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14. Jute Genomic Resources and Database

Author

Khan, Haseena, Zhang, Liwu, Saha, Dipnarayan, Wei, Huawei, Datta, Subhojit, Satya, Pratik, Mitra, Jiban, Kar, Gouranga, Kole, Chittaranjan, Series Editor, Zhang, Liwu, editor, and Khan, Haseena, editor

Published
2022
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26. Biosynthesis and Chemopreventive Potential of Jute (Corchorus capsularis and C. olitorius) Flavonoids and Phylogeny of Flavonoid Biosynthesis Pathways

Author

Satya, Pratik, additional, Sarkar, Debabrata, additional, Chatterjee, Amitava, additional, Pal, Srikumar, additional, Ray, Soham, additional, Sharma, Laxmi, additional, Roy, Suman, additional, Bera, Amit, additional, Ghosh, Srinjoy, additional, Mitra, Jiban, additional, Kar, Gouranga, additional, and Singh, Nagendra Kumar, additional

Published
2022
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27. Sui Generis Development of Molecular Markers from Transcriptome of Crotalaria juncea, a Fabaceae Family Bast Fiber Crop.

Author

Saha, Dipnarayan, Shaw, Arun Kumar, Mandal, Pallavi, Thimmaiah, Maruthi Rangappa, Datta, Subhojit, Satya, Pratik, Mitra, Jiban, and Kar, Gouranga

Subjects
BRASSICA juncea, MICROSATELLITE repeats, SINGLE nucleotide polymorphisms, TRANSCRIPTOMES, LEGUMES, GENETIC distance, FIBERS
Abstract

Copyright of Journal of Natural Fibers is the property of Taylor & Francis Ltd and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

Published
2023
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33. Pectin biosynthesis pathways are adapted to higher rhamnogalacturonan formation in lignocellulosic jute (Corchorus spp.)

Author

Satya, Pratik, primary, Sarkar, Debabrata, additional, Vijayan, Joshitha, additional, Ray, Soham, additional, Ray, Deb Prasad, additional, Mandal, Nur Alam, additional, Roy, Suman, additional, Sharma, Laxmi, additional, Bera, Amit, additional, Kar, Chandan Sourav, additional, Mitra, Jiban, additional, and Singh, Nagendra Kumar, additional

Published
2020
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35. Transcriptome profiling uncovers β-galactosidases of diverse domain classes influencing hypocotyl development in jute (Corchorus capsularis L.)

Author

Satya, Pratik, primary, Chakraborty, Avrajit, additional, Sarkar, Debabrata, additional, Karan, Maya, additional, Das, Debajeet, additional, Mandal, Nur Alam, additional, Saha, Dipnarayan, additional, Datta, Subhojit, additional, Ray, Soham, additional, Kar, Chandan Sourav, additional, Karmakar, Pran Gobinda, additional, Mitra, Jiban, additional, and Singh, Nagendra Kumar, additional

Published
2018
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38. Identification of genic SSRs in jute (Corchorus capsularis, Malvaceae) and development of markers for phenylpropanoid biosynthesis genes and regulatory genes

Author

Satya, Pratik, primary, Chakraborty, Avrajit, additional, Jana, Sourav, additional, Majumdar, Snehalata, additional, Karan, Maya, additional, Sarkar, Debabrata, additional, Datta, Subhojit, additional, Mitra, Jiban, additional, Kar, Chandan S., additional, Karmakar, Pran Gobinda, additional, and Singh, Nagendra K., additional

Published
2017
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39. The draft genome of Corchorus olitorius cv. JRO-524 (Navin)

Author

Sarkar, Debabrata, primary, Mahato, Ajay Kumar, additional, Satya, Pratik, additional, Kundu, Avijit, additional, Singh, Sangeeta, additional, Jayaswal, Pawan Kumar, additional, Singh, Akshay, additional, Bahadur, Kaushlendra, additional, Pattnaik, Sasmita, additional, Singh, Nisha, additional, Chakraborty, Avrajit, additional, Mandal, Nur Alam, additional, Das, Debajeet, additional, Basu, Tista, additional, Sevanthi, Amitha Mithra, additional, Saha, Dipnarayan, additional, Datta, Subhojit, additional, Kar, Chandan Sourav, additional, Mitra, Jiban, additional, Datta, Karabi, additional, Karmakar, Pran Gobinda, additional, Sharma, Tilak Raj, additional, Mohapatra, Trilochan, additional, and Singh, Nagendra Kumar, additional

Published
2017
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46. The draft genome of Corchorus olitoriuscv. JRO-524 (Navin)

Author

Sarkar, Debabrata, Mahato, Ajay Kumar, Satya, Pratik, Kundu, Avijit, Singh, Sangeeta, Jayaswal, Pawan Kumar, Singh, Akshay, Bahadur, Kaushlendra, Pattnaik, Sasmita, Singh, Nisha, Chakraborty, Avrajit, Mandal, Nur Alam, Das, Debajeet, Basu, Tista, Sevanthi, Amitha Mithra, Saha, Dipnarayan, Datta, Subhojit, Kar, Chandan Sourav, Mitra, Jiban, Datta, Karabi, Karmakar, Pran Gobinda, Sharma, Tilak Raj, Mohapatra, Trilochan, and Singh, Nagendra Kumar

Abstract

Here, we present the draft genome (377.3Mbp) of Corchorus olitoriouscv. JRO-524 (Navin), which is a leading dark jute variety developed from a cross between African (cv. Sudan Green) and indigenous (cv. JRO-632) types. We predicted from the draft genome a total of 57,087 protein-coding genes with annotated functions. We identified a large number of 1765 disease resistance-like and defense response genes in the jute genome. The annotated genes showed the highest sequence similarities with that of Theobroma cacaofollowed by Gossypium raimondii. Seven chromosome-scale genetically anchored pseudomolecules were constructed with a total size of 8.53Mbp and used for synteny analyses with the cocoa and cotton genomes. Like other plant species, gypsyand copiaretrotransposons were the most abundant classes of repeat elements in jute. The raw data of our study are available in SRA database of NCBI with accession number SRX1506532. The genome sequence has been deposited at DDBJ/EMBL/GenBank under the accession LLWS00000000, and the version described in this paper will be the first version (LLWS01000000).

Published
2017
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47. Genetic characterization of global collection of flax (L. UsitatissimumL.) utilizing molecular marker

Author

Nag, Sumita, Mandal, Rupsanatan, and Mitra, Jiban

Abstract

In assess the sufficient knowledge of genetic diversity, population structure and linkage disequilibrium were estimated among the three representative sub-population: Pop 1 (Indian accessions), Pop 2 (different species of Linum genus) and Pop 3 (exotic accessions) of flax using ISSR marker systems. A total of 118 number of alleles were amplified by eleven primers, with an average of 10.64 alleles per primer (100 bp −2072 bp). The maximum PIC value (0.25) was observed in the primer combination UBC808, which indicated that it as the most informative primer among the eleven primers to study genetic diversity among flax genotypes. The results of the AMOVA indicated that genetic variation within sub-populations (92%) was significantly higher than the variation among the sub-population (8%). According to the results of split network tree analysis, population structure and PCA, the total 264 flax accessions were distinctly clustered into eight genetic groups. Overall the mean LD value was less than the threshold level (r2 < 0.1) explaining that the population has a high level of outcrossing or gene flow. The knowledge generated through ISSR fingerprinting in this study has enhanced our conception of population structure and LD of the flax population, which has high implications for genetic improvement and association mapping.

Published
2021
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