1. Binding and Structural Properties of DNA Aptamers with VEGF-A-Mimic Activity
- Author
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Takumi Oguro, Hitoshi Furusho, Keiko Kimura, Fumiya Wayama, Keitaro Yoshimoto, Misako Hayashi, and Toru Yoshitomi
- Subjects
0301 basic medicine ,Angiogenesis ,Aptamer ,G-quadruplex ,Umbilical vein ,Article ,03 medical and health sciences ,chemistry.chemical_compound ,angiogenesis ,0302 clinical medicine ,Drug Discovery ,Tube formation ,Nuclease ,biology ,vascular endothelial growth factor ,Chemistry ,VEGF receptor ,aptamer ,VEGF ,Vascular endothelial growth factor ,030104 developmental biology ,030220 oncology & carcinogenesis ,Biophysics ,biology.protein ,Molecular Medicine ,Systematic evolution of ligands by exponential enrichment - Abstract
Vascular endothelial growth factors (VEGFs) are hypoxia-inducible secreted proteins to promote angiogenesis, in which VEGF-A is an important molecule that binds and activates VEGF receptor-1 (VEGFR-1) and VEGFR-2. In this study, two DNA aptamers, Apt01 and Apt02, were successfully isolated by alternating consecutive systematic evolution of ligands by exponential enrichment (SELEX) against VEGFR-1 and -2 using deep sequencing analysis in an early selection round. Their binding affinities for VEGFR-2 were lower than that of VEGFR-1, which is similar to that of VEGF-A. Structural analyses with the measurements of circular dichroism spectra and ultraviolet melting curve showed that Apt01 possessed the stem-loop structure in the molecule, whereas Apt02 formed G-quadruplex structures. In addition, Apt02 accelerated a tube formation of human umbilical vein endothelial cells faster than Apt01, which was affected by difference of binding affinity and nuclease resistance due to G-quadruplex structures. These results demonstrated that Apt02 might have a potential to function as an alternative to VEGF-A., Graphical Abstract
- Published
- 2020