188 results on '"Mitáš P"'
Search Results
2. Towards improved property prediction of two-dimensional (2D) materials using many-body Quantum Monte Carlo methods
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Wines, Daniel, Ahn, Jeonghwan, Benali, Anouar, Kent, Paul R. C., Krogel, Jaron T., Kwon, Yongkyung, Mitas, Lubos, Reboredo, Fernando A., Rubenstein, Brenda, Saritas, Kayahan, Shin, Hyeondeok, Štich, Ivan, and Ataca, Can
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Condensed Matter - Materials Science - Abstract
The field of two-dimensional (2D) materials has grown dramatically in the last two decades. 2D materials can be utilized for a variety of next-generation optoelectronic, spintronic, clean energy, and quantum computation applications. These 2D structures, which are often exfoliated from layered van der Waals (vdW) materials, possess highly inhomogeneous electron densities and can possess short- and long-range electron correlations. The complexities of 2D materials make them challenging to study with standard mean-field electronic structure methods such as density functional theory (DFT), which relies on approximations for the unknown exchange-correlation functional. In order to overcome the limitations of DFT, highly accurate many-body electronic structure approaches such as Diffusion Monte Carlo (DMC) can be utilized. In the past decade, DMC has been used to calculate accurate magnetic, electronic, excitonic, and topological properties in addition to accurately capturing interlayer interactions and cohesion and adsorption energetics of 2D materials. This approach has been applied to 2D systems of wide interest including graphene, phosphorene, MoS$_2$, CrI$_3$, VSe$_2$, GaSe, GeSe, borophene, and several others. In this review article, we highlight some successful recent applications of DMC to 2D systems for improved property predictions beyond standard DFT.
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- 2024
3. Quantum Monte Carlo pair orbital wave functions for periodic systems towards the thermodynamical limit: ground states, excitations and spinors
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Mitas, Lubos
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Condensed Matter - Strongly Correlated Electrons ,Condensed Matter - Other Condensed Matter - Abstract
We derive many-body single- and multi-reference wave functions for quantum Monte Carlo of periodic systems with an anti-symmetric portion that explicitly integrates over the Brillouin zone of one-particle Bloch states. The wave functions are BCS-like determinants for singlets and pfaffians for polarized states built with appropriate pair orbitals. This ab initio formalism is broadly applicable, eg, to description of quasi-particle band gaps, optical excitations and to systems with complicated Fermi surfaces. It generalizes to spin-dependent interactions using two-component spinor pairs.
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- 2023
4. A new generation of effective core potentials: selected Lanthanides and heavy elements
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Zhou, Haihan, Kincaid, Benjamin, Wang, Guangming, Annaberdiyev, Abdulgani, Ganesh, Panchapakesan, and Mitas, Lubos
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Condensed Matter - Materials Science ,Physics - Chemical Physics ,Physics - Computational Physics - Abstract
We construct correlation-consistent effective core potentials (ccECPs) for a selected set of heavy atoms and f-elements that are of significant current interest in materials and chemical applications, including Y, Zr, Nb, Rh, Ta, Re, Pt, Gd, and Tb. As customary, ccECPs consist of spin-orbit averaged relativistic effective potential (AREP) and effective spin-orbit (SO) terms. For the AREP part, our constructions are carried out within a relativistic coupled-cluster framework while also taking into objective function one-particle characteristics for improved convergence in optimizations. The transferability is adjusted using binding curves of hydride and oxide molecules. We address the difficulties encountered with f-elements, such as the presence of large cores and multiple near-degeneracies of excited levels. For these elements, we construct ccECPs with core-valence partitioning that includes 4f-subshell in the valence space. The developed ccECPs achieve an excellent balance between accuracy, size of the valence space, and transferability and are also suitable to be used in plane wave codes with reasonable energy cutoffs.
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- 2023
5. The role of electron correlations in the electronic structure of putative Chern magnet TbMn$_6$Sn$_6$
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Annaberdiyev, Abdulgani, Mandal, Subhasish, Mitas, Lubos, Krogel, Jaron T., and Ganesh, Panchapakesan
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Condensed Matter - Strongly Correlated Electrons ,Condensed Matter - Materials Science ,Physics - Chemical Physics ,Physics - Computational Physics - Abstract
A member of the RMn$_6$Sn$_6$ rare-earth family materials, TbMn$_6$Sn$_6$, recently showed experimental signatures of the realization of a quantum-limit Chern magnet. In this work, we use quantum Monte Carlo (QMC) and density functional theory with Hubbard $U$ (DFT$+U$) calculations to examine the electronic structure of TbMn$_6$Sn$_6$. To do so, we optimize accurate, correlation-consistent pseudopotentials for Tb and Sn using coupled-cluster and configuration-interaction (CI) methods. We find that DFT$+U$ and single-reference QMC calculations suffer from the same overestimation of the magnetic moments as meta-GGA and hybrid density functional approximations. Our findings point to the need for improved orbitals/wavefunctions for this class of materials, such as natural orbitals from CI, or for the inclusion of multi-reference effects that capture the static correlations for an accurate prediction of magnetic properties. DFT$+U$ with Mn magnetic moments adjusted to experiment predict the Dirac crossing in bulk to be close to the Fermi level, within $\sim 120$ meV, in agreement with the experiments. Our non-stoichiometric slab calculations show that the Dirac crossing approaches even closer to the Fermi level, suggesting the possible realization of Chern magnetism in this limit., Comment: This is the peer-reviewed, accepted version of the manuscript. 17 pages, 10 figures. https://doi.org/10.1038/s41535-023-00583-6
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- 2023
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6. Correlation consistent effective core potentials for late 3d transition metals adapted for plane wave calculations
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Kincaid, Benjamin, Wang, Guangming, Zhou, Haihan, and Mitas, Lubos
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Condensed Matter - Materials Science - Abstract
We construct a new modification of correlation consistent effective potentials (ccECPs) for late $3d$ elements Cr-Zn with Ne-core that are adapted for efficiency and low energy cut-offs in plane wave calculations. The decrease in accuracy is rather minor so that the constructions are in the same overall accuracy class as the original ccECPs. The resulting new constructions work with energy cut-offs at or below $\approx$ 400 Ry and thus make calculations of large systems with transition metals feasible for plane wave codes. We provide also the basic benchmarks for atomic spectra and molecular tests of this modified option that we denote as ccECP-soft.
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- 2022
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7. Associations of accelerometer measured school- and non-school based physical activity and sedentary time with body mass index: IPEN Adolescent study
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Van Dyck, Delfien, Barnett, Anthony, Cerin, Ester, Conway, Terry L, Esteban-Cornejo, Irene, Hinckson, Erica, Rubín, Lukáš, Rush, Elaine, Baron-Epel, Orna, Cain, Kelli L, Christiansen, Lars Breum, Islam, Mohammed Zakiul, Mitáš, Josef, Molina-García, Javier, Oyeyemi, Adewale, Ranjani, Harish, Reis, Rodrigo, Santos, Maria Paula, Sit, Cindy, Timperio, Anna, Muda, Wan Abdul Manan Wan, and Sallis, James F
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Biomedical and Clinical Sciences ,Public Health ,Health Sciences ,Obesity ,Pediatric ,Nutrition ,Prevention ,Clinical Research ,Prevention of disease and conditions ,and promotion of well-being ,3.1 Primary prevention interventions to modify behaviours or promote wellbeing ,Metabolic and endocrine ,Cardiovascular ,Cancer ,Stroke ,Oral and gastrointestinal ,Accelerometry ,Adolescent ,Body Mass Index ,Cross-Sectional Studies ,Exercise ,Female ,Humans ,Male ,Overweight ,Sedentary Behavior ,Adolescents ,Body weight ,Physical activity ,Public health ,Medical and Health Sciences ,Education ,Nutrition and dietetics ,Epidemiology ,Sports science and exercise - Abstract
BackgroundThis study examined the strength, shape and direction of associations of accelerometer-assessed overall, school- and non-school-based moderate-to-vigorous physical activity (MVPA) and sedentary time (ST) with BMI among adolescents across the world. Second, we examined whether these associations differed by study site and sex.MethodsCross-sectional data from the IPEN Adolescent study, an observational multi-country study, were used. Participants wore an accelerometer for seven days, reported height and weight, and completed a socio-demographic survey. In total, 4852 adolescents (46.6% boys), aged 11-19 years (mean age = 14.6, SD = 1.7 years) were included in the analyses, using generalized additive mixed models.ResultsAdolescents accumulated on average 41.3 (SD = 22.6) min/day of MVPA and 531.8 (SD = 81.1) min/day of ST, and the prevalence of overweight and obesity was 17.2% (IOTF), but these mean values differed by country. Linear negative associations of accelerometer-based MVPA and ST with standardized BMI scores and the likelihood of being overweight/obese were found. School-based ST and non-school-based MVPA were more strongly negatively associated to the outcomes than non-school based ST and school-based MVPA. Study site moderated the associations; adolescent sex did not. No curvilinear associations were found.ConclusionsThis multi-country study confirmed the importance of MVPA as a potential protective factor against overweight/obesity in adolescents. Non-school-based MVPA seemed to be the main driver of these associations. Unexpected results were found for ST, calling for further examination in methodologically sound international studies but using inclinometers or pressure sensors to provide more precise ST measures.
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- 2022
8. Decision-Dependent Risk Minimization in Geometrically Decaying Dynamic Environments
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Ray, Mitas, Drusvyatskiy, Dmitriy, Fazel, Maryam, and Ratliff, Lillian J.
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Mathematics - Optimization and Control ,Computer Science - Machine Learning ,Statistics - Machine Learning - Abstract
This paper studies the problem of expected loss minimization given a data distribution that is dependent on the decision-maker's action and evolves dynamically in time according to a geometric decay process. Novel algorithms for both the information setting in which the decision-maker has a first order gradient oracle and the setting in which they have simply a loss function oracle are introduced. The algorithms operate on the same underlying principle: the decision-maker repeatedly deploys a fixed decision over the length of an epoch, thereby allowing the dynamically changing environment to sufficiently mix before updating the decision. The iteration complexity in each of the settings is shown to match existing rates for first and zero order stochastic gradient methods up to logarithmic factors. The algorithms are evaluated on a "semi-synthetic" example using real world data from the SFpark dynamic pricing pilot study; it is shown that the announced prices result in an improvement for the institution's objective (target occupancy), while achieving an overall reduction in parking rates., Comment: Accepted at AAAI 2022
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- 2022
9. Assessing the accuracy of compound formation energies with quantum Monte Carlo
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Isaacs, Eric B., Shin, Hyeondeok, Annaberdiyev, Abdulgani, Wolverton, Chris, Mitas, Lubos, Benali, Anouar, and Heinonen, Olle
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Condensed Matter - Materials Science ,Physics - Computational Physics - Abstract
Accurately predicting the formation energy of a compound, which describes its thermodynamic stability, is a key challenge in materials physics. Here, we employ many-body quantum Monte Carlo (QMC) with single-reference trial functions to compute the formation energy of two electronically disparate compounds, the intermetallic VPt$_2$ and the semiconductor CuI, for which standard density functional theory (DFT) predictions using both the Perdew-Burke Ernzerhof (PBE) and the strongly constrained and appropriately normed (SCAN) density functional approximations deviate markedly from available experimental values. For VPt$_2$, we find an agreement between QMC, SCAN, and PBE0 estimates, which therefore remain in disagreement with the much less exothermic experimental value. For CuI, the QMC result agrees with neither SCAN nor PBE pointing towards DFT exchange-correlation biases, likely related to the localized Cu $3d$ electrons. Compared to the behavior of some density functional approximations within DFT, spin-averaged QMC exhibits a smaller but still appreciable deviation when compared to experiment. The QMC result is slightly improved by incorporating spin-orbit corrections for CuI and solid I$_2$, so that experiment and theory are brought into imperfect but reasonable agreement within about 120~meV/atom.
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- 2022
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10. Electronic structure of $\boldsymbol{\alpha}$-RuCl$_3$ by fixed-node and fixed-phase diffusion Monte Carlo methods
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Annaberdiyev, Abdulgani, Melton, Cody A., Wang, Guangming, and Mitas, Lubos
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Condensed Matter - Strongly Correlated Electrons ,Condensed Matter - Materials Science ,Physics - Chemical Physics ,Physics - Computational Physics - Abstract
Layered material $\alpha$-RuCl$_3$ has caught wide attention due to its possible realization of Kitaev's spin liquid and its electronic structure that involves the interplay of electron-electron correlations and spin-orbit effects. Several DFT$+U$ studies have suggested that both electron-electron correlations and spin-orbit effects are crucial for accurately describing the band gap. This work studies the importance of these two effects using fixed-node and fixed-phase diffusion Monte Carlo calculations both in spin-averaged and explicit spin-orbit formalisms. In the latter, the Slater-Jastrow trial function is constructed from two-component spin-orbitals using our recent quantum Monte Carlo (QMC) developments and thoroughly tested effective core potentials. Our results show that the gap in the ideal crystal is already accurately described by the spin-averaged case, with the dominant role being played by the magnetic ground state with significant exchange and electron correlation effects. We find qualitative agreement between hybrid DFT, DFT+$U$, and QMC. In addition, QMC results agree very well with available experiments, and we identify the values of exact Fock exchange mixing that provide comparable gaps. Explicit spin-orbit QMC calculations reveal that the effect of spin-orbit coupling on the gap is minor, of the order of 0.2 eV, which corresponds to the strength of the spin-orbit of the Ru atom.
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- 2022
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11. A new generation of effective core potentials from correlated and spin-orbit calculations: selected heavy elements
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Wang, Guangming, Kincaid, Benjamin, Zhou, Haihan, Annaberdiyev, Abdulgani, Bennett, M. Chandler, Krogel, Jaron T., and Mitas, Lubos
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Condensed Matter - Materials Science ,Physics - Chemical Physics - Abstract
We introduce new correlation consistent effective core potentials (ccECPs) for the elements I, Te, Bi, Ag, Au, Pd, Ir, Mo, and W with $4d$, $5d$, $6s$ and $6p$ valence spaces. These ccECPs are given as a sum of spin-orbit averaged relativistic effective potential (AREP) and effective spin-orbit (SO) terms. The construction involves several steps with increasing refinements from more simple to fully correlated methods. The optimizations are carried out with objective functions that include weighted many-body atomic spectra, norm-conservation criteria, and spin-orbit splittings. Transferability tests involve molecular binding curves of corresponding hydride and oxide dimers. The constructed ccECPs are systematically better and in a few cases on par with previous effective core potential (ECP) tables on all tested criteria and provide a significant increase in accuracy for valence-only calculations with these elements. Our study confirms the importance of the AREP part in determining the overall quality of the ECP even in the presence of sizable spin-orbit effects. The subsequent quantum Monte Carlo (QMC) calculations point out the importance of accurate trial wave functions which in some cases (mid series transition elements) require treatment well beyond single-reference., Comment: 24 pages, 27 figures
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- 2022
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12. A quantum Monte Carlo study of systems with effective core potentials and node nonlinearities
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Zhou, Haihan, Scemama, Anthony, Wang, Guangming, Annaberdiyev, Abdulgani, Kincaid, Benjamin, Caffarel, Michel, and Mitas, Lubos
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Physics - Computational Physics ,Physics - Chemical Physics - Abstract
We study beryllium dihydride (BeH$_2$) and acetylene (C$_2$H$_2$) molecules using real-space diffusion Monte Carlo (DMC) method. The molecules serve as perhaps the simplest prototypes that illustrate the difficulties with biases in the fixed-node DMC calculations that might appear with the use of effective core potentials (ECPs) or other nonlocal operators. This is especially relevant for the recently introduced correlation consistent ECPs (ccECPs) for $2s2p$ elements. Corresponding ccECPs exhibit deeper potential functions due to higher fidelity to all-electron counterparts, which could lead to larger local energy fluctuations. We point out that the difficulties stem from issues that are straightforward to address by upgrades of basis sets, use of T-moves for nonlocal terms, inclusion of a few configurations into the trial function and similar. The resulting accuracy corresponds to the ccECP target (chemical accuracy) and it is in consistent agreement with independent correlated calculations. Further possibilities for upgrading the reliability of the DMC algorithm and considerations for better adapted and more robust Jastrow factors are discussed as well., Comment: 13 pages, 5 figures
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- 2021
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13. Weighted nodal domain averages of eigenstates for quantum Monte Carlo and beyond
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Mitas, Lubos and Annaberdiyev, Abdulgani
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Physics - Computational Physics - Abstract
We study the nodal properties of many-body eigenstates of stationary Schr\"odinger equation that affect the accuracy of real-space quantum Monte Carlo calculations. In particular, we introduce weighted nodal domain averages that provide a new probe of nodal surfaces beyond the usual expectations. Particular choices for the weight function reveal, for example, that the difference between two arbitrary fermionic eigenvalues is given by the nodal hypersurface integrals normalized by overlaps with the bosonic ground state of the given Hamiltonian. Noninteracting and fully interacting Be atom with corresponding almost exact and approximate wave functions are used to illustrate several aspects of these concepts. Variational formulations that employ different weights are proposed for prospective improvement of nodes in variational and fixed-node diffusion Monte Carlo calculations.
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- 2021
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14. Cohesion and excitations of diamond-structure silicon by quantum Monte Carlo: Benchmarks and control of systematic biases
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Annaberdiyev, Abdulgani, Wang, Guangming, Melton, Cody A., Bennett, M. Chandler, and Mitas, Lubos
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Condensed Matter - Materials Science ,Physics - Computational Physics - Abstract
We have carried out quantum Monte Carlo (QMC) calculations of silicon crystal focusing on the accuracy and systematic biases that affect the electronic structure characteristics. The results show that 64 and 216 atom supercells provide an excellent consistency for extrapolated energies per atom in the thermodynamic limit for ground, excited, and ionized states. We have calculated the ground state cohesion energy with both $\textit{systematic and statistical errors}$ below $\approx$0.05 eV. The ground state exhibits a fixed-node error of only $1.3(2)\%$ of the correlation energy, suggesting an unusually high accuracy of the corresponding single-reference trial wave function. We obtain a very good agreement between optical and quasiparticle gaps that affirms the marginal impact of excitonic effects. Our most accurate results for band gaps differ from the experiments by about 0.2 eV. This difference is assigned to a combination of residual finite-size and fixed-node errors. We have estimated the crystal Fermi level referenced to vacuum that enabled us to calculate the edges of valence and conduction bands in agreement with experiments., Comment: Peer-reviewed version
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- 2021
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15. Function Design for Improved Competitive Ratio in Online Resource Allocation with Procurement Costs
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Ray, Mitas, Sadeghi, Omid, Ratliff, Lillian J., and Fazel, Maryam
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Mathematics - Optimization and Control ,Computer Science - Machine Learning ,Statistics - Machine Learning - Abstract
We study the problem of online resource allocation, where multiple customers arrive sequentially and the seller must irrevocably allocate resources to each incoming customer while also facing a procurement cost for the total allocation. Assuming resource procurement follows an a priori known marginally increasing cost function, the objective is to maximize the reward obtained from fulfilling the customers' requests sans the cumulative procurement cost. We analyze the competitive ratio of a primal-dual algorithm in this setting, and develop an optimization framework for synthesizing a surrogate function for the procurement cost function to be used by the algorithm, in order to improve the competitive ratio of the primal-dual algorithm. Our first design method focuses on polynomial procurement cost functions and uses the optimal surrogate function to provide a more refined bound than the state of the art. Our second design method uses quasiconvex optimization to find optimal design parameters for a general class of procurement cost functions. Numerical examples are used to illustrate the design techniques. We conclude by extending the analysis to devise a posted pricing mechanism in which the algorithm does not require the customers' preferences to be revealed.
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- 2020
16. Binding and excitations in Si$_x$H$_y$ molecular systems using quantum Monte Carlo
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Wang, Guangming, Annaberdiyev, Abdulgani, and Mitas, Lubos
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Physics - Chemical Physics ,Condensed Matter - Materials Science - Abstract
We present high-accuracy correlated calculations of small Si$_x$H$_y$ molecular systems both in the ground and excited states. We employ quantum Monte Carlo (QMC) together with a variety of many-body wave function approaches based on basis set expansions. The calculations are carried out in a valence-only framework using recently derived correlation consistent effective core potentials. Our primary goal is to understand the fixed-node diffusion QMC errors in both the ground and excited states with single-reference trial wave functions. Using a combination of methods, we demonstrate the very high accuracy of the QMC atomization energies being within $\approx$ 0.07 eV or better when compared with essentially exact results. By employing proper choices for trial wave functions, we have found that the fixed-node QMC biases for total energies are remarkably uniform ranging between $1-3.5$ % with absolute values at most $\approx$ 0.2 eV across the systems and several types of excitations such as singlets and triplets as well as low-lying and Rydberg-like states. Our results further corroborate that Si systems, and presumably also related main group IV and V elements of the periodic table (Ge, Sn, etc), exhibit some of the lowest fixed-node biases found in valence-only electronic structure QMC calculations., Comment: 10 pages, 1 figure
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- 2020
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17. Bifurcation study for a surface-acoustic-wave driven meniscus
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Mitas, Kevin David Joachim, Manor, Ofer, and Thiele, Uwe
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Nonlinear Sciences - Pattern Formation and Solitons - Abstract
A thin-film model for a meniscus driven by Rayleigh surface acoustic waves (SAW) is analysed, a problem closely related to the classical Landau-Levich or dragged-film problem where a plate is withdrawn at constant speed from a bath. We consider a mesoscopic hydrodynamic model for a partially wetting liquid, were wettability is incorporated via a Derjaguin (or disjoining) pressure and combine SAW driving with the elements known from the dragged-film problem. For a one-dimensional substrate, i.e., neglecting transverse perturbations, we employ numerical path continuation to investigate in detail how the various occurring steady and time-periodic states depend on relevant control parameters like the Weber number and SAW strength. The bifurcation structure related to qualitative transitions caused by the SAW is analysed with particular attention on the {appearance and interplay of Hopf bifurcations where branches of time-periodic states emerge. The latter correspond to the regular shedding of liquid ridges from the meniscus. The obtained information is relevant to the entire class of dragged-film problems.
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- 2020
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18. QMCPACK: Advances in the development, efficiency, and application of auxiliary field and real-space variational and diffusion Quantum Monte Carlo
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Kent, P. R. C., Annaberdiyev, Abdulgani, Benali, Anouar, Bennett, M. Chandler, Borda, Edgar Josue Landinez, Doak, Peter, Jordan, Kenneth D., Krogel, Jaron T., Kylanpaa, Ilkka, Lee, Joonho, Luo, Ye, Malone, Fionn D., Melton, Cody A., Mitas, Lubos, Morales, Miguel A., Neuscamman, Eric, Reboredo, Fernando A., Rubenstein, Brenda, Saritas, Kayahan, Upadhyay, Shiv, Hao, Hongxia, Wang, Guangming, Zhang, Shuai, and Zhao, Luning
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Physics - Computational Physics - Abstract
We review recent advances in the capabilities of the open source ab initio Quantum Monte Carlo (QMC) package QMCPACK and the workflow tool Nexus used for greater efficiency and reproducibility. The auxiliary field QMC (AFQMC) implementation has been greatly expanded to include k-point symmetries, tensor-hypercontraction, and accelerated graphical processing unit (GPU) support. These scaling and memory reductions greatly increase the number of orbitals that can practically be included in AFQMC calculations, increasing accuracy. Advances in real space methods include techniques for accurate computation of band gaps and for systematically improving the nodal surface of ground state wavefunctions. Results of these calculations can be used to validate application of more approximate electronic structure methods including GW and density functional based techniques. To provide an improved foundation for these calculations we utilize a new set of correlation-consistent effective core potentials (pseudopotentials) that are more accurate than previous sets; these can also be applied in quantum-chemical and other many-body applications, not only QMC. These advances increase the efficiency, accuracy, and range of properties that can be studied in both molecules and materials with QMC and QMCPACK.
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- 2020
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19. Two-dimensional patterns in dip coating -- first steps on the continuation path
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Ly, Phong-Minh Timmy, Mitas, Kevin David Joachim, Thiele, Uwe, and Gurevich, Svetlana V.
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Nonlinear Sciences - Pattern Formation and Solitons - Abstract
We present a brief comparative investigation of the bifurcation structure related to the formation of two-dimensional deposition patterns as described by continuum models of Cahn-Hilliard type. These are, on the one hand a driven Cahn-Hilliard model for Langmuir-Blodgett transfer of a surfactant layer from the surface of a bath onto a moving plate and on the other hand a driven thin-film equation modelling the surface acoustic wave-driven coating of a plate by a simple liquid. In both cases, we present selected two-dimensional steady states corresponding to deposition patterns and discuss the main structure of the corresponding bifurcation diagrams.
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- 2020
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20. Many-body electronic structure of LaScO$_3$ by real space quantum Monte Carlo
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Melton, Cody A. and Mitas, Lubos
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Condensed Matter - Materials Science - Abstract
We present real space quantum Monte Carlo (QMC) calculations of the scandate LaScO$_3$ that proved to be challenging for traditional electronic structure approaches due to strong correlation effects resulting in inaccurate band gaps from DFT and $GW$ methods when compared with existing experimental data. Besides calculating an accurate QMC band gap corrected for supercell size biases and in agreement with numerous experiments, we also predict the cohesive energy of the crystal using the standard fixed-node QMC without any empirical or non-variational parameters. We show that promotion (optical) gap and fundamental gap agree with each other illustrating a clear absence of significant excitonic effects in the ideal crystal. We obtained these results in perfect consistency in two independent tracks that employ different basis sets (plane wave vs. localized gaussians), different codes for generating orbitals (\textsc{Quantum Espresso} vs. \textsc{Crystal}), different QMC codes (\textsc{Qmcpack} vs. \textsc{Qwalk}) and different high-accuracy pseudopotentials (ccECPs vs. Troullier-Martins) presenting the maturity and consistency of QMC methodology and tools for studies of strongly correlated problems., Comment: 12 pages, 8 tables, 5 figures
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- 2020
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21. International Physical Activity and Built Environment Study of adolescents: IPEN Adolescent design, protocol and measures
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Cain, Kelli L, Salmon, Jo, Conway, Terry L, Cerin, Ester, Hinckson, Erica, Mitáš, Josef, Schipperijn, Jasper, Frank, Lawrence D, Anjana, Ranjit Mohan, Barnett, Anthony, Dygrýn, Jan, Islam, Mohammed Zakiul, Molina-García, Javier, Moran, Mika, Muda, Wan Abdul Manan Wan, Oyeyemi, Adewale L, Reis, Rodrigo, Santos, Maria Paula, Schmidt, Tanja, Schofield, Grant M, Timperio, Anna, Van Dyck, Delfien, and Sallis, James F
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Biomedical and Clinical Sciences ,Public Health ,Health Sciences ,Pediatric Research Initiative ,Pediatric ,Obesity ,Nutrition ,Prevention ,2.3 Psychological ,social and economic factors ,Aetiology ,Cancer ,Cardiovascular ,Stroke ,Metabolic and endocrine ,Oral and gastrointestinal ,Adolescent ,Australia ,Bangladesh ,Belgium ,Brazil ,Built Environment ,Child ,Cross-Sectional Studies ,Czech Republic ,Environment Design ,Exercise ,Female ,Hong Kong ,Humans ,India ,Israel ,Malaysia ,Male ,New Zealand ,Nigeria ,Portugal ,Residence Characteristics ,Spain ,Walking ,Young Adult ,epidemiology ,preventive medicine ,public health ,statistics & ,research methods ,statistics & research methods ,Clinical Sciences ,Public Health and Health Services ,Other Medical and Health Sciences ,Biomedical and clinical sciences ,Health sciences ,Psychology - Abstract
IntroductionOnly international studies can provide the full variability of built environments and accurately estimate effect sizes of relations between contrasting environments and health-related outcomes. The aims of the International Physical Activity and Environment Study of Adolescents (IPEN Adolescent) are to estimate the strength, shape and generalisability of associations of the community environment (geographic information systems (GIS)-based and self-reported) with physical activity and sedentary behaviour (accelerometer-measured and self-reported) and weight status (normal/overweight/obese).Methods and analysisThe IPEN Adolescent observational, cross-sectional, multicountry study involves recruiting adolescent participants (ages 11-19 years) and one parent/guardian from neighbourhoods selected to ensure wide variations in walkability and socioeconomic status using common protocols and measures. Fifteen geographically, economically and culturally diverse countries, from six continents, participated: Australia, Bangladesh, Belgium, Brazil, Czech Republic, Denmark, Hong Kong SAR, India, Israel, Malaysia, New Zealand, Nigeria, Portugal, Spain and USA. Countries provided survey and accelerometer data (15 countries), GIS data (11), global positioning system data (10), and pedestrian environment audit data (8). A sample of n=6950 (52.6% female; mean age=14.5, SD=1.7) adolescents provided survey data, n=4852 had 4 or more 8+ hours valid days of accelerometer data, and n=5473 had GIS measures. Physical activity and sedentary behaviour were measured by waist-worn ActiGraph accelerometers and self-reports, and body mass index was used to categorise weight status.Ethics and disseminationEthical approval was received from each study site's Institutional Review Board for their in-country studies. Informed assent by adolescents and consent by parents was obtained for all participants. No personally identifiable information was transferred to the IPEN coordinating centre for pooled datasets. Results will be communicated through standard scientific channels and findings used to advance the science of environmental correlates of physical activity, sedentary behaviour and weight status, with the ultimate goal to stimulate and guide actions to create more activity-supportive environments internationally.
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- 2021
22. Physical activity and life satisfaction among adolescents before and during the COVID-19 pandemic
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František Chmelík, Karel Frömel, Dorota Groffik, and Josef Mitáš
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Life satisfaction ,COVID-19 ,Physical activity recommendations ,Organized physical activity ,Psychology ,BF1-990 - Abstract
The negative impact of the COVID-19 pandemic and distance education has significantly affected adolescents' lives. The restrictive policies negatively affected their physical and mental health and life satisfaction. It is therefore desirable to look for ways to eliminate similar negative impacts on adolescents in the future. This study aimed to identify the differences in the association between physical activity and life satisfaction in Polish adolescents before and during the pandemic. The study included 1541 participants (891 before the pandemic and 650 during the pandemic) aged 15–19 years. The International Physical Activity Questionnaire-Long Form questionnaire was used to assess physical activity, and the Bern Subjective Well-Being Questionnaire was used to evaluate life satisfaction. The objectivity of data collection and analysis before and during the pandemic was ensured by the web application the International Database for Research and Educational Support. During the pandemic, we found lower physical activity and life satisfaction in both boys and girls compared to before the pandemic. Girls with low and high physical activity levels showed significantly lower life satisfaction during the pandemic than they did before. Low life satisfaction was associated with lower physical activity, and high life satisfaction was associated with greater total physical activity. Both boys and girls with low and high life satisfaction achieved significantly fewer physical activity recommendations during the pandemic. High life satisfaction increased the likelihood of meeting the recommendations for physical activity before and during the pandemic. This study provides new insights into the differences and associations between life satisfaction and physical activity in adolescent boys and girls before and during the pandemic. It provides suggestions for the prevention of possible future restrictions in the school settings. Support for post-pandemic life satisfaction in adolescents should focus mainly on increasing vigorous physical activity and improving adolescent participation in organized physical activity settings.
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- 2023
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23. Accurate atomic correlation and total energies for correlation consistent effective core potentials
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Annaberdiyev, Abdulgani, Melton, Cody A., Bennett, M. Chandler, Wang, Guangming, and Mitas, Lubos
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Condensed Matter - Materials Science ,Physics - Chemical Physics - Abstract
Very recently, we introduced a set of correlation consistent effective core potentials (ccECPs) constructed within full many-body approaches. By employing significantly more accurate correlated approaches we were able to reach a new level of accuracy for the resulting effective core Hamiltonians. We also strived for simplicity of use and easy transferability into a variety of electronic structure methods in quantum chemistry and condensed matter physics. Here, as a reference for future use, we present exact or nearly-exact total energy calculations for these ccECPs. The calculations cover H-Kr elements and are based on the state-of-the-art configuration interaction (CI), coupled-cluster (CC), and quantum Monte Carlo (QMC) calculations with systematically eliminated/improved errors. In particular, we carry out full CI/CCSD(T)/CCSDT(Q) calculations with cc-pVnZ with up to n=6 basis sets and we estimate the complete basis set limits. Using combinations of these approaches, we achieved an accuracy of $\approx$ 1-10 mHa for K-Zn atoms and $\approx$ 0.1-0.3 mHa for all other elements $-$ within about 1% or better of the ccECP total correlation energies. We also estimate the corresponding kinetic energies within the feasible limit of full CI calculations. In order to provide data for QMC calculations, we include fixed-node diffusion Monte Carlo energies for each element that give quantitative insights into the fixed-node biases for single-reference trial wave functions. The results offer a clear benchmark for future high accuracy calculations in a broad variety of correlated wave function methods such as CI and CC as well is in stochastic approaches such as real space sampling QMC.
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- 2019
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24. A new generation of effective core potentials from correlated calculations: 4s and 4p main group elements and first row additions
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Wang, Guangming, Annaberdiyev, Abdulgani, Melton, Cody A., Bennett, M. Chandler, Shulenburger, Luke, and Mitas, Lubos
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Condensed Matter - Materials Science ,Physics - Chemical Physics - Abstract
Recently, we developed a new method for generating effective core potentials (ECPs) using valence energy isospectrality with explicitly correlated all-electron (AE) excitations and norm-conservation criteria. We apply this methodology to the 3$^{rd}$-row main group elements, creating new correlation consistent effective core potentials (ccECPs) and also derive additional ECPs to complete the ccECP table for H-Kr. For K and Ca, we develop Ne-core ECPs and for the $4p$ main group elements, we construct [Ar]$3d^{10}$-core potentials. Scalar relativistic effects are included in their construction. Our ccECPs reproduce AE spectra with significantly better accuracy than many existing pseudopotentials and show better overall consistency across multiple properties. The transferability of ccECPs is tested on monohydride and monoxide molecules over a range of molecular geometries. For the constructed ccECPs we also provide optimized DZ - 6Z valence Gaussian basis sets.
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- 2019
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25. Development and validation of the neighborhood environment walkability scale for youth across six continents.
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Cerin, Ester, Conway, Terry L, Barnett, Anthony, Smith, Melody, Veitch, Jenny, Cain, Kelli L, Salonna, Ferdinand, Reis, Rodrigo S, Molina-García, Javier, Hinckson, Erica, Muda, Wan Abdul Manan Wan, Anjana, Ranjit Mohan, van Dyck, Delfien, Oyeyemi, Adewale L, Timperio, Anna, Christiansen, Lars Breum, Mitáš, Josef, Mota, Jorge, Moran, Mika, Islam, Mohammed Zakiul, Mellecker, Robin R, and Sallis, James F
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Humans ,Exercise ,Walking ,Reproducibility of Results ,Adolescent Behavior ,Health Behavior ,Residence Characteristics ,Adolescent ,Surveys and Questionnaires ,Adolescents ,Built environment ,Confirmatory factor analysis ,Global ,Pooled analyses ,Questionnaire ,Obesity ,Behavioral and Social Science ,Pediatric Research Initiative ,Prevention ,Clinical Research ,Pediatric ,Stroke ,Cardiovascular ,Medical and Health Sciences ,Education ,Public Health - Abstract
BackgroundThe IPEN International Physical Activity and Environment Network Adolescent project was conducted using common study protocols to document the strength, shape, and generalizability of associations of perceived neighborhood environment attributes with adolescents' physical activity and overweight/obesity using data from 15 countries. Countries did not use identical versions of the Neighborhood Environment Walkability Scale for Youth (NEWS-Y) to measure perceived neighborhood environment attributes. Therefore, this study derived a measurement model for NEWS-Y items common to all IPEN Adolescent countries and developed a scoring protocol for the IPEN Adolescent version of the NEWS-Y (NEWS-Y-IPEN) that maximizes between-country comparability of responses. Additionally, this study examined between- and within-country variability, and construct validity of the NEWS-Y-IPEN subscales in relation to neighborhood-level socio-economic status and walkability.MethodsAdolescents and one of their parents (N = 5714 dyads) were recruited from neighborhoods varying in walkability and socio-economic status. To measure perceived neighborhood environment, 14 countries administered the NEWS-Y to parents and one country to adolescents. Confirmatory factor analysis was used to derive comparable country-specific measurement models of the NEWS-Y-IPEN. Country-specific standard deviations quantified within-country variability in the NEWS-Y-IPEN subscales, while linear mixed models determined the percentage of subscale variance due to between-country differences. To examine the construct validity of NEWS-Y-IPEN subscales, we estimated their associations with the categorical measures of area-level walkability and socio-economic status.ResultsFinal country-specific measurement models of the factor-analyzable NEWS-Y-IPEN items provided acceptable levels of fit to the data and shared the same factorial structure with five latent factors (Accessibility and walking facilities; Traffic safety; Pedestrian infrastructure and safety; Safety from crime; and Aesthetics). All subscales showed sufficient levels of within-country variability. Residential density had the highest level of between-country variability. Associations between NEWS-Y-IPEN subscales and area-level walkability and socio-economic status provided strong evidence of construct validity.ConclusionsA robust measurement model and common scoring protocol of NEWS-Y for the IPEN Adolescent project (NEWS-Y-IPEN) were derived. The NEWS-Y-IPEN possesses good factorial and construct validity, and is able to capture between-country variability in perceived neighborhood environments. Future studies employing NEWS-Y-IPEN should use the proposed scoring protocol to facilitate cross-study comparisons and interpretation of findings.
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- 2019
26. Do associations of sex, age and education with transport and leisure-time physical activity differ across 17 cities in 12 countries?
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Mitáš, Josef, Cerin, Ester, Reis, Rodrigo Siqueira, Conway, Terry L, Cain, Kelli L, Adams, Marc A, Schofield, Grant, Sarmiento, Olga L, Christiansen, Lars B, Davey, Rachel, Salvo, Deborah, Orzanco-Garralda, Rosario, Macfarlane, Duncan, Hino, Adriano Akira F, De Bourdeaudhuij, Ilse, Owen, Neville, Van Dyck, Delfien, and Sallis, James F
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Humans ,Exercise ,Leisure Activities ,Adolescent ,Adult ,Aged ,Middle Aged ,Educational Status ,Female ,Male ,Young Adult ,Health disparities ,IPAQ ,International health ,Physical activity domain ,Social epidemiology ,Prevention ,Quality Education ,Medical and Health Sciences ,Education ,Public Health - Abstract
BackgroundLeisure-time and transport activity domains are studied most often because they are considered more amenable to intervention, but to date evidence on these domains is limited. The aim of the present study was to examine patterns of socio-demographic correlates of adults' leisure-time and transport physical activity and how these associations varied across 17 cities in 12 countries.MethodsParticipants (N = 13,745) aged 18-66 years in the IPEN Adult study and with complete data on socio-demographic and self-reported physical activity characteristics were included. Participants reported frequency and duration of leisure-time and transport activities in the last 7 days using the self-administered International Physical Activity Questionnaire-Long Form. Six physical activity outcomes were examined in relation with age, education, and sex, and analyses explored variations by city and curvilinear associations.ResultsSex had the most consistent results, with five of six physical activity outcomes showing females were less active than males. Age had the most complex associations with self-report transport and leisure-time physical activity. Compared to older people, younger adults were less likely to engage in transport physical activity, but among those who did, younger people were likely to engage in more active minutes. Curvilinear associations were found between age and all three leisure-time physical activity outcomes, with the youngest and the oldest being more active. Positive associations with education were found for leisure-time physical activity only. There were significant interactions of city with sex and education for multiple physical activity outcomes.ConclusionsAlthough socio-demographic correlates of physical activity are widely studied, the present results provide new information. City-specific findings suggest there will be value in conducting more detailed case studies. The curvilinear associations of age with leisure-time physical activity as well as significant interactions of leisure-time activity with sex and education should be further investigated. The findings of lower leisure-time physical activity among females as well as people with low education suggest that greater and continued efforts in physical activity policies and programs tailored to these high-risk groups are needed internationally.
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- 2019
27. Four-Lobe Blower Performance Assessment
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Žák Marek, Čupera Jiří, and Mitáš Stanislav
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blower ,supercharging ,lobe profile ,Engineering (General). Civil engineering (General) ,TA1-2040 - Abstract
This paper presents a new 4-lobe blower for supercharging a two-stroke engine. Based on a modified Roots compressor manufactured prototype shows pros and cons of an innovative profile. The results demonstrate that the shape of rotor edges effect out pressure stability. The measurement results include the main assessed parameters: outlet pressure, overall efficiency, losses and outlet air temperature.
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- 2022
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28. Many-body quantum Monte Carlo study of 2D materials: cohesion and band gap in single-layer phosphorene
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Frank, Tobias, Derian, Rene, Tokar, Kamil, Mitas, Lubos, Fabian, Jaroslav, and Stich, Ivan
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Condensed Matter - Mesoscale and Nanoscale Physics - Abstract
Quantum Monte Carlo (QMC) is applied to obtain the fundamental (quasiparticle) electronic band gap, $\Delta_f$, of a semiconducting two-dimensional (2D) phosphorene whose optical and electronic properties fill the void between graphene and 2D transition metal dichalcogenides. Similarly to other 2D materials, the electronic structure of phosphorene is strongly influenced by reduced screening, making it challenging to obtain reliable predictions by single-particle density functional methods. Advanced GW techniques, which include many-body effects as perturbative corrections, are hardly consistent with each other, predicting the band gap of phosphorene with a spread of almost 1 eV, from 1.6 to 2.4 eV. Our QMC results, from infinite periodic superlattices as well as from finite clusters, predict $\Delta_f$ to be about 2.4 eV, indicating that available GW results are systematically underestimating the gap. Using the recently uncovered universal scaling between the exciton binding energy and $\Delta_f$, we predict the optical gap of 1.75 eV that can be directly related to measurements even on encapsulated samples due to its robustness against dielectric environment. The QMC gaps are indeed consistent with recent experiments based on optical absorption and photoluminescence excitation spectroscopy. We also predict the cohesion of phosphorene to be only slightly smaller than that of the bulk crystal. Our investigations not only benchmark GW methods and experiments, but also open the field of 2D electronic structure to computationally intensive but highly predictive QMC methods which include many-body effects such as electronic correlations and van der Waals interactions explicitly., Comment: 7 pages, 3 figures main text; 6 pages, 4 figures supplemental text
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- 2018
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29. Best of many worlds: Robust model selection for online supervised learning
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Muthukumar, Vidya, Ray, Mitas, Sahai, Anant, and Bartlett, Peter L.
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Computer Science - Learning ,Statistics - Machine Learning - Abstract
We introduce algorithms for online, full-information prediction that are competitive with contextual tree experts of unknown complexity, in both probabilistic and adversarial settings. We show that by incorporating a probabilistic framework of structural risk minimization into existing adaptive algorithms, we can robustly learn not only the presence of stochastic structure when it exists (leading to constant as opposed to $\mathcal{O}(\sqrt{T})$ regret), but also the correct model order. We thus obtain regret bounds that are competitive with the regret of an optimal algorithm that possesses strong side information about both the complexity of the optimal contextual tree expert and whether the process generating the data is stochastic or adversarial. These are the first constructive guarantees on simultaneous adaptivity to the model and the presence of stochasticity., Comment: 33 pages, 5 figures
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- 2018
30. New generation of effective core potentials from correlated calculations: 3d transition metal series
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Annaberdiyev, Abdulgani, Wang, Guangming, Melton, Cody A., Bennett, M. Chandler, Shulenburger, Luke, and Mitas, Lubos
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Condensed Matter - Materials Science ,Physics - Chemical Physics - Abstract
Recently, we have introduced a new generation of effective core potentials (ECPs) designed for accurate correlated calculations but equally useful for a broad variety of approaches. The guiding principle has been the isospectrality of all-electron and ECP Hamiltonians for a subset of valence many-body states using correlated, nearly-exact calculations. Here we present such ECPs for the 3d transition series Sc to Zn with Ne-core, i.e, with semi-core 3s and 3p electrons in the valence space. Besides genuine many-body accuracy, the operators are simple, being represented by a few gaussians per symmetry channel with resulting potentials that are bounded everywhere. The transferability is checked on selected molecular systems over a range of geometries. The ECPs show a high overall accuracy with valence spectral discrepancies typically $\approx$ 0.01-0.02 eV or better. They also reproduce binding curves of hydride and oxide molecules typically within 0.02-0.03 eV deviations over the full non-dissociation range of interatomic distances., Comment: 21 pages, 13 figures, 13 tables
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- 2018
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31. New generation of effective core potentials from correlated calculations: 2nd row elements
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Bennett, M. Chandler, Wang, Guangming, Annaberdiyev, Abdulgani, Melton, Cody A., Shulenburger, Luke, and Mitas, Lubos
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Condensed Matter - Materials Science ,Physics - Chemical Physics - Abstract
Very recently, we have introduced correlation consistent effective core potentials (ccECPs) derived from many-body approaches with the main target being its use in explicitly correlated methods but also in mainstream approaches. The ccECPs are based on reproducing excitation energies for a subset of valence states, i.e., achieving a near-isospectrality between the original and pseudo Hamiltonians. In addition, binding curves of dimer molecules have been used for refinement and overall improvement of transferability over a range of bond lengths. Here we apply similar ideas to the second row elements and study several aspects of the constructions in order to find the optimal (or nearly-optimal) solutions within the chosen ECP forms with $3s,3p$ valence space (Ne-core). New constructions exhibit accurate low-lying atomic excitations and equilibrium molecular bonds (on average within $\approx$ $0.03$ eV and $3$ m\AA), however, the errors for Al and Si oxide molecules at short bond lengths are notably larger for both ours and existing ECPs. Assuming this limitation, our ccECPs show a systematic balance between the criteria of atomic spectra accuracy and transferability for molecular bonds. In order to provide another option with much higher uniform accuracy, we also construct He-core ECPs for the whole row with typical discrepancies of $\approx$ 0.01 eV or smaller.
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- 2018
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32. QMCPACK : An open source ab initio Quantum Monte Carlo package for the electronic structure of atoms, molecules, and solids
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Kim, Jeongnim, Baczewski, Andrew, Beaudet, Todd D., Benali, Anouar, Bennett, M. Chandler, Berrill, Mark A., Blunt, Nick S., Borda, Edgar Josue Landinez, Casula, Michele, Ceperley, David M., Chiesa, Simone, Clark, Bryan K., Clay III, Raymond C., Delaney, Kris T., Dewing, Mark, Esler, Kenneth P., Hao, Hongxia, Heinonen, Olle, Kent, Paul R. C., Krogel, Jaron T., Kylanpaa, Ilkka, Li, Ying Wai, Lopez, M. Graham, Luo, Ye, Malone, Fionn D., Martin, Richard M., Mathuriya, Amrita, McMinis, Jeremy, Melton, Cody A., Mitas, Lubos, Morales, Miguel A., Neuscamman, Eric, Parker, William D., Flores, Sergio D. Pineda, Romero, Nichols A., Rubenstein, Brenda M., Shea, Jacqueline A. R., Shin, Hyeondeok, Shulenburger, Luke, Tillack, Andreas, Townsend, Joshua P., Tubman, Norm M., Van Der Goetz, Brett, Vincent, Jordan E., Yang, D. ChangMo, Yang, Yubo, Zhang, Shuai, and Zhao, Luning
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Physics - Computational Physics ,Physics - Chemical Physics - Abstract
QMCPACK is an open source quantum Monte Carlo package for ab-initio electronic structure calculations. It supports calculations of metallic and insulating solids, molecules, atoms, and some model Hamiltonians. Implemented real space quantum Monte Carlo algorithms include variational, diffusion, and reptation Monte Carlo. QMCPACK uses Slater-Jastrow type trial wave functions in conjunction with a sophisticated optimizer capable of optimizing tens of thousands of parameters. The orbital space auxiliary field quantum Monte Carlo method is also implemented, enabling cross validation between different highly accurate methods. The code is specifically optimized for calculations with large numbers of electrons on the latest high performance computing architectures, including multicore central processing unit (CPU) and graphical processing unit (GPU) systems. We detail the program's capabilities, outline its structure, and give examples of its use in current research calculations. The package is available at http://www.qmcpack.org .
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- 2018
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33. Associations of accelerometer measured school- and non-school based physical activity and sedentary time with body mass index: IPEN Adolescent study
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Delfien Van Dyck, Anthony Barnett, Ester Cerin, Terry L. Conway, Irene Esteban-Cornejo, Erica Hinckson, Lukáš Rubín, Elaine Rush, Orna Baron-Epel, Kelli L. Cain, Lars Breum Christiansen, Mohammed Zakiul Islam, Josef Mitáš, Javier Molina-García, Adewale Oyeyemi, Harish Ranjani, Rodrigo Reis, Maria Paula Santos, Cindy Sit, Anna Timperio, Wan Abdul Manan Wan Muda, and James F. Sallis
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Adolescents ,Exercise ,Body weight ,Physical activity ,Public health ,Nutritional diseases. Deficiency diseases ,RC620-627 ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background This study examined the strength, shape and direction of associations of accelerometer-assessed overall, school- and non-school-based moderate-to-vigorous physical activity (MVPA) and sedentary time (ST) with BMI among adolescents across the world. Second, we examined whether these associations differed by study site and sex. Methods Cross-sectional data from the IPEN Adolescent study, an observational multi-country study, were used. Participants wore an accelerometer for seven days, reported height and weight, and completed a socio-demographic survey. In total, 4852 adolescents (46.6% boys), aged 11–19 years (mean age = 14.6, SD = 1.7 years) were included in the analyses, using generalized additive mixed models. Results Adolescents accumulated on average 41.3 (SD = 22.6) min/day of MVPA and 531.8 (SD = 81.1) min/day of ST, and the prevalence of overweight and obesity was 17.2% (IOTF), but these mean values differed by country. Linear negative associations of accelerometer-based MVPA and ST with standardized BMI scores and the likelihood of being overweight/obese were found. School-based ST and non-school-based MVPA were more strongly negatively associated to the outcomes than non-school based ST and school-based MVPA. Study site moderated the associations; adolescent sex did not. No curvilinear associations were found. Conclusions This multi-country study confirmed the importance of MVPA as a potential protective factor against overweight/obesity in adolescents. Non-school-based MVPA seemed to be the main driver of these associations. Unexpected results were found for ST, calling for further examination in methodologically sound international studies but using inclinometers or pressure sensors to provide more precise ST measures.
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- 2022
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34. Projector quantum Monte Carlo with averaged vs. explicit spin-orbit effects: applications to tungsten molecular systems
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Melton, Cody A., Bennett, M. Chandler, and Mitas, Lubos
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Physics - Chemical Physics ,Physics - Computational Physics - Abstract
We present a recently developed projector quantum Monte Carlo method for calculations of electronic structure in systems with spin-orbit interactions. The method solves for many-body eigenstates in the presence of spin-orbit using the fixed-phase approximation.The trial wave function is built from two-component spinors and explicit Jastrow correlation factors while the core electrons are eliminated by relativistic effective core potentials with explicit spin-orbit terms. We apply this method to WO and W$_2$ molecules that enable us to build multi-reference wave functions and analyze in detail the impact of both electron correlations and of spin-orbit terms. These developments open new opportunities for calculations of systems with significant spin-orbit effects by many-body quantum Monte Carlo methods., Comment: 19 pages, 2 figures, 2 tables
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- 2017
35. A New Generation of Effective Core Potentials for Correlated Calculations
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Bennett, M. Chandler, Melton, Cody A., Annaberdiyev, Abdulgani, Wang, Guangming, Shulenburger, Luke, and Mitas, Lubos
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Physics - Chemical Physics ,Condensed Matter - Materials Science ,Physics - Atomic Physics ,Physics - Computational Physics - Abstract
We outline ideas on desired properties for a new generation of effective core potentials (ECPs) that will allow valence-only calculations to reach the full potential offered by recent advances in many-body wave function methods. The key improvements include consistent use of correlated methods throughout ECP constructions and improved transferability as required for an accurate description of molecular systems over a range of geometries. The guiding principle is the isospectrality of all-electron and ECP Hamiltonians for a subset of valence states. We illustrate these concepts on a few first- and second-row atoms (B, C, N, O, S) and we obtain higher accuracy in transferability than previous constructions while using a semi-local ECPs with a small number of parameters. In addition, the constructed ECPs enable many-body calculations of valence properties with higher (or same) accuracy than their all-electron counterparts with uncorrelated cores. This implies that the ECPs include also some of the impacts of core-core and core-valence correlations on valence properties. The results open further prospects for ECP improvements and refinements., Comment: 14 pages, 14 figures, 11 tables
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- 2017
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36. Quantum Monte Carlo with variable spins: fixed-phase and fixed-node approximations
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Melton, Cody A. and Mitas, Lubos
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Physics - Computational Physics ,Condensed Matter - Materials Science ,Physics - Chemical Physics - Abstract
We study several aspects of the recently introduced fixed-phase spin-orbit diffusion Monte Carlo (FPSODMC) method, in particular, its relation to the fixed-node method and its potential use as a general approach for electronic structure calculations. We illustrate constructions of spinor-based wave functions with the full space-spin symmetry without assigning up or down spin labels to particular electrons, effectively "complexifying" even ordinary real-valued wave functions. Interestingly, with proper choice of the simulation parameters and spin variables, such fixed-phase calculations enable one to reach also the fixed-node limit. The fixed-phase solution provides a straightforward interpretation as the lowest bosonic state in a given effective potential generated by the many-body approximate phase. In addition, the divergences present at real wave function nodes are smoothed out to lower dimensionality, decreasing thus the variation of sampled quantities and making the sampling also more straightforward. We illustrate some of these properties on calculations of selected first-row systems that recover the fixed-node results with quantitatively similar levels of the corresponding biases. At the same time, the fixed-phase approach opens new possibilities for more general trial wave functions with further opportunities for increasing accuracy in practical calculations., Comment: 8 pages, 4 figures, 2 tables
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- 2017
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37. Adolescents' Physical Activity in Education Systems Varying in the Number of Weekly Physical Education Lessons
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Groffik, Dorota, Mitáš, Josef, Jakubec, Lukáš, Svozil, Zbynek, and Frömel, Karel
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Purpose: School physical activity (SPA) is a significant component of daily PA. We investigated differences in PA between boys and girls in two differing education systems--Poland and the Czech Republic--which have four and two physical education lessons (PELs) per week, respectively. Method: This project was conducted from 2012-2016 at 17 Polish and 23 Czech secondary schools (N = 921; mean age = 16.2 ± 0.7 years). ActiTrainer accelerometers were used to monitor participants' PA and heart rate during school days. Weekly PA was measured using pedometers. Subjective levels of weekly PA were self-reported on the International Physical Activity Questionnaire-long form. Results: The Polish education system enabled adolescents to meet the recommendations for moderate-to-vigorous PA more likely than did the Czech system. SPA also represented a higher portion of daily PA in the Polish (vs. Czech system); however, the differences in total daily step count between Polish and Czech adolescents were non-significant. SPA accounted for 30-37% of the daily PA (as measured by step count) of Polish girls (23-30% of Czech girls) and 28-39% of Polish boys (25-37% of Czech boys). Conclusions: Participation in PELs was associated with a higher rate of meeting SPA recommendations in both countries. Compared with the Czech Republic, more PELs in the Polish education system was associated with increased daily vigorous PA and a greater portion of SPA in daily PA. Differences in overall daily and weekly moderate-to-vigorous PA between Polish and Czech adolescents were non-significant.
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- 2020
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38. Do associations between objectively-assessed physical activity and neighbourhood environment attributes vary by time of the day and day of the week? IPEN adult study
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Cerin, Ester, Mitáš, Josef, Cain, Kelli L, Conway, Terry L, Adams, Marc A, Schofield, Grant, Sarmiento, Olga L, Reis, Rodrigo Siqueira, Schipperijn, Jasper, Davey, Rachel, Salvo, Deborah, Orzanco-Garralda, Rosario, Macfarlane, Duncan J, De Bourdeaudhuij, Ilse, Owen, Neville, Sallis, James F, and Van Dyck, Delfien
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Public Health ,Health Sciences ,Clinical Research ,Prevention ,Cancer ,Life on Land ,Accelerometry ,Adolescent ,Adult ,Aged ,Cities ,Cross-Sectional Studies ,Employment ,Environment Design ,Exercise ,Female ,Humans ,Male ,Middle Aged ,Periodicity ,Reproducibility of Results ,Residence Characteristics ,Sex Distribution ,Time ,Young Adult ,Built environment ,Geographic Information Systems ,International health ,Medical and Health Sciences ,Education ,Nutrition and dietetics ,Epidemiology ,Sports science and exercise - Abstract
BackgroundTo more accurately quantify the potential impact of the neighbourhood environment on adults' physical activity (PA), it is important to compare environment-PA associations between periods of the day or week when adults are more versus less likely to be in their neighbourhood and utilise its PA resources. We examined whether, among adults from 10 countries, associations between objectively-assessed neighbourhood environment attributes and moderate-to-vigorous physical activity (MVPA) varied by time of the day and day of the week. The secondary aim was to examine whether such associations varied by employment status, gender and city.MethodsThis cross-sectional study included 6,712 adults from 14 cities across 10 countries with ≥1 day of valid accelerometer-assessed MVPA and complete information on socio-demographic and objectively-assessed environmental characteristics within 0.5 and 1 km street-network buffers around the home. Accelerometer measures (MVPA min/h) were created for six time periods from early morning until late evening/night, for weekdays and weekend days separately. Associations were estimated using generalized additive mixed models.ResultsTime of the day, day of week, gender and employment status were significant moderators of environment-MVPA associations. Land use mix was positively associated with MVPA in women who were employed and in men irrespective of their employment status. The positive associations between MVPA and net residential density, intersection density and land use mix were stronger in the mornings of weekdays and the afternoon/evening periods of both weekdays and weekend days. Associations between number of parks and MVPA were stronger in the mornings and afternoon/evenings irrespective of day of the week. Public transport density showed consistent positive associations with MVPA during weekends, while stronger effects on weekdays were observed in the morning and early evenings.ConclusionsThis study suggests that space and time constraints in adults' daily activities are important factors that determine the impact of neighbourhood attributes on PA. Consideration of time-specific associations is important to better characterise the magnitude of the effects of the neighbourhood environment on PA. Future research will need to examine the contribution of built environment characteristics of areas surrounding other types of daily life centres (e.g., workplaces) to explaining adults' PA at specific times of the day.
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- 2017
39. A Quantum Monte Carlo Study of mono(benzene)TM and bis(benzene)TM Systems
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Bennett, M. Chandler, Kulahlioglu, Adem H., and Mitas, Lubos
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Physics - Chemical Physics ,Physics - Computational Physics - Abstract
We present a study of mono(benzene)TM and bis(benzene)TM systems, where TM={Mo,W}. We calculate the binding energies by quantum Monte Carlo (QMC) approaches and compare the results with other methods and available experiments. The orbitals for the determinantal part of each trial wave function were generated from several types of DFT in order to optimize for fixed-node errors. We estimate and compare the size of the fixed-node errors for both the Mo and W systems with regard to the electron density and degree of localization in these systems. For the W systems we provide benchmarking results of the binding energies, given that experimental data is not available.
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- 2016
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40. Fixed-node and fixed-phase approximations and their relationship to variable spins in quantum Monte Carlo
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Melton, Cody A. and Mitas, Lubos
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Physics - Computational Physics ,Condensed Matter - Materials Science ,Physics - Chemical Physics - Abstract
We compare the fixed-phase approximation with the better known, but closely related fixed-node approximation on several testing examples. We found that both approximations behave very similarly with the fixed-phase results being very close to the fixed-node method whenever nodes/phase were of high and comparable accuracy. The fixed-phase exhibited larger biases when the trial wave functions errors in the nodes/phase were intentionally driven to unrealistically large values. We also present a formalism that enables to describe wave functions with the full antisymmetry in spin-spatial degrees of freedom using our recently developed method for systems with spins as fully quantum variables. This opens new possibilities for simulations of fermionic systems in the fixed-phase approximation formalism., Comment: 6 pages, 2 figures
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- 2016
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41. Quantum Monte Carlo with Variable Spins
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Melton, Cody A., Bennett, M. Chandler, and Mitas, Lubos
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Physics - Computational Physics ,Condensed Matter - Materials Science ,Physics - Chemical Physics - Abstract
We investigate the inclusion of variable spins in electronic structure quantum Monte Carlo, with a focus on diffusion Monte Carlo with Hamiltonians that include spin-orbit interactions. Following our previous introduction of fixed-phase spin-orbit diffusion Monte Carlo (FPSODMC), we thoroughly discuss the details of the method and elaborate upon its technicalities. We present a proof for an upper-bound property for complex nonlocal operators, which allows for the implementation of T-moves to ensure the variational property. We discuss the time step biases associated with our particular choice of spin representation. Applications of the method are also presented for atomic and molecular systems. We calculate the binding energies and geometry of the PbH and Sn$_2$ molecules, as well as the electron affinities of the 6$p$ row elements in close agreement with experiments., Comment: 14 pages, 5 figures
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- 2016
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42. Associations between preference and participation in team sports: Physical activity promotion among adolescents
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Karel Frömel, Josef Mitáš, Dorota Groffik, Michal Kudláček, and Pavel Háp
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physical activity recommendations ,sports preferences ,IPAQ ,soccer ,volleyball ,Public aspects of medicine ,RA1-1270 - Abstract
BackgroundThe level of physical activity (PA) in adolescents is highly dependent on their PA preferences. PA preferences among adolescents are dominated by team PA, mostly team sports (TS). The aim of this study is to identify (a) the status and trends in the preferences of TS among Czech and Polish boys and girls in different educational and sports environments, and (b) the impact of the agreement between the preferred and simultaneously pursued TS on the structure of weekly PA and on the meeting of PA recommendations.MethodsThe research was carried out between 2009 and 2022 in the Czech Republic and Poland and included 2,939 boys and 4,427 girls aged 15–19 years. Preferences and participation in TS were identified using a PA preference questionnaire and weekly PA using the International Physical Activity Questionnaire-Long Form. Trends in TS preferences were analyzed over 27-year periods. The participants were divided into groups by agreement and disagreement between the preferred and pursued TS, and by agreement and disagreement between the preferences of TS and participation in organized TS.ResultsThroughout the 14-year study period, boys in both countries preferred soccer, whereas girls favored volleyball. Agreement between preferences and participation in TS increased vigorous PA in Czech and Polish boys and girls. The agreement between the preferences for TS and participation in organized TS had the most significant effect on increasing vigorous PA in Czech and Polish boys and girls and on total PA in boys in both countries. Those who preferred and participated in TS were more likely to meet PA recommendations.ConclusionRespecting the status and trends of TS preferences in supporting participation in TS increases adolescents' PA and their achievement of PA recommendations. Increasing active participation in organized TS among boys and girls may support regular PA and help eliminate the negative effects of the pandemic on adolescents' PA.
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- 2022
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43. How Czech Adolescents Perceive Their Physical Activity
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Ferdinand Salonna, Michal Vorlíček, Lukáš Rubín, Jana Vašíčková, and Josef Mitáš
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MVPA ,VPA ,social norms ,adolescents ,perception ,Pediatrics ,RJ1-570 - Abstract
Adolescence is a critical stage in the development of an individual’s physical activity (PA) habits and preferences. Adolescents’ perceptions of PA can influence their motivation to engage in PA and, consequently, their overall level of PA. Thus, our primary aim was to investigate whether Czech adolescents misperceive their peers’ PA. Our dataset comprised cross-sectional data on 1289 adolescents aged 11–15 years. PA was measured using self-reported items used in the HBSC study. To describe the gender and school grade differences in VPA, independent samples T, ANOVA, Mann–Whitney U, and Kruskal–Wallis H tests were performed. To analyze the effect of gender, school grade, school, and participants’ own PA on the underestimation of PA, binomial regression models were used. Our study points out that there is a discrepancy between self-perceived levels of PA and the perceived descriptive norms of peers’ PA. Adolescents underestimate the prevalence of sufficient PA, and thus perceived descriptive norms in PA as being worse than levels of own PA. These findings indicate room for targeted interventions based on social-norms-based approaches to increase the PA of adolescents or at least strengthen their actual positive behavior.
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- 2023
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44. Access to parks and physical activity: An eight country comparison
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Schipperijn, Jasper, Cerin, Ester, Adams, Marc A, Reis, Rodrigo, Smith, Graham, Cain, Kelli, Christiansen, Lars B, van Dyck, Delfien, Gidlow, Christopher, Frank, Lawrence D, Mitáš, Josef, Pratt, Michael, Salvo, Deborah, Schofield, Grant, and Sallis, James F
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Behavioral and Social Science ,Prevention ,Clinical Research ,Basic Behavioral and Social Science ,Obesity ,Cancer ,Metabolic and endocrine ,Cardiovascular ,Accelerometry ,Exercise ,GIS ,IPEN ,Leisure-time ,Multi-country ,Recreation ,accelerometry ,exercise ,leisure-time ,multi-country ,recreation ,Environmental Science and Management ,Forestry Sciences ,Forestry - Abstract
Several systematic reviews have reported mixed associations between access to parks and physical activity, and suggest that this is due to inconsistencies in the study methods or differences across countries. An international study using consistent methods is needed to investigate the association between access to parks and physical activity. The International Physical Activity and Environment Network (IPEN) Adult Study is a multi-country cross-sectional study using a common design and consistent methods. Accelerometer, survey and Geographic Information Systems (GIS) data for 6,181 participants from 12 cities in 8 countries (Belgium, Brazil, Czech Republic, Denmark, Mexico, New Zealand, UK, USA) were used to estimate the strength and shape of associations of 11 measures of park access (1 perceived and 10 GIS-based measures) with accelerometer-based moderate-to-vigorous physical activity (MVPA) and four types of self-reported leisure-time physical activity. Associations were estimated using generalized additive mixed models. More parks within 1 km from participants' homes were associated with greater leisure-time physical activity and accelerometer-measured MVPA. Respondents who lived in the neighborhoods with the most parks did on average 24 minutes more MVPA per week than those living in the neighborhoods with the lowest number of parks. Perceived proximity to a park was positively associated with multiple leisure-time physical activity outcomes. Associations were homogeneous across all cities studied. Living in neighborhoods with many parks could contribute with up to 1/6 of the recommended weekly Having multiple parks nearby was the strongest positive correlate of PA. To increase comparability and validity of park access measures, we recommend that researchers, planners and policy makers use the number of parks within 1 km travel distance of homes as an objective indicator for park access in relation to physical activity.
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- 2017
45. Epithelioid sarcoma with retained INI1 expression as a cause of a chronic leg ulcer
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Tatjana Maňáková, Jan Hojný, Martin Sedlář, Michal Vočka, Kristian Chrz, Petr Mitáš, Jiří Beneš, and Robert Holaj
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Medicine (General) ,R5-920 - Abstract
Epithelioid sarcoma is a rare soft-tissue sarcoma typically presenting itself as a subcutaneous or deep dermal mass in distal portions of the extremities of adolescents and young adults. They are frequently mistaken for ulcers, abscesses, or infected warts resistant to standard medical treatment. Patients often develop multiple local recurrences with subsequent metastases. We report a case of a 66-year-old patient with chronic leg ulcer who died of generalization of an epithelioid sarcoma.
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- 2022
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46. Spin-Orbit Interactions in Electronic Structure Quantum Monte Carlo
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Melton, Cody A., Zhu, Minyi, Guo, Shi, Ambrosetti, Alberto, Pederiva, Francesco, and Mitas, Lubos
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Condensed Matter - Strongly Correlated Electrons ,Physics - Atomic Physics ,Physics - Chemical Physics ,Physics - Computational Physics ,Quantum Physics - Abstract
We develop generalization of the fixed-phase diffusion Monte Carlo method for Hamiltonians which explicitly depend on particle spins such as for spin-orbit interactions. The method is formulated in zero variance manner and is similar to treatment of nonlocal operators in commonly used static- spin calculations. Tests on atomic and molecular systems show that it is very accurate, on par with the fixed-node method. This opens electronic structure quantum Monte Carlo methods to a vast research area of quantum phenomena in which spin-related interactions play an important role., Comment: Version 3: Some text additions. Results and conclusions unchanged. 5 pages, 2 figures
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- 2015
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47. Fixed-Node Diffusion Monte Carlo of Lithium Systems
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Rasch, Kevin and Mitas, Lubos
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Physics - Computational Physics ,Condensed Matter - Materials Science ,Physics - Chemical Physics - Abstract
We study lithium systems over a range of number of atoms, e.g., atomic anion, dimer, metallic cluster, and body-centered cubic crystal by the diffusion Monte Carlo method. The calculations include both core and valence electrons in order to avoid any possible impact by pseudo potentials. The focus of the study is the fixed-node errors, and for that purpose we test several orbital sets in order to provide the most accurate nodal hyper surfaces. We compare our results to other high accuracy calculations wherever available and to experimental results so as to quantify the the fixed-node errors. The results for these Li systems show that fixed-node quantum Monte Carlo achieves remarkably high accuracy total energies and recovers 97-99 % of the correlation energy., Comment: 7 pages, 4 figures
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- 2015
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48. Adolescents’ Participation in School Physical Activity before and during the COVID-19 Pandemic: An Educational Priority
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Karel Frömel, Dorota Groffik, and Josef Mitáš
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physical education ,school lifestyle ,types of motivation ,public health ,distance education ,Education - Abstract
The aim of this study was to identify the structure of weekly physical activity (PA) of adolescents with varying degrees of participation in school PA and motivation for PA before and during the COVID-19 pandemic. PA was assessed using the IPAQ-long form and motivation by using the MPAM-R questionnaire. Participants (N = 1257) were divided into groups involved and not involved in school PA. During the pandemic, the greatest decrease was observed in vigorous and moderate PA in boys (H = 98.52, p < 0.001, η2 = 0.179) and girls (H = 56.86, p < 0.001, η2 = 0.075) involved in school PA and in boys involved and not involved in school PA and in transportation PA. Physical education (PE) teachers should focus on promoting vigorous PA and home PA for boys and girls in the post-pandemic period. Student participation in school PA and an increase in overall PA should be supported through distance PE, which should be a mandatory part of PE programs and comprehensive school PA programs.
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- 2023
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49. Perceived Neighborhood Environmental Attributes Associated with Walking and Cycling for Transport among Adult Residents of 17 Cities in 12 Countries: The IPEN Study
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Kerr, Jacqueline, Emond, Jennifer A, Badland, Hannah, Reis, Rodrigo, Sarmiento, Olga, Carlson, Jordan, Sallis, James F, Cerin, Ester, Cain, Kelli, Conway, Terry, Schofield, Grant, Macfarlane, Duncan J, Christiansen, Lars B, Van Dyck, Delfien, Davey, Rachel, Aguinaga-Ontoso, Ines, Salvo, Deborah, Sugiyama, Takemi, Owen, Neville, Mitáš, Josef, and Natarajan, Loki
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Public Health ,Health Sciences ,Prevention ,Clinical Research ,Life on Land ,Adolescent ,Adult ,Aged ,Bicycling ,Cities ,Environment Design ,Esthetics ,Humans ,Middle Aged ,Residence Characteristics ,Safety ,Surveys and Questionnaires ,Transportation ,Walking ,Environmental Sciences ,Medical and Health Sciences ,Toxicology ,Biomedical and clinical sciences ,Environmental sciences ,Health sciences - Abstract
IntroductionPrevalence of walking and cycling for transport is low and varies greatly across countries. Few studies have examined neighborhood perceptions related to walking and cycling for transport in different countries. Therefore, it is challenging to prioritize appropriate built-environment interventions.ObjectivesThe aim of this study was to examine the strength and shape of the relationship between adults' neighborhood perceptions and walking and cycling for transport across diverse environments.MethodsAs part of the International Physical activity and Environment Network (IPEN) adult project, self-reported data were taken from 13,745 adults (18-65 years) living in physically and socially diverse neighborhoods in 17 cities across 12 countries. Neighborhood perceptions were measured using the Neighborhood Environment Walkability Scale, and walking and cycling for transport were measured using the International Physical Activity Questionnaire-Long Form. Generalized additive mixed models were used to model walking or cycling for transport during the last seven days with neighborhood perceptions. Interactions by city were explored.ResultsWalking-for-transport outcomes were significantly associated with perceived residential density, land use mix-access, street connectivity, aesthetics, and safety. Any cycling for transport was significantly related to perceived land use mix-access, street connectivity, infrastructure, aesthetics, safety, and perceived distance to destinations. Between-city differences existed for some attributes in relation to walking or cycling for transport.ConclusionsMany perceived environmental attributes supported both cycling and walking; however, highly walkable environments may not support cycling for transport. People appear to walk for transport despite safety concerns. These findings can guide the implementation of global health strategies.
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- 2016
50. Quantum Monte Carlo study of one-dimensional transition metal organometallic cluster systems and their suitability as spin filters
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Horváthová, L., Derian, R., Mitas, L., and Štich, I.
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Physics - Chemical Physics ,Condensed Matter - Materials Science - Abstract
We present calculations of electronic and magnetic structures of vanadium-benzene multidecker clusters V$_{n}$Bz$_{n+1}$ ($n$ = 1 - 3) using advanced quantum Monte Carlo methods. These and related systems have been identified as prospective spin filters in spintronic applications, assuming that their ground states are half-metallic ferromagnets. Although we find that magnetic properties of these multideckers are consistent with ferromagnetic coupling, their electronic structures do not appear to be half-metallic as previously assumed. In fact, they are ferromagnetic insulators with large and broadly similar $\uparrow$-/$\downarrow$-spin gaps. This makes the potential of these and related materials as spin filtering devices very limited, unless they are further modified or functionalized.
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- 2014
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