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Microlensing near macro-caustics is a complex phenomenon in which swarms of micro-images produced by micro-caustics form on both sides of a macro-critical curve. Recent discoveries of highly magnified images of individual stars in massive galaxy cluster lenses, predicted to be formed by these micro-image swarms, have stimulated studies on this topic. In this Chapter, we explore microlensing near macro-caustics using both simulations and analytic calculations. We show that the mean total magnification of the micro-image swarms follows that of an extended source in the absence of microlensing. Micro-caustics join into a connected network in a region around the macro-critical line of a width proportional to the surface density of microlenses; within this region, the increase of the mean magnification toward the macro-caustic is driven by the increase of the number of micro-images rather than individual magnifications of micro-images. The maximum achievable magnification in micro-caustic crossings decreases with the mass fraction in microlenses. We conclude with a review of applications of this microlensing phenomenon, including limits to the fraction of dark matter in compact objects, and searches of Population III stars and dark matter subhalos. We argue that the discovered highly magnified stars at cosmological distances already imply that less than $\sim$ 10\% of the dark matter may be in the form of compact objects with mass above $\sim 10^{-6}\, M_{\odot}$., Comment: 9 pages, 6 figures; to be submitted to Space Science Reviews, Topical Collection "Strong Gravitational Lensing", eds. J. Wambsganss et al

Supermagnified stars are gravitationally lensed individual stars that are located close to a caustic of a lensing galaxy cluster, and have their flux magnified by a large enough factor (typically ~ 1000) to make them detectable with present telescopes. The maximum magnification is limited by microlensing caused by intracluster stars or other compact objects, which create a network of corrugated critical lines with an angular width proportional to the surface density of microlenses. We consider a set of 9 cases of supermagnified stars reported in the literature, and derive an upper limit on the surface density of compact objects, such as primordial black holes, that might be present as a fraction of the dark matter in addition to known intracluster stars. Any such additional compact objects would widen the corrugated critical line network and therefore the width of the distribution of supermagnified stars around the modeled critical lines of the lens. We find that any compact objects, including primordial black holes, with masses above $\sim 10^{-6}\, M_{\odot}$ (for which the microcaustics are smaller than the typical angular size of supermagnified stars) cannot account for more than ~ 3% of the dark matter., Comment: submitted to MNRAS

We explore constraints on the Milky Way dark matter halo oblateness using three stellar streams from globular clusters NGC 3201, M68, and Palomar 5. Previous constraints on the gravitational potential from dynamical equilibrium of stellar populations and distant Milky Way satellites are included. We model the dark halo as axisymmetric with axis ratio $q_\rho^{\rm h}$ and four additional free parameters of a two power-law density profile. The halo axis ratio, while barely constrained by the NGC 3201 stream alone, is required to be close to spherical by the streams of Palomar 5 ($q_\rho^{\rm h}=1.01\pm0.09$) and M68 ($q_\rho^{\rm h}=1.14^{+0.21}_{-0.14}$), the latter allowing a more prolate shape. The three streams together are well fitted with a halo axis ratio $q_\rho^{\rm h}=1.06\pm0.06$ and core radius $\sim$ 20 kpc. Our estimate of the halo shape agrees with previous studies using other observational data and is in tension with cosmological simulations predicting that most spiral galaxies have oblate dark matter halos with the short axis perpendicular to the disc. We discuss why the impact of the Magellanic Clouds tide is too small to change our conclusion on the halo axis ratio. We note that dynamical equilibrium of a spherical halo in the oblate disk potential implies an anisotropic dark matter velocity dispersion, larger along the vertical direction than the horizontal ones, which should relate to the assembly history of the Milky Way., Comment: 27 pages, 11 figures

WEAVE, the new wide-field, massively multiplexed spectroscopic survey facility for the William Herschel Telescope, will see first light in late 2022. WEAVE comprises a new 2-degree field-of-view prime-focus corrector system, a nearly 1000-multiplex fibre positioner, 20 individually deployable 'mini' integral field units (IFUs), and a single large IFU. These fibre systems feed a dual-beam spectrograph covering the wavelength range 366$-$959\,nm at $R\sim5000$, or two shorter ranges at $R\sim20\,000$. After summarising the design and implementation of WEAVE and its data systems, we present the organisation, science drivers and design of a five- to seven-year programme of eight individual surveys to: (i) study our Galaxy's origins by completing Gaia's phase-space information, providing metallicities to its limiting magnitude for $\sim$3 million stars and detailed abundances for $\sim1.5$ million brighter field and open-cluster stars; (ii) survey $\sim0.4$ million Galactic-plane OBA stars, young stellar objects and nearby gas to understand the evolution of young stars and their environments; (iii) perform an extensive spectral survey of white dwarfs; (iv) survey $\sim400$ neutral-hydrogen-selected galaxies with the IFUs; (v) study properties and kinematics of stellar populations and ionised gas in $z<0.5$ cluster galaxies; (vi) survey stellar populations and kinematics in $\sim25\,000$ field galaxies at $0.3\lesssim z \lesssim 0.7$; (vii) study the cosmic evolution of accretion and star formation using $>1$ million spectra of LOFAR-selected radio sources; (viii) trace structures using intergalactic/circumgalactic gas at $z>2$. Finally, we describe the WEAVE Operational Rehearsals using the WEAVE Simulator., Comment: 41 pages, 27 figures, accepted for publication by MNRAS; updated version including information on individual grants in a revised Acknowledgements section, corrections to the affiliation list, and an updated references list

We propose a novel experiment, the Canfranc Axion Detection Experiment (CADEx), to probe dark matter axions with masses in the range 330-460 $\mu$eV, within the W-band (80-110 GHz), an unexplored parameter space in the well-motivated dark matter window of Quantum ChromoDynamics (QCD) axions. The experimental design consists of a microwave resonant cavity haloscope in a high static magnetic field coupled to a highly sensitive detecting system based on Kinetic Inductance Detectors via optimized quasi-optics (horns and mirrors). The experiment is in preparation and will be installed in the dilution refrigerator of the Canfranc Underground Laboratory. Sensitivity forecasts for axion detection with CADEx, together with the potential of the experiment to search for dark photons, are presented., Comment: 23 pages, 10 figures

Primordial black holes in the asteroid-mass window ($\sim 10^{-16}$ to $10^{-11} \rm M_{\odot}$), which might constitute all the dark matter, can be captured by stars when they traverse them at low enough velocity. After being placed on a bound orbit during star formation, they can repeatedly cross the star if the orbit happens to be highly eccentric, slow down by dynamical friction and end up in the stellar core. The rate of these captures is highest in halos of high dark matter density and low velocity dispersion, when the first stars form at redshift $z \sim 20$. We compute this capture rate for low-metallicity stars of $0.3$ to $1\rm M_{\odot}$, and find that a high fraction of these stars formed in the first dwarf galaxies would capture a primordial black hole, which would then grow by accretion up to a mass that may be close to the total star mass. We show the capture rate of primordial black holes does not depend on their mass over this asteroid-mass window, and should not be much affected by external tidal perturbations. These low-mass stellar black holes could be discovered today in low-metallicity, old binary systems in the Milky Way containing a surviving low-mass main-sequence star or a white dwarf, or via gravitational waves emitted in a merger with another compact object. No mechanisms in standard stellar evolution theory are known to form black holes of less than a Chandrasekhar mass, so detecting a low-mass black hole would fundamentally impact our understanding of stellar evolution, dark matter and the early Universe., Comment: 11 pages, 7 figures, 1 table - submitted to MNRAS. v2 : matching version accepted in MNRAS

Within the increasing interest in the dark matter axion detection through haloscopes, in which different international groups are currently involved, the RADES group was established in 2016 with the goal of developing very sensitive detection systems to be operated in dipole magnets. This review deals with the work developed by this collaboration during its first five years, from the first designs, based on the multi-cavity concept, aiming to increase the haloscope volume and, so, to improve its sensitivity, their evolution, the data acquisition design, and, finally, the first experimental run. Moreover, the envisaged work within RADES, for both dipole and solenoid magnets, in the short and medium term is also presented., Comment: Review paper, 24 pages, 18 figures, 57 references

We investigate a novel technique for the astrophysical detection of axions or axion-like particles in the dark matter halo of the Milky Way based on stimulated decay of axions, which we call axion gegenschein emission. Photons from the brightest known radio sources with a frequency equal to half the axion mass stimulate axion decay while propagating through the dark matter halo, causing radio emission in a direction precisely opposite to the incoming photon in the axion rest-frame and creating a countersource for every radio source, with an image smoothed by the dark matter velocity dispersion. We calculate the flux of the axion gegenschein countersource of Cygnus A, the brightest extragalactic radio source, and the limits that can be set with SKA to the axion-photon coupling constant $g_{a\gamma}$. We find this method to be more powerful than previous proposals based on searching for radio emission from axion decay in nearby dwarf galaxies or the Milky Way. The forecasted limits remain considerably higher than predictions from QCD axion models, and limits that can be set with laboratory searches of radio waves generated in resonant cavities with strong magnetic fields similar to the ADMX experiment, although this observation would directly measure a column density of dark matter through the Galactic halo and is therefore not affected by possible substructure in the dark matter distribution., Comment: 10 pages, 3 figures

We present the photometric determination of the bright-end (L_Lya>10^43.5 erg/s) of the Lya luminosity function (LF) within four redshifts windows in the interval 2.210^43.3 erg/s) Lya-emitting candidates. We test our selection with two spectroscopic follow-up programs at the GTC telescope, confirming ~89% of the targets as line-emitting sources, with ~64% being genuine z~2.2 QSOs. We extend the 2.22 AGN/QSOs (likely dominant in our samples) are described by a structurally different LF than z>2 star-forming LAEs, namely with L^*_QSOs ~ 100 L^*_LAEs and Phi^*_QSOs ~ 10^-3 Phi^*_LAEs. Finally, our method identifies very efficiently as high-z line-emitters sources without previous spectroscopic confirmation, currently classified as stars (~2000 objects in each redshift bin, on average). Assuming a large predominance of Lya-emitting AGN/QSOs in our samples, this supports the scenario by which these are the most abundant class of z>2 Lya emitters at L_Lya>10^43.3 erg/s., Comment: 27 pages (6 in appendix), 21 figures (5 in appendix), submitted to A&A

We study the highly magnified arc SGAS J122651.3+215220 caused by a star-forming galaxy at $z_s=2.93$ crossing the lensing caustic cast by the galaxy cluster SDSS J1226+2152 ($z_l=0.43$), using Hubble Space Telescope observations. We report in the arc several asymmetric surface brightness features whose angular separations are a fraction of an arcsecond from the lensing critical curve and appear to be highly but unequally magnified image pairs of underlying compact sources, with one brightest pair having clear asymmetry consistently across four filters. One explanation of unequal magnification is microlensing by intracluster stars, which induces independent flux variations in the images of individual or groups of source stars in the lensed galaxy. For a second possibility, intracluster dark matter subhalos invisible to telescopes effectively perturb lensing magnifications near the critical curve and give rise to persistently unequal image pairs. Our modeling suggests, at least for the most prominent identified image pair, that the microlensing hypothesis is in tension with the absence of notable asymmetry variation over a six-year baseline, while subhalos of $\sim 10^6$--$10^8\,M_\odot$ anticipated from structure formation with Cold Dark Matter typically produce stationary and sizable asymmetries. We judge that observations at additional times and more precise lens models are necessary to stringently constrain temporal variability and robustly distinguish between the two explanations. The arc under this study is a scheduled target of a Director's Discretionary Early Release Science program of the James Webb Space Telescope, which will provide deep images and a high-resolution view with integral field spectroscopy., Comment: New version accepted by MNRAS; 18 pages including references and appendices, 13 figures and 4 tables; major revision of Sec. 3.2 and Figure 4 presenting improved data analysis; original conclusion strengthened

We examine the maximum possible strength of the global 21-cm absorption dip on the Cosmic Background Radiation at high-redshift caused by the atomic intergalactic medium, when the Lyman-$\alpha$ coupling is maximum, assuming no exotic cooling mechanisms from interactions with dark matter. This maximum absorption is limited by three inevitable factors that need to be accounted for: $(a)$ heating by energy transferred from the Cosmic Background Radiation to the hydrogen atoms via 21-cm transitions, dubbed as 21-cm heating; $(b)$ Ly$\alpha$ heating by scatterings of Ly$\alpha$ photons from the first stars; $(c)$ the impact of the expected density fluctuations in the intergalactic gas in standard Cold Dark Matter theory, which reduces the mean 21-cm absorption signal. Inclusion of this third novel effect reduces the maximum global 21-cm absorption by $\sim 10\%$. Overall, the three effects studied here reduce the 21-cm global absorption by $\sim 20\%$ at $z \simeq 17$., Comment: 8 pages, 5 figures

Axions are a viable candidate for Cold Dark Matter (CDM) which should generically form minihalos of sub-planetary masses from white-noise isocurvature density fluctuations if the Peccei-Quinn phase transition occurs after inflation. Despite being denser than the larger halos formed out of adiabatic fluctuations from inflation, axion minihalos have surface densities much smaller than the critical value required for gravitational lensing to produce multiple images or high magnification, and hence are practically undetectable as lenses in isolation. However, their lensing effect can be enhanced when superposed near critical curves of other lenses. We propose a method to detect them through photometric monitoring of recently discovered caustic transiting stars behind cluster lenses, under extreme magnification factors $\mu \gtrsim 10^3$--$10^4$ as the lensed stars cross microlensing caustics induced by intracluster stars. For masses of the first gravitationally collapsed minihalos in the range $\sim 10^{-15}$--$10^{-8}\,h^{-1}\,M_\odot$, we show that axion minihalos in galaxy clusters should collectively produce subtle surface density fluctuations of amplitude $\sim 10^{-4}$--$10^{-3}$ on projected length scales of $\sim 10$--$10^4\,$AU, which imprint irregularities in the microlensing light curves of caustic transiting stars. We estimate that, inside a cluster halo and over the age of the Universe, most of these minihalos are likely to avoid dynamic disruption by encounters with stars or other minihalos., Comment: Accepted for publication in the Astronomical Journal; Figure 6 updated with time axis corrected; no major changes in conclusion and text

We examine a caustic-straddling arc at $z=0.9397$ in the field of the galaxy cluster MACS J0416.1-2403 ($z=0.397$) using archival multiband HST images and show that its surface brightness exhibits anomalies that can be explained by a single highly magnified star undergoing microlensing. First, we show that the surface brightness pattern is not perfectly symmetric across the cluster critical curve, which is inconsistent with a locally smooth lens model; the location of the candidate star exhibits the most significant asymmetry. Second, our analysis indicates that the asymmetric feature has $\sim 30\%$ higher flux in the 2012 visits compared to the Frontier Fields program visits in 2014. Moreover, the variable asymmetric feature shows an anomalous color between the F814W and F105W filters in 2014. These anomalies are naturally explained by microlensing induced variability of a caustic-transiting blue supergiant in a star-forming region, with a mean magnification factor around $\mu \sim 200$. We extend this study to a statistical analysis of the whole arc image and find tentative evidence of the increased mismatch of the two images in the proximity of the critical line. Robust detection of one or multiple caustic-transiting stars in this arc will enable detailed follow-up studies that can shed light on the small-scale structure of the dark matter inside the cluster halo., Comment: 12 pages, 10 figures, submitted to ApJ

We investigate the large-scale structure of Lyman-alpha emission intensity in the Universe at redshifts z=2-3.5 using cross-correlation techniques. Our Lya emission samples are spectra of BOSS Luminous Red Galaxies from Data Release 12 with the best fit model galaxies subtracted. We cross-correlate the residual flux in these spectra with BOSS quasars, and detect a positive signal on scales 1-15 Mpc/h. We identify and remove a source of contamination not previously accounted for, due to the effects of quasar clustering on cross-fibre light. Corrected, our quasar-Lya emission cross-correlation is 50 % lower than that seen by Croft et al. for DR10, but still significant. Because only 3% of space is within 15 Mpc/h of a quasar, the result does not fully explore the global large-scale structure of Lya emission. To do this, we cross-correlate with the Lya forest. We find no signal in this case. The 95% upper limit on the global Lya mean surface brightness from Lya emission-Lya forest cross-correlation is mu < 1.2x10^-22 erg/s/cm^2/A/arcsec^2 This null result rules out the scenario where the observed quasar-Lya emission cross-correlation is primarily due to the large scale structure of star forming galaxies, Taken in combination, our results suggest that Lya emitting galaxies contribute, but quasars dominate within 15 Mpc/h. A simple model for Lya emission from quasars based on hydrodynamic simulations reproduces both the observed forest-Lya emission and quasar-Lya emission signals. The latter is also consistent with extrapolation of observations of fluorescent emission from smaller scales r < 1 Mpc., Comment: 16 pages, 16 figures, submitted to MNRAS

We measure the cosmological bias factor of DLAs from their cross-correlation with the Ly$\alpha$ forest absorption, as a function of the DLA metal strength, defined from an average of equivalent widths of the strongest detectable low-ionization metal lines. A clear increase of the bias factor with metal strength is detected, as expected from a relation of metallicity and velocity dispersion with host halo mass. The relation is stronger after the metal strength is corrected for the HI column density, to make it more related to metallicity instead of metal column density. After correcting for the effects of measurement errors of the metal strength parameter, we find that the bias factor of DLAs with the weakest metal lines is close to unity, consistent with an origin in dwarf galaxies with host halo masses $\sim10^{10} M_{\odot}$, whereas the most metal rich DLAs have a bias factor as large as $b_{\rm DLA} \sim 3$, indicative of massive galaxies or galaxy groups in host halos with masses $\sim 10^{12} M_{\odot}$. Our result confirms the physical origin of the relation of bias factors measured from cross-correlation studies to the host halos of the absorbers., Comment: 18 pages, 5 figures, 2 tables, accepted to MNRAS

We present the first paper of the series Origin of Metals around Galaxies (OMG) aimed to study the origin of the metals observed in the circumgalactic and intergalactic media. In this work we extract and build the catalogs of metal absorbers that will be used in future analyses, and make our results publicly available to the community. We design a fully automatic algorithm to search for absorption metal-line doublets of the species CIV, NV, SiIV and MgII in high-resolution ($R\gtrsim30\,000$) quasar spectra without human intervention, and apply it to the high-resolution and signal-to-noise ratio spectra of 690 quasars, observed with the UVES and HIRES instruments. We obtain $5\,656$ CIV doublets, $7\,919$ doublets of MgII, $2\,258$ of SiIV, and 239 of NV, constituting the largest high-resolution metal-doublet samples to date, and estimate the dependence of their completeness and purity on various doublet parameters such as equivalent width and redshift, using real and artificial quasar spectra. The catalogs include doublets with rest-frame line equivalent widths down to a few ${\rm m\AA}$, all detected at a significance above 3$\sigma$, and covering the redshifts between $1

Luminous stars in background galaxies straddling the lensing caustic of a foreground galaxy cluster can be individually detected due to extreme magnification factors of $\sim 10^2$--$10^3$, as recently observed in deep HST images. We propose a direct method to probe the presence of dark matter subhalos in galaxy clusters by measuring the astrometric perturbation they induce on the image positions of magnified stars or bright clumps: lensing by subhalos breaks the symmetry of a smooth critical curve, traced by the midpoints of close image pairs. For the giant arc at $z = 0.725$ behind the lensing cluster Abell 370 at $z = 0.375$, a promising target for detecting image pairs of stars, we find that subhalos of masses in the range $10^6$--$10^8\,M_\odot$ with the abundance predicted in the cold dark matter theory should typically imprint astrometric distortions at the level of $20$--$80\,{\rm mas}$. We estimate that $\sim 10\,$hr integrations with JWST at $\sim 1$--$3\,\mu{\rm m}$ may uncover several magnified stars whose image doublets will reveal the subhalo-induced structures of the critical curve. This method can probe a dynamic range in the subhalo to cluster halo mass ratio $m/M \sim 10^{-7}$--$10^{-9}$, thereby placing new constraints on the nature of dark matter., Comment: 15 pages and 8 figures including references. Version 3: matching manuscript accepted by ApJ; Figure 8 corrected; conclusions unchanged

Spinning dust grains in front of the bright Galactic synchrotron background can produce a weak absorption signal that could affect measurements of high redshift 21 cm absorption. At frequencies near 80 MHz where the EDGES experiment has reported 21\,cm absorption at $z \approx 17$, absorption could be produced by interstellar nanoparticles with radii $a \approx 50\AA$ in the cold interstellar medium at temperature $T \approx 50$ K. Atmospheric aerosols could contribute additional absorption. The strength of the absorption depends on the abundance of such grains and on their dipole moments, which are uncertain. The breadth of the absorption spectrum of spinning dust limits its possible impact on measurement of a relatively narrow 21 cm absorption feature., Comment: version published in ApJL

An ultra-light axion field with mass $\sim 10^{-22}\ {\rm eV}$, also known as wave or fuzzy dark matter, has been proposed as a component of the dark matter in the Universe. We study the evolution of the axion dark matter distribution in the central region of a halo, assuming the mass is dominated by this axion field, and that gravity is the only important interaction. We calculate the excited axion states in the spherical gravitational potential generated by the self-gravitating ground-state, also known as soliton. These excited states are similar to the states of the hydrogen atom with quantum numbers $(n,l,m)$, here designating oscillation modes of a classical wave. At fixed $n$, the modes with highest $l$ have the lowest energy because of the extended mass distribution generating the potential. We use an approximate analytical treatment to derive the distribution of mass in these states when a steady-state is reached by dynamical relaxation, and find that a corona with a mass density profile $\rho \propto r^{-5/3}$ should be set up around the central soliton, analogous to the Bahcall-Wolf cusp predicted for the stellar distribution around a central black hole. The central soliton accretes dark matter from the corona as dynamical relaxation proceeds and negative orbital energy flows out. This density profile should remain valid out to the radius where the mass in the corona is comparable to the mass of the central soliton; further than that, the gravitational potential depends on the initial distribution of dark matter and the relaxation time increases rapidly with radius., Comment: 11 pages, 4 figures

The Baryon Oscillation Spectroscopic Survey of SDSS-III has provided an unprecedentedly large sample of Damped \lya systems (DLAs), the largest repositories of neutral hydrogen in the Universe. This DLA sample has been used to determine the DLA bias factor from their cross-correlation with the \lya forest absorption in \cite{FontRibera2012,Perez2018}, showing that DLAs are associated with relatively massive halos. However, the low resolution and signal-to-noise of BOSS spectra do not allow precise measurements of the DLA metal lines. We define a metal strength parameter, $S$, based on combining equivalent widths of 17 metal lines, that can be measured with an optimal signal-to-noise ratio for individual DLAs in BOSS spectra, allowing for the classification of the DLA population into subgroups of different $S$. We present the distribution of this DLA metal strength and the dependence of its mean value on $N_{\rm HI}$ and redshift. We search for systematic effects and variations in the catalogue purity by examining the dependence of the $S$ distribution on the spectral signal-to-noise and the estimated error on $S$. A catalogue of DLAs with measured equivalent widths for the selected 17 metal lines and the value of $S$ is made publicly available, which will be used to measure the dependence of the DLA bias factor on the $S$ parameter. The relation of the metal strength on the gas metal abundances and velocity dispersion can be constrained by studying the stacked metal absorption spectra of DLAs as a function of $S$, allowing for future determinations of the dependence of the bias factor on the metallicity and velocity dispersion of DLAs., Comment: 12 pages, 10 figures, link to online catalogue (https://github.com/andreuandreu/Catalogue_Metal_Strength_DLAs_SDSS-BOSS_DR12)

We present a new determination of the large-scale clustering of the CIV forest (i.e., the absorption due to all CIV absorbers) using its cross-correlation with quasars in the Sloan Digital Sky Survey (SDSS) Data Release 12 (DR12). We fit a linear bias model to the measured cross-correlation. We find that the transmission bias of the CIV forest, $b_{Fc}$, at a mean redshift of $z=2.3$, obeys the relation $(1+\beta_c)b_{F c} = -0.024 \pm 0.003$. Here, $\beta_{c}$ is the linear redshift space distortion parameter of the CIV absorption, which can only be poorly determined at $\beta_c=1.1\pm 0.6$ from our data. This transmission bias is related to the bias of CIV absorbers and their host halos through the effective mean optical depth of the CIV forest, $\bar\tau_c$. Estimating a value $\bar \tau_c(z) \simeq 0.01$ from previous studies of the CIV equivalent width distribution, our measurement implies a CIV absorber bias near unity, with a large error due to uncertainties in both $\beta_c$ and $\bar\tau_c$. This makes it compatible with the higher DLA bias $b_{\rm DLA}\simeq 2$ measured previously from the cross-correlation of DLAs and the Lyman-$\alpha$ forest. We discuss the implications of the CIV absorber bias for the mass distribution of their host halos. More accurate determinations of $\bar \tau_c(z)$ and $\beta_c$ are necessary to obtain a more robust measurement of this CIV absorber bias.

We present a measurement of the DLA mean bias from the cross-correlation of DLA and the Ly$\alpha$ forest, updating earlier results of Font-Ribera et al. 2012 with the final BOSS Data Release and an improved method to address continuum fitting corrections. Our cross-correlation is well fitted by linear theory with the standard $\Lambda CDM$ model, with a DLA bias of $b_{\rm DLA} = 1.99\pm 0.11$; a more conservative analysis, which removes DLA in the Ly$\beta$ forest and uses only the cross-correlation at $r> 10{\rm h^{-1}\,Mpc}$, yields $b_{\rm DLA} = 2.00\pm 0.19$. This assumes the cosmological model from \cite{Planck2015} and the Ly$\alpha$ forest bias factors of Bautista et al. 2017, and includes only statistical errors obtained from bootstrap analysis. The main systematic errors arise from possible impurities and selection effects in the DLA catalogue, and from uncertainties in the determination of the Ly$\alpha$ forest bias factors and a correction for effects of high column density absorbers. We find no dependence of the DLA bias on column density or redshift. The measured bias value corresponds to a host halo mass $\sim 4\cdot10^{11} {\rm M_{\odot}}$ if all DLA were hosted in halos of a similar mass. In a realistic model where host halos over a broad mass range have a DLA cross section $\Sigma(M_h) \propto M_h^{\alpha}$ down to $M_h > M_{\rm min} =10^{8.5} {\rm M_{\odot}}$, we find that $\alpha > 1$ is required to have $b_{\rm DLA}> 1.7$, implying a steeper relation or higher value of $M_{\rm min}$ than is generally predicted in numerical simulations of galaxy formation., Comment: accepted to MNRAS, 23 pages, 8 figures, 4 tables

We present a measurement of baryon acoustic oscillations (BAO) in the cross-correlation of quasars with the Ly$\alpha$-forest flux-transmission at a mean redshift $z=2.40$. The measurement uses the complete SDSS-III data sample: 168,889 forests and 234,367 quasars from the SDSS Data Release DR12. In addition to the statistical improvement on our previous study using DR11, we have implemented numerous improvements at the analysis level allowing a more accurate measurement of this cross-correlation. We also developed the first simulations of the cross-correlation allowing us to test different aspects of our data analysis and to search for potential systematic errors in the determination of the BAO peak position. We measure the two ratios $D_{H}(z=2.40)/r_{d} = 9.01 \pm 0.36$ and $D_{M}(z=2.40)/r_{d} = 35.7 \pm 1.7$, where the errors include marginalization over the non-linear velocity of quasars and the metal - quasar cross-correlation contribution, among other effects. These results are within $1.8\sigma$ of the prediction of the flat-$\Lambda$CDM model describing the observed CMB anisotropies. We combine this study with the Ly$\alpha$-forest auto-correlation function [2017A&A...603A..12B], yielding $D_{H}(z=2.40)/r_{d} = 8.94 \pm 0.22$ and $D_{M}(z=2.40)/r_{d} = 36.6 \pm 1.2$, within $2.3\sigma$ of the same flat-$\Lambda$CDM model., Comment: accepted by A&A

Recent observations of lensed galaxies at cosmological distances have detected individual stars that are extremely magnified when crossing the caustics of lensing clusters. In idealized cluster lenses with smooth mass distributions, two images of a star of radius $R$ approaching a caustic brighten as $t^{-1/2}$ and reach a peak magnification $\sim 10^{6}\, (10\, R_{\odot}/R)^{1/2}$ before merging on the critical curve. We show that a mass fraction ($\kappa_\star \gtrsim \, 10^{-4.5}$) in microlenses inevitably disrupts the smooth caustic into a network of corrugated microcaustics, and produces light curves with numerous peaks. Using analytical calculations and numerical simulations, we derive the characteristic width of the network, caustic-crossing frequencies, and peak magnifications. For the lens parameters of a recent detection and a population of intracluster stars with $\kappa_\star \sim 0.01$, we find a source-plane width of $\sim 20 \, {\rm pc}$ for the caustic network, which spans $0.2 \, {\rm arcsec}$ on the image plane. A source star takes $\sim 2\times 10^4$ years to cross this width, with a total of $\sim 6 \times 10^4$ crossings, each one lasting for $\sim 5\,{\rm hr}\,(R/10\,R_\odot)$ with typical peak magnifications of $\sim 10^{4} \left( R/ 10\,R_\odot \right)^{-1/2}$. The exquisite sensitivity of caustic-crossing events to the granularity of the lens-mass distribution makes them ideal probes of dark matter components, such as compact halo objects and ultralight axion dark matter., Comment: 29 pages, 11 figures, 2 tables; changed to match published version

We use flux-transmission correlations in \Lya forests to measure the imprint of baryon acoustic oscillations (BAO). The study uses spectra of 157,783 quasars in the redshift range $2.1\le z \le 3.5$ from the Sloan Digital Sky Survey (SDSS) Data Release 12 (DR12). Besides the statistical improvements on our previous studies using SDSS DR9 and DR11, we have implemented numerous improvements in the analysis procedure, allowing us to construct a physical model of the correlation function and to investigate potential systematic errors in the determination of the BAO peak position. The Hubble distance, $\DHub=c/H(z)$, relative to the sound horizon is $\DHub(z=2.33)/r_d=9.07 \pm 0.31$. The best-determined combination of comoving angular-diameter distance, $\DM$, and the Hubble distance is found to be $\DHub^{0.7}\DM^{0.3}/r_d=13.94\pm0.35$. This value is $1.028\pm0.026$ times the prediction of the flat-\lcdm model consistent with the cosmic microwave background (CMB) anisotropy spectrum. The errors include marginalization over the effects of unidentified high-density absorption systems and fluctuations in ultraviolet ionizing radiation. Independently of the CMB measurements, the combination of our results and other BAO observations determine the open-\lcdm density parameters to be $\om=0.296 \pm 0.029$, $\ol=0.699 \pm 0.100$ and $\Omega_k = -0.002 \pm 0.119$., Comment: 22 pages, accepted A&A

We study the mean absorption spectrum of the Damped Lyman alpha population at $z\sim 2.6$ by stacking normalized, rest-frame shifted spectra of $\sim 27\,000$ DLAs from the DR12 of BOSS/SDSS-III. We measure the equivalent widths of 50 individual metal absorption lines in 5 intervals of DLA hydrogen column density, 5 intervals of DLA redshift, and overall mean equivalent widths for an additional 13 absorption features from groups of strongly blended lines. The mean equivalent width of low-ionization lines increases with $N_{\rm HI}$, whereas for high-ionization lines the increase is much weaker. The mean metal line equivalent widths decrease by a factor $\sim 1.1-1.5$ from $z\sim2.1$ to $z \sim 3.5$, with small or no differences between low- and high-ionization species. We develop a theoretical model, inspired by the presence of multiple absorption components observed in high-resolution spectra, to infer mean metal column densities from the equivalent widths of partially saturated metal lines. We apply this model to 14 low-ionization species and to AlIII, SIII, SiIII, CIV, SiIV, NV and OVI. We use an approximate derivation for separating the equivalent width contributions of several lines to blended absorption features, and infer mean equivalent widths and column densities from lines of the additional species NI, ZnII, CII${}^{*}$, FeIII, and SIV. Several of these mean column densities of metal lines in DLAs are obtained for the first time; their values generally agree with measurements of individual DLAs from high-resolution, high signal-to-noise ratio spectra when they are available., Comment: Resubmitted after referee revision. Added evolution of metal-line equivalent widths with redshift (Section 5). Added assessment of result dependencies on sample and methodology. Comparison of relative abundances of DLAs vs Milky Way ISM and halo (Figure 16). Publicly available videos of composite quasar and DLA spectra realizations here: https://github.com/lluism/

The fraction of galaxies with strong Ly$\alpha$ emission has been observed to decrease rapidly with redshift at $z \ge 6$, after a gradual increase at $z< 6$. This has been interpreted as a hint of the reionization of the intergalactic medium (IGM): the emitted Ly$\alpha$ photons would be scattered by an increasingly neutral IGM at $z>6$. We study this effect by modeling the ionization and Ly$\alpha$ radiative transfer in the infall region and the IGM around a Ly$\alpha$ emitting galaxy (LAE), for a spherical halo model with the mean density and radial velocity profiles in the standard $\Lambda$CDM cosmological scenario. We find that the expected fast increase of the ionizing background intensity toward the end of the reionization epoch implies a rapid evolution of halo infall regions from being self-shielded against the external ionizing background to being mostly ionized. Whereas self-shielded infall regions can scatter the Ly$\alpha$ photons over a much larger area than the commonly used apertures for observing LAEs, the same infalling gas is no longer optically thick to the Ly$\alpha$ emission line after it is ionized by the external background, making the Ly$\alpha$ emission more compact and brighter within the observed apertures. Based on this simple model, we show that the observed drop in the abundance of LAEs at $z>6$ does not imply a rapid increase with redshift of the fraction of the whole IGM volume that is atomic, but is accounted for by a rapid increase of the neutral fraction in the infall regions around galaxy host halos., Comment: 10 pages, 5 figures, submitted to ApJ

The Lyman alpha forest power spectrum has been measured on large scales by the BOSS survey in SDSS-III at $z\sim 2.3$, has been shown to agree well with linear theory predictions, and has provided the first measurement of Baryon Acoustic Oscillations at this redshift. However, the power at small scales, affected by non-linearities, has not been well examined so far. We present results from a variety of hydrodynamic simulations to predict the redshift space non-linear power spectrum of the Lyman Alpha transmission for several models, testing the dependence on resolution and box size. A new fitting formula is introduced to facilitate the comparison of our simulation results with observations and other simulations. The non-linear power spectrum has a generic shape determined by a transition scale from linear to non-linear anisotropy, and a Jeans scale below which the power drops rapidly. In addition, we predict the two linear bias factors of the Lyman Alpha forest and provide a better physical interpretation of their values and redshift evolution. The dependence of these bias factors and the non-linear power on the amplitude and slope of the primordial fluctuations power spectrum, the temperature-density relation of the intergalactic medium, and the mean Lyman Alpha transmission, as well as the redshift evolution, is investigated and discussed in detail. A preliminary comparison to the observations shows that the predicted redshift distortion parameter is in good agreement with the recent determination of Blomqvist et al., but the density bias factor is lower than observed. We make all our results publicly available in the form of tables of the non-linear power spectrum that is directly obtained from all our simulations, and parameters of our fitting formula., Comment: 63 pages, 32 figures, 11 tables, link to online material, submitted to JCAP; revised in response to first referee report

In recent years, the Lyman-$\alpha$ absorption observed in the spectra of high-redshift quasars has been used as a tracer of large-scale structure by means of the three-dimensional Lyman-$\alpha$ forest auto-correlation function at redshift $z\simeq 2.3$, but the need to fit the quasar continuum in every absorption spectrum introduces a broadband distortion that is difficult to correct and causes a systematic error for measuring any broadband properties. We describe a $k$-space model for this broadband distortion based on a multiplicative correction to the power spectrum of the transmitted flux fraction that suppresses power on scales corresponding to the typical length of a Lyman-$\alpha$ forest spectrum. Implementing the distortion model in fits for the baryon acoustic oscillation (BAO) peak position in the Lyman-$\alpha$ forest auto-correlation, we find that the fitting method recovers the input values of the linear bias parameter $b_{F}$ and the redshift-space distortion parameter $\beta_{F}$ for mock data sets with a systematic error of less than 0.5\%. Applied to the auto-correlation measured for BOSS Data Release 11, our method improves on the previous treatment of broadband distortions in BAO fitting by providing a better fit to the data using fewer parameters and reducing the statistical errors on $\beta_{F}$ and the combination $b_{F}(1+\beta_{F})$ by more than a factor of seven. The measured values at redshift $z=2.3$ are $\beta_{F}=1.39^{+0.11\ +0.24\ +0.38}_{-0.10\ -0.19\ -0.28}$ and $b_{F}(1+\beta_{F})=-0.374^{+0.007\ +0.013\ +0.020}_{-0.007\ -0.014\ -0.022}$ (1$\sigma$, 2$\sigma$ and 3$\sigma$ statistical errors). Our fitting software and the input files needed to reproduce our main results are publicly available., Comment: 28 pages, 15 figures, matches the published version

(Abridged) We detect the large-scale structure of Lya emission in the Universe at redshifts z=2-3.5 by measuring the cross-correlation of Lya surface brightness with quasars in SDSS/BOSS. We use a million spectra targeting Luminous Red Galaxies at z<0.8, after subtracting a best fit model galaxy spectrum from each one, as an estimate of the high-redshift Lya surface brightness. The quasar-Lya emission cross-correlation we detect has a shape consistent with a LambdaCDM model with Omega_M =0.30^+0.10-0.07. The predicted amplitude of this cross-correlation is proportional to the product of the mean Lya surface brightness, , the amplitude of mass fluctuations, and the quasar and Lya emission bias factors. Using known values, we infer (b_alpha/3) = (3.9 +/- 0.9) x 10^-21 erg/s cm^-2 A^-1 arcsec^-2, where b_alpha is the Lya emission bias factor. If the dominant sources of Lya emission are star forming galaxies, we infer rho_SFR = (0.28 +/- 0.07) (3/b_alpha) /yr/Mpc^3 at z=2-3.5. For b_alpha=3, this value is a factor of 21-35 above previous estimates from individually detected Lya emitters, although consistent with the total rho_SFR derived from dust-corrected, continuum UV surveys. 97% of the Lya emission in the Universe at these redshifts is therefore undetected in previous surveys of Lya emitters. Our measurement is much greater than seen from stacking analyses of faint halos surrounding previously detected Lya emitters, but we speculate that it arises from similar Lya halos surrounding all luminous star-forming galaxies. We also detect redshift space anisotropy of the quasar-Lya emission cross-correlation, finding evidence at the 3.0 sigma level that it is radially elongated, consistent with distortions caused by radiative-transfer effects (Zheng et al. (2011)). Our measurements represent the first application of the intensity mapping technique to optical observations., Comment: 32 pages, 29 figures. Submitted to MNRAS. Video summary of the paper at: https://www.youtube.com/watch?v=9E6Ap66G5h0

The third generation of the Sloan Digital Sky Survey (SDSS-III) took data from 2008 to 2014 using the original SDSS wide-field imager, the original and an upgraded multi-object fiber-fed optical spectrograph, a new near-infrared high-resolution spectrograph, and a novel optical interferometer. All the data from SDSS-III are now made public. In particular, this paper describes Data Release 11 (DR11) including all data acquired through 2013 July, and Data Release 12 (DR12) adding data acquired through 2014 July (including all data included in previous data releases), marking the end of SDSS-III observing. Relative to our previous public release (DR10), DR12 adds one million new spectra of galaxies and quasars from the Baryon Oscillation Spectroscopic Survey (BOSS) over an additional 3000 sq. deg of sky, more than triples the number of H-band spectra of stars as part of the Apache Point Observatory (APO) Galactic Evolution Experiment (APOGEE), and includes repeated accurate radial velocity measurements of 5500 stars from the Multi-Object APO Radial Velocity Exoplanet Large-area Survey (MARVELS). The APOGEE outputs now include measured abundances of 15 different elements for each star. In total, SDSS-III added 2350 sq. deg of ugriz imaging; 155,520 spectra of 138,099 stars as part of the Sloan Exploration of Galactic Understanding and Evolution 2 (SEGUE-2) survey; 2,497,484 BOSS spectra of 1,372,737 galaxies, 294,512 quasars, and 247,216 stars over 9376 sq. deg; 618,080 APOGEE spectra of 156,593 stars; and 197,040 MARVELS spectra of 5,513 stars. Since its first light in 1998, SDSS has imaged over 1/3 of the Celestial sphere in five bands and obtained over five million astronomical spectra., Comment: DR12 data are available at http://www.sdss3.org/dr12. 30 pages. 11 figures. Accepted to ApJS

We describe mock data-sets generated to simulate the high-redshift quasar sample in Data Release 11 (DR11) of the SDSS-III Baryon Oscillation Spectroscopic Survey (BOSS). The mock spectra contain Ly{\alpha} forest correlations useful for studying the 3D correlation function including Baryon Acoustic Oscillations (BAO). They also include astrophysical effects such as quasar continuum diversity and high-density absorbers, instrumental effects such as noise and spectral resolution, as well as imperfections introduced by the SDSS pipeline treatment of the raw data. The Ly{\alpha} forest BAO analysis of the BOSS collaboration, described in Delubac et al. 2014, has used these mock data-sets to develop and cross-check analysis procedures prior to performing the BAO analysis on real data, and for continued systematic cross checks. Tests presented here show that the simulations reproduce sufficiently well important characteristics of real spectra. These mock data-sets will be made available together with the data at the time of the Data Release 11., Comment: 35 pages, 19 figures, Accepted by JCAP

We derive constraints on cosmological parameters and tests of dark energy models from the combination of baryon acoustic oscillation (BAO) measurements with cosmic microwave background (CMB) and Type Ia supernova (SN) data. We take advantage of high-precision BAO measurements from galaxy clustering and the Ly-alpha forest (LyaF) in the BOSS survey of SDSS-III. BAO data alone yield a high confidence detection of dark energy, and in combination with the CMB angular acoustic scale they further imply a nearly flat universe. Combining BAO and SN data into an "inverse distance ladder" yields a 1.7% measurement of $H_0=67.3 \pm1.1$ km/s/Mpc. This measurement assumes standard pre-recombination physics but is insensitive to assumptions about dark energy or space curvature, so agreement with CMB-based estimates that assume a flat LCDM cosmology is an important corroboration of this minimal cosmological model. For open LCDM, our BAO+SN+CMB combination yields $\Omega_m=0.301 \pm 0.008$ and curvature $\Omega_k=-0.003 \pm 0.003$. When we allow more general forms of evolving dark energy, the BAO+SN+CMB parameter constraints remain consistent with flat LCDM. While the overall $\chi^2$ of model fits is satisfactory, the LyaF BAO measurements are in moderate (2-2.5 sigma) tension with model predictions. Models with early dark energy that tracks the dominant energy component at high redshifts remain consistent with our constraints. Expansion history alone yields an upper limit of 0.56 eV on the summed mass of neutrino species, improving to 0.26 eV if we include Planck CMB lensing. Standard dark energy models constrained by our data predict a level of matter clustering that is high compared to most, but not all, observational estimates. (Abridged), Comment: 38 pages, 20 figures, BOSS collaboration paper; v2: fixed inconsistent definitions of DH, added references; v3: version accepted by PRD, corrected error resulting in significantly weaker constraints on decaying dark matter model

An analytical framework is presented to understand the effects of a fluctuating intensity of the cosmic ionising background on the correlations of the Ly{\alpha} forest transmission fraction measured in quasar spectra. In the absence of intensity fluctuations, the Ly{\alpha} power spectrum should have the expected cold dark matter power spectrum with redshift distortions in the linear regime, with a bias factor b_{\delta} and a redshift distortion parameter {\beta} that depend on redshift but are independent of scale. The intensity fluctuations introduce a scale dependence in both b_{\delta} and {\beta}, but keeping their product b_{\delta}{\beta} fixed. Observations of the Ly{\alpha} correlations and cross-correlations with radiation sources like those being done at present in the BOSS survey of SDSS-III (Busca et al. 2013; Slosar et al. 2013; Font-Ribera et al. 2014) have the potential to measure this scale dependence, which reflects the biasing properties of the sources and absorbers of the ionising background. We also compute a second term affecting the Ly{\alpha} spectrum, due to shot noise in the sources of radiation. This term is very large if luminous quasars are assumed to produce the ionising background and to emit isotropically with a constant luminosity, but should be reduced by a contribution from galaxies, and by the finite lifetime and anisotropic emission of quasars., Comment: 12 pages, 6 figures Accepted for publication in MNRAS

We report a detection of the baryon acoustic oscillation (BAO) feature in the flux-correlation function of the Ly{\alpha} forest of high-redshift quasars with a statistical significance of five standard deviations. The study uses 137,562 quasars in the redshift range $2.1\le z \le 3.5$ from the Data Release 11 (DR11) of the Baryon Oscillation Spectroscopic Survey (BOSS) of SDSS-III. This sample contains three times the number of quasars used in previous studies. The measured position of the BAO peak determines the angular distance, $D_A(z=2.34)$ and expansion rate, $H(z=2.34)$, both on a scale set by the sound horizon at the drag epoch, $r_d$. We find $D_A/r_d=11.28\pm0.65(1\sigma)^{+2.8}_{-1.2}(2\sigma)$ and $D_H/r_d=9.18\pm0.28(1\sigma)\pm0.6(2\sigma)$ where $D_H=c/H$. The optimal combination, $\sim D_H^{0.7}D_A^{0.3}/r_d$ is determined with a precision of $\sim2\%$. For the value $r_d=147.4~{\rm Mpc}$, consistent with the CMB power spectrum measured by Planck, we find $D_A(z=2.34)=1662\pm96(1\sigma)~{\rm Mpc}$ and $H(z=2.34)=222\pm7(1\sigma)~{\rm km\,s^{-1}Mpc^{-1}}$. Tests with mock catalogs and variations of our analysis procedure have revealed no systematic uncertainties comparable to our statistical errors. Our results agree with the previously reported BAO measurement at the same redshift using the quasar-Ly{\alpha} forest cross-correlation. The auto-correlation and cross-correlation approaches are complementary because of the quite different impact of redshift-space distortion on the two measurements. The combined constraints from the two correlation functions imply values of $D_A/r_d$ and $D_H/r_d$ that are, respectively, 7% low and 7% high compared to the predictions of a flat $\Lambda$CDM cosmological model with the best-fit Planck parameters. With our estimated statistical errors, the significance of this discrepancy is $\approx 2.5\sigma$., Comment: Accepted for publication in A&A. 17 pages, 18 figures

We present a measurement of the cross-correlation of MgII absorption and massive galaxies, using the DR11 main galaxy sample of the Baryon Oscillation Spectroscopic Survey of SDSS-III (CMASS galaxies), and the DR7 quasar spectra of SDSS-II. The cross-correlation is measured by stacking quasar absorption spectra shifted to the redshift of galaxies that are within a certain impact parameter bin of the quasar, after dividing by a quasar continuum model. This results in an average MgII equivalent width as a function of impact parameter from a galaxy, ranging from 50 kpc to more than 10 Mpc in proper units, which includes all MgII absorbers. We show that special care needs to be taken to use an unbiased quasar continuum estimator, to avoid systematic errors in the measurement of the mean stacked MgII equivalent width. The measured cross-correlation follows the expected shape of the galaxy correlation function, although measurement errors are large. We use the cross-correlation amplitude to derive the bias factor of MgII absorbers, finding bMgII = 2.33 \pm? 0.19, where the error accounts only for the statistical uncertainty in measuring the mean equivalent width. This bias factor is larger than that obtained in previous studies and may be affected by modeling uncertainties that we discuss, but if correct it suggests that MgII absorbers at redshift z \simeq 0:5 are spatially distributed on large scales similarly to the CMASS galaxies in BOSS. Keywords: galaxies: haloes, galaxies: formation, quasars: absorption lines, large-scale structure of universe, Comment: Accepted for publication to MNRAS. Accepted 2014 December 12. Received 2014 November 29; in original form 2014 February 6

We present the Data Release 10 Quasar (DR10Q) catalog from the Baryon Oscillation Spectroscopic Survey (BOSS) of the Sloan Digital Sky Survey III. The catalog includes all BOSS objects that were targeted as quasar candidates during the first 2.5 years of the survey and that are confirmed as quasars via visual inspection of the spectra. The catalog also includes known quasars (mostly from SDSS-I and II) that were reobserved by BOSS. The catalog contains 166,583 quasars (74,454 are new discoveries since SDSS-DR9) detected over 6,373 deg$^{2}$ with robust identification and redshift measured by a combination of principal component eigenspectra. The number of quasars with $z>2.15$ (117,668) is $\sim$5 times greater than the number of $z>2.15$ quasars known prior to BOSS. Redshifts and FWHMs are provided for the strongest emission lines (CIV, CIII, MgII). The catalog identifies 16,461 broad absorption line quasars and gives their characteristics. For each object, the catalog presents five-band (u, g, r, i, z) CCD-based photometry with typical accuracy of 0.03 mag and information on the optical morphology and selection method. The catalog also contains X-ray, ultraviolet, near-infrared, and radio emission properties of the quasars, when available, from other large-area surveys. The calibrated digital spectra cover the wavelength region 3,600-10,500\AA\ at a spectral resolution in the range 1,300$<$R$<$2,500; the spectra can be retrieved from the SDSS Catalog Archive Server. We also provide a supplemental list of an additional 2,376 quasars that have been identified among the galaxy targets of the SDSS-III/BOSS., Comment: Accepted for publication in A&A. The catalog is available at http://www.sdss3.org/dr10/algorithms/qso_catalog.php (Note that there is a slight delay for the website to appear online)

We measure the large-scale cross-correlation of quasars with the Lyman alpha forest absorption, using over 164,000 quasars from Data Release 11 of the SDSS-III Baryon Oscillation Spectroscopic Survey. We extend the previous study of roughly 60,000 quasars from Data Release 9 to larger separations, allowing a measurement of the Baryonic Acoustic Oscillation (BAO) scale along the line of sight $c/(H(z=2.36) ~ r_s) = 9.0 \pm 0.3$ and across the line of sight $D_A(z=2.36) / ~ r_s = 10.8 \pm 0.4$, consistent with CMB and other BAO data. Using the best fit value of the sound horizon from Planck data ($r_s=147.49 Mpc$), we can translate these results to a measurement of the Hubble parameter of $H(z=2.36) = 226 \pm 8 km/s / Mpc$ and of the angular diameter distance of $D_A(z=2.36) = 1590 \pm 60 Mpc$. The measured cross-correlation function and an update of the code to fit the BAO scale (baofit) are made publicly available., Comment: 26 pages, 7 figures, version published by JCAP, with some extra comments suggested by the referee. Results unchanged from previous version

The Sloan Digital Sky Survey (SDSS) has been in operation since 2000 April. This paper presents the tenth public data release (DR10) from its current incarnation, SDSS-III. This data release includes the first spectroscopic data from the Apache Point Observatory Galaxy Evolution Experiment (APOGEE), along with spectroscopic data from the Baryon Oscillation Spectroscopic Survey (BOSS) taken through 2012 July. The APOGEE instrument is a near-infrared R~22,500 300-fiber spectrograph covering 1.514--1.696 microns. The APOGEE survey is studying the chemical abundances and radial velocities of roughly 100,000 red giant star candidates in the bulge, bar, disk, and halo of the Milky Way. DR10 includes 178,397 spectra of 57,454 stars, each typically observed three or more times, from APOGEE. Derived quantities from these spectra (radial velocities, effective temperatures, surface gravities, and metallicities) are also included.DR10 also roughly doubles the number of BOSS spectra over those included in the ninth data release. DR10 includes a total of 1,507,954 BOSS spectra, comprising 927,844 galaxy spectra; 182,009 quasar spectra; and 159,327 stellar spectra, selected over 6373.2 square degrees., Comment: 15 figures; 1 table. Accepted to ApJS. DR10 is available at http://www.sdss3.org/dr10 v3 fixed 3 diacritic markings in the arXiv HTML listing of the author names

We have developed two independent methods to measure the one-dimensional power spectrum of the transmitted flux in the Lyman-$\alpha$ forest. The first method is based on a Fourier transform, and the second on a maximum likelihood estimator. The two methods are independent and have different systematic uncertainties. The determination of the noise level in the data spectra was subject to a novel treatment, because of its significant impact on the derived power spectrum. We applied the two methods to 13,821 quasar spectra from SDSS-III/BOSS DR9 selected from a larger sample of over 60,000 spectra on the basis of their high quality, large signal-to-noise ratio, and good spectral resolution. The power spectra measured using either approach are in good agreement over all twelve redshift bins from $ = 2.2$ to $ = 4.4$, and scales from 0.001 $\rm(km/s)^{-1}$ to $0.02 \rm(km/s)^{-1}$. We determine the methodological and instrumental systematic uncertainties of our measurements. We provide a preliminary cosmological interpretation of our measurements using available hydrodynamical simulations. The improvement in precision over previously published results from SDSS is a factor 2--3 for constraints on relevant cosmological parameters. For a $\Lambda$CDM model and using a constraint on $H_0$ that encompasses measurements based on the local distance ladder and on CMB anisotropies, we infer $\sigma_8 =0.83\pm0.03$ and $n_s= 0.97\pm0.02$ based on \ion{H}{i} absorption in the range $2.1

We measure the large-scale cross-correlation of quasars with the Lyman \alpha\ forest absorption in redshift space, using ~ 60000 quasar spectra from Data Release 9 (DR9) of the Baryon Oscillation Spectroscopic Survey (BOSS). The cross-correlation is detected over a wide range of scales, up to comoving separations r of 80 Mpc/h. For r > 15 Mpc/h, we show that the cross-correlation is well fitted by the linear theory prediction for the mean overdensity around a quasar host halo in the standard \Lambda CDM model, with the redshift distortions indicative of gravitational evolution detected at high confidence. Using previous determinations of the Lyman \alpha\ forest bias factor obtained from the Lyman \alpha\ autocorrelation, we infer the quasar bias factor to be b_q = 3.64^+0.13_-0.15 at a mean redshift z=2.38, in agreement with previous measurements from the quasar auto-correlation. We also obtain a new estimate of the Lyman \alpha\ forest redshift distortion factor, \beta_F = 1.1 +/- 0.15, slightly larger than but consistent with the previous measurement from the Lyman \alpha\ forest autocorrelation. The simple linear model we use fails at separations r < 15 Mpc/h, and we show that this may reasonably be due to the enhanced ionization due to radiation from the quasars. We also provide the expected correction that the mass overdensity around the quasar implies for measurements of the ionizing radiation background from the line-of-sight proximity effect., Comment: 24 pages, 6 figures, published in JCAP

We use the Baryon Oscillation Spectroscopic Survey (BOSS) Data Release 9 (DR9) to detect and measure the position of the Baryonic Acoustic Oscillation (BAO) feature in the three-dimensional correlation function in the Lyman-alpha forest flux fluctuations at a redshift z=2.4. The feature is clearly detected at significance between 3 and 5 sigma (depending on the broadband model and method of error covariance matrix estimation) and is consistent with predictions of the standard LCDM model. We assess the biases in our method, stability of the error covariance matrix and possible systematic effects. We fit the resulting correlation function with several models that decouple the broadband and acoustic scale information. For an isotropic dilation factor, we measure 100x(alpha_iso-1) = -1.6 ^{+2.0+4.3+7.4}_{-2.0-4.1-6.8} (stat.) +/- 1.0 (syst.) (multiple statistical errors denote 1,2 and 3 sigma confidence limits) with respect to the acoustic scale in the fiducial cosmological model (flat LCDM with Omega_m=0.27, h=0.7). When fitting separately for the radial and transversal dilation factors we find marginalised constraints 100x(alpha_par-1) = -1.3 ^{+3.5+7.6 +12.3}_{-3.3-6.7-10.2} (stat.) +/- 2.0 (syst.) and 100x(alpha_perp-1) = -2.2 ^{+7.4+17}_{-7.1-15} +/- 3.0 (syst.). The dilation factor measurements are significantly correlated with cross-correlation coefficient of ~ -0.55. Errors become significantly non-Gaussian for deviations over 3 standard deviations from best fit value. Because of the data cuts and analysis method, these measurements give tighter constraints than a previous BAO analysis of the BOSS DR9 Lyman-alpha forest sample, providing an important consistency test of the standard cosmological model in a new redshift regime., Comment: v2: replaced with version accepted by JCAP: a few co-authors, modest expansion and clarification of the text, references added, no change in results

We describe fitting methods developed to analyze fluctuations in the Lyman-{\alpha} forest and measure the parameters of baryon acoustic oscillations (BAO). We apply our methods to BOSS Data Release 9. Our method is based on models of the three-dimensional correlation function in physical coordinate space, and includes the effects of redshift-space distortions, anisotropic non-linear broadening, and broadband distortions. We allow for independent scale factors along and perpendicular to the line of sight to minimize the dependence on our assumed fiducial cosmology and to obtain separate measurements of the BAO angular and relative velocity scales. Our fitting software and the input files needed to reproduce our main BOSS Data Release 9 results are publicly available., Comment: Submitted to JCAP, 38 pages, 26 figures

We present the BOSS Lyman-alpha (Lya) Forest Sample from SDSS Data Release 9, comprising 54,468 quasar spectra with zqso > 2.15 suitable for Lya forest analysis. This data set probes the intergalactic medium with absorption redshifts 2.0 < z_alpha < 5.7 over an area of 3275 square degrees, and encompasses an approximate comoving volume of 20 h^-3 Gpc^3. With each spectrum, we have included several products designed to aid in Lya forest analysis: improved sky masks that flag pixels where data may be unreliable, corrections for known biases in the pipeline estimated noise, masks for the cores of damped Lya systems and corrections for their wings, and estimates of the unabsorbed continua so that the observed flux can be converted to a fractional transmission. The continua are derived using a principal component fit to the quasar spectrum redwards of restframe Lya (lambda > 1216 Ang), extrapolated into the forest region and normalized by a linear function to fit the expected evolution of the Lya forest mean-flux. The estimated continuum errors are ~5% rms. We also discuss possible systematics arising from uncertain spectrophotometry and artifacts in the flux calibration; global corrections for the latter are provided. Our sample provides a convenient starting point for users to analyze clustering in BOSS Lya forest data, and it provides a fiducial data set that can be used to compare results from different analyses of baryon acoustic oscillations in the Lya forest. The full data set is available from the SDSS-III DR9 web site., Comment: 15 pages, 11 figures; Submitted to AJ

We measure the sum of the neutrino particle masses using the three-dimensional galaxy power spectrum of the SDSS-III Baryon Oscillation Spectroscopic Survey (BOSS) Data Release 9 (DR9) CMASS galaxy sample. Combined with the cosmic microwave background (CMB), supernova (SN) and additional baryonic acoustic oscillation (BAO) data, we find upper 95 percent confidence limits of the neutrino mass $\Sigma m_{\nu}<0.340$ eV within a flat $\Lambda$CDM background, and $\Sigma m_{\nu}<0.821$ eV, assuming a more general background cosmological model. The number of neutrino species is measured to be $N_{\rm eff}=4.308\pm0.794$ and $N_{\rm eff}=4.032^{+0.870}_{-0.894}$ for these two cases respectively. We study and quantify the effect of several factors on the neutrino measurements, including the galaxy power spectrum bias model, the effect of redshift-space distortion, the cutoff scale of the power spectrum, and the choice of additional data. The impact of neutrinos with unknown masses on other cosmological parameter measurements is investigated. The fractional matter density and the Hubble parameter are measured to be $\Omega_M=0.2796\pm0.0097$, $H_0=69.72^{+0.90}_{-0.91}$ km/s/Mpc (flat $\Lambda$CDM) and $\Omega_M=0.2798^{+0.0132}_{-0.0136}$, $H_0=73.78^{+3.16}_{-3.17}$ km/s/Mpc (more general background model). Based on a Chevallier-Polarski-Linder (CPL) parametrisation of the equation-of-state $w$ of dark energy, we find that $w=-1$ is consistent with observations, even allowing for neutrinos. Similarly, the curvature \Omega_K and the running of the spectral index $\alpha_s$ are both consistent with zero. The tensor-to-scaler ratio is constrained down to $r<0.198$ (95 percent CL, flat $\Lambda$ CDM) and $r<0.440$ (95 percent CL, more general background model)., Comment: 18 pages, 19 figures, 8 tables, matches the published version in MNRAS

We report a detection of the baryon acoustic oscillation (BAO) feature in the three-dimensional correlation function of the transmitted flux fraction in the \Lya forest of high-redshift quasars. The study uses 48,640 quasars in the redshift range $2.1\le z \le 3.5$ from the Baryon Oscillation Spectroscopic Survey (BOSS) of the third generation of the Sloan Digital Sky Survey (SDSS-III). At a mean redshift $z=2.3$, we measure the monopole and quadrupole components of the correlation function for separations in the range $20\hMpc

We present the Data Release 9 Quasar (DR9Q) catalog from the Baryon Oscillation Spectroscopic Survey (BOSS) of the Sloan Digital Sky Survey III. The catalog includes all BOSS objects that were targeted as quasar candidates during the survey, are spectrocopically confirmed as quasars via visual inspection, have luminosities Mi[z=2]<-20.5 (in a $\Lambda$CDM cosmology with H0 = 70 km/s/Mpc, $\Omega_{\rm M}$ = 0.3, and $\Omega_{\Lambda}$ = 0.7) and either display at least one emission line with full width at half maximum (FWHM) larger than 500 km/s or, if not, have interesting/complex absorption features. It includes as well, known quasars (mostly from SDSS-I and II) that were reobserved by BOSS. This catalog contains 87,822 quasars (78,086 are new discoveries) detected over 3,275 deg$^{2}$ with robust identification and redshift measured by a combination of principal component eigenspectra newly derived from a training set of 8,632 spectra from SDSS-DR7. The number of quasars with $z>2.15$ (61,931) is ~2.8 times larger than the number of z>2.15 quasars previously known. Redshifts and FWHMs are provided for the strongest emission lines (CIV, CIII], MgII). The catalog identifies 7,533 broad absorption line quasars and gives their characteristics. For each object the catalog presents five-band (u,g,r,i,z) CCD-based photometry with typical accuracy of 0.03 mag, and information on the morphology and selection method. The catalog also contains X-ray, ultraviolet, near-infrared, and radio emission properties of the quasars, when available, from other large-area surveys., Comment: Accepted for publication in A&A, Catalog available online at http://www.sdss3.org/dr9/algorithms/qso_catalog.php

We present the first measurement of the large-scale cross-correlation of Lyman alpha forest absorption and Damped Lyman alpha systems (DLA), using the 9th Data Release of the Baryon Oscillation Spectroscopic Survey (BOSS). The cross-correlation is clearly detected on scales up to 40 Mpc/h and is well fitted by the linear theory prediction of the standard Cold Dark Matter model of structure formation with the expected redshift distortions, confirming its origin in the gravitational evolution of structure. The amplitude of the DLA-Lyman alpha cross-correlation depends on only one free parameter, the bias factor of the DLA systems, once the Lyman alpha forest bias factors are known from independent Lyman alpha forest correlation measurements. We measure the DLA bias factor to be b_D = (2.17 +/- 0.20) beta_F^{0.22}, where the Lyman alpha forest redshift distortion parameter beta_F is expected to be above unity. This bias factor implies a typical host halo mass for DLAs that is much larger than expected in present DLA models, and is reproduced if the DLA cross section scales with halo mass as M_h^alpha, with alpha= 1.1 +/- 0.1 for beta_F=1. Matching the observed DLA bias factor and rate of incidence requires that atomic gas remains extended in massive halos over larger areas than predicted in present simulations of galaxy formation, with typical DLA proper sizes larger than 20 kpc in host halos of masses ~ 10^12 solar masses. We infer that typical galaxies at z ~ 2 to 3 are surrounded by systems of atomic clouds that are much more extended than the luminous parts of galaxies and contain ~ 10% of the baryons in the host halo., Comment: 43 pages

The Baryon Oscillation Spectroscopic Survey (BOSS) is designed to measure the scale of baryon acoustic oscillations (BAO) in the clustering of matter over a larger volume than the combined efforts of all previous spectroscopic surveys of large scale structure. BOSS uses 1.5 million luminous galaxies as faint as i=19.9 over 10,000 square degrees to measure BAO to redshifts z<0.7. Observations of neutral hydrogen in the Lyman alpha forest in more than 150,000 quasar spectra (g<22) will constrain BAO over the redshift range 2.15