1. Virtual Screening and Molecular Docking to Study the Mechanism of Chinese Medicines in the Treatment of Coronavirus Infection.
- Author
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Ping F, Wang Y, Shen X, Tan C, Zhu L, Xing W, and Xu J
- Subjects
- Alkaloids chemistry, Alkaloids pharmacology, Caspase 3 drug effects, Caspase 3 genetics, Coronavirus metabolism, Coronavirus Infections drug therapy, Cyclooxygenase 2 drug effects, Cyclooxygenase 2 genetics, Databases, Pharmaceutical, Drugs, Chinese Herbal chemistry, Drugs, Chinese Herbal therapeutic use, Flavanones chemistry, Flavanones pharmacology, Humans, Indoles chemistry, Indoles pharmacology, Interleukin-6 genetics, Lignin chemistry, Lignin pharmacology, Luteolin chemistry, Luteolin pharmacology, Mitogen-Activated Protein Kinase 14 drug effects, Mitogen-Activated Protein Kinase 14 genetics, Mitogen-Activated Protein Kinase 8 drug effects, Mitogen-Activated Protein Kinase 8 genetics, Molecular Docking Simulation, NF-kappa B p50 Subunit drug effects, NF-kappa B p50 Subunit genetics, Naphthols chemistry, Naphthols pharmacology, Nitric Oxide Synthase Type III drug effects, Nitric Oxide Synthase Type III genetics, Protein Interaction Maps, Quercetin chemistry, Quercetin pharmacology, SARS-CoV-2 metabolism, Signal Transduction, Sitosterols chemistry, Sitosterols pharmacology, Transcriptome drug effects, Transcriptome genetics, Coronavirus drug effects, Drugs, Chinese Herbal pharmacology, SARS-CoV-2 drug effects, COVID-19 Drug Treatment
- Abstract
BACKGROUND Heat-clearing and detoxifying herbs (HDHs) play an important role in the prevention and treatment of coronavirus infection. However, their mechanism of action needs further study. This study aimed to explore the anti-coronavirus basis and mechanism of HDHs. MATERIAL AND METHODS Database mining was performed on 7 HDHs. Core ingredients and targets were screened according to ADME rules combined with Neighborhood, Co-occurrence, Co-expression, and other algorithms. GO enrichment and KEGG pathway analyses were performed using the R language. Finally, high-throughput molecular docking was used for verification. RESULTS HDHs mainly acts on NOS3, EGFR, IL-6, MAPK8, PTGS2, MAPK14, NFKB1, and CASP3 through quercetin, luteolin, wogonin, indirubin alkaloids, ß-sitosterol, and isolariciresinol. These targets are mainly involved in the regulation of biological processes such as inflammation, activation of MAPK activity, and positive regulation of NF-kappaB transcription factor activity. Pathway analysis further revealed that the pathways regulated by these targets mainly include: signaling pathways related to viral and bacterial infections such as tuberculosis, influenza A, Ras signaling pathways; inflammation-related pathways such as the TLR, TNF, MAPK, and HIF-1 signaling pathways; and immune-related pathways such as NOD receptor signaling pathways. These pathways play a synergistic role in inhibiting lung inflammation and regulating immunity and antiviral activity. CONCLUSIONS HDHs play a role in the treatment of coronavirus infection by regulating the body's immunity, fighting inflammation, and antiviral activities, suggesting a molecular basis and new strategies for the treatment of COVID-19 and a foundation for the screening of new antiviral drugs.
- Published
- 2022
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