34 results on '"Misook Oh"'
Search Results
2. Targeted Degradation of Transcription Coactivator SRC‐1 through the N‐Degron Pathway
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Kyung Tae Hong, Do Hoon Kwon, Hyun-Suk Lim, Min Hyeon Shin, Jiwon Heo, Hoibin Jeong, Jun-Seok Lee, Misook Oh, G-One Ahn, Hyun Kyu Song, Yeongju Lee, and Ganesh A. Sable
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Cell type ,Ubiquitin-Protein Ligases ,Down-Regulation ,Antineoplastic Agents ,010402 general chemistry ,01 natural sciences ,Catalysis ,Nuclear Receptor Coactivator 1 ,Antigens, CD ,Cell Movement ,Cell Line, Tumor ,Neoplasms ,Animals ,Humans ,Neoplasm Invasiveness ,Amino Acid Sequence ,Receptor ,Mice, Inbred BALB C ,010405 organic chemistry ,Chemistry ,Macrophage Colony-Stimulating Factor ,Proteolysis targeting chimera ,General Medicine ,General Chemistry ,Cadherins ,Ligand (biochemistry) ,Up-Regulation ,0104 chemical sciences ,Cell biology ,Transcription Coactivator ,Cancer cell ,Biocatalysis ,Degron ,Peptides ,Protein Binding ,Signal Transduction ,Proto-oncogene tyrosine-protein kinase Src - Abstract
Aberrantly elevated steroid receptor coactivator-1 (SRC-1) expression and activity are strongly correlated with cancer progression and metastasis. Here we report, for the first time, the development of a proteolysis targeting chimera (PROTAC) that is composed of a selective SRC-1 binder linked to a specific ligand for UBR box, a unique class of E3 ligases recognizing N-degrons. We showed that the bifunctional molecule efficiently and selectively induced the degradation of SRC-1 in cells through the N-degron pathway. Importantly, given the ubiquitous expression of the UBR protein in most cells, PROTACs targeting the UBR box could degrade a protein of interest regardless of cell types. We also showed that the SRC-1 degrader significantly suppressed cancer cell invasion and migration in vitro and in vivo. Together, these results demonstrate that the SRC-1 degrader can be an invaluable chemical tool in the studies of SRC-1 functions. Moreover, our findings suggest PROTACs based on the N-degron pathway as a widely useful strategy to degrade disease-relevant proteins.
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- 2020
3. A Study on the Deregulation Process of the Japanese Guide-Interpreter Qualification: A Discussion of the Multiple Streams Framework
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Misook Oh
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Deregulation ,Process management ,Process (engineering) ,Computer science ,STREAMS ,computer.software_genre ,computer ,Interpreter - Published
- 2019
4. Bridged α-helix mimetic small molecules
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Sanket Das, Misook Oh, Hyun-Suk Lim, Yeongju Lee, Ji-Hoon Lee, Haeri Im, and Sihyun Ham
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Models, Molecular ,Stereochemistry ,Molecular Conformation ,010402 general chemistry ,01 natural sciences ,Catalysis ,Molecular conformation ,Small Molecule Libraries ,Jurkat Cells ,Materials Chemistry ,Humans ,010405 organic chemistry ,Chemistry ,Metals and Alloys ,General Chemistry ,Small molecule ,Heterocyclic Compounds, Bridged-Ring ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Covalent bond ,Helix ,Ceramics and Composites ,Myeloid Cell Leukemia Sequence 1 Protein ,Target protein ,Surface protein - Abstract
Herein, we report a strategy for generating conformationally restricted α-helix mimetic small molecules by introducing covalent bridges that limit rotation about the central axis of α-helix mimetics. We demonstrate that the bridged α-helix mimetics have enhanced binding affinity and specificity to the target protein due to the restricted conformation as well as extra interaction of the bridge with the protein surface.
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- 2019
5. A study on the change process for the guide-interpreter qualification system in Japan - Using advocacy coalition framework
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Misook Oh
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Process management ,Process (engineering) ,Computer science ,computer.software_genre ,computer ,Interpreter - Published
- 2018
6. A revised 1.6 Å structure of the GTPase domain of the Parkinson’s disease-associated protein LRRK2 provides insights into mechanisms
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Victoria A. Engel, Yangshin Park, Neo C. Hoang, Li Wan, Ruslan Sanishvili, Mu Wang, Alexandra Beilina, Mark R. Cookson, Jingling Liao, Misook Oh, Chun-Xiang Wu, Xylena Reed, Yuichiro Takagi, Steven M. Johnson, Mark Federici, Quyen Q. Hoang, and R. Jeremy Nichols
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0303 health sciences ,Mutation ,GTP' ,Kinase ,Chemistry ,Dimer ,GDP binding ,GTPase ,medicine.disease_cause ,LRRK2 ,Cell biology ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,G-domain ,medicine ,030217 neurology & neurosurgery ,030304 developmental biology - Abstract
Leucine-rich repeat kinase 2 (LRRK2) is a large 286 kDa multi-domain protein whose mutation is a common cause of Parkinson’s disease (PD). One of the common sites of familial PD-associated mutations occurs at residue Arg-1441 in the GTPase domain of LRRK2. Previously, we reported that the PD-associated mutation R1441H impairs the catalytic activity of the GTPase domain thereby traps it in a persistently "on" state. More recently, we reported that the GTPase domain of LRRK2 exists in a dynamic dimer-monomer equilibrium where GTP binding shifts it to the monomeric conformation while GDP binding shifts it back to the dimeric state. We also reported that all of the PD-associated mutations at Arg-1441, including R1441H, R1441C, and R1441G, impair the nucleotide-dependent dimer-monomer conformational dynamics of the GTPase domain. However, the mechanism of this nucleotide-dependent conformational dynamics and how it is impaired by the mutations at residue Arg-1441 remained unclear. Here, we report a 1.6 Å crystal structure of the GTPase domain of LRRK2. Our structure has revealed a dynamic switch region that can be differentially regulated by GTP and GDP binding. This nucleotide-dependent regulation is impaired when residue Arg-1441 is substituted with the PD-associated mutations due to the loss of its exquisite interactions consisting of two hydrogen bonds and a π-stacking interaction at the dimer interface.Significance StatementMutations in LRRK2 are associated with familial Parkinson’s disease, so understanding its mechanism of actions and how they are changed by the disease-associated mutations is important for developing therapeutic strategies. This paper describes an atomic structure of the G-domain of LRRK2 revealing that the conformational dynamics of the switch regions are potentially important for its normal function. It further shows that a disease-associated mutation could lock the G domain in a persistently active-like conformation, thus perturbing its normal function.
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- 2019
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7. Converting One-Face α-Helix Mimetics into Amphiphilic α-Helix Mimetics as Potent Inhibitors of Protein–Protein Interactions
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Wonpil Im, Hyun-Suk Lim, Hui Sun Lee, Hyun-Soo Kim, Ji-Hoon Lee, and Misook Oh
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Models, Molecular ,Molecular Sequence Data ,Crystallography, X-Ray ,010402 general chemistry ,01 natural sciences ,Protein Structure, Secondary ,Protein–protein interaction ,Solid-phase synthesis ,Amphiphile ,Side chain ,Humans ,Amino Acid Sequence ,Protein Interaction Maps ,Solid-Phase Synthesis Techniques ,010405 organic chemistry ,Chemistry ,Biological activity ,General Chemistry ,General Medicine ,Combinatorial chemistry ,0104 chemical sciences ,Drug Design ,Helix ,Myeloid Cell Leukemia Sequence 1 Protein ,Peptidomimetics ,Target protein - Abstract
Many biologically active α-helical peptides adopt amphiphilic helical structures that contain hydrophobic residues on one side and hydrophilic residues on the other side. Therefore, α-helix mimetics capable of mimicking such amphiphilic helical peptides should possess higher binding affinity and specificity to target proteins. Here we describe an efficient method for generating amphiphilic α-helix mimetics. One-face α-helix mimetics having hydrophobic side chains on one side was readily converted into amphiphilic α-helix mimetics by introducing appropriate charged residues on the opposite side. We also demonstrate that such two-face amphiphilic α-helix mimetics indeed show remarkably improved binding affinity to a target protein, compared to one-face hydrophobic α-helix mimetics. We believe that generating a large combinatorial library of these amphiphilic α-helix mimetics can be valuable for rapid discovery of highly potent and specific modulators of protein-protein interactions.
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- 2015
8. Regulator of Calcineurin 1 helps coordinate whole‐body metabolism and thermogenesis
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D. Bennett Grinsfelder, Ngoc Uyen Nhi Nguyen, Hesham A. Sadek, Valentina Parra, Christi Hull, Beverly A. Rothermel, Matthew J. Watt, Claire F. Jessup, Jana S. Burchfield, Tanvi Jakkampudi, Misook Oh, Alyce M. Martin, Rana K. Gupta, Dusan Matusica, D. Randy McMillan, Damien J. Keating, Israel Iyoke, David Rotter, Melanie April Pritchard, Heshan Peiris, Aldons J. Lusis, Cyndi R. Morales, and Brian W. Parks
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Male ,0301 basic medicine ,Adipose Tissue, White ,Proteolipids ,Regulator ,Muscle Proteins ,Adipose tissue ,Context (language use) ,White adipose tissue ,Biology ,Biochemistry ,Mice ,03 medical and health sciences ,Adrenergic Agents ,3T3-L1 Cells ,Adipocytes ,Genetics ,Animals ,Obesity ,RNA, Messenger ,Muscle, Skeletal ,Promoter Regions, Genetic ,Molecular Biology ,Uncoupling Protein 1 ,Metabolic Syndrome ,Mice, Knockout ,Calcineurin ,Calcium-Binding Proteins ,Intracellular Signaling Peptides and Proteins ,Cell Differentiation ,Thermogenesis ,Articles ,Adipose Tissue, Beige ,Lipid Metabolism ,Peroxisome Proliferator-Activated Receptor Gamma Coactivator 1-alpha ,Muscle, Striated ,Thermogenin ,Cell biology ,Cold Temperature ,Sarcolipin ,Metabolism ,030104 developmental biology ,Adipose Tissue ,Liver ,Female ,Insulin Resistance - Abstract
Increasing non‐shivering thermogenesis (NST), which expends calories as heat rather than storing them as fat, is championed as an effective way to combat obesity and metabolic disease. Innate mechanisms constraining the capacity for NST present a fundamental limitation to this approach, yet are not well understood. Here, we provide evidence that Regulator of Calcineurin 1 (RCAN1), a feedback inhibitor of the calcium‐activated protein phosphatase calcineurin (CN), acts to suppress two distinctly different mechanisms of non‐shivering thermogenesis (NST): one involving the activation of UCP1 expression in white adipose tissue, the other mediated by sarcolipin (SLN) in skeletal muscle. UCP1 generates heat at the expense of reducing ATP production, whereas SLN increases ATP consumption to generate heat. Gene expression profiles demonstrate a high correlation between Rcan1 expression and metabolic syndrome. On an evolutionary timescale, in the context of limited food resources, systemic suppression of prolonged NST by RCAN1 might have been beneficial; however, in the face of caloric abundance, RCAN1‐mediated suppression of these adaptive avenues of energy expenditure may now contribute to the growing epidemic of obesity.
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- 2018
9. A Chemical Inhibitor of the Skp2/p300 Interaction that Promotes p53-Mediated Apoptosis
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Ji-Hoon Lee, Heejo Moon, Hyun-Suk Lim, Yu Jung Hyun, and Misook Oh
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0301 basic medicine ,Apoptosis ,P300-CBP Transcription Factors ,Plasma protein binding ,01 natural sciences ,Catalysis ,Protein–protein interaction ,03 medical and health sciences ,SKP2 ,p300-CBP Transcription Factors ,Cell Cycle Protein ,S-Phase Kinase-Associated Proteins ,Inhibitor of apoptosis domain ,biology ,010405 organic chemistry ,Chemistry ,General Chemistry ,General Medicine ,Cell cycle ,0104 chemical sciences ,Ubiquitin ligase ,030104 developmental biology ,Biochemistry ,biology.protein ,Tumor Suppressor Protein p53 ,Protein Binding - Abstract
Skp2 is thought to have two critical roles in tumorigenesis. As part of the SCF(Skp2) ubiquitin ligase, Skp2 drives the cell cycle by mediating the degradation of cell cycle proteins. Besides the proteolytic activity, Skp2 also blocks p53-mediated apoptosis by outcompeting p53 for binding p300. Herein, we exploit the Skp2/p300 interaction as a new target for Skp2 inhibition. An affinity-based high-throughput screen of a combinatorial cyclic peptoid library identified an inhibitor that binds to Skp2 and interferes with the Skp2/p300 interaction. We show that antagonism of the Skp2/p300 interaction by the inhibitor leads to p300-mediated p53 acetylation, resulting in p53-mediated apoptosis in cancer cells, without affecting Skp2 proteolytic activity. Our results suggest that inhibition of the Skp2/p300 interaction has a great potential as a new anticancer strategy, and our Skp2 inhibitor can be developed as a chemical probe to delineate Skp2 non-proteolytic function in tumorigenesis.
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- 2015
10. Targeted Inhibition of the NCOA1/STAT6 Protein-Protein Interaction
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Sin-Hyeog Im, Ji-Hoon Lee, Hyun-Suk Lim, Min Kyung Shin, Sung-Min Hwang, Jaeyoung Song, Heeseok Yoon, Misook Oh, and Yeongju Lee
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0301 basic medicine ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Catalysis ,03 medical and health sciences ,Mice ,Colloid and Surface Chemistry ,Nuclear Receptor Coactivator 1 ,Coactivator ,Animals ,Humans ,Amino Acid Sequence ,Protein Interaction Maps ,Transcription factor ,Peptide sequence ,STAT6 ,Chemistry ,Activator (genetics) ,General Chemistry ,0104 chemical sciences ,Cell biology ,Nuclear receptor coactivator 1 ,Molecular Docking Simulation ,030104 developmental biology ,HEK293 Cells ,A549 Cells ,Drug Design ,Nuclear receptor coactivator 2 ,STAT protein ,Peptides ,STAT6 Transcription Factor - Abstract
The complex formation between transcription factors (TFs) and coactivator proteins is required for transcriptional activity, and thus disruption of aberrantly activated TF/coactivator interactions could be an attractive therapeutic strategy. However, modulation of such protein-protein interactions (PPIs) has proven challenging. Here we report a cell-permeable, proteolytically stable, stapled helical peptide directly targeting nuclear receptor coactivator 1 (NCOA1), a coactivator required for the transcriptional activity of signal transducer and activator of transcription 6 (STAT6). We demonstrate that this stapled peptide disrupts the NCOA1/STAT6 complex, thereby repressing STAT6-mediated transcription. Furthermore, we solved the first crystal structure of a stapled peptide in complex with NCOA1. The stapled peptide therefore represents an invaluable chemical probe for understanding the precise role of the NCOA1/STAT6 interaction and an excellent starting point for the development of a novel class of therapeutic agents.
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- 2017
11. Potential pharmacological chaperones targeting cancer-associated MCL-1 and Parkinson disease-associated α-synuclein
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Wei-wei Wang, Misook Oh, Ji-Hoon Lee, Hyun-Suk Lim, Woo Sirl Lee, Quyen Q. Hoang, Christopher Burlak, Wonpil Im, and Hui Sun Lee
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Alpha-synuclein ,Multidisciplinary ,Drug discovery ,Cell ,Chemical biology ,Parkinson Disease ,Disease ,Biological Sciences ,Biology ,Jurkat cells ,Small molecule ,Cell biology ,Myeloid Cell Leukemia Sequence 1 Protein ,Jurkat Cells ,chemistry.chemical_compound ,medicine.anatomical_structure ,chemistry ,Commentaries ,Neoplasms ,Drug Discovery ,alpha-Synuclein ,medicine ,Humans ,Molecular Chaperones - Abstract
Pharmacological chaperones are small molecules that bind to proteins and stabilize them against thermal denaturation or proteolytic degradation, as well as assist or prevent certain protein-protein assemblies. These activities are being exploited for the development of treatments for diseases caused by protein instability and/or aberrant protein-protein interactions, such as those found in certain forms of cancers and neurodegenerative diseases. However, designing or discovering pharmacological chaperones for specific targets is challenging because of the relatively featureless protein target surfaces, the lack of suitable chemical libraries, and the shortage of efficient high-throughput screening methods. In this study, we attempted to address all these challenges by synthesizing a diverse library of small molecules that mimic protein α-helical secondary structures commonly found in protein-protein interaction surfaces. This was accompanied by establishing a facile "on-bead" high-throughput screening method that allows for rapid and efficient discovery of potential pharmacological chaperones and for identifying novel chaperones/inhibitors against a cancer-associated protein, myeloid cell leukemia 1 (MCL-1), and a Parkinson disease-associated protein, α-synuclein. Our data suggest that the compounds and methods described here will be useful tools for the development of pharmaceuticals for complex-disease targets that are traditionally deemed "undruggable."
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- 2014
12. Amot130 Adapts Atrophin-1 Interacting Protein 4 to Inhibit Yes-associated Protein Signaling and Cell Growth
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Hyun-Suk Lim, Jacob J. Adler, Ross Cocklin, Misook Oh, Mark G. Goebl, William P. Ranahan, Brigitte L. Heller, Lauren R. Bringman, Clark D. Wells, and Robert J. Ingham
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Transcription, Genetic ,Ubiquitin-Protein Ligases ,Protein Serine-Threonine Kinases ,Biochemistry ,WW domain ,Ubiquitin ,Humans ,education ,Molecular Biology ,Adaptor Proteins, Signal Transducing ,Cell Proliferation ,Hippo signaling pathway ,education.field_of_study ,biology ,Protein Stability ,Cell growth ,Microfilament Proteins ,Membrane Proteins ,Signal transducing adaptor protein ,YAP-Signaling Proteins ,Cell Biology ,Phosphoproteins ,Ubiquitin ligase ,Cell biology ,Repressor Proteins ,HEK293 Cells ,Angiomotins ,Gene Expression Regulation ,Proteolysis ,biology.protein ,Intercellular Signaling Peptides and Proteins ,Atrophin-1 ,Signal transduction ,Signal Transduction ,Transcription Factors - Abstract
The adaptor protein Amot130 scaffolds components of the Hippo pathway to promote the inhibition of cell growth. This study describes how Amot130 through binding and activating the ubiquitin ligase AIP4/Itch achieves these effects. AIP4 is found to bind and ubiquitinate Amot130 at residue Lys-481. This both stabilizes Amot130 and promotes its residence at the plasma membrane. Furthermore, Amot130 is shown to scaffold a complex containing overexpressed AIP4 and the transcriptional co-activator Yes-associated protein (YAP). Consequently, Amot130 promotes the ubiquitination of YAP by AIP4 and prevents AIP4 from binding to large tumor suppressor 1. Amot130 is found to reduce YAP stability. Importantly, Amot130 inhibition of YAP dependent transcription is reversed by AIP4 silencing, whereas Amot130 and AIP4 expression interdependently suppress cell growth. Thus, Amot130 repurposes AIP4 from its previously described role in degrading large tumor suppressor 1 to the inhibition of YAP and cell growth.
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- 2013
13. A Recombination Silencer that Specifies Heterochromatin Positioning and Ikaros Association in the Immunoglobulin κ Locus
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Jerry W. Shay, Zhe Liu, Piotr Widlak, Misook Oh, Fei Xiao, Mee Young Chang, Shuyu Li, Ying Zou, and William T. Garrard
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Yeast artificial chromosome ,Heterochromatin ,Immunology ,Repressor ,Mice, Transgenic ,Locus (genetics) ,Biology ,Germline ,Ikaros Transcription Factor ,Immunoglobulin kappa-Chains ,Mice ,Imaging, Three-Dimensional ,Animals ,Gene Rearrangement, B-Lymphocyte, Light Chain ,Gene silencing ,Immunology and Allergy ,Gene Silencing ,Regulatory Elements, Transcriptional ,MOLIMMUNO ,Gene ,In Situ Hybridization, Fluorescence ,Recombination, Genetic ,Genetics ,Genes, Immunoglobulin ,Reverse Transcriptase Polymerase Chain Reaction ,Allelic exclusion ,Infectious Diseases ,CELLIMMUNO - Abstract
Allelic exclusion ensures that individual B lymphocytes produce only one kind of antibody molecule. Previous studies have shown that allelic exclusion of the mouse Igkappa locus occurs by the combination of monoallelic silencing and a low level of monoallelic activation for rearrangement combined with a negative feedback loop blocking additional functional rearrangements. Using yeast artificial chromosome-based single-copy isotransgenic mice, we have identified a cis-acting element that negatively regulates rearrangement in this locus, specifically in B cells. The element, termed Sis, resides in the V-J intervening sequence. Sis specifies the targeting of Igkappa transgenes in pre-B and B cells to centromeric heterochromatin and associates with Ikaros, a repressor protein that also colocalizes with centromeric heterochromatin. Significantly, these are hallmarks of silenced endogenous germline Igkappa genes in B cells. These results lead us to propose that Sis participates in the monoallelic silencing aspect of allelic exclusion regulation.
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- 2006
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14. Calcineurin Is Necessary for the Maintenance but Not Embryonic Development of Slow Muscle Fibers
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Beverly A. Rothermel, John M. Shelton, Igor I. Rybkin, Victoria Copeland, Eric N. Olson, Eva van Rooij, James A. Richardson, Rhonda S Bassel-Duby, Michael P. Czubryt, Leon J. De Windt, Misook Oh, and Joseph A. Hill
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Genetically modified mouse ,Transgene ,Phosphatase ,Embryonic Development ,Muscle Proteins ,Cre recombinase ,Mice, Transgenic ,Biology ,Mice ,Contractile Proteins ,Myosin ,medicine ,Animals ,Muscle, Skeletal ,Molecular Biology ,Myoglobin ,Calcineurin ,Intracellular Signaling Peptides and Proteins ,Wild type ,Skeletal muscle ,Cell Biology ,Molecular biology ,Mitochondria ,Cell biology ,DNA-Binding Proteins ,Muscle Fibers, Slow-Twitch ,medicine.anatomical_structure ,Signal Transduction - Abstract
Skeletal muscles are a mosaic of slow and fast twitch myofibers. During embryogenesis, patterns of fiber type composition are initiated that change postnatally to meet physiological demand. To examine the role of the protein phosphatase calcineurin in the initiation and maintenance of muscle fiber types, we used a "Flox-ON" approach to obtain muscle-specific overexpression of the modulatory calcineurin-interacting protein 1 (MCIP1/DSCR1), an inhibitor of calcineurin. Myo-Cre transgenic mice with early skeletal muscle-specific expression of Cre recombinase were used to activate the Flox-MCIP1 transgene. Contractile components unique to type 1 slow fibers were absent from skeletal muscle of adult Myo-Cre/Flox-MCIP1 mice, whereas oxidative capacity, myoglobin content, and mitochondrial abundance were unaltered. The soleus muscles of Myo-Cre/Flox-MCIP1 mice fatigued more rapidly than the wild type as a consequence of the replacement of the slow myosin heavy chain MyHC-1 with a fast isoform, MyHC-2A. MyHC-1 expression in Myo-Cre/Flox-MCIP1 embryos and early neonates was normal. These results demonstrate that developmental patterning of slow fibers is independent of calcineurin, while the maintenance of the slow-fiber phenotype in the adult requires calcineurin activity.
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- 2005
15. RTP1, a rat homologue of adenovims E1A‐associated Protein BS69, interacts with DNA topoisomerase II
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Misook Oh, Seung Hwan Hong, Jeong‐Ho Yoon, Sang Dai Park, Geun Bae Rha, and Yang‐II Sunwoo
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Zinc finger ,Leucine zipper ,Biochemistry ,biology ,Transcription (biology) ,Binding protein ,Topoisomerase ,biology.protein ,Transcriptional regulation ,Gene ,Protein–protein interaction - Abstract
Topoisomearse II is an essential enzyme in all organisms with several independent roles in DNA metabolism. Recently, it has been demonstrated that the C‐terminal region of topoisomerases II is associated with heterologous protein‐protein interactions in human and yeast. In this study, we identified that RTP1, a rat homologue of E1A binding protein BS69, is another topoisomerae II interacting protein by yeast two‐hybrid screening. RTP1 has an E1A‐binding domain and a MYND motif, which are known to be required for transcriptional regulation by binding to other proteins and interaction with the leucine zipper motif of topoisomerase D. The physical interaction between RTP1 and topoisomerase IIa was examined by GST pull‐down assay in vitro. The expression level of RTP1 peaks in S phase as that of topoisomerase IIa. These results suggest that the interaction between topoisomerase IIa and RTP1 might play an important role in regulating the transcription of genes involved in DNA metabolism in higher eukaryotes.
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- 2002
16. Functional design of cluster-based resource distribution for electric vehicle sharing systems
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Yongtae Ko, Junghoon Lee, Misook Oh, Soo-Young Kim, and Young-In Cho
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Service (systems architecture) ,Fitness function ,business.product_category ,Computer science ,Distributed computing ,Real-time computing ,Genetic algorithm ,Electric vehicle ,Functional design ,business ,Cluster analysis ,Time complexity - Abstract
This paper presents a cluster-based resource distribution scheme for electric vehicle sharing systems, aiming at overcoming time complexity and enhancing the service ratio. A clustering plan is encoded by an integer-valued vector to apply genetic algorithms. Specific vector elements are dedicated to intermediary stations while negative numbers separate stations. The number of intermediary stations through which vehicles move across cluster domains, is given in priori and genetic operators make better the quality of the solution generation by generation. The fitness function gives precedence to a clustering plan having even load for each cluster. Next, the local relocation scheduler also runs a genetic algorithm to match overflow and underflow stations, trying to minimize the relocation distance, or the distance taken by a service vehicle.
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- 2014
17. Sp1 mediates cell proliferation-dependent regulation of rat DNA topoisomerase IIα gene promoter
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Misook Oh, Se Ho Park, Sang Dai Park, Jeong Ho Yoon, Geun Bae Rha, Jeong Kee Kim, Rho Hyun Seong, and Seung Hwan Hong
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Plasmid ,Cell growth ,Transcription (biology) ,CAAT box ,Promoter ,Luciferase ,Cell Biology ,Biology ,Molecular Biology ,Biochemistry ,Mitosis ,Molecular biology ,Gene - Abstract
DNA topoisomerase IIalpha (topo IIalpha) is an essential nuclear enzyme required for chromosome segregation during mitosis. Consistent with its critical role in cell division is the fact that the expression of the gene for topo IIalpha is strongly regulated by the proliferation state of cells. Using a transient expression system, we determined the contribution of putative cis-acting elements in its promoter region to its basal level and cell proliferation-dependent transcription. Experiments with 5' and/or 3' serial deletion and site-directed mutation revealed that (1) maximal promoter activity resides in the fragment extending to position -663 bp from the ATG initiation codon, (2) minimal promoter activity is harboured at -195 bp, (3) the defined minimal promoter contains only two putative elements, inverted CCAAT box 4 (ICB4) (-166 to -162 bp) and the most proximal GC-rich box in the promoter (GC2) (-149 to -143 bp), and (4) ICB4 is most important in the basal-level transcription of the gene for rat topo IIalpha. The luciferase activities of the mutated reporter plasmids in G(0)-arrested and exponentially growing cells showed that proliferation-specific regulation is controlled mainly by GC2. Electrophoretic mobility-shift assays indicated that Sp1 binds specifically to the GC2 site. The extent of DNA-protein complex formation increases after the stimulation of cells to proliferate. These results indicate that the increased binding activity of Sp1 to GC2 is important in the up-regulation of the gene for topo IIalpha in growing cells.
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- 1999
18. Production of IL-12 from gene modified human dermal fibroblasts: A preclinical study for IL-12 cancer gene therapy
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Michael T. Lotze, Won Seog Kim, Chan H. Park, Sun-Young Kim, Chaehwa Park, Misook Oh, Jung-Hyun Yang, Won-Ki Kang, and Keunchil Park
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integumentary system ,Clinical Biochemistry ,Immunology ,Interleukin 12 ,Molecular Medicine ,Cancer gene ,Biology ,Molecular Biology ,Biochemistry ,Gene - Abstract
Production of IL-12 from gene modified human dermal fibroblasts: A preclinical study for IL-12 cancer gene therapy
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- 1997
19. Mechanical Unloading Activates FoxO3 to Trigger Bnip3‐Dependent Cardiomyocyte Atrophy
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John M. Shelton, Nan Jiang, Beverly A. Rothermel, Andrew G Blagg, Gerald W. Dorn, Kai-Chun Yang, Xiang Luo, Raj B. Gondalia, Janet L. Johnstone, Dian J. Cao, Thomas G. Gillette, Joseph A. Hill, and Misook Oh
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autophagy ,Proteasome Endopeptidase Complex ,medicine.medical_specialty ,Mice, Transgenic ,030204 cardiovascular system & hematology ,Sarcomere ,Mitochondrial Proteins ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Atrophy ,Internal medicine ,medicine ,Animals ,Humans ,Myocyte ,Myocytes, Cardiac ,Ventricular remodeling ,Cardiac muscle atrophy ,Original Research ,030304 developmental biology ,Heart Failure ,0303 health sciences ,Ventricular Remodeling ,business.industry ,cardiac hypertrophy ,Myocardium ,Forkhead Box Protein O3 ,Autophagy ,Cardiac muscle ,Membrane Proteins ,Ubiquitin-Protein Ligase Complexes ,Forkhead Transcription Factors ,medicine.disease ,Cell biology ,Disease Models, Animal ,Endocrinology ,medicine.anatomical_structure ,FoxO3 ,FOXO3 ,Heart Transplantation ,Heart-Assist Devices ,cardiac atrophy ,Cardiology and Cardiovascular Medicine ,business ,Signal Transduction - Abstract
Background Mechanical assist device therapy has emerged recently as an important and rapidly expanding therapy in advanced heart failure, triggering in some patients a beneficial reverse remodeling response. However, mechanisms underlying this benefit are unclear. Methods and Results In a model of mechanical unloading of the left ventricle, we observed progressive myocyte atrophy, autophagy, and robust activation of the transcription factor FoxO3, an established regulator of catabolic processes in other cell types. Evidence for FoxO3 activation was similarly detected in unloaded failing human myocardium. To determine the role of FoxO3 activation in cardiac muscle in vivo, we engineered transgenic mice harboring a cardiomyocyte‐specific constitutively active FoxO3 mutant ( caFoxO3 flox ;α MHC‐Mer‐Cre‐Mer ). Expression of caFoxO3 triggered dramatic and progressive loss of cardiac mass, robust increases in cardiomyocyte autophagy, declines in mitochondrial biomass and function, and early mortality. Whereas increases in cardiomyocyte apoptosis were not apparent, we detected robust increases in Bnip3 (Bcl2/adenovirus E1B 19‐ kD a interacting protein 3), an established downstream target of FoxO3. To test the role of Bnip3, we crossed the caFoxO3 flox ;α MHC‐Mer‐Cre‐Mer mice with Bnip3‐null animals. Remarkably, the atrophy and autophagy phenotypes were significantly blunted, yet the early mortality triggered by FoxO3 activation persisted. Rather, declines in cardiac performance were attenuated by proteasome inhibitors. Consistent with involvement of FoxO3‐driven activation of the ubiquitin‐proteasome system, we detected time‐dependent activation of the atrogenes program and sarcomere protein breakdown. Conclusions In aggregate, these data point to FoxO3, a protein activated by mechanical unloading, as a master regulator that governs both the autophagy‐lysosomal and ubiquitin‐proteasomal pathways to orchestrate cardiac muscle atrophy.
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- 2013
20. Novel Pyrrolopyrimidine-Based α-Helix Mimetics: Cell-Permeable Inhibitors of Protein-Protein Interactions
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Qi Zhang, Sunhwan Jo, Sergio C. Chai, Ji Hoon Lee, Hua Lu, Wonpil Im, Hyun-Suk Lim, and Misook Oh
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Models, Molecular ,MDMX ,Plasma protein binding ,Biochemistry ,Catalysis ,Article ,Permeability ,Protein Structure, Secondary ,Protein–protein interaction ,Colloid and Surface Chemistry ,Protein structure ,Proto-Oncogene Proteins c-mdm2 ,Biomimetic Materials ,Cell Line, Tumor ,Humans ,Pyrroles ,Amino Acid Sequence ,Chemistry ,General Chemistry ,Small molecule ,Combinatorial chemistry ,High-Throughput Screening Assays ,Pyrimidines ,Drug Design ,Tumor Suppressor Protein p53 ,Divergent synthesis ,Fluorescence anisotropy ,Protein Binding - Abstract
There is considerable interest in developing nonpeptidic, small molecule α-helix mimetics to disrupt α-helix-mediated protein-protein interactions. Herein, we report the design of a novel pyrrolopyrimidine-based scaffold for such α-helix mimetics with increased conformational rigidity. We also developed a facile solid phase synthetic route, which is amenable to divergent synthesis of a large library. Using a fluorescence polarization-based assay, we identified cell permeable, dual MDMX/MDM2 inhibitors, demonstrating that the designed molecules can act as α-helix mimetics.
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- 2011
21. Sustained hemodynamic stress disrupts normal circadian rhythms in calcineurin-dependent signaling and protein phosphorylation in the heart
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James A. Bibb, David Rotter, John M. Shelton, Beverly A. Rothermel, Misook Oh, Joseph A. Hill, Victoria Copeland, Devanjan Sikder, Pavan K. Battiprolu, Erik Bush, D. Bennett Grinsfelder, Nita Sachan, and Asim Dey
- Subjects
Male ,medicine.medical_specialty ,Physiology ,Period (gene) ,Heart Ventricles ,Muscle Proteins ,Biology ,Article ,Mice ,Stress, Physiological ,Internal medicine ,Protein Phosphatase 1 ,medicine ,Animals ,Protein phosphorylation ,Circadian rhythm ,Phosphorylation ,Pressure overload ,Heart Failure ,NFATC Transcription Factors ,Calcineurin ,Calcium-Binding Proteins ,Hemodynamics ,Intracellular Signaling Peptides and Proteins ,Proteins ,NFAT ,Phospholamban ,Circadian Rhythm ,Mice, Inbred C57BL ,Disease Models, Animal ,Endocrinology ,Cardiology and Cardiovascular Medicine ,Signal Transduction - Abstract
Rationale: Despite overwhelming evidence of the importance of circadian rhythms in cardiovascular health and disease, little is known regarding the circadian regulation of intracellular signaling pathways controlling cardiac function and remodeling. Objective: To assess circadian changes in processes dependent on the protein phosphatase calcineurin, relative to changes in phosphorylation of cardiac proteins, in normal, hypertrophic, and failing hearts. Methods and Results: We found evidence of large circadian oscillations in calcineurin-dependent activities in the left ventricle of healthy C57BL/6 mice. Calcineurin-dependent transcript levels and nuclear occupancy of the NFAT (nuclear factor of activated T cells) regularly fluctuated as much as 20-fold over the course of a day, peaking in the morning when mice enter a period of rest. Phosphorylation of the protein phosphatase 1 inhibitor 1 (I-1), a direct calcineurin substrate, and phospholamban, an indirect target, oscillated directly out of phase with calcineurin-dependent signaling. Using a surgical model of cardiac pressure overload, we found that although calcineurin-dependent activities were markedly elevated, the circadian pattern of activation was maintained, whereas, oscillations in phospholamban and I-1 phosphorylation were lost. Changes in the expression of fetal gene markers of heart failure did not mirror the rhythm in calcineurin/NFAT activation, suggesting that these may not be direct transcriptional target genes. Cardiac function in mice subjected to pressure overload was significantly lower in the morning than in the evening when assessed by echocardiography. Conclusions: Normal, opposing circadian oscillations in calcineurin-dependent activities and phosphorylation of proteins that regulate contractility are disrupted in heart failure.
- Published
- 2011
22. The CCAAT/enhancer binding protein beta (C/EBPbeta) cooperates with NFAT to control expression of the calcineurin regulatory protein RCAN1-4
- Author
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Joseph A. Hill, Beverly A. Rothermel, Robert D. Gerard, Misook Oh, and Asim Dey
- Subjects
Male ,Molecular Sequence Data ,Muscle Proteins ,Biology ,Biochemistry ,Cell Line ,Mice ,Enhancer binding ,Calcium-binding protein ,Animals ,Molecular Biology ,Transcription factor ,Regulation of gene expression ,Cell Nucleus ,Binding Sites ,Ccaat-enhancer-binding proteins ,Base Sequence ,NFATC Transcription Factors ,CCAAT-Enhancer-Binding Protein-beta ,Calcineurin ,Calcium-Binding Proteins ,Intracellular Signaling Peptides and Proteins ,NFAT ,Cell Biology ,Molecular biology ,Mice, Inbred C57BL ,Gene Expression Regulation ,Chromatin immunoprecipitation ,Signal Transduction ,Subcellular Fractions - Abstract
Regulator of calcineurin 1 (RCAN1) inhibits the protein phosphatase calcineurin and is required for appropriate immune responses, synaptic plasticity, vascular tone, angiogenesis, and cardiac remodeling. Expression of the RCAN1-4 isoform is under the control of the calcineurin-responsive transcription factor NFAT. Typically, NFATs act in cooperation with other transcription factors to achieve maximal activation of gene expression. In this study, we identify the CCAAT/enhancer binding protein beta (C/EBPbeta) as an NFAT binding partner that cooperates with NFAT to regulate RCAN1-4 expression. Numerous C/EBPbeta binding sites are conserved in the RCAN1-4 proximal promoter. Overexpression of C/EBPbeta increased activity of both the endogenous mouse Rcan1-4 gene and a human RCAN1-4 luciferase reporter. Binding of C/EBPbeta to multiple sites in the promoter was verified using electrophoretic mobility shift assays and chromatin immunoprecipitation. A direct interaction between C/EBPbeta and NFAT was demonstrated by co-immunoprecipitation of proteins and complex formation at NFAT-C/EBPbeta composite sites. Depletion of endogenous C/EBPbeta decreased maximal activation of RCAN1-4 expression by calcineurin, whereas inhibition of calcineurin did not alter the ability of C/EBPbeta to activate RCAN1-4 expression. Together, these findings suggest that calcineurin/NFAT activation of RCAN1-4 expression is in part dependent upon C/EBPbeta, whereas activation by C/EBPbeta is not dependent on calcineurin and may provide a calcineurin-independent pathway for regulating RCAN1-4 expression. Importantly, nuclear localization, C/EBPbeta DNA binding activity and occupancy of the Rcan1-4 promoter increased in mouse models of heart failure demonstrating in vivo activation of this pathway to regulate Rcan1-4 expression and ultimately shape the dynamics of calcineurin-dependent signaling.
- Published
- 2010
23. Abstract 3442: Normal Circadian Rhythms In Calcineurin-dependent Signaling And Protein Phosphorylation Are Disrupted In Heart Failure
- Author
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Asim Dey, Nita Sachan, Misook Oh, Joseph A Hill, and Beverly A Rothermel
- Subjects
Physiology (medical) ,Cardiology and Cardiovascular Medicine - Abstract
Many important cardiovascular factors, including metabolism, heart rate, blood pressure, and hormone release, oscillate over a 24-hour period. In humans, the incidents of adverse cardiac events, such as myocardial infarction, and ventricular tachycardia vary according to the time of the day. Despite overwhelming evidence of the importance of circadian rhythms in cardiovascular health and disease, little is known regarding the circadian regulation of intracellular signaling pathways involved in normal cardiac function and heart failure. Here we show that there are large circadian oscillations in calcineurin-dependent activities in normal, healthy mouse hearts. This finding is remarkable because activation of the protein phosphatase calcineurin has primarily been thought of as a pathological process driving cardiac hypertrophy and failure. In the hearts of wild type C57BL6 mice there was a 17-fold change in mRNA levels for the calcineurin/NFAT target gene RCAN1.4 that peaked in the early morning at the beginning of the animal’s sedentary phase. Nuclear occupancy of calcineurin-regulated transcription factor NFAT coincided with the changes in mRNA suggesting that circadian changes in calcineurin activity underlie these oscillations. Phosphorylation of the protein phosphatase 1 inhibitor 1 (I-1), a direct calcineurin substrate, and phospholamban (PLB), an indirect target, oscillated directly out of phase with calcineurin-dependent signaling. We propose that temporal separation of peak kinase and phosphatase activities form interdependent feedback loops helping coordinate cardiac function. In pressure overload-induced failing hearts, oscillations in calcineurin-dependent transcription persisted, however both the peak and trough activities were markedly elevated compared to control hearts. In contrast, oscillations in PLB and I-1 phosphorylation were largely lost in failing hearts where phosphorylation of I-1 could no longer be detected and PLB phosphorylation remained elevated throughout. Together, our results suggest that the normal relationships between circadian oscillations in protein phosphorylation and dephosphorylation are disrupted in heart failure. This research has received full or partial funding support from the American Heart Association, AHA South Central Affiliate (Arkansas, New Mexico, Oklahoma & Texas).
- Published
- 2008
24. Foxo transcription factors blunt cardiac hypertrophy by inhibiting calcineurin signaling
- Author
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David J. Morris, Misook Oh, Asim Dey, Joseph A. Hill, Guangrong Lu, Beverly A. Rothermel, Na Wang, Jun Cheng, Yan G. Ni, Diego H. Castrillon, Kambeez Berenji, Nita Sachan, and Robert D. Gerard
- Subjects
Male ,medicine.medical_specialty ,Muscle Proteins ,FOXO1 ,Cardiomegaly ,Nerve Tissue Proteins ,Biology ,Article ,Rats, Sprague-Dawley ,Mice ,Phosphatidylinositol 3-Kinases ,NFAT Pathway ,Physiology (medical) ,Calcium-binding protein ,Internal medicine ,medicine ,Animals ,Myocytes, Cardiac ,Transcription factor ,Cells, Cultured ,NFATC Transcription Factors ,Forkhead Box Protein O1 ,Angiotensin II ,Calcineurin ,Calcium-Binding Proteins ,Forkhead Box Protein O3 ,Intracellular Signaling Peptides and Proteins ,NFAT ,Forkhead Transcription Factors ,Phosphoric Monoester Hydrolases ,Cell biology ,Rats ,Mice, Inbred C57BL ,Endocrinology ,Gene Expression Regulation ,FOXO3 ,Cardiology and Cardiovascular Medicine ,Proto-Oncogene Proteins c-akt ,Signal Transduction ,Transcription Factors - Abstract
Background— Cellular hypertrophy requires coordinated regulation of progrowth and antigrowth mechanisms. In cultured neonatal cardiomyocytes, Foxo transcription factors trigger an atrophy-related gene program that counters hypertrophic growth. However, downstream molecular events are not yet well defined. Methods and Results— Here, we report that expression of either Foxo1 or Foxo3 in cardiomyocytes attenuates calcineurin phosphatase activity and inhibits agonist-induced hypertrophic growth. Consistent with these results, Foxo proteins decrease calcineurin phosphatase activity and repress both basal and hypertrophic agonist-induced expression of MCIP1.4, a direct downstream target of the calcineurin/NFAT pathway. Furthermore, hearts from Foxo3-null mice exhibit increased MCIP1.4 abundance and a hypertrophic phenotype with normal systolic function at baseline. Together, these results suggest that Foxo proteins repress cardiac growth at least in part through inhibition of the calcineurin/NFAT pathway. Given that hypertrophic growth of the heart occurs in multiple contexts, our findings also suggest that certain hypertrophic signals are capable of overriding the antigrowth program induced by Foxo. Consistent with this, multiple hypertrophic agonists triggered inactivation of Foxo proteins in cardiomyocytes through a mechanism requiring the PI3K/Akt pathway. In addition, both Foxo1 and Foxo3 are phosphorylated and consequently inactivated in hearts undergoing hypertrophic growth induced by hemodynamic stress. Conclusions— This study suggests that inhibition of the calcineurin/NFAT signaling cascade by Foxo and release of this repressive action by the PI3K/Akt pathway are important mechanisms whereby Foxo factors govern cell growth in the heart.
- Published
- 2006
25. Targeted Inhibition of the NCOA1/STAT6 Protein-Protein Interaction.
- Author
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Yeongju Lee, Heeseok Yoon, Sung-Min Hwang, Min-Kyung Shin, Ji Hoon Lee, Misook Oh, Sin-Hyeog Im, Jaeyoung Song, and Hyun-Suk Lim
- Published
- 2017
- Full Text
- View/download PDF
26. Topoisomerase III is required for accurate DNA replication and chromosome segregation in Schizosaccharomyces pombe
- Author
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Misook Oh, Sang Dai Park, and In‐Soon Choi
- Subjects
DNA Replication ,Cell division ,DNA damage ,RecQ helicase ,Article ,S Phase ,Chromosome Segregation ,Schizosaccharomyces ,Genetics ,Hydroxyurea ,Topoisomerase III ,Cell Nucleus ,biology ,DNA replication ,DNA Helicases ,Temperature ,Cell cycle ,biology.organism_classification ,Molecular biology ,DNA Topoisomerases, Type I ,Schizosaccharomyces pombe ,Mutation ,Schizosaccharomyces pombe Proteins ,Cell Division ,DNA Damage ,Plasmids - Abstract
The deletion of the top3(+) gene leads to defective nuclear division and lethality in Schizosaccharo myces pombe. This lethality is suppressed by concomitant loss of rqh1(+), the RecQ helicase. Despite extensive investigation, topoisomerase III function and its relationship with RecQ helicase remain poorly understood. We generated top3 temperature-sensitive (top3-ts) mutants and found these to be defective in nuclear division and cytokinesis and to be sensitive to DNA-damaging agents. A temperature shift of top3-ts cells to 37 degrees C, or treatment with hydroxyurea at the permissive temperature, caused an increase in 'cut' (cell untimely torn) cells and elevated rates of minichromosome loss. The viability of top3-ts cells was decreased by a temperature shift during S-phase when compared with a similar treatment in other cell cycle stages. Furthermore, the top3-ts mutant was not sensitive to M-phase specific drugs. These results indicate that topoisomerase III may play an important role in DNA metabolism during DNA replication to ensure proper chromosome segregation. Our data are consistent with Top3 acting downstream of Rqh1 to process the toxic DNA structure produced by Rqh1.
- Published
- 2002
27. Converting One-Face α-Helix Mimetics into Amphiphilic α-Helix Mimetics as Potent Inhibitors of Protein-Protein Interactions.
- Author
-
Ji Hoon Lee, Misook Oh, Hyun Soo Kim, Huisun Lee, Wonpil Im, and Hyun-Suk Lim
- Subjects
- *
AMPHIPHILES , *HELICAL structure , *PROTEIN-protein interactions , *SOLID-phase synthesis , *SUBSTITUENTS (Chemistry) - Abstract
Many biologically active a-helical peptides adopt amphiphilic helical structures that contain hydrophobic residues on one side and hydrophilic residues on the other side. Therefore, α-helix mimetics capable of mimicking such amphiphilic helical peptides should possess higher binding affinity and specificity to target proteins. Here we describe an efficient method for generating amphiphilic α-helix mimetics. One-face α-helix mimetics having hydrophobic side chains on one side was readily converted into amphiphilic α-helix mimetics by introducing appropriate charged residues on the opposite side. We also demonstrate that such two-face amphiphilic α-helix mimetics indeed show remarkably improved binding affinity to a target protein, compared to one-face hydrophobic α-helix mimetics. We believe that generating a large combinatorial library of these amphiphilic α-helix mimetics can be valuable for rapid discovery of highly potent and specific modulators of protein-protein interactions. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
28. Reductively degradable polyester-based block copolymers prepared by facile polycondensation and ATRP: synthesis, degradation, and aqueous micellization
- Author
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Misook Oh, Jung Kwon Oh, Hyun-Suk Lim, Andrew Nelson-Mendez, and Samuel Aleksanian
- Subjects
Gel permeation chromatography ,Polyester ,chemistry.chemical_compound ,Aqueous solution ,Condensation polymer ,chemistry ,Amphiphile ,Polymer chemistry ,Copolymer ,General Chemistry ,Condensed Matter Physics ,Micelle ,Carbodiimide - Abstract
Well-defined reductively degradable amphiphilic block copolymers having disulfide linkages positioned repeatedly on hydrophobic chains, thus exhibiting fast degradation, were prepared by a combination of polycondensation and ATRP. The new method consists of three synthetic steps including, (1) polycondensation of commercially available diols and diacids through carbodiimide coupling or high temperature processes to synthesize degradable polyesters with disulfides labeled on the main chain at regular intervals (ssPES–OH), (2) bromination of ssPES–OH to ssPES–Br, and (3) ATRP for chain extension of ssPES–Br with water-soluble polymethacrylate, yielding ssPES-b-polymethacrylate block copolymers (ssABPs). The reductive cleavage of disulfide linkages in reducing conditions resulted in the degradation of ssPES homopolymers; their degradation rate was significantly enhanced with the increasing amounts of disulfide linkages in ssPES–OH and reducing agents. For ATRP, gel permeation chromatography and 1H-NMR results confirmed the synthesis of well-defined ssABPs and revealed that polymerizations were well controlled. Because of their amphiphilic nature, ssABPs self-assembled in water toward the formation of core/shell micelles consisting of a hydrophobic ssPES core surrounded with polymethacrylate coronas. The effects of the corona's chain length on thermal properties and micellization in water of well-defined ssABPs were examined. Moreover, reductive (or thiol-responsive) degradation of ssABP-based micelles enabled fast release of encapsulated model drugs. Cell culture experiments confirmed nontoxicity and biocompatibility of well-defined ssABPs as effect candidates for targeted delivery applications.
- Published
- 2011
29. Design, Solid-Phase Synthesis, and Evaluation of a Phenyl-Piperazine-Triazine Scaffold as α-Helix Mimetics.
- Author
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Heejo Moon, Woo Sirl Lee, Ji Hoon Lee, Misook Oh, Hyun-Suk Lim, Huisun Lee, and Wonpil Im
- Published
- 2014
- Full Text
- View/download PDF
30. Potential pharmacological chaperones targeting cancer-associated MCL-1 and Parkinson disease-associated α-synuclein.
- Author
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Misook Oh, Ji Hoon Lee, Wei Wang, Hui Sun Lee, Woo Sirl Lee, Burlak, Christopher, Wonpi Im, Hoang, Quyen Q., and Hyun-Suk Lim
- Subjects
- *
PHARMACOLOGY , *MOLECULAR chaperones , *PARKINSON'S disease , *SYNUCLEINS , *CHEMICAL libraries - Abstract
Pharmacological chaperones are small molecules that bind to proteins and stabilize them against thermal denaturation or proteolytic degradation, as well as assist or prevent certain protein-protein assemblies. These activities are being exploited for the development of treatments for diseases caused by protein instability and/or aberrant protein-protein interactions, such as those found in certain forms of cancers and neurodegenerative diseases. However, designing or discovering pharmacological chaperones for specific targets is challenging because of the relatively featureless protein target surfaces, the lack of suitable chemical libraries, and the shortage of efficient high-throughput screening methods. In this study, we attempted to address all these challenges by synthesizing a diverse library of small molecules that mimic protein α-helical secondary structures commonly found in protein-protein interaction surfaces. This was accompanied by establishing a facile "on-bead" high-throughput screening method that allows for rapid and efficient discovery of potential pharmacological chaperones and for identifying novel chaperones/ inhibitors against a cancer-associated protein, myeloid cell leukemia 1 (MCL-1), and a Parkinson disease-associated protein, α-synuclein. Our data suggest that the compounds and methods described here will be useful tools for the development of pharmaceuticals for complex-disease targets that are traditionally deemed "undruggable." [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
31. Novel Pyrrolopyrimidine-Based a-Helix Mimetics: cell-Permeable Inhibitors of Protein-Protein Interactions.
- Author
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Ji Hoon Lee, Qi Zhang, Sunhwan Jo, Chai, Sergio C., Misook Oh, Wonpil Im, Hua Lu, and Hyun-Suk Lim
- Published
- 2011
- Full Text
- View/download PDF
32. The CCAAT/Enhancer Binding Protein β (C/EBPβ) Cooperates with NFAT to Control Expression of the Calcineurin Regulatory Protein RCAN1-4.
- Author
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Misook Oh, Dey, Asim, Gerard, Robert D., Hill, Joseph A., and Rothermel, Beverly A.
- Subjects
- *
PHOSPHOPROTEIN phosphatases , *IMMUNE response , *TRANSCRIPTION factors , *SYNAPSES , *LUCIFERASES - Abstract
Regulator of calcineurin 1 (RCAN1) inhibits the protein phosphatase calcineurin and is required for appropriate immune responses, synaptic plasticity, vascular tone, angiogenesis, and cardiac remodeling. Expression of the RCAN1 - 4 isoform is under the control of the calcineurin-responsive transcription factor NFAT. Typically, NFATs act in cooperation with other transcription factors to achieve maximal activation of gene expression. In this study, we identify the CCAAT/enhancer binding protein β (C/EBPβ) as an NFAT binding partner that cooperates with NFAT to regulate RCAN1 - 4 expression. Numerous C/EBPβ binding sites are conserved in the RCAN1 - 4 proximal promoter. Overexpression of C/EBPβ increased activity of both the endogenous mouse Rcan1 - 4 gene and a human RCAN1 - 4 luciferase reporter. Binding of C/EBPβ to multiple sites in the promoter was verified using electrophoretic mobility shift assays and chromatin immunoprecipitation. A direct interaction between C/EBPβ and NFAT was demonstrated by co-immunoprecipitation of proteins and complex formation at NFAT-C/EBPβ composite sites. Depletion of endogenous C/EBPβ decreased maximal activation of RCAN1- 4 expression by calcineurin, whereas inhibition of calcineurin did not alter the ability of C/EBPβ to activate RCAN1-4 expression. Together, these findings suggest that calcineurin/NFAT activation of RCAN1 - 4 expression is in part dependent upon C/EBPβ, whereas activation by C/EBPβ is not dependent on calcineurin and may provide a calcineurin-independent pathway for regulating RCAN1 - 4 expression. Importantly, nuclear localization, C/EBPβ DNA binding activity and occupancy of the Rcan1 - 4 promoter increased in mouse models of heart failure demonstrating in vivo activation of this pathway to regulate Rcan1 - 4 expression and ultimately shape the dynamics of calcineurin-dependent signaling. [ABSTRACT FROM AUTHOR]
- Published
- 2010
- Full Text
- View/download PDF
33. Calcineurin Is Necessary for the Maintenance but Not Embryonic Development of Slow Muscle Fibers.
- Author
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Misook Oh, Rybkin, Igor I., Copeland, Victoria, Czubryt, Michael P., Shelton, John M., van Rooij, Eva, Richardson, James A., Hill, Joseph A., De Windt, Leon J., Bassel-Duby, Rhonda, Olson, Eric N., and Rothermell, Beverly A.
- Subjects
- *
MUSCLE proteins , *MUSCLES , *SOMATIC embryogenesis , *GENE expression , *TRANSGENES , *CYTOLOGY , *MOLECULAR biology - Abstract
Skeletal muscles are a mosaic of slow and fast twitch myofibers. During embryogenesis, patterns of fiber type composition are initiated that change postnatally to meet physiological demand. To examine the role of the protein phosphatase calcineurin in the initiation and maintenance of muscle fiber types, we used a "Flox-ON" approach to obtain muscle-specific overexpression of the modulatory calcineurin-interacting protein 1 (MCIP1/DSCR1), an inhibitor of calcineurin. Myo-Cre transgenic mice with early skeletal muscle-specific expression of Cre recombinase were used to activate the Flox-MCIP1 transgene. Contractile components unique to type 1 slow fibers were absent from skeletal muscle of adult Myo-Cre/Flox-MCIP1 mice, whereas oxidative capacity, myoglobin content, and mitochondrial abundance were unaltered. The soleus muscles of Myo-Cre/ Flox-MCIP1 mice fatigued more rapidly than the wild type as a consequence of the replacement of the slow myosin heavy chain MyHC-1 with a fast isoform, MyHC-2A. MyHC-1 expression in Myo-Cre/Flox-MCIP1 embryos and early neonates was normal. These results demonstrate that developmental patterning of slow fibers is independent of calcineurin, while the maintenance of the slow-fiber phenotype in the adult requires calcineurin activity. [ABSTRACT FROM AUTHOR]
- Published
- 2005
- Full Text
- View/download PDF
34. Isolation and Identification of Fur Binding Genes in Escherichia coli.
- Author
-
Misook Oh, Sang-Ho Chai, and Sechan Wee
- Subjects
- *
CARRIER proteins , *DNA , *BINDING sites - Abstract
Presents a study that isolated the ferric uptake regulation (Fur) binding fragments by in vitro interaction of purified Fur protein and Sau3A digested genomic DNA fragments. Fur binding sites of the known iron regulating operators; Identification of the Fur binding DNA fragment; Comparison of Fur binding sequences.
- Published
- 1999
- Full Text
- View/download PDF
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