1. Conserved gatekeeper methionine regulates the binding and access of kinase inhibitors to ATP sites of MAP2K1, 4, and 7: Clues for developing selective inhibitors.
- Author
-
Yumura S, Kitagawa D, Moritsugu K, Nakayama A, Shinada T, Sawa M, and Kinoshita T
- Subjects
- Humans, Binding Sites, Mitogen-Activated Protein Kinase 7 metabolism, Mitogen-Activated Protein Kinase 7 antagonists & inhibitors, Mitogen-Activated Protein Kinase 7 chemistry, MAP Kinase Kinase 1 antagonists & inhibitors, MAP Kinase Kinase 1 metabolism, MAP Kinase Kinase 7 metabolism, MAP Kinase Kinase 7 antagonists & inhibitors, MAP Kinase Kinase 7 chemistry, Structure-Activity Relationship, Molecular Dynamics Simulation, Crystallography, X-Ray, Molecular Structure, Mitogen-Activated Protein Kinase 1 metabolism, Mitogen-Activated Protein Kinase 1 antagonists & inhibitors, Lactones, Resorcinols, MAP Kinase Kinase 4, Protein Kinase Inhibitors pharmacology, Protein Kinase Inhibitors chemistry, Protein Kinase Inhibitors chemical synthesis, Adenosine Triphosphate metabolism, Adenosine Triphosphate chemistry, Methionine chemistry, Methionine metabolism, Zearalenone analogs & derivatives, Zearalenone chemistry, Zearalenone pharmacology, Zearalenone metabolism, Zearalenone administration & dosage
- Abstract
Mitogen-activated protein kinase kinases (MAP2Ks) 1, 4, and 7 are potential targets for treating various diseases. Here, we solved the crystal structures of MAP2K1 and MAP2K4 complexed with covalent inhibitor 5Z-7-oxozeaenol (5Z7O). The elucidated structures showed that 5Z7O was non-covalently bound to the ATP binding site of MAP2K4, while it covalently attached to cysteine at the DFG-1 position of the deep ATP site of MAP2K1. In contrast, we previously showed that 5Z7O covalently binds to MAP2K7 via another cysteine on the solvent-accessible edge of the ATP site. Structural analyses and molecular dynamics calculations indicated that the configuration and mobility of conserved gatekeeper methionine located at the central ATP site regulated the binding and access of 5Z7O to the ATP site of MAP2Ks. These structural features provide clues for developing highly potent and selective inhibitors against MAP2Ks. Abbreviations: ATP, adenosine triphosphate; FDA, Food and Drug Administration; MAP2Ks, mitogen-activated protein kinase kinases; MD, molecular dynamics; NSCLC, non-small cell lung cancer; 5Z7O, 5Z-7-oxozeaenol; PDB, protein data bank; RMSD, root-mean-square deviation., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Ltd. All rights reserved.)
- Published
- 2024
- Full Text
- View/download PDF