24 results on '"Mizuguchi C"'
Search Results
2. Phosphatidylethanolamine accelerates aggregation of the amyloidogenic N-terminal fragment of apoA-I.
- Author
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Kurimitsu N, Mizuguchi C, Fujita K, Taguchi S, Ohgita T, Nishitsuji K, Shimanouchi T, and Saito H
- Subjects
- Amyloid metabolism, Apolipoprotein A-I genetics, Calorimetry, Cell Membrane chemistry, Cell Membrane metabolism, Circular Dichroism, Peptide Fragments metabolism, Phosphatidylethanolamines chemistry, Protein Structure, Secondary, Spectrometry, Fluorescence, Sphingomyelins metabolism, Thermodynamics, Apolipoprotein A-I chemistry, Apolipoprotein A-I metabolism, Phosphatidylethanolamines metabolism
- Abstract
Membrane lipid composition is known to influence aggregation and fibril formation of many amyloidogenic proteins. Here, we found that phosphatidylethanolamine (PE) accelerates aggregation of the N-terminal 1-83 fragment of an amyloidogenic G26R variant of apoA-I on lipid membranes. Circular dichroism and isothermal titration calorimetry measurements demonstrated that PE does not affect the α-helical structure and lipid binding property of apoA-I 1-83/G26R. Rather, fluorescence measurements indicated that PE induces more ordered lipid packing at the interfacial and acyl chain regions, providing more hydrophobic environments especially around the highly amyloidogenic regions in apoA-I on the membrane surface. These results suggest that PE promotes aggregation of the amyloidogenic N-terminal fragment of apoA-I on lipid membranes by inducing hydrophobic membrane environments., (© 2020 Federation of European Biochemical Societies.)
- Published
- 2020
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3. Mechanisms of aggregation and fibril formation of the amyloidogenic N-terminal fragment of apolipoprotein A-I.
- Author
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Mizuguchi C, Nakagawa M, Namba N, Sakai M, Kurimitsu N, Suzuki A, Fujita K, Horiuchi S, Baba T, Ohgita T, Nishitsuji K, and Saito H
- Subjects
- Amyloid metabolism, Apolipoprotein A-I metabolism, Cell Survival, HEK293 Cells, Humans, Protein Aggregates, Recombinant Proteins chemistry, Recombinant Proteins metabolism, Thermodynamics, Unilamellar Liposomes chemical synthesis, Unilamellar Liposomes chemistry, Amyloid chemistry, Apolipoprotein A-I chemistry
- Abstract
The N-terminal (1-83) fragment of the major constituent of plasma high-density lipoprotein, apolipoprotein A-I (apoA-I), strongly tends to form amyloid fibrils, leading to systemic amyloidosis. Here, using a series of deletion variants, we examined the roles of two major amyloidogenic segments (residues 14-22 and 50-58) in the aggregation and fibril formation of an amyloidogenic G26R variant of the apoA-I 1-83 fragment (apoA-I 1-83/G26R). Thioflavin T fluorescence assays and atomic force microscopy revealed that elimination of residues 14-22 completely inhibits fibril formation of apoA-I 1-83/G26R, whereas Δ32-40 and Δ50-58 variants formed fibrils with markedly reduced nucleation and fibril growth rates. CD measurements revealed structural transitions from random coil to β-sheet structures in all deletion variants except for the Δ14-22 variant, indicating that residues 14-22 are critical for the β-transition and fibril formation. Thermodynamic analysis of the kinetics of fibril formation by apoA-I 1-83/G26R indicated that both nucleation and fibril growth are enthalpically unfavorable, whereas entropically, nucleation is favorable, but fibril growth is unfavorable. Interestingly, the nucleation of the Δ50-58 variant was entropically unfavorable, indicating that residues 50-58 entropically promote the nucleation step in fibril formation of apoA-I 1-83/G26R. Moreover, a residue-level structural investigation of apoA-I 1-83/G26R fibrils with site-specific pyrene labeling indicated that the two amyloidogenic segments are in close proximity to form an amyloid core structure, whereas the N- and C-terminal tail regions are excluded from the amyloid core. These results provide critical insights into the aggregation mechanism and fibril structure of the amyloidogenic N-terminal fragment of apoA-I., (© 2019 Mizuguchi et al.)
- Published
- 2019
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4. Lipid Bilayer Interactions of Amyloidogenic N-Terminal Fragment of Apolipoprotein A-I Probed by Förster Resonance Energy Transfer and Molecular Dynamics Simulations.
- Author
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Gorbenko GP, Trusova V, Mizuguchi C, and Saito H
- Subjects
- Apolipoprotein A-I genetics, Fluorescent Dyes chemistry, Humans, Mutation, Apolipoprotein A-I chemistry, Fluorescence Resonance Energy Transfer, Lipid Bilayers chemistry, Molecular Dynamics Simulation, Peptide Fragments chemistry
- Abstract
The effects of one of the amyloidogenic mutations of apolipoprotein A-I (apoA-I), G26R, on the thermal stability, structural dynamics and lipid-associating properties of the 1-83 N-terminal fragment of apoA-I (A83) have been investigated using the Förster resonance energy transfer (FRET) and molecular dynamics (MD) simulation. The measurements of FRET between the tryptophan residues of the single Trp variants of A83 as donors and the membrane-incorporated fluorescent probe 4-dimethylaminochalcone as an acceptor provided evidence for a less depth of A83/G26R penetration into phosphatidylcholine (PC) bilayer compared to WT counterpart. The unfolding MD simulations showed that G26R mutation destabilizes the overall structure of A83, with individual alpha-helices differing in their thermal stability. The MD simulations performed at physiological temperature revealed that A83 and A83/G26R differ in their conformational behavior in an aqueous solution, PC and PC/Cholesterol bilayers. These findings may prove of importance for deeper understanding of the key determinants of apoA-I amyloidogenesis.
- Published
- 2018
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5. Effect of Phosphatidylserine and Cholesterol on Membrane-mediated Fibril Formation by the N-terminal Amyloidogenic Fragment of Apolipoprotein A-I.
- Author
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Mizuguchi C, Nakamura M, Kurimitsu N, Ohgita T, Nishitsuji K, Baba T, Shigenaga A, Shimanouchi T, Okuhira K, Otaka A, and Saito H
- Subjects
- Amyloid chemistry, Apolipoprotein A-I chemistry, Apolipoprotein A-I metabolism, Cholesterol pharmacology, Phosphatidylserines pharmacology, Unilamellar Liposomes chemistry, Unilamellar Liposomes metabolism
- Abstract
Here, we examined the effects of phosphatidylserine (PS) and cholesterol on the fibril-forming properties of the N-terminal 1‒83 fragment of an amyloidogenic G26R variant of apoA-I bound to small unilamellar vesicles. A thioflavin T fluorescence assay together with microscopic observations showed that PS significantly retards the nucleation step in fibril formation by apoA-I 1‒83/G26R, whereas cholesterol slightly enhances fibril formation. Circular dichroism analyses demonstrated that PS facilitates a structural transition from random coil to α-helix in apoA-I 1‒83/G26R with great stabilization of the α-helical structure upon lipid binding. Isothermal titration calorimetry measurements revealed that PS induces a marked increase in capacity for binding of apoA-I 1‒83/G26R to the membrane surface, perhaps due to electrostatic interactions of positively charged amino acids in apoA-I with PS. Such effects of PS to enhance lipid interactions and inhibit fibril formation of apoA-I were also observed for the amyloidogenic region-containing apoA-I 8‒33/G26R peptide. Fluorescence measurements using environment-sensitive probes indicated that PS induces a more solvent-exposed, membrane-bound conformation in the amyloidogenic region of apoA-I without affecting membrane fluidity. Since cell membranes have highly heterogeneous lipid compositions, our findings may provide a molecular basis for the preferential deposition of apoA-I amyloid fibrils in tissues and organs.
- Published
- 2018
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6. Immunochemical Approach for Monitoring of Structural Transition of ApoA-I upon HDL Formation Using Novel Monoclonal Antibodies.
- Author
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Kimura H, Mikawa S, Mizuguchi C, Horie Y, Morita I, Oyama H, Ohgita T, Nishitsuji K, Takeuchi A, Lund-Katz S, Akaji K, Kobayashi N, and Saito H
- Subjects
- Animals, Antibodies, Monoclonal isolation & purification, Humans, Mice, Inbred BALB C, Protein Binding, Protein Conformation, Antibodies, Monoclonal metabolism, Apolipoprotein A-I chemistry, Apolipoprotein A-I metabolism, Lipoproteins, HDL metabolism
- Abstract
Apolipoprotein A-I (apoA-I) undergoes a large conformational reorganization during remodeling of high-density lipoprotein (HDL) particles. To detect structural transition of apoA-I upon HDL formation, we developed novel monoclonal antibodies (mAbs). Splenocytes from BALB/c mice immunized with a recombinant human apoA-I, with or without conjugation with keyhole limpet hemocyanin, were fused with P3/NS1/1-Ag4-1 myeloma cells. After the HAT-selection and cloning, we established nine hybridoma clones secreting anti-apoA-I mAbs in which four mAbs recognize epitopes on the N-terminal half of apoA-I while the other five mAbs recognize the central region. ELISA and bio-layer interferometry measurements demonstrated that mAbs whose epitopes are within residues 1-43 or 44-65 obviously discriminate discoidal and spherical reconstituted HDL particles despite their great reactivities to lipid-free apoA-I and plasma HDL, suggesting the possibility of these mAbs to detect structural transition of apoA-I on HDL. Importantly, a helix-disrupting mutation of W50R into residues 44-65 restored the immunoreactivity of mAbs whose epitope being within residues 44-65 against reconstituted HDL particles, indicating that these mAbs specifically recognize the epitope region in a random coil state. These results encourage us to develop mAbs targeting epitopes in the N-terminal residues of apoA-I as useful probes for monitoring formation and remodeling of HDL particles.
- Published
- 2017
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7. Conformational plasticity of JRAB/MICAL-L2 provides "law and order" in collective cell migration.
- Author
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Sakane A, Yoshizawa S, Nishimura M, Tsuchiya Y, Matsushita N, Miyake K, Horikawa K, Imoto I, Mizuguchi C, Saito H, Ueno T, Matsushita S, Haga H, Deguchi S, Mizuguchi K, Yokota H, and Sasaki T
- Subjects
- Actinin metabolism, Animals, Cell Movement physiology, Computational Biology, Dogs, Epithelial Cells metabolism, Focal Adhesions metabolism, Focal Adhesions physiology, HEK293 Cells, Humans, Madin Darby Canine Kidney Cells, Optical Imaging, Protein Binding, Protein Structure, Tertiary, Protein Transport, Tight Junctions metabolism, rab GTP-Binding Proteins metabolism, Microfilament Proteins metabolism, Microfilament Proteins physiology
- Abstract
In fundamental biological processes, cells often move in groups, a process termed collective cell migration. Collectively migrating cells are much better organized than a random assemblage of individual cells. Many molecules have been identified as factors involved in collective cell migration, and no one molecule is adequate to explain the whole picture. Here we show that JRAB/MICAL-L2, an effector protein of Rab13 GTPase, provides the "law and order" allowing myriad cells to behave as a single unit just by changing its conformation. First, we generated a structural model of JRAB/MICAL-L2 by a combination of bioinformatic and biochemical analyses and showed how JRAB/MICAL-L2 interacts with Rab13 and how its conformational change occurs. We combined cell biology, live imaging, computational biology, and biomechanics to show that impairment of conformational plasticity in JRAB/MICAL-L2 causes excessive rigidity and loss of directionality, leading to imbalance in cell group behavior. This multidisciplinary approach supports the concept that the conformational plasticity of a single molecule provides "law and order" in collective cell migration., (© 2016 Sakane et al. This article is distributed by The American Society for Cell Biology under license from the author(s). Two months after publication it is available to the public under an Attribution–Noncommercial–Share Alike 3.0 Unported Creative Commons License (http://creativecommons.org/licenses/by-nc-sa/3.0).)
- Published
- 2016
- Full Text
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8. Heparin promotes fibril formation by the N-terminal fragment of amyloidogenic apolipoprotein A-I.
- Author
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Mikawa S, Mizuguchi C, Nishitsuji K, Baba T, Shigenaga A, Shimanouchi T, Sakashita N, Otaka A, Akaji K, and Saito H
- Subjects
- Apolipoprotein A-I chemistry, Apolipoprotein A-I metabolism, Circular Dichroism, Humans, Microscopy, Electron, Transmission, Mutation, Peptide Fragments metabolism, Protein Stability, Protein Structure, Secondary, Structure-Activity Relationship, Amyloid metabolism, Apolipoprotein A-I genetics, Heparin metabolism, Peptide Fragments chemistry
- Abstract
Glycosaminoglycans are known to be associated with extracellular amyloid deposits of various amyloidogenic proteins. In this study, we found that the glycosaminoglycan heparin greatly accelerates the elongation step in fibril formation by the N-terminal 1-83 fragment of human apolipoprotein A-I (apoA-I), especially in the amyloidogenic W50R variant. Using fragment peptides, we demonstrate that heparin significantly promotes β-transition and fibril formation of the highly amyloidogenic region spanning residues 44-65 and colocalizes with fibrils formed by the W50R variant. These results suggest the possible role of glycosaminoglycans in fibril formation by amyloidogenic apoA-I variants., (© 2016 Federation of European Biochemical Societies.)
- Published
- 2016
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9. Combined thioflavin T-Congo red fluorescence assay for amyloid fibril detection.
- Author
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Girych M, Gorbenko G, Maliyov I, Trusova V, Mizuguchi C, Saito H, and Kinnunen P
- Subjects
- Amyloid, Benzothiazoles, Fluorescence, Fluorescent Dyes, Kinetics, Protein Binding, Reproducibility of Results, Congo Red chemistry, Thiazoles chemistry
- Abstract
Fluorescence represents one of the most powerful tools for the detection and structural characterization of the pathogenic protein aggregates, amyloid fibrils. The traditional approaches to the identification and quantification of amyloid fibrils are based on monitoring the fluorescence changes of the benzothiazole dye thioflavin T (ThT) and absorbance changes of the azo dye Congo red (CR). In routine screening it is usually sufficient to perform only the ThT and CR assays, but both of them, when used separately, could give false results. Moreover, fibrillization kinetics can be measured only by ThT fluorescence, while the characteristic absorption spectra and birefringence of CR represent more rigid criteria for the presence of amyloid fibrils. Therefore, it seemed reasonable to use both these dyes simultaneously, combining the advantages of each technique. To this end, we undertook a detailed analysis of the fluorescence spectral behavior of these unique amyloid tracers upon their binding to amyloid fibrils from lysozyme, insulin and an N-terminal fragment of apolipoprotein A-I with Iowa mutation. The fluorescence measurements revealed several criteria for distinguishing between fibrillar and monomeric protein states: (i) a common drastic increase in ThT fluorescence intensity; (ii) a sharp decrease in ThT fluorescence upon addition of CR; (iii) an appearance of the maximum at 535-540 nm in the CR excitation spectra; (iv) increase in CR fluorescence intensity at 610 nm. Based on these findings we designed a novel combined ThT-CR fluorescence assay for amyloid identification. Such an approach not only strengthens the reliability of the ThT assay, but also provides new opportunities for structural characterization of amyloid fibrils.
- Published
- 2016
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10. FRET evidence for untwisting of amyloid fibrils on the surface of model membranes.
- Author
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Gorbenko G, Trusova V, Girych M, Adachi E, Mizuguchi C, Akaji K, and Saito H
- Subjects
- Amyloid metabolism, Apolipoprotein A-I metabolism, Cell Membrane chemistry, Cell Membrane metabolism, Fluorescence Resonance Energy Transfer, Humans, Membranes, Artificial, Amyloid chemistry, Apolipoprotein A-I chemistry
- Abstract
Apolipoprotein A-I (apoA-I) is an amyloid-forming protein whose amyloidogenic properties are attributed mainly to its N-terminal fragment. Cell membranes are thought to be the primary target for the toxic amyloid aggregates. In the present study Förster resonance energy transfer (FRET) between the membrane fluorescent probe Laurdan as a donor and amyloid-specific dye Thioflavin T (ThT) as an acceptor was employed to explore the interactions of amyloid fibrils from apoA-I variants 1-83/G26R and 1-83/G26R/W@8 with the model membranes composed of phosphatidylcholine and its mixture with cholesterol. The changes in FRET efficiency upon fibril-lipid binding were found to correlate with the extent of protein fibrillization. AFM imaging revealed the presence of two polymorphic states of fibrillar 1-83/G26R/W@8 with the helical and twisted ribbon morphologies. The simulation-based analysis of the experimental FRET profiles provided the arguments in favor of untwisting of fibrillar assemblies upon their interaction with the model membranes. Evidence for the face-on orientation and superficial bilayer location of the membrane-bound fragments of 1-83/G26R/W@8 fibrils was obtained.
- Published
- 2015
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11. Amyloidogenic Mutation Promotes Fibril Formation of the N-terminal Apolipoprotein A-I on Lipid Membranes.
- Author
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Mizuguchi C, Ogata F, Mikawa S, Tsuji K, Baba T, Shigenaga A, Shimanouchi T, Okuhira K, Otaka A, and Saito H
- Subjects
- Amyloid chemistry, Amyloid genetics, Apolipoprotein A-I genetics, Benzothiazoles, Escherichia coli genetics, Escherichia coli metabolism, Fluorescent Dyes, Gene Expression, Humans, Protein Binding, Protein Engineering, Protein Structure, Secondary, Protein Structure, Tertiary, Recombinant Fusion Proteins genetics, Structure-Activity Relationship, Thiazoles, Trifluoroethanol chemistry, Unilamellar Liposomes chemistry, Apolipoprotein A-I chemistry, Mutation, Phosphatidylcholines chemistry, Recombinant Fusion Proteins chemistry
- Abstract
The N-terminal amino acid 1-83 fragment of apolipoprotein A-I (apoA-I) has a strong propensity to form amyloid fibrils at physiological neutral pH. Because apoA-I has an ability to bind to lipid membranes, we examined the effects of the lipid environment on fibril-forming properties of the N-terminal fragment of apoA-I variants. Thioflavin T fluorescence assay as well as fluorescence and transmission microscopies revealed that upon lipid binding, fibril formation by apoA-I 1-83 is strongly inhibited, whereas the G26R mutant still retains the ability to form fibrils. Such distinct effects of lipid binding on fibril formation were also observed for the amyloidogenic prone region-containing peptides, apoA-I 8-33 and 8-33/G26R. This amyloidogenic region shifts from random coil to α-helical structure upon lipid binding. The G26R mutation appears to prevent this helix transition because lower helical propensity and more solvent-exposed conformation of the G26R variant upon lipid binding were observed in the apoA-I 1-83 fragment and 8-33 peptide. With a partially α-helical conformation induced by the presence of 2,2,2-trifluoroethanol, fibril formation by apoA-I 1-83 was strongly inhibited, whereas the G26R variant can form amyloid fibrils. These findings suggest a new possible pathway for amyloid fibril formation by the N-terminal fragment of apoA-I variants: the amyloidogenic mutations partially destabilize the α-helical structure formed upon association with lipid membranes, resulting in physiologically relevant conformations that allow fibril formation., (© 2015 by The American Society for Biochemistry and Molecular Biology, Inc.)
- Published
- 2015
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12. Membrane effects of N-terminal fragment of apolipoprotein A-I: a fluorescent probe study.
- Author
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Trusova V, Gorbenko G, Girych M, Adachi E, Mizuguchi C, Sood R, Kinnunen P, and Saito H
- Subjects
- 2-Naphthylamine analogs & derivatives, 2-Naphthylamine chemistry, Amino Acid Sequence, Amyloid chemistry, Cholesterol chemistry, Humans, Laurates chemistry, Lipid Bilayers chemistry, Lipid Bilayers metabolism, Molecular Sequence Data, Mutation, Peptide Fragments genetics, Phosphatidylcholines chemistry, Protein Multimerization, Pyrenes chemistry, Apolipoprotein A-I chemistry, Cell Membrane chemistry, Cell Membrane metabolism, Fluorescent Dyes chemistry, Peptide Fragments chemistry, Peptide Fragments metabolism
- Abstract
The binding of monomeric and aggregated variants of 1-83 N-terminal fragment of apolipoprotein A-I with substitution mutations G26R, G26R/W@8, G26R/W@50 and G26R/W@72 to the model lipid membranes composed of phosphatidylcholine and its mixture with cholesterol has been investigated using fluorescent probes pyrene and Laurdan. Examination of pyrene spectral behavior did not reveal any marked influence of apoA-I mutants on the hydrocarbon region of lipid bilayer. In contrast, probing the membrane effects by Laurdan revealed decrease in the probe generalized polarization in the presence of aggregated proteins. suggesting that oligomeric and fibrillar apoA-I species induce increase in hydration degree and reduction of lipid packing density in the membrane interfacial region. These findings may shed light on molecular details of amyloid cytotoxicity.
- Published
- 2015
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13. Interactions of Lipid Membranes with Fibrillar Protein Aggregates.
- Author
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Gorbenko G, Trusova V, Girych M, Adachi E, Mizuguchi C, and Saito H
- Subjects
- Animals, Binding, Competitive, Humans, Amyloid metabolism, Lipid Bilayers metabolism
- Abstract
Amyloid fibrils are an intriguing class of protein aggregates with distinct physicochemical, structural and morphological properties. They display peculiar membrane-binding behavior, thus adding complexity to the problem of protein-lipid interactions. The consensus that emerged during the past decade is that amyloid cytotoxicity arises from a continuum of cross-β-sheet assemblies including mature fibrils. Based on literature survey and our own data, in this chapter we address several aspects of fibril-lipid interactions, including (i) the effects of amyloid assemblies on molecular organization of lipid bilayer; (ii) competition between fibrillar and monomeric membrane-associating proteins for binding to the lipid surface; and (iii) the effects of lipids on the structural morphology of fibrillar aggregates. To illustrate some of the processes occurring in fibril-lipid systems, we present and analyze fluorescence data reporting on lipid bilayer interactions with fibrillar lysozyme and with the N-terminal 83-residue fragment of amyloidogenic mutant apolipoprotein A-I, 1-83/G26R/W@8. The results help understand possible mechanisms of interaction and mutual remodeling of amyloid fibers and lipid membranes, which may contribute to amyloid cytotoxicity.
- Published
- 2015
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14. Fluorescence study of domain structure and lipid interaction of human apolipoproteins E3 and E4.
- Author
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Mizuguchi C, Hata M, Dhanasekaran P, Nickel M, Okuhira K, Phillips MC, Lund-Katz S, and Saito H
- Subjects
- 2-Naphthylamine analogs & derivatives, 2-Naphthylamine metabolism, Animals, Chickens, Fluorescence Resonance Energy Transfer, Guanidine pharmacology, Humans, Kinetics, Phosphatidylcholines metabolism, Protein Denaturation drug effects, Protein Isoforms chemistry, Protein Isoforms metabolism, Protein Stability, Protein Structure, Tertiary, Pyrenes metabolism, Time Factors, Tryptophan metabolism, Unilamellar Liposomes metabolism, Apolipoprotein E3 chemistry, Apolipoprotein E3 metabolism, Apolipoprotein E4 chemistry, Apolipoprotein E4 metabolism, Lipids chemistry
- Abstract
Human apolipoprotein E (apoE) isoforms exhibit different conformational stabilities and lipid-binding properties that give rise to altered cholesterol metabolism among the isoforms. Using Trp-substituted mutations and site- directed fluorescence labeling, we made a comprehensive comparison of the conformational organization of the N- and C-terminal domains and lipid interactions between the apoE3 and apoE4 isoforms. Trp fluorescence measurements for selectively Trp-substituted variants of apoE isoforms demonstrated that apoE4 adopts less stable conformations in both the N- and C-terminal domains compared to apoE3. Consistent with this, the conformational reorganization of the N-terminal helix bundle occurs at lower guanidine hydrochloride concentration in apoE4 than in apoE3 as monitored by fluorescence resonance energy transfer (FRET) from Trp residues to acrylodan attached at the N-terminal helix. Upon binding of apoE3 and apoE4 variants to egg phosphatidylcholine small unilamellar vesicles, similar changes in Trp fluorescence or FRET efficiency were observed for the isoforms, indi- cating that the opening of the N-terminal helix bundle occurs similarly in apoE3 and apoE4. Introduction of mutations into the C-terminal domain of the apoE isoforms to prevent self-association and maintain the monomeric state resulted in great increase in the rate of binding of the C-terminal helices to a lipid surface. Overall, our results demonstrate that the different conformational organizations of the N- and C-terminal domains have a minor effect on the steady-state lipid-binding behavior of apoE3 and apoE4: rather, self-association property is a critical determinant in the kinetics of lipid binding through the C-terminal helices of apoE isoforms.
- Published
- 2014
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15. Influence of domain stability on the properties of human apolipoprotein E3 and E4 and mouse apolipoprotein E.
- Author
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Nguyen D, Dhanasekaran P, Nickel M, Mizuguchi C, Watanabe M, Saito H, Phillips MC, and Lund-Katz S
- Subjects
- Animals, Apolipoprotein E4 genetics, Apolipoprotein E4 metabolism, Apolipoproteins E metabolism, Dimyristoylphosphatidylcholine chemistry, Humans, Lipids chemistry, Lipoproteins, VLDL chemistry, Mice, Protein Binding, Protein Isoforms metabolism, Protein Stability, Protein Structure, Tertiary, Triolein chemistry, Apolipoprotein E3 chemistry, Apolipoprotein E4 chemistry, Apolipoproteins E chemistry
- Abstract
The human apolipoprotein (apo) E4 isoform, which differs from wild-type apoE3 by the single amino acid substitution C112R, is associated with elevated risk of cardiovascular and Alzheimer’s diseases, but the molecular basis for this variation between isoforms is not understood. Human apoE is a two-domain protein comprising an N-terminal helix bundle and a separately folded C-terminal region. Here, we examine the concept that the ability of the protein to bind to lipid surfaces is influenced by the stability (or readiness to unfold) of these domains. The lipid-free structures and abilities to bind to lipid and lipoprotein particles of a series of human and mouse apoE variants with varying domain stabilities and domain–domain interactions are compared. As assessed by urea denaturation, the two domains are more unstable in apoE4 than in apoE3. To distinguish the contributions of the destabilization of each domain to the greater lipid-binding ability of apoE4, the properties of the apoE4 R61T and E255A variants, which have the same helix bundle stabilities but altered C-terminal domain stabilities, are compared. In these cases, the effects on lipid-binding properties are relatively minor, indicating that the destabilization of the helix bundle domain is primarily responsible for the enhanced lipid-binding ability of apoE4. Unlike human apoE, mouse apoE behaves essentially as a single domain, and its lipid-binding characteristics are more similar to those of apoE4. Together, the results show that the overall stability of the entire apoE molecule exerts a major influence on its lipid- and lipoprotein-binding properties.
- Published
- 2014
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16. The extreme N-terminal region of human apolipoprotein A-I has a strong propensity to form amyloid fibrils.
- Author
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Adachi E, Kosaka A, Tsuji K, Mizuguchi C, Kawashima H, Shigenaga A, Nagao K, Akaji K, Otaka A, and Saito H
- Subjects
- Amyloid chemistry, Amyloid genetics, Apolipoprotein A-I chemistry, Circular Dichroism, Humans, Microscopy, Atomic Force, Peptide Fragments chemical synthesis, Peptide Fragments genetics, Point Mutation, Protein Conformation, Protein Structure, Secondary, Spectroscopy, Fourier Transform Infrared, Amyloid biosynthesis, Apolipoprotein A-I biosynthesis, Apolipoprotein A-I genetics, Peptide Fragments chemistry
- Abstract
The N-terminal 1-83 residues of apolipoprotein A-I (apoA-I) have a strong propensity to form amyloid fibrils, in which the 46-59 segment was reported to aggregate to form amyloid-like fibrils. In this study, we demonstrated that a fragment peptide comprising the extreme N-terminal 1-43 residues strongly forms amyloid fibrils with a transition to β-sheet-rich structure, and that the G26R point mutation enhances the fibril formation of this segment. Our results suggest that in addition to the 46-59 segment, the extreme N-terminal region plays a crucial role in the development of amyloid fibrils by the N-terminal fragment of amyloidogenic apoA-I variants., (Copyright © 2013 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved.)
- Published
- 2014
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17. Interaction of thioflavin T with amyloid fibrils of apolipoprotein A-I N-terminal fragment: resonance energy transfer study.
- Author
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Girych M, Gorbenko G, Trusova V, Adachi E, Mizuguchi C, Nagao K, Kawashima H, Akaji K, Lund-Katz S, Phillips MC, and Saito H
- Subjects
- Benzothiazoles, Binding Sites, Energy Transfer, Humans, Protein Binding, Protein Interaction Domains and Motifs, Amyloid chemistry, Apolipoprotein A-I chemistry, Thiazoles chemistry
- Abstract
Apolipoprotein A-I is amenable to a number of specific mutations associated with hereditary systemic amyloidoses. Amyloidogenic properties of apoA-I are determined mainly by its N-terminal fragment. In the present study Förster resonance energy transfer between tryptophan as a donor and Thioflavin T as an acceptor was employed to obtain structural information on the amyloid fibrils formed by apoA-I variant 1-83/G26R/W@8. Analysis of the dye-fibril binding data provided evidence for the presence of two types of ThT binding sites with similar stoichiometries (bound dye to monomeric protein molar ratio ∼10), but different association constants (∼6 and 0.1μM(-1)) and ThT quantum yields in fibril-associated state (0.08 and 0.05, respectively). A β-strand-loop-β-strand structural model of 1-83/G26R/W@8 apoA-I fibrils has been proposed, with potential ThT binding sites located in the solvent-exposed grooves of the N-terminal β-sheet layer. Reasoning from the expanded FRET analysis allowing for heterogeneity of ThT binding centers and fibril polymorphism, the most probable locations of high- and low-affinity ThT binding sites were attributed to the grooves T16_Y18 and D20_L22, respectively., (Copyright © 2013 Elsevier Inc. All rights reserved.)
- Published
- 2014
- Full Text
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18. Interactions of apolipoprotein A-I with high-density lipoprotein particles.
- Author
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Nguyen D, Nickel M, Mizuguchi C, Saito H, Lund-Katz S, and Phillips MC
- Subjects
- Animals, Humans, Hydrophobic and Hydrophilic Interactions, Mice, Models, Molecular, Protein Binding, Protein Structure, Tertiary, Apolipoprotein A-I chemistry, Apolipoprotein A-I metabolism, Lipoproteins, HDL metabolism
- Abstract
Although the partitioning of apolipoprotein A-I (apoA-I) molecules in plasma between high-density lipoprotein (HDL)-bound and -unbound states is an integral part of HDL metabolism, the factors that control binding of apoA-I to HDL particles are poorly understood. To address this gap in knowledge, we investigated how the properties of the apoA-I tertiary structure domains and surface characteristics of spherical HDL particles influence apoA-I binding. The abilities of (14)C-labeled human and mouse apoA-I variants to associate with human HDL and lipid emulsion particles were determined using ultracentrifugation to separate free and bound protein. The binding of human apoA-I (243 amino acids) to HDL is largely mediated by its relatively hydrophobic C-terminal domain; the isolated N-terminal helix bundle domain (residues 1-190) binds poorly. Mouse apoA-I, which has a relatively polar C-terminal domain, binds to human HDL to approximately half the level of human apoA-I. The HDL binding abilities of apoA-I variants correlate strongly with their abilities to associate with phospholipid (PL)-stabilized emulsion particles, consistent with apoA-I-PL interactions at the particle surface being important. When equal amounts of HDL2 and HDL3 are present, all of the apoA-I variants partition preferentially to HDL3. Fluorescence polarization measurements using Laurdan-labeled HDL2 and HDL3 indicate that PL molecular packing is looser on the more negatively charged HDL3 particle surface, which promotes apoA-I binding. Overall, it is clear that both apoA-I structural features, especially the hydrophobicity of the C-terminal domain, and HDL surface characteristics such as the availability of free space influence the ability of apoA-I to associate with HDL particles.
- Published
- 2013
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19. Dual role of an N-terminal amyloidogenic mutation in apolipoprotein A-I: destabilization of helix bundle and enhancement of fibril formation.
- Author
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Adachi E, Nakajima H, Mizuguchi C, Dhanasekaran P, Kawashima H, Nagao K, Akaji K, Lund-Katz S, Phillips MC, and Saito H
- Subjects
- Amyloid metabolism, Amyloidosis, Familial metabolism, Circular Dichroism, HEK293 Cells, Humans, Hydrogen-Ion Concentration, Microscopy, Atomic Force, Point Mutation, Protein Structure, Secondary, Protein Structure, Tertiary, Spectroscopy, Fourier Transform Infrared methods, Thermodynamics, Time Factors, Amyloid chemistry, Amyloidosis, Familial genetics, Apolipoprotein A-I genetics, Mutation
- Abstract
A number of naturally occurring mutations of apolipoprotein (apo) A-I, the major protein of HDL, are known to be associated with hereditary amyloidosis and atherosclerosis. Here, we examined the effects of the G26R point mutation in apoA-I (apoA-I(Iowa)) on the structure, stability, and aggregation propensity to form amyloid fibril of full-length apoA-I and the N-terminal fragment of apoA-I. Circular dichroism and fluorescence measurements demonstrated that the G26R mutation destabilizes the N-terminal helix bundle domain of full-length protein, leading to increased hydrophobic surface exposure, whereas it has no effect on the initial structure of the N-terminal 1-83 fragment, which is predominantly a random coil structure. Upon incubation for extended periods at neutral pH, the N-terminal 1-83 variants undergo a conformational change to β-sheet-rich structure with a great increase in thioflavin T fluorescence, whereas no structural change is observed in full-length proteins. Comparison of fibril-forming propensity among substituted mutants at Gly-26 position of 1-83 fragments demonstrated that the G26R mutation enhances the nucleation step of fibril formation, whereas G26K and G26E mutations have small or inhibiting effects on the formation of fibrils. These fibrils of the 1-83 variants have long and straight morphology as revealed by atomic force microscopy and exhibited significant toxicity with HEK293 cells. Our results indicate dual critical roles of the arginine residue at position 26 in apoA-I(Iowa): destabilization of the N-terminal helix bundle structure in full-length protein and enhancement of amyloid fibril formation by the N-terminal 1-83 fragment.
- Published
- 2013
- Full Text
- View/download PDF
20. Fluorescence analysis of the lipid binding-induced conformational change of apolipoprotein E4.
- Author
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Mizuguchi C, Hata M, Dhanasekaran P, Nickel M, Phillips MC, Lund-Katz S, and Saito H
- Subjects
- 2-Naphthylamine analogs & derivatives, Chromatography, Gel, Fluorescence, Fluorescence Resonance Energy Transfer, Fluorescent Dyes, Guanidines, Humans, Protein Binding, Protein Denaturation, Protein Structure, Secondary, Pyrenes, Unilamellar Liposomes, Apolipoprotein E4 chemistry, Lipoproteins, HDL3 chemistry, Lipoproteins, VLDL chemistry, Phosphatidylcholines chemistry
- Abstract
Apolipoprotein (apo) E is thought to undergo conformational changes in the N-terminal helix bundle domain upon lipid binding, modulating its receptor binding activity. In this study, site-specific fluorescence labeling of the N-terminal (S94) and C-terminal (W264 or S290) helices in apoE4 by pyrene maleimide or acrylodan was employed to probe the conformational organization and lipid binding behavior of the N- and C-terminal domains. Guanidine denaturation experiments monitored by acrylodan fluorescence demonstrated the less organized, more solvent-exposed structure of the C-terminal helices compared to the N-terminal helix bundle. Pyrene excimer fluorescence together with gel filtration chromatography indicated that there are extensive intermolecular helix-helix contacts through the C-terminal helices of apoE4. Comparison of increases in pyrene fluorescence upon binding of pyrene-labeled apoE4 to egg phosphatidylcholine small unilamellar vesicles suggests a two-step lipid-binding process; apoE4 initially binds to a lipid surface through the C-terminal helices followed by the slower conformational reorganization of the N-terminal helix bundle domain. Consistent with this, fluorescence resonance energy transfer measurements from Trp residues to acrylodan attached at position 94 demonstrated that upon binding to the lipid surface, opening of the N-terminal helix bundle occurs at the same rate as the increase in pyrene fluorescence of the N-terminal domain. Such a two-step mechanism of lipid binding of apoE4 is likely to apply to mostly phospholipid-covered lipoproteins such as VLDL. However, monitoring pyrene fluorescence upon binding to HDL(3) suggests that not only apoE-lipid interactions but also protein-protein interactions are important for apoE4 binding to HDL(3).
- Published
- 2012
- Full Text
- View/download PDF
21. Generation and characterization of a monoclonal antibody against importin α7/NPI-2.
- Author
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Mizuguchi C, Moriyama T, and Yoneda Y
- Subjects
- Animals, COS Cells, Cell Line, Tumor, Chlorocebus aethiops, Enzyme-Linked Immunosorbent Assay, Fluorescent Antibody Technique, Immunoblotting, Mice, Rats, Antibodies, Monoclonal biosynthesis, Antibodies, Monoclonal immunology, Hybridomas immunology, alpha Karyopherins immunology
- Abstract
Many nuclear proteins are transported into the nucleus via the importin α/β-mediated pathway. Importin α comprises a multigene family. In this study, we generated and characterized a rat monoclonal antibody (MAb) 3F8 to importin α7. The antibody was generated by the hybridization of mouse myeloma cells with lymph node cells from an immunized rat. The MAb 3F8 specifically recognized importin α7 among importin α isoforms as evidenced by immunoblotting analysis. Furthermore, MAb 3F8 detected exogenous importin α7 in COS-7 cells by immunofluorescence. This MAb will be useful in the analysis of the isoform-specific function of importin α7.
- Published
- 2011
- Full Text
- View/download PDF
22. Generation of rat monoclonal antibody specific for mouse importin α8.
- Author
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Moriyama T, Mizuguchi C, and Yoneda Y
- Subjects
- Active Transport, Cell Nucleus immunology, Animals, COS Cells, Chlorocebus aethiops, Enzyme-Linked Immunosorbent Assay, Fluorescent Antibody Technique, HeLa Cells, Humans, Immunoblotting, Mice, Rats, alpha Karyopherins genetics, alpha Karyopherins isolation & purification, Antibodies, Monoclonal biosynthesis, Antibodies, Monoclonal immunology, alpha Karyopherins immunology
- Abstract
The transport of proteins in and out of the nucleus plays important roles in major cellular processes, such as signal transduction and regulation of cell cycle. Proteins that contain a nuclear localization signal (NLS) are recognized by an importin α/β heterodimer and targeted to the nucleus. Here, we report the generation of a rat monoclonal antibody (MAb) that recognizes a novel importin α family member, importin α8, which is expressed during oocyte maturation and early embryonic development. Immunoblot and immunolocalization analyses showed that this MAb was specific for mouse importin α8 and not other importin α family members. These data suggest that this MAb is useful for analyzing molecular functions of importin α8.
- Published
- 2011
- Full Text
- View/download PDF
23. Specific monoclonal antibody against the nuclear pore complex protein, Nup96.
- Author
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Mizuguchi C, Oka M, Moriyama T, Tachibana T, and Yoneda Y
- Subjects
- Animals, Enzyme-Linked Immunosorbent Assay, Escherichia coli, Fluorescent Antibody Technique, Immunoblotting, Mice, NIH 3T3 Cells, Plasmids genetics, RNA Interference, RNA, Small Interfering genetics, Rats, Recombinant Proteins immunology, Recombinant Proteins isolation & purification, Antibodies, Monoclonal biosynthesis, Antibodies, Monoclonal immunology, Hybridomas immunology, Nuclear Pore Complex Proteins immunology
- Abstract
Nup96 is a component of the Nup107-160 complex, the largest subunit of the nuclear pore complex. Nup96 is generated as a precursor protein with Nup98. However, the mechanism by which Nup96 contributes to cell function is not clear. We report here on the preparation of a monoclonal antibody (MAb) directed against mouse Nup96. The antibody was produced by the hybridization of mouse myeloma cells with lymph node cells from an immunized rat. The antibody, MAb 4H5, specifically recognized Nup96, as evidenced by immunoblotting using the whole cell lysates. In immunostaining using MAb 4H5, a nuclear rim staining pattern was observed. This antibody will be useful in immunoblotting and immunolocalization experiments, as well as further analyses of the biological function and cellular dynamics of this protein.
- Published
- 2010
- Full Text
- View/download PDF
24. Generation of a rat monoclonal antibody specific for glyoxalase I.
- Author
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Nakadate Y, Mizuguchi C, Azuma M, and Tachibana T
- Subjects
- Animals, COS Cells, Chlorocebus aethiops, Enzyme-Linked Immunosorbent Assay, Fluorescent Antibody Technique, Indirect, Humans, Immunoblotting, Mice, Rats, Antibodies, Monoclonal biosynthesis, Antibodies, Monoclonal immunology, Hybridomas immunology, Lactoylglutathione Lyase immunology
- Abstract
Glyoxalase I (GLO1) is a key enzyme that plays a role in the detoxification of methylglyoxal (MG), a toxic cellular metabolite produced during glycolysis. The present study reports on the preparation and properties of a monoclonal antibody (MAb) directed against mouse GLO1. The antibody was produced by hybridization of mouse myeloma cells with lymph node cells from an immunized rat. The MAb 6F10 specifically recognized GLO1, as evidenced by immunoblotting using a variety of extracts from cultured cells. In immunostaining using MAb 6F10, a diffuse cytoplasmic and nuclear staining pattern was observed. The MAb 6F10 promises to be useful in immunoblotting and immunostaining experiments in various cells and tissues to determine the expression levels of GLO1, as well as to further analyze the biological function of this protein.
- Published
- 2009
- Full Text
- View/download PDF
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