lukusa, Ipos, additional, N’Kawa, Frida, additional, Atibu Losoma, Joseph, additional, Makuwa, Maria, additional, Gillis, Amethyst, additional, LeBreton, Matthew, additional, Ayukekbong, James A, additional, Lerminiaux, Nicole A, additional, Monagin, Corina, additional, Joly, Damien O, additional, Saylors, Karen, additional, Wolfe, Nathan D, additional, Rubin, Edward M, additional, Muyembe Tamfum, Jean J, additional, Prystajecky, Natalie A, additional, McIver, David J, additional, Lange, Christian E, additional, and Cameron, Andrew DS, additional

Published
2022
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18. The Vietnam Initiative on Zoonotic Infections (VIZIONS): A Strategic Approach to Studying Emerging Zoonotic Infectious Diseases

Author

Rabaa, Maia A., Tue, Ngo Tri, Phuc, Tran My, Carrique-Mas, Juan, Saylors, Karen, Cotten, Matthew, Bryant, Juliet E., Nghia, Ho Dang Trung, Cuong, Nguyen Van, Pham, Hong Anh, Berto, Alessandra, Phat, Voong Vinh, Dung, Tran Thi Ngoc, Bao, Long Hoang, Hoa, Ngo Thi, Wertheim, Heiman, Nadjm, Behzad, Monagin, Corina, van Doorn, H. Rogier, Rahman, Motiur, Tra, My Phan Vu, Campbell, James I., Boni, Maciej F., Tam, Pham Thi Thanh, van der Hoek, Lia, Simmonds, Peter, Rambaut, Andrew, Toan, Tran Khanh, Van Vinh Chau, Nguyen, Hien, Tran Tinh, Wolfe, Nathan, Farrar, Jeremy J., Thwaites, Guy, Kellam, Paul, Woolhouse, Mark E. J., and Baker, Stephen

Published
2015
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19. Targeted genomic sequencing with probe capture for discovery and surveillance of coronaviruses in bats

Author

Kuchinski, Kevin S., primary, Loos, Kara D., additional, Suchan, Danae M., additional, Russell, Jennifer N., additional, Sies, Ashton N., additional, Kumakamba, Charles, additional, Muyembe, Francisca, additional, Kingebeni, Placide Mbala, additional, Lukusa, Ipos Ngay, additional, N’Kawa, Frida, additional, Losoma, Joseph Atibu, additional, Makuwa, Maria, additional, Gillis, Amethyst, additional, LeBreton, Matthew, additional, Ayukekbong, James A., additional, Monagin, Corina, additional, Joly, Damien O., additional, Saylors, Karen, additional, Wolfe, Nathan D., additional, Rubin, Edward M., additional, Tamfum, Jean J. Muyembe, additional, Prystajecky, Natalie A., additional, McIver, David J., additional, Lange, Christian E., additional, and Cameron, Andrew D.S., additional

Published
2022
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20. Predicting the potential for zoonotic transmission and host associations for novel viruses

Author

Pandit, Pranav, primary, Anthony, Simon, additional, Goldstein, Tracey, additional, Olival, Kevin, additional, Doyle, Megan, additional, Gardner, Nicole, additional, Bird, Brian, additional, Smith, Woutrina, additional, Wolking, David, additional, Gilardi, Kristen, additional, Monagin, Corina, additional, Kelly, Terra, additional, Uhart, Marcela, additional, Epstein, Jonathan, additional, Machalaba, Catherine, additional, Rostal, Melinda, additional, Dawson, Patrick, additional, Hagan, Emily, additional, Sullivan, Ava, additional, Li, Hongying, additional, Chmura, Aleksei, additional, Latinne, Alice, additional, Lange, Christian, additional, O'Rourke, Tammie, additional, Olson, Sarah, additional, Keatts, Lucy, additional, Mendoza, A. Patricia, additional, Perez, Alberto, additional, de Paula, Catia Dejuste, additional, Zimmerman, Dawn, additional, Valitutto, Marc, additional, LeBreton, Matthew, additional, McIver, David, additional, Islam, Ariful, additional, Duong, Veasna, additional, Mouiche, Moctar, additional, Shi, Zheng-Li, additional, Mulembakani, Prime, additional, Kumakamba, Charles, additional, Ali, Mohamed, additional, Kebede, Nigatu, additional, Tamoufe, Ubald, additional, Bel-Nono, Samuel, additional, Camara, Alpha, additional, Pamungkas, Joko, additional, Coulibaly, Julien Kalpy, additional, Abu-Basha, Ehab, additional, Kamau, Joseph, additional, Silithammavong, Soubanh, additional, Desmond, James, additional, Hughes, Tom, additional, Shiilegdamba, Enkhtuvshin, additional, Aung, Ohnmar, additional, Karmacharya, Dibesh, additional, Nziza, Julius, additional, Ndiaye, Daouda, additional, Gbakima, Aiah, additional, Sijali, Zikankuba, additional, Wacharapluesadee, Supaporn, additional, Robles, Erika Alandia, additional, Ssebide, Benard, additional, Suzán, Gerardo, additional, Aguirre, Luis, additional, Solorio, Monica, additional, Dhole, Tapan, additional, Hitchens, Peta, additional, Joly, Damien, additional, Saylors, Karen, additional, Fine, Amanda, additional, Murray, Suzan, additional, Karesh, William, additional, Daszak, Peter, additional, Mazet, Jonna, additional, Consortium, PREDICT, additional, and Johnson, Christine, additional

Published
2022
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21. Enterovirus Sequence Data Obtained from Primate Samples in Central Africa Suggest a High Prevalence of Enteroviruses

Author

Ngay Lukusa, Ipos, primary, Takuo, Jean-Michel, additional, Lumbu Banza, Christelle, additional, Le Doux Diffo, Joseph, additional, Mbala Kingebeni, Placide, additional, Ntumvi, Nkom F., additional, Atibu Losoma, Joseph, additional, Tamoufe, Ubald, additional, Gillis, Amethyst, additional, LeBreton, Matthew, additional, Ayukekbong, James, additional, Joly, Damien O., additional, Schneider, Brad S., additional, Monagin, Corina, additional, Makuwa, Maria, additional, Wolfe, Nathan D., additional, Rubin, Edward M., additional, Muyembe-Tamfum, Jean-Jacques, additional, and Lange, Christian E., additional

Published
2021
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22. Wildlife in Cameroon harbor diverse coronaviruses including many isolates closely related to human coronavirus 229E

Author

Ntumvi, Nkom F., primary, Ndze, Valantine Ngum, additional, Gillis, Amethyst, additional, Doux Diffo, Joseph Le, additional, Tamoufe, Ubald, additional, Takuo, Jean-Michel, additional, Mouiche, Moctar M. M., additional, Nwobegahay, Julius, additional, LeBreton, Matthew, additional, Rimoin, Anne W., additional, Schneider, Bradley S., additional, Monagin, Corina, additional, McIver, David J., additional, Roy, Sanjit, additional, Ayukekbong, James A., additional, Saylors, Karen, additional, Joly, Damien O., additional, Wolfe, Nathan D., additional, Rubin, Edward M., additional, and Lange, Christian E., additional

Published
2021
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23. Socializing One Health: an innovative strategy to investigate social and behavioral risks of emerging viral threats

Author

Saylors, Karen, Wolking, David J., Hagan, Emily, Martinez, Stephanie, Francisco, Leilani, Euren, Jason, Olson, Sarah H., Miller, Maureen, Fine, Amanda E., Thanh, Nga Nguyen Thi, Tran Minh, Phuc, Kalengkongan, Jusuf D., Kusumaningrum, Tina, Latinne, Alice, Pamungkas, Joko, Safari, Dodi, Saputro, Suryo, Bamba, Djeneba, Coulibaly, Kalpy Julien, Dosso, Mireille, Laudisoit, Anne, N'guettia Jean, Kouassi Manzan, Dutta, Shusmita, Islam, Ariful, Shano, Shahanaj, Mwanzalila, Mwokozi I., Trupin, Ian P., Gbakima, Aiah, Bangura, James, Yondah, Sylvester T., Karmacharya, Dibesh, Shrestha, Rima D., Kamta, Marcelle Annie Matsida, Mouiche, Mohamed Moctar Mouliom, Ndolo, Hilarion Moukala, Niama, Fabien Roch, Onikrotin, Dionne, Daszak, Peter, Johnson, Christine K., Mazet, Jonna A. K., Abaneh, Ola, Ababneh, Mustafa, Rafia, Jum, Sukor, Abd, Abdullah, Mohd Lufti, Abedin, Josefina, Abu-Basha, Ehab, Ali, Mohamed, Beal Akoundze, Junior, Akpaki, Joel, Al Hanandeh, Sief Addeen, Al Omari, Bilal, Al Shakil, Abdullah, Al-Zghoul, Mohammed, Albart, Stephenie Ann, Alshammari, Abdullah, Amarneh, Basil H., Ampofo, William, Andrew, Victoria, Ahn, Dao Le, Ankhanbaatar, Ulaankhuu, Anthony, Simon, Antonjaya, Ungke, Araya, Kidan, Arku, Jallah, Arshat, Norsharina, Asigbee, Theodore, Aung, Ohnmar, Awuni, Joseph, Ayukebong, James, Azian, Mohammed, Aziz, Nor Adilah, Ba, Aminata, Bassan, Ganzorig, Bagato, Ola, Bamba, Aboubacar, Bamba, Djenba, Barkhasbaatar, Ariunbaatar, Barrera, June, Basaraba, Cale, Bel-nono, Samuel, Belaganahalli, Manjunatha, Belay, Desalgen, Belkharia, Jaber, Binol, Ridzki M. F., Bird, Brian, Bista, Manisha, Biswas, Pitu, Blake, Matthew, Boatemaa, Linda, Bonason, Margret, Brandful, James, Brown, Joseph, Brownstein, John, Camara, Mamadi, Camara, Salif, Chai, Daniel, Chakraborty, Debapriyo, Chale, Hannah, Chaudhary, Ashok, Chea, Sokha, Chmura, Aleksei, Goossens, Benoit, Chow, Andrew, Churchill, Carolina, Commey, Abraham, Couacy-Hymann, Emmanuel, Coulibaly, Julien Kalpy, Cranfield, Michael, Damanik, Wirda, Damdinjav, Batchullum, Danial, Norhidayah, Dasak, Peter, David, Runie, Dawson, Patrick, Dembele, Arjouma, Deme, Awa, Desmond, James, Dewantari, Arghianditya Kresno, Dhanota, Jaseet, Dhole, Tapan, Diep, Nguyen Thi, Dionkounda, Artistide, Diop, Gaye Laye, Dodd, Kimberly, Dogby, Otilia, Dorjnyam, Tumendemberel, Dosso, Mireielle, Doumbouya, Kalil, Doumbouya, Mohamed Idriss, Doyle, Megan, Dramou, Simone, Drazenovich, Tracy, Duc Ahn, Dang, Duc Luu, Bach, Duendkae, Prateep, Duoc, Vu Trong, Duong, Tran Nhu, Duong, Veasna, Dursman, Huda, Dussart, Phillipe, Ee, Tan Jun, Ekiri, Abel, El Rifay, Amira S., El Shesheny, Rabel, El Taween, Ahmed N., Emmanuel, Zena Babu, Epstein, Jonathan H., Evans, Tierra Smiley, Fahmawi, Alaa, Fahn, Simeon, Feferholtz, Yasha, Ferdous, Jinnat, Fine, Amanda, Flora, Meerjady, Fransisco, Leilani, Fui Fui, Lem, Gabourie, Taylor, Gani, Millawati, Garbo, Michael, Gardner, Nicole, Gbamele, Marie, Ge, Xingyi, Gee, Lee Heng, Genovese, Brooke, Gibson, Alexandra, Gilardi, Kirsten, Gilbert, Martin, Gillis, Amethyst, Ginsos, Andrew, Godji Gnabro, Privat, Goldstein, Tracey, Gomaa, Moktar, Gomis, Jules, Gonzalez, Kevin, Grange, Zoe, Greig, Denise, Grodus, Michael, Gueu, Kpon Kakeuma Romeo, Gutierrez, Leticia, Haba, Dan Marcelin, Hamid, Suraya, Harris, Daniel K., Hashim, Abdul Kadir Abu, Hassan, Moushumi, Hassan, Quazar Nizamuddin, He, Qun, Hemachudha, Thiravat, Henry, Helen, Herbert, Ronald, Hijazeen, Zaidoun, Hilarion, Moukala Ndolo, Hill, Rebecca, Hoa, Nguyen Thi, Horwood, Paul, Hossain, Md. Enayet, Hossain, Saddam, Htun, Moh Moh, Hu, Ben, Hughes, Tom, Hul, Vibol, Van, Vo, Hussein, Fatima, Indola, Ghislain Dzeret, Iskandriati, Diah, Islam, Md. Tarikul, Islam, Shariful, Isnaim Ismail, Mohd, Ismail, Zuhair Bani, Iyanya, Jacques, Jaimin, Joel Judson, Jambai, Amara, Japning, Jeffrine Rovie Ryan, Japrin, Alexter, Jean Louis, Frantz, Joe, Titus, Johnson, Erica, Joly, Damien, Joshi, Jyotsna, Kalengkongan, Jusuf, Kalivogui, Douokoro, Kamara-Chieyoe, Nenneh, Kamau, Joseph, Kambale Syaluha, Eddy, Kandeil, Ahmed, Kane, Yogouba, Karesh, William, Kargo, Kandeh, Kasenda, Novie, Kayali, Ghazi, Kayed, Ahmed S., Kazwala, Rudovick, Ke, Changwen, Keates, Lucy, Kebede, Nigatu, Khamphaphongphane, Bouaphanh, Kheong, Chong Chee, Kilonzo, Christopher, Koffa, Ma-Sue, Kollie, Amos G., Kondiano, Marcel Sidik, Koropo, Michel, Kouamé Kouakou, Valere, Kouassi Koffi, Eugene, Kourouma, Mariam, Koutate, Abdoulaye Ousmane, Kowel, Citra Liv, Krou, Hermann Assemien, Kumakamba, Charles, Kutkat, Omnia, Lamah, François, Lan, Nguyen Thi, Lane, Jennifer, Lange, Christian, Larmouth, Emmanuel, Le Doux, Joseph Diffo, Leasure, Elizabeth, Leasure, Katherine, LeBreton, Mat, Lee, Jimmy, Lee, Helen, Lee, Mei Ho, Leno, Amara, Li, Hongying, Liang, Eliza, Liang, Neal, Lim, Dorothy, Lipkin, W. Ian, Liu, Jun, Lo, Modou Moustafa, Lojivis, Leonoris, Long, Nguyen Van, Lucas, Ashley, Lukusa, Jean Paul, Lungay, Victor, Lushima, Shongo, Lutwama, Julius, Ma, Wenjun, Machalaba, Catherine, Maganga, Grace, Magesa, Walter Simon, Mahmoud, Sara H., Makuwa, Maria, Makweta, Asha, Mamun, Abdullah Al, Manandhar, Prajwol, Maneeorn, Patarapol, Mann, Harjeet, Maomy, Bhele, Maptue, Victorine, Mathew, Alice, Mavoungou, Yanne Vanessa, Maw, Min Thein, Mazet, Jonna, Mbala, Placide, Mbuba, Emmanuel, Mbunwe, Eric, McIver, David, Mendelsohn, Emma, Miegakanda, Valchy Bel-Bebi, Minh, Phan Quang, Mkali, Happy, Moatasim, Yassmin, Mombouli, Jean Vivien, Monagin, Corina, Montecino-Latorre, Diego, Mossoun Mossoun, Arsene, Mostafa, Ahmed, Mouiche, Moctar, Mpassi, Romain Bagamboula, Msigwa, Alphonce, Mudakikwa, Antoine, Mugok, Laura Benedict, Mulembakani, Prime, Murray, Suzan, Musa, Fakhrul Hatta, Musabimana, Pacifique, Mutura, Samson, Mwamlima, Tunu, Mwanzanilla, Mwokozi, Myaing, Tin Tin, Myat, Theingi Win, Myo Chit, Aung, N’faly, Magassouba, N’Guettia, Manzan Jean, N’télo, Anatole, Nakimera, Sylivia, Nam, Vu Sinh, Napit, Rajindra, Nathan, Senthilvel K. S. S., Navarrete-Macias, Isamara, Ndebe, Kortu M., Ndiaye, Amadou, Ndiaye, Daouda, Negash, Yohannes, Nga, Nguyen Thi Thanh, Ngay, Ipos, Ngoc, Pham Thi Bich, Niama, Fabien, Nina, Rock Aimé, Niyonzima, Schadrack, Nkom, Felix, Nkoua, Cynthia, Noordin, Noorliza, Noviana, Rachmitasari, Nwobegahay, Julius, Nziza, Julius, O’Rourke, Daniel, O’Rourke, Tammie, Obodai, Evangeline, Okello Okwir, Ricky, Olival, Kevin, Olson, Sarah, Olva, Onkirotin Dionne, Ontiveros, Victoria, Opook, Fernandes, Panchadcharam, Chandrawathani, Pandit, Pranav, Parra, Henri-Joseph, Phuc, Tran Minh, Phuong, Nguyen Thanh, Poultolnor, Jackson Y., Pradhan, Saman, Preston, Eunah Cho, Pruvot, Mathieu, Purevtseren, Dulam, Puri, Dhiraj, Quang, Le Tin Vinh, Rachmitasari, Novie, Rahman, Kaisar, Rahman, Mizanur, Rahman, Mohammed Ziaur, Rahman, Mustafizur, Ramirez, Diana, Randhawa, Nistara, Raut, Samita, Rosario, Joseph, Ross, Albert, Ross, Noam, Rostal, Melinda, Roualdes, Pamela, Rubin, Eddy, Rumi, Aftab Uddin, Rundi, Christina, Sackie, Melkor, Sajali, Zikankuba, Samuels, Sandra G, Sango, Mathias, Saptu, Ammar Rafidah, Saraka, Daniel N’guessan, Sartee, Alvis A., Sayandouno, Sia Alida, Seck, Mame Cheikh, Sedor, Victoria, Sharma, Ajay Narayan, Sharminie, Velsri, Shehata, Mahmoud M., Sheikh, Gafur, Shi, Zhengli, Shiilegdamba, Enkhtuvshin, Shrestha, Bishwo, Shrestha, Rima, Sidibey, Mohammed, Silithammavong, Soubanh, Simon, Daniel, Sion, Emilly, Sipangkui, Symphorosa, Sitam, Frankie Thomas, Smith, Brett, Smith, Bridgette, Smith, Woutrina, Sodnom, Batsikhan, Ssebide, Benard, Suleiman, Maria, Sullivan, Ava, Sungif, Nur Amirah, Suu-Ire, Richard, Sy, Mouhamed, Takuo, Jean Michel, Talafha, Hani, Tamoufe, Ubald, Tetteh, Emmanuel, Than Toe, Aung, Thanda, Lanash, Thanh Long, Ngo, Thein, Wai Zin, Theppangna, Watthana, Thinh, Nguyen Duc, Thuy, Hoang Bich, Thuy, Nguyen Thu, Togami, Eri, Tolno, Moise Bendoua, Tolovou, Kevin, Topani, Rahmat, Tremeau-Bravard, Alexandre, Trupin, Ian, Tumushime, Jean Claude, Tun, Kyaw Yan Naing, Turay, Joseph, Uddin, Helal, Uhart, Marcela, Ureda, Nicole, Valitutto, Marc, Verasahib, Khebir, Vodzak, Megan, Wacharapluesadee, Supaporn, Wahad, Mohammad Yuery Wazlan Abdul, Watson, Brooke, Wells, Heather, White, Allison, Willoughby, Anna, Wiyatno, Ageng, Wolking, David, Yang, Xinglou, Yao, Lim Ming, Yombouno, Sayon, Young, Cristin, Zambrana-Torrelio, Carlos, Zeid, Zahidah Izzati, Zghoul, Ghadeer, Zhang, Libiao, Zhang, Yunzhi, Zhu, Guangjian, Zimmerman, Dawn, Zoumarou, Daba, Aguirre, Alonso, Aguirre, Luis, Akongo, Mark-Joel, Alandia Robles, Erika, Ambu, Laurentius, Ayala Aguilar, Glenda, Barcena, Luis, Barradas, Rosario, Basir, Misliah Mohamad, Bogich, Tiffany, Bounga, Gerard, Buchy, Philippe, Bunn, David, Byaruba, Denis, Cameron, Ken, Carroll, Dennis, Cavero, Nancy, Cespedes, Manuel, Che, Xiaoyu, Chiu, Charles, Chor, Kimashalen, Clements, Andrew, Dary Acevedo, Luz, de Almeida Campos, Angelica, De La Puente, Micaela, de Lamballerie, Xavier, de Paula, Catia, Delwart, Eric, Diffo Le Doux, Joseph, Doyle-Capitman, Catherine, Durigon, Edison, Fair, Joseph, Ferrer-Paris, José R., Formenty, Pierre, Galarza, Isabel, Garcia, Joel, Grard, Gilda, Greatorex, Zoe, Harris, Laurie, Hitchens, Peta, Ho, Mei, Hosseini, Parviez, In, Samath, Iñíguez, Volga, Jain, Komal, Jamaluddin, Abd. Aziz, Johnson, Christine, Jones, Kate, Joyner, Priscilla, Kaba, Serge, Kambale, Eddy, Kataregga, Abdulhameed, Kelly, Terra, Khammavong, Kongsy, Kilpatrick, A. Marm, Laimun, Samsir, Lee, Mei-Ho, LeRoy, Eric, Levinson, Jordan, Levy, Marc, Limachi, Rolando, Loh, Elizabeth, Lowenstine, Linda J., Luis Mollericona, José, Maganga, Ruth, Malakalinga, Joseph, Manhas, Melissa, Marra, Pete, Mbabazi, Rachael, Medellín, Rodrigo, Mendoza, Patricia, Miller, Sireeda, Miranda, Flavia, Mitchell, Megan, Mohamed, Ramlan, Mollard, Debbie, Morse, Stephen, Mouellet, Wivine, Moya, Isabel, Murillo, Yovanna, Murray, Kris, Muyembe Tamfum, Jean-Jacques, Nassar, Fernando, Nathan, Sen, Nsengimana, Olivier, Ogg Keatts, Lucy, Ojeda-Flore, Rafael, Okwir Okello, Ricky, Ondzie, Alain, Paweska, Janusz, Pereira, Alisa, Pereira, Victoria, Perez, Alberto, Perez, Jocelyn, Phon, Simorn, Reed, Patricia, Rejmanek, Dan, Rico, Oscar, Rivera, Rosario, Romero, Monica, Roy, Celina, Saepuloh, Uus, Schneider, Brad, Schwind, Jessica, Singhalath, Sinpakhome, Smith, Kristine, Suárez, Fabiola, Suzan, Gerardo, Thanh Nga, Nguyen Thi, Thomas, Kate, Ticona, Herminio, VanWormer, Elizabeth, Villar, Sandra, Weisman, Wendy, Westfall, Michael, Whittier, Chris, Wicker, Leanne, Wolfe, Nathan, Yang, Angela, Zariquiey, Carlos, Zhang, Shu-Yi, Zorine Nkouants, Baudelaire, Zainuddin, Zainal, Chrisman, Cara, Pabst, August, Shek, Amalhin, and Trostle, Murray

Subjects
0301 basic medicine, Behavioral risk, medicine.medical_specialty, Behavioural sciences, Disease, Community integration, Basic Behavioral and Social Science, 03 medical and health sciences, 0302 clinical medicine, Clinical Research, 2.3 Psychological, Behavioral and Social Science, Agency (sociology), medicine, 2.2 Factors relating to the physical environment, GE1-350, Aetiology, One health, Social science research, business.industry, Prevention, Research, Public health, PREDICT Consortium, Public relations, Focus group, Environmental sciences, Good Health and Well Being, 030104 developmental biology, One Health, Multi-disciplinary surveillance, social and economic factors, Public aspects of medicine, RA1-1270, Infection, Psychology, International development, business, 030217 neurology & neurosurgery
Abstract

In an effort to strengthen global capacity to prevent, detect, and control infectious diseases in animals and people, the United States Agency for International Development’s (USAID) Emerging Pandemic Threats (EPT) PREDICT project funded development of regional, national, and local One Health capacities for early disease detection, rapid response, disease control, and risk reduction. From the outset, the EPT approach was inclusive of social science research methods designed to understand the contexts and behaviors of communities living and working at human-animal-environment interfaces considered high-risk for virus emergence. Using qualitative and quantitative approaches, PREDICT behavioral research aimed to identify and assess a range of socio-cultural behaviors that could be influential in zoonotic disease emergence, amplification, and transmission. This broad approach to behavioral risk characterization enabled us to identify and characterize human activities that could be linked to the transmission dynamics of new and emerging viruses. This paper provides a discussion of implementation of a social science approach within a zoonotic surveillance framework. We conducted in-depth ethnographic interviews and focus groups to better understand the individual- and community-level knowledge, attitudes, and practices that potentially put participants at risk for zoonotic disease transmission from the animals they live and work with, across 6 interface domains. When we asked highly-exposed individuals (ie. bushmeat hunters, wildlife or guano farmers) about the risk they perceived in their occupational activities, most did not perceive it to be risky, whether because it was normalized by years (or generations) of doing such an activity, or due to lack of information about potential risks. Integrating the social sciences allows investigations of the specific human activities that are hypothesized to drive disease emergence, amplification, and transmission, in order to better substantiate behavioral disease drivers, along with the social dimensions of infection and transmission dynamics. Understanding these dynamics is critical to achieving health security--the protection from threats to health-- which requires investments in both collective and individual health security. Involving behavioral sciences into zoonotic disease surveillance allowed us to push toward fuller community integration and engagement and toward dialogue and implementation of recommendations for disease prevention and improved health security. Supplementary Information The online version contains supplementary material available at 10.1186/s42522-021-00036-9.

Published
2021

26. Assessing Climate Change Impact on Ecosystems and Infectious Disease: Important Roles for Genomic Sequencing and a One Health Perspective.

Author

B Yeh, Kenneth, B Yeh, Kenneth, M Fair, Jeanne, Smith, Woutrina, Martinez Torres, Teresa, Lucas, Julie, Monagin, Corina, Winegar, Richard, Fletcher, Jacqueline, B Yeh, Kenneth, B Yeh, Kenneth, M Fair, Jeanne, Smith, Woutrina, Martinez Torres, Teresa, Lucas, Julie, Monagin, Corina, Winegar, Richard, and Fletcher, Jacqueline

Abstract

Changes in the Earth's climate and weather continue to impact the planet's ecosystems, including the interface of infectious disease agents with their hosts and vectors. Environmental disasters, natural and human-made activities raise risk factors that indirectly facilitate infectious disease outbreaks. Subsequently, changes in habitat, displaced populations, and environmental stresses that affect the survival of species are amplified over time. The recurrence and spread of vector-borne (e.g., mosquito, tick, aphid) human, animal, and plant pathogens to new geographic locations are also influenced by climate change. The distribution and range of humans, agricultural animals and plants, wildlife and native plants, as well as vectors, parasites, and microbes that cause neglected diseases of the tropics as well as other global regions are also impacted. In addition, genomic sequencing can now be applied to detect signatures of infectious pathogens as they move into new regions. Molecular detection assays complement metagenomic sequencing to help us understand the microbial community found within the microbiomes of hosts and vectors, and help us uncover mechanistic relationships between climate variability and pathogen transmission. Our understanding of, and responses to, such complex dynamics and their impacts can be enhanced through effective, multi-sectoral One Health engagement coupled with applications of both traditional and novel technologies. Concerted efforts are needed to further harness and leverage technology that can identify and track these impacts of climate changes in order to mitigate and adapt to their effects.

Published
2020

27. Coronavirus surveillance in Congo basin wildlife detects RNA of multiple species circulating in bats and rodents

Author

Kumakamba, Charles, primary, Niama, Fabien R., additional, Muyembe, Francisca, additional, Mombouli, Jean-Vivien, additional, Kingebeni, Placide Mbala, additional, Nina, Rock Aime, additional, Lukusa, Ipos Ngay, additional, Bounga, Gerard, additional, N’Kawa, Frida, additional, Nkoua, Cynthia Goma, additional, Losoma, Joseph Atibu, additional, Mulembakani, Prime, additional, Makuwa, Maria, additional, Tamufe, Ubald, additional, Gillis, Amethyst, additional, LeBreton, Matthew, additional, Olson, Sarah H., additional, Cameron, Kenneth, additional, Reed, Patricia, additional, Ondzie, Alain, additional, Tremeau-Bravard, Alex, additional, Smith, Brett R., additional, Pante, Jasmine, additional, Schneider, Bradley S., additional, McIver, David J., additional, Ayukekbong, James A., additional, Hoff, Nicole A., additional, Rimoin, Anne W., additional, Laudisoit, Anne, additional, Monagin, Corina, additional, Goldstein, Tracey, additional, Joly, Damien O., additional, Saylors, Karen, additional, Wolfe, Nathan D., additional, Rubin, Edward M., additional, MPassi, Romain Bagamboula, additional, Tamfum, Jean J. Muyembe, additional, and Lange, Christian E., additional

Published
2020
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29. Bridging the gap: Using reservoir ecology and human serosurveys to estimate Lassa virus spillover in West Africa

Author

Basinski, Andrew J., primary, Fichet-Calvet, Elisabeth, additional, Sjodin, Anna R., additional, Varrelman, Tanner J., additional, Remien, Christopher H., additional, Layman, Nathan C., additional, Bird, Brian H., additional, Wolking, David J., additional, Monagin, Corina, additional, Ghersi, Bruno M., additional, Barry, Peter A., additional, Jarvis, Michael A., additional, Gessler, Paul E., additional, and Nuismer, Scott L., additional

Published
2020
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30. DNA indicative of human bocaviruses detected in non-human primates in the Democratic Republic of the Congo

Author

Kumakamba, Charles, primary, Ngay Lukusa, Ipos, additional, Mbala Kingebeni, Placide, additional, N’Kawa, Frida, additional, Atibu Losoma, Joseph, additional, Mulembakani, Prime M., additional, Makuwa, Maria, additional, Muyembe Tamfum, Jean-Jacques, additional, Belais, Raphaël, additional, Gillis, Amethyst, additional, Harris, Stephen, additional, Rimoin, Anne W., additional, Hoff, Nicole A., additional, Fair, Joseph N., additional, Monagin, Corina, additional, Ayukekbong, James, additional, Rubin, Edward M., additional, Wolfe, Nathan D., additional, and Lange, Christian E., additional

Published
2018
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33. High Herpesvirus Diversity in Wild Rodent and Shrew Species in Central Africa

Author

Ntumvi, Nkom Felix, primary, Mbala Kingebeni, Placide, additional, Tamoufe, Ubald, additional, Kumakamba, Charles, additional, Ndze, Valentine, additional, Ngay Lukusa, Ipos, additional, LeBreton, Matthew, additional, Atibu Losoma, Joseph, additional, Le Doux Diffo, Joseph, additional, N’Kawa, Frida, additional, Takuo, Jean-Michel, additional, Mulembakani, Prime, additional, Nwobegahay, Julius, additional, Makuwa, Maria, additional, Muyembe Tamfum, Jean J., additional, Gillis, Amethyst, additional, Harris, Stephen, additional, Rimoin, Anne W., additional, Hoff, Nicole A., additional, Fair, Joseph M., additional, Monagin, Corina, additional, Ayukekbong, James, additional, Rubin, Edward M., additional, Wolfe, Nathan D., additional, and Lange, Christian E., additional

Published
2018
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35. Detection and identification of coxsackievirus B3 from sera of an Indonesian patient with undifferentiated febrile illness

Author

Wiyatno, Ageng, primary, Antonjaya, Ungke, additional, Ma'roef, Chairin Nisa, additional, Riswari, Silvita Fitri, additional, Djauhari, Hofiya, additional, Artika, I Made, additional, Monagin, Corina, additional, Schneider, Bradley S., additional, Myint, Khin Saw, additional, Alisjahbana, Bachti, additional, Safari, Dodi, additional, and Kosasih, Herman, additional

Published
2016
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36. Phylogenetic and molecular characterization of coxsackievirus A24 variant isolates from a 2010 acute hemorrhagic conjunctivitis outbreak in Guangdong, China

Author

Monagin Corina, Zeng Hanri, Ke Changwen, Liu Leng, Mo Yanling, Wu De, Li Hui, Zhang Huan, Hiromu Yoshida, Zheng Huanying, Guo Xue, Zhou Huiqiong, Long Caiyun, Kou Jing, and Fang Ling

Subjects
Adult, Male, China, medicine.medical_specialty, Adolescent, Genotype, Guangdong, Molecular Sequence Data, Coxsackievirus Infections, Biology, medicine.disease_cause, Virus, Disease Outbreaks, lcsh:Infectious and parasitic diseases, Young Adult, CA24v, Virology, Epidemiology, Genetic variation, medicine, Cluster Analysis, Humans, lcsh:RC109-216, Child, Phylogeny, Aged, Enterovirus, Aged, 80 and over, Phylogenetic analysis, Molecular epidemiology, Research, Infant, Newborn, Acute hemorrhagic conjunctivitis, Genetic Variation, Infant, Outbreak, Sequence Analysis, DNA, Middle Aged, medicine.disease, Infectious Diseases, Child, Preschool, AHC, RNA, Viral, Female, Conjunctivitis, Acute Hemorrhagic
Abstract

Background Acute hemorrhagic conjunctivitis is a common disease in China. As a notifiable disease, cases are registered by ophthalmologists on the AHC surveillance system. An AHC outbreak caused by CA24v was observed in Guangdong Province in 2007 by the National Disease Supervision Information Management System. Three years later, a larger outbreak occurred in Guangdong during the August-October period (2010). To characterize the outbreak and compare the genetic diversity of CA24v, which was determined to be the cause of the outbreak, the epidemiology and the molecular characterization of CA24v were analyzed in this study. Results A total of 69,635 cases were reported in the outbreak. 73.5% of index cases originated from students, children in kindergarten and factory workers, with the ≦ 9 age group at the highest risk. The male to female ratio was 1.84:1 among 0-19 years. 56 conjunctival swabs were collected to identify the causative agent from five cities with the AHC outbreak. 30 virus strains were isolated, and two of the genomes had the highest identity values (95.8%) with CA24v genomes. Four CA24v genotypes were identified by phylogenetic analysis for the VP1 and 3C regions. CA24v which caused the outbreak belonged to genotype IV. Furthermore, full nucleotide sequences for four representative isolates in 2010 and 2007 were determined and compared. 20 aa mutations, two nt insertions and one nt deletion were observed in the open reading frame, with 5'- and 3'- UTR respectively between them. Conclusions CA24v was determined to be the pathogen causing the outbreak and belongs to genotype IV. VP1 is more informative than 3CPro for describing molecular epidemiology and we hypothesize that accumulative mutations may have promoted the outbreak.

Published
2012

38. Mild Influenza A/H7N9 Infection Among Children in Guangdong Province

Author

Zeng, Xianqiao, primary, Mai, Wei, additional, Shu, Bo, additional, Yi, Lina, additional, Lu, Jing, additional, Song, Tie, additional, Zhong, Haojie, additional, Xiao, Hong, additional, Guan, Dawei, additional, Wu, Jie, additional, Liang, Lijun, additional, Monagin, Corina, additional, Zhang, Xin, additional, and Ke, Changwen, additional

Published
2015
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39. Continuing Reassortment Leads to the Genetic Diversity of Influenza Virus H7N9 in Guangdong, China

Author

Lu, Jing, primary, Wu, Jie, additional, Zeng, Xianqiao, additional, Guan, Dawei, additional, Zou, Lirong, additional, Yi, Lina, additional, Liang, Lijun, additional, Ni, Hanzhong, additional, Kang, Min, additional, Zhang, Xin, additional, Zhong, Haojie, additional, He, Xiang, additional, Monagin, Corina, additional, Lin, Jinyan, additional, and Ke, Changwen, additional

Published
2014
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42. Chikungunya virus with E1-A226V mutation causing two outbreaks in 2010, Guangdong, China

Author

Wu, De, primary, Zhang, Yonghui, additional, ZhouHui, Qiong, additional, Kou, Jing, additional, Liang, Wenjia, additional, Zhang, Huan, additional, Monagin, Corina, additional, Zhang, Qiaoli, additional, Li, Wenjie, additional, Zhong, Haojie, additional, He, Jianfeng, additional, Li, Hui, additional, Cai, Songwu, additional, Ke, Changwen, additional, and Lin, Jinyan, additional

Published
2013
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44. BOOK REVIEWS

Author

MONAGIN, Corina, primary, NAGY, Stephen Robert, additional, NAKANO, Lynne, additional, NG, Benjamin W.M., additional, CREASER, Fiona, additional, COLLINS, Samuel Gerald, additional, MARTIN, Jeff, additional, Ching Angela, WONG Wai, additional, Gang, CHEN, additional, MATHEWS, Gordon, additional, Jing, SHAO, additional, HANSEN, Mette Halskov, additional, Keping, WU, additional, Danning, Wang, additional, BAER, A., additional, Ying, DUAN, additional, GRUß, Inga, additional, MATSUKAWA, Kyoko, additional, and VICENTE, Victor A., additional

Published
2011
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46. Evidence for Retrovirus and Paramyxovirus Infection of Multiple Bat Species in China.

Author

Lihong Yuan, Min Li, Linmiao Li, Monagin, Corina, Chmura, Aleksei A., Schneider, Bradley S., Epstein, Jonathan H., Xiaolin Mei, Zhengli Shi, Daszak, Peter, and Jinping Chen

Subjects
RETROVIRUS diseases, PARAMYXOVIRUSES, PATHOGENIC microorganisms, PUBLIC health, ENTOMOPHAGOUS insects, BATS
Abstract

Bats are recognized reservoirs for many emerging zoonotic viruses of public health importance. Identifying and cataloguing the viruses of bats is a logical approach to evaluate the range of potential zoonoses of bat origin. We characterized the fecal pathogen microbiome of both insectivorous and frugivorous bats, incorporating 281 individual bats comprising 20 common species, which were sampled in three locations of Yunnan province, by combining reverse transcription polymerase chain reaction (RT-PCR) assays and next-generation sequencing. Seven individual bats were paramyxovirus-positive by RT-PCR using degenerate primers, and these paramyxoviruses were mainly classified into three genera (Rubulavirus, Henipavirus and Jeilongvirus). Various additional novel pathogens were detected in the paramyxovirus-positive bats using Illumina sequencing. A total of 7066 assembled contigs (⩾200 bp) were constructed, and 105 contigs matched eukaryotic viruses (of them 103 belong to 2 vertebrate virus families, 1 insect virus, and 1 mycovirus), 17 were parasites, and 4913 were homologous to prokaryotic microorganisms. Among the 103 vertebrate viral contigs, 79 displayed low identity (<70%) to known viruses including human viruses at the amino acid level, suggesting that these belong to novel and genetically divergent viruses. Overall, the most frequently identified viruses, particularly in bats from the family Hipposideridae, were retroviruses. The present study expands our understanding of the bat virome in species commonly found in Yunnan, China, and provides insight into the overall diversity of viruses that may be capable of directly or indirectly crossing over into humans. [ABSTRACT FROM AUTHOR]

Published
2014
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49. Troubled Natures: Waste, Environment, Japan.

Author

MONAGIN, Corina

Subjects
*NONFICTION
Abstract

A review of the book "Troubled Natures: Waste, Environment, Japan," by Peter Wynn Kirby is presented.

Published
2011

50. Continuing Reassortment Leads to the Genetic Diversity of Influenza Virus H7N9 in Guangdong, China.

Author

Jing Lu, Jie Wu, Xianqiao Zeng, Dawei Guan, Lirong Zou, Lina Yi, Lijun Liang, Hanzhong Ni, Min Kang, Xin Zhang, Haojie Zhong, Xiang He, Monagin, Corina, Jinyan Lin, and Changwen Ke

Subjects
*H7N9 Influenza, *INFLUENZA viruses, *PHYLOGENY, *NEURAMINIDASE, *NUCLEOTIDE sequence, *GENETICS
Abstract

On 30 March 2013, a novel avian influenza A H7N9 virus causing severe human respiratory infections was identified in China. Preliminary sequence analyses have shown that the virus is a reassortant of H7N9 and H9N2 avian influenza viruses. In this study, we conducted enhanced surveillance for H7N9 virus in Guangdong, China, from April to August 2013. We isolated two H7N9 viral strains from environmental samples associated with poultry markets and one from a clinical patient. Sequence analyses showed that the Guangdong H7N9 virus isolated from April to May shared high sequence similarity with other strains from eastern China. The A/Guangdong/1/2013 (H7N9) virus isolated from the Guangdong patient on 10 August 2013 was divergent from previously sequenced H7N9 viruses and more closely related to local circulating H9N2 viruses in the NS and NP genes. Phylogenetic analyses revealed that four internal genes of the A/Guangdong/1/2013 (H7N9) virus--the NS, NP, PB1, and PB2 genes--were in clusters different from those for H7N9 viruses identified previously in other provinces of China. The discovery presented here suggests that continuing reassortment led to the emergence of the A/Guangdong/1/2013 (H7N9) virus as a novel H7N9 virus in Guangdong, China, and that viral adaptation to avian and human hosts must be assessed. [ABSTRACT FROM AUTHOR]

Published
2014
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