122 results on '"Mina Farag"'
Search Results
2. Male–female differences following concomitant coronary artery bypass grafting and aortic valve replacement surgery
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Rebecca Krey, Moritz Jakob, Matthias Karck, Rawa Arif, and Mina Farag
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Aortic valve replacement ,Coronary revascularization ,Disparities ,Male–female differences ,Mortality ,Outcome ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Abstract Aims Combined coronary artery bypass grafting (CABG) and aortic valve replacement (AVR), and female sex are associated with increased perioperative mortality in clinical risk scores. This study investigated male–female differences in short‐term outcome stratified by age groups. Methods and results All patients undergoing AVR and CABG between January 2001 and June 2021 at our institution were included. 1963 patients were grouped by decades into: 59 years and younger (n = 127), 60–69 (n = 471), 70–79 (n = 1070), and 80 years and older (n = 295). The primary end points of this study were 30 and 180 days mortality. Secondary end points were influence of preoperative risk factors and impact of sex on survival and postoperative major adverse events. Female patients showed higher 30 and 180 days mortality after combined CABG and AVR surgery (8.3% vs. 4.2%, P
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- 2024
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3. Correction: Establishment of persistent enteric mycobacterial infection following streptomycin pre-treatment
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Shannon C. Duffy, Andréanne Lupien, Youssef Elhaji, Mina Farag, Victoria Marcus, and Marcel A. Behr
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Diseases of the digestive system. Gastroenterology ,RC799-869 - Published
- 2024
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4. Establishment of persistent enteric mycobacterial infection following streptomycin pre-treatment
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Shannon C. Duffy, Andréanne Lupien, Youssef Elhaji, Mina Farag, Victoria Marcus, and Marcel A. Behr
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Mycobacterium avium subsp. paratuberculosis ,Paratuberculosis ,Crohn’s disease ,Mouse models ,Mycobacterium avium subsp. hominissuis ,Mycobacterium bovis ,Diseases of the digestive system. Gastroenterology ,RC799-869 - Abstract
Abstract Mycobacterium avium subsp. paratuberculosis (MAP) is the causative agent of paratuberculosis, a chronic gastrointestinal disease affecting ruminants. This disease remains widespread in part due to the limitations of available diagnostics and vaccines. A representative small animal model of disease could act as a valuable tool for studying its pathogenesis and to develop new methods for paratuberculosis control, but current models are lacking. Streptomycin pre-treatment can reduce colonization resistance and has previously been shown to improve enteric infection in a Salmonella model. Here, we investigated whether streptomycin pre-treatment of mice followed by MAP gavage could act as a model of paratuberculosis which mimics the natural route of infection and disease development in ruminants. The infection outcomes of MAP were compared to M. avium subsp. hominissuis (MAH), an environmental mycobacterium, and M. bovis and M. orygis, two tuberculous mycobacteria. Streptomycin pre-treatment was shown to consistently improve bacterial infection post-oral inoculation. This model led to chronic MAP infection of the intestines and mesenteric lymph nodes (MLNs) up to 24-weeks post-gavage, however there was no evidence of inflammation or disease. These infection outcomes were found to be specific to MAP. When the model was applied to a bacterium of lesser virulence MAH, the infection was comparatively transient. Mice infected with bacteria of greater virulence, M. bovis or M. orygis, developed chronic intestinal and MLN infection with pulmonary disease similar to zoonotic TB. Our findings suggest that a streptomycin pre-treatment mouse model could be applied to future studies to improve enteric infection with MAP and to investigate other modifications underlying MAP enteritis.
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- 2023
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5. Surgical Treatment of Atrial Septal Defects
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Philippe Grieshaber, Christoph Jaschinski, Mina Farag, Elizabeth Fonseca-Escalante, Matthias Gorenflo, Matthias Karck, and Tsvetomir Loukanov
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atrial septal defect ,surgery ,congenital heart disease ,operative technique ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Atrial septal defects (ASDs) are among the most prevalent congenital cardiac malformations. Closure of the defect and repair of associated cardiac malformations are typically indicated if an ASD is hemodynamically significant or symptomatic. This narrative review aims to summarize key aspects of surgical ASD closures. A non-systematic literature review was conducted to cover surgically relevant aspects of (developmental) anatomy, morphology, and treatment. ASDs result from diverse developmental alterations, leading to subtype-specific associated cardiac malformations, meaning surgical therapy varies accordingly. Presently, surgical repair yields excellent outcomes for all ASD subtypes, with minimally invasive approaches, especially in adults, increasingly employed for ASD closure. Surgical ASD repair is safe with excellent results. However, familiarity with ASD subtypes and typically associated lesions is crucial for optimal patient management.
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- 2024
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6. Phase separation of protein mixtures is driven by the interplay of homotypic and heterotypic interactions
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Mina Farag, Wade M. Borcherds, Anne Bremer, Tanja Mittag, and Rohit V. Pappu
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Science - Abstract
Abstract Prion-like low-complexity domains (PLCDs) are involved in the formation and regulation of distinct biomolecular condensates that form via phase separation coupled to percolation. Intracellular condensates often encompass numerous distinct proteins with PLCDs. Here, we combine simulations and experiments to study mixtures of PLCDs from two RNA-binding proteins, hnRNPA1 and FUS. Using simulations and experiments, we find that 1:1 mixtures of A1-LCD and FUS-LCD undergo phase separation more readily than either of the PLCDs on their own due to complementary electrostatic interactions. Tie line analysis reveals that stoichiometric ratios of different components and their sequence-encoded interactions contribute jointly to the driving forces for condensate formation. Simulations also show that the spatial organization of PLCDs within condensates is governed by relative strengths of homotypic versus heterotypic interactions. We uncover rules for how interaction strengths and sequence lengths modulate conformational preferences of molecules at interfaces of condensates formed by mixtures of proteins.
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- 2023
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7. Condensates formed by prion-like low-complexity domains have small-world network structures and interfaces defined by expanded conformations
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Mina Farag, Samuel R. Cohen, Wade M. Borcherds, Anne Bremer, Tanja Mittag, and Rohit V. Pappu
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Science - Abstract
Abstract Biomolecular condensates form via coupled associative and segregative phase transitions of multivalent associative macromolecules. Phase separation coupled to percolation is one example of such transitions. Here, we characterize molecular and mesoscale structural descriptions of condensates formed by intrinsically disordered prion-like low complexity domains (PLCDs). These systems conform to sticker-and-spacers architectures. Stickers are cohesive motifs that drive associative interactions through reversible crosslinking and spacers affect the cooperativity of crosslinking and overall macromolecular solubility. Our computations reproduce experimentally measured sequence-specific phase behaviors of PLCDs. Within simulated condensates, networks of reversible inter-sticker crosslinks organize PLCDs into small-world topologies. The overall dimensions of PLCDs vary with spatial location, being most expanded at and preferring to be oriented perpendicular to the interface. Our results demonstrate that even simple condensates with one type of macromolecule feature inhomogeneous spatial organizations of molecules and interfacial features that likely prime them for biochemical activity.
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- 2022
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8. Early versus Delayed Surgery in Patients with Left-Sided Infective Endocarditis and Stroke
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Jamila Kremer, Joshua Jahn, Sabrina Klein, Mina Farag, Tobias Borst, and Matthias Karck
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infective endocarditis (IE) ,stroke ,timing of surgery ,valve surgery ,neurological complications ,cerebral embolism ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Background: Timing of surgery remains controversial in patients with infective endocarditis and stroke. Guidelines on infective endocarditis suggest delaying surgery for up to 4 weeks. However, with early heart failure due to progression of the infection or recurrent septic embolism, urgent surgery becomes imperative. Methods: Out of 688 patients who were surgically treated for left-sided infective endocarditis, 187 presented with preoperative neurological events. The date of cerebral stroke onset was documented in 147 patients. The patients were stratified according to timing of surgery: 61 in the early group (0–7 days) vs. 86 in the delayed group (>7 days). Postoperative neurological outcome was assessed by the modified Rankin Scale. Results: Preoperative sepsis was more prevalent in patients with preoperative neurological complications (46.0% vs. 29.5%, p < 0.001). Patients with haemorrhagic stroke were operated on later (19.8% vs. 3.3%, p = 0.003). Postoperative cerebrovascular accidents were comparable between both groups (p = 0.13). Overall, we observed good neurological outcomes (p = 0.80) and a high recovery rate, with only 5% of cases showing neurological deterioration after surgery (p = 0.29). In-hospital mortality and long-term survival were not significantly different in the early and delayed surgery groups (log-rank, p = 0.22). Conclusions: Early valve surgery in high-risk patients with infective endocarditis and stroke can be performed safely and is not associated with worse outcomes.
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- 2023
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9. Indications, Complications, and Outcomes of Cardiac Surgery After Heart Transplantation: Results From the Cash Study
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Johannes Gökler, Arezu Z. Aliabadi-Zuckermann, Alexandra Kaider, Amrut V. Ambardekar, Herwig Antretter, Panagiotis Artemiou, Alejandro M. Bertolotti, Udo Boeken, Vicens Brossa, Hannah Copeland, Maria Generosa Crespo-Leiro, Andrea Eixerés-Esteve, Eric Epailly, Mina Farag, Michal Hulman, Kiran K. Khush, Marco Masetti, Jignesh Patel, Heather J. Ross, Igor Rudež, Scott Silvestry, Sofia Martin Suarez, Amanda Vest, and Andreas O. Zuckermann
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cardiac transplantation ,heart transplantation ,cardiac surgery ,heart failure ,cardiac retransplantation ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
BackgroundAllograft pathologies, such as valvular, coronary artery, or aortic disease, may occur early and late after cardiac transplantation. Cardiac surgery after heart transplantation (CASH) may be an option to improve quality of life and allograft function and prolong survival. Experience with CASH, however, has been limited to single-center reports.MethodsWe performed a retrospective, multicenter study of heart transplant recipients with CASH between January 1984 and December 2020. In this study, 60 high-volume cardiac transplant centers were invited to participate.ResultsData were available from 19 centers in North America (n = 7), South America (n = 1), and Europe (n = 11), with a total of 110 patients. A median of 3 (IQR 2–8.5) operations was reported by each center; five centers included ≥ 10 patients. Indications for CASH were valvular disease (n = 62), coronary artery disease (CAD) (n = 16), constrictive pericarditis (n = 17), aortic pathology (n = 13), and myxoma (n = 2). The median age at CASH was 57.7 (47.8–63.1) years, with a median time from transplant to CASH of 4.4 (1–9.6) years. Reoperation within the first year after transplantation was performed in 24.5%. In-hospital mortality was 9.1% (n = 10). 1-year survival was 86.2% and median follow-up was 8.2 (3.8–14.6) years. The most frequent perioperative complications were acute kidney injury and bleeding revision in 18 and 9.1%, respectively.ConclusionCardiac surgery after heart transplantation has low in-hospital mortality and postoperative complications in carefully selected patients. The incidence and type of CASH vary between international centers. Risk factors for the worse outcome are higher European System for Cardiac Operative Risk Evaluation (EuroSCORE II) and postoperative renal failure.
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- 2022
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10. Temporary right ventricular circulatory support following right ventricular infarction: results of a groin‐free approach
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Jamila Kremer, Mina Farag, Andreas Brcic, Alina Zubarevich, Joel Schamroth, Michael M. Kreusser, Matthias Karck, Arjang Ruhparwar, and Bastian Schmack
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Temporary circulatory support ,Myocardial infarction ,Assist device ,Percutaneous implantation ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Abstract Aims Acute right heart failure (RHF) is a severe complication of right ventricular infarction. The management of acute RHF poses a number of challenges, such as providing haemodynamic support. Temporary circulatory support (TCS) may be required upon failing medical therapy. The ProtekDuo® dual lumen cannula provides a minimally invasive option for (TCS) through a groin‐free internal jugular vein approach. We present the largest patient series to date using the ProtekDuo® cannula as temporary right ventricular assist device (t‐RVAD) in RHF after acute myocardial infarction (MI). Methods and results From July 2016 to November 2019, 10 patients underwent t‐RVAD implantation for RHF following acute MI. Transthoracic and transoesophageal echocardiography were performed in all patients to assess cardiac function, with a particular focus on RV function. Cumulative 30‐day survival was 60%. Mean TAPSE was 6.4 ± 3.1 mm, mean fractional area change was 12.1 ± 4.2%, and mean right ventricular end diastolic area was 19.8 ± 2.7 cm2. Mean implantation time was 32.8 ± 8.3 min. Mean interval after first cardiac intervention was 4.6 ± 5.8 days. Mean t‐RVAD time was 10.0 ± 7.4 days with a significant reduction in central venous pressure 19.3 ± 2.7 vs. 8.2 ± 2.6 mmHg, P
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- 2020
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11. New Wound Management of Driveline Infections with Cold Atmospheric Plasma
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Jamila Kremer, Étienne Fasolt Richard Corvin Meinert, Mina Farag, Florian Mueller, Jasmin Penelope Soethoff, Matthias Karck, Bastian Schmack, Anna Lassia Meyer, and Gregor Warnecke
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left ventricular assist device ,wound infection ,driveline infection ,mechanical circulatory support ,cold atmospheric argon plasma ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
The use of ventricular assist devices as a bridge to transplant or as destination therapy has increased. Wound complications increase morbidity in this cohort. Cold atmospheric plasma is a source of reactive oxygen and nitrogen species and can reduce the microbial load in skin wounds without negative effects on the surrounding tissue. We evaluated our cold atmospheric plasma treatment for LVAD driveline infections in a retrospective single-center study for peri- and postintervention outcome analysis. Between April 2019 and September 2019, 15 male patients were included (5 HVAD, 10 HeartMate III). The wounds were treated for a mean of 368.5 s with a reduction of bacterial load in treated wounds in 60% of patients, regardless of the pathogen. The most common pathogen was staphylococcus aureus (n = 8 patients). There was a significant reduction of the wound scale (scale 2.80 vs. 1.18; p < 0.001) plus a significant reduction in size (16.08 vs. 1.90 cm3; p = 0.047). Seven patients (46.6%) were free from any signs of local or systemic infection during 1-year follow-up. Five patients (33%) received a heart transplantation. Cold atmospheric plasma treatment is a potent, safe, and painless adjuvant technique for treating driveline infection without the need for repeating surgical interventions.
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- 2022
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12. Quantifying Coexistence Concentrations in Multi-Component Phase-Separating Systems Using Analytical HPLC
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Anne Bremer, Ammon E. Posey, Madeleine B. Borgia, Wade M. Borcherds, Mina Farag, Rohit V. Pappu, and Tanja Mittag
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phase separation ,biomolecular condensates ,coexistence line ,Microbiology ,QR1-502 - Abstract
Over the last decade, evidence has accumulated to suggest that numerous instances of cellular compartmentalization can be explained by the phenomenon of phase separation. This is a process by which a macromolecular solution separates spontaneously into dense and dilute coexisting phases. Semi-quantitative, in vitro approaches for measuring phase boundaries have proven very useful in determining some key features of biomolecular condensates, but these methods often lack the precision necessary for generating quantitative models. Therefore, there is a clear need for techniques that allow quantitation of coexisting dilute and dense phase concentrations of phase-separating biomolecules, especially in systems with more than one type of macromolecule. Here, we report the design and deployment of analytical High-Performance Liquid Chromatography (HPLC) for in vitro separation and quantification of distinct biomolecules that allows us to measure dilute and dense phase concentrations needed to reconstruct coexistence curves in multicomponent mixtures. This approach is label-free, detects lower amounts of material than is accessible with classic UV-spectrophotometers, is applicable to a broad range of macromolecules of interest, is a semi-high-throughput technique, and if needed, the macromolecules can be recovered for further use. The approach promises to provide quantitative insights into the balance of homotypic and heterotypic interactions in multicomponent phase-separating systems.
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- 2022
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13. Aortic arch replacement with frozen elephant trunk technique – a single-center study
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Jamila Kremer, Fabian Preisner, Bashar Dib, Ursula Tochtermann, Arjang Ruhparwar, Matthias Karck, and Mina Farag
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Aortic disease ,Frozen elephant trunk ,Follow-up downstream aorta ,Surgery ,RD1-811 ,Anesthesiology ,RD78.3-87.3 - Abstract
Abstract Background The frozen elephant trunk (FET) technique was developed to facilitate the two-stage surgery of extensive pathologies of the thoracic aorta and is now routinely applied in acute and chronic aortic syndromes. Methods From 11/2006 to 07/2017, 68 patients underwent aortic arch repair using the FET technique. Patients received either the Jotec E-vita Open graft (n = 57) or the Vascutek Thoraflex hybrid prosthesis (n = 11). Both, group 1 (acute aortic dissection type A and B; symptomatic penetrating aortic ulcer) and group 2 (aortic aneurysm; chronic aortic dissection) included 34 patients each. Results Early mortality was 13.2% (14.7% in group 1 vs. 11.7% in group 2, p = 0.720). Neurological complications occurred in 12 patients (17.6%) (stroke: 8.8 vs. 11.7%; p = 0.797 and spinal cord injury: 8.8 vs. 5.9%; p = 0.642 in groups 1 vs. 2 respectively). Cardiopulmonary bypass time and cross clamp time were significantly longer in group 1 (252.2 ± 73.5 and 148.3 ± 34 min vs. 189.2 ± 47.8 and 116.3 ± 34.5 min; p
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- 2019
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14. Hyperbilirubinaemia after cardiac surgery: the point of no return
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Mina Farag, Gabor Veres, Gabor Szabó, Arjang Ruhparwar, Matthias Karck, and Rawa Arif
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Hyperbilirubinaemia ,Liver failure ,Low‐output syndrome ,Cardiopulmonary bypass ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Abstract Aims The occurrence of hyperbilirubinaemia after heart surgery using cardiopulmonary bypass or post‐operative heart failure is fairly common. We investigated the incidence, predictive value, and post‐operative outcome of hyperbilirubinaemia after cardiac surgery in an effort to identify potential risk factors and significance on clinical outcome. Methods and results Between 2006 and 2016, 1272 (10.1%) out of 12 556 patients developed hyperbilirubinaemia, defined as bilirubin concentration >3 mg/dL, during post‐operative course at our institution. All patients who were operated using cardiopulmonary bypass were included. Hepatic dysfunction was diagnosed preoperatively in 200 patients (15.7%), whereas mean model of end‐stage liver disease score was 11.22 ± 4.99. Early mortality was 17.4% with age [hazard ratio (HR) 1.019, 95% confidence interval (CI) 1.008–1.029; P = 0.001], diabetes (HR 1.115, CI 1.020–1.220; P = 0.017), and emergent procedures (HR 1.315, CI 1.012–1.710) as multivariate predictors. Post‐operative predictors were low‐output syndrome (HR 3.193, 95% CI 2.495–4.086; P
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- 2019
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15. Long-Term Patency of Venous Conduits Targeting the Right Coronary Artery System—Single Is Superior to Sequential bypass Grafting
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Rawa Arif, Aglaia Warninck, Mina Farag, Wiebke Sommer, Florian Leuschner, Norbert Frey, Matthias Karck, Gregor Warnecke, and Nicolas A. Geis
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coronary artery disease (CAD) ,coronary artery bypass grafting (CABG) ,coronary artery graft patency ,right coronary artery ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Objective: Little is known about the fate of bypass grafts to the right coronary system. To investigate the long-term patency of venous bypass grafts directed to the right coronary artery (RCA) based on postoperative angiograms and to identify predictors of graft occlusion. Methods: In this single-center study, all patients who underwent coronary angiography from 2005 to 2021 after previously undergoing isolated coronary artery bypass grafting (CABG) were included. The primary endpoint was graft occlusion over a median follow-up of 9.1 years. Results: Among a total of 1106 patients (17.0% women, 64 (57–71) years median age), 289 (26.1%) received a sequential vein graft and 798 (72.2%) a single graft. Multivariate regression revealed age (HR 1.019, CI 95% 1.007–1.032), the urgency of CABG (HR 1.355, CI 95% 1.108–1.656), and severely impaired left ventricular function (HR 1.883, CI 95% 1.290–2.748), but not gender and chronic total occlusion (CTO) as predictive factors for graft occlusion. Single conduits were found to be a predictor of graft patency (HR 0.575 CI 95% 0.449–0.737). The angiographic outcome showed an overall 10-year freedom from graft occlusion of 73.4% ± 1.6%. The 5-year (10-year) freedom from graft occlusion was 76.9% ± 2.8% (57.8% ± 4.0%) for sequential grafts and 90.4% ± 1.1% (77.8% ± 1.7%) for single grafts (log-rank p < 0.001). Conclusions: In symptomatic patients with renewed angiography, venous bypass grafting of the RCA showed acceptable long-term patency rates. Single bypass grafting of the RCA was superior to sequential grafting, which needs to be further investigated.
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- 2022
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16. Modulating ATP binding cassette transporters in papillary renal cell carcinoma type 2 enhances its response to targeted molecular therapy
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Rola M. Saleeb, Mina Farag, Zsuzsanna Lichner, Fadi Brimo, Jenni Bartlett, Georg Bjarnason, Antonio Finelli, Fabio Rontondo, Michelle R. Downes, and George M. Yousef
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ABC transporters ,papillary renal cell carcinoma subtypes ,papillary renal cell carcinoma type 2 ,renal cell carcinoma cell lines ,targeted therapy ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Papillary renal cell carcinoma (PRCC) is the most common nonclear cell RCCs and is known to comprise two histological subtypes. PRCC2 is more aggressive and is molecularly distinct from the other subtypes. Despite this, PRCCs are treated together as one entity, and they show poor response to the current therapies that do not target pathways implicated in their pathogenesis. We have previously detected ABCC2 (an ABC transporter), VEGF, and mTOR pathways to be enriched in PRCC2. In this study, we assess the therapeutic potential of targeting these pathways in PRCC2. Twenty RCC cell lines from the Cancer Cell Encyclopedia were compared to the Cancer Genome Atlas PRCC cohort (290), to identify representative PRCC2 cell lines. Cell lines were further validated in xenograft models. Selected cell lines were treated in vitro and in vivo (mice models) under five different conditions, untreated, anti‐VEGF (sunitinib), ABCC2 blocker (MK571), mTOR inhibitor (everolimus) and sunitinib + MK571. Sunitinib +ABCC2 blocker group showed a significant response to therapy compared to the other treatment groups both in vitro (P ≤ 0.0001) and in vivo (P = 0.0132). ABCC2 blockage resulted in higher sunitinib uptake, both in vitro (P = 0.0016) and in vivo (P = 0.0031). Everolimus group demonstrated the second best response in vivo. The double‐treatment group showed the highest apoptotic rate and lowest proliferation rate. There is an urgent need for individualized therapies of RCC subtypes that take into account their specific biology. Our results demonstrate that combined targeted therapy with sunitinib and ABCC2 blocker in PRCC2 has therapeutic potential. The results are likewise potentially significant for other ABCC2 high tumors. However, the results are preliminary and clinical trials are needed to confirm these effects in PRCC2 patients.
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- 2018
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17. Extracorporeal life support with left ventricular decompression—improved survival in severe cardiogenic shock: results from a retrospective study
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Bastian Schmack, Philipp Seppelt, Alexander Weymann, Christina Alt, Mina Farag, Rawa Arif, Andreas O. Doesch, Philip W. Raake, Klaus Kallenbach, Ashham Mansur, Aron-Frederik Popov, Matthias Karck, and Arjang Ruhparwar
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Acute heart failure ,Cardiogenic shock ,Extracorporeal circulation ,ECLS ,ECMO ,Medicine ,Biology (General) ,QH301-705.5 - Abstract
Objective Extracorporeal life support (ECLS) is a life-saving procedure used in the treatment of severe cardiogenic shock. Within this retrospective single centre study, we examined our experience in this critically ill patient cohort to assess outcomes and clinical parameters by comparison of ECLS with or without selective left ventricular decompression. Methods Between 2004 and 2014 we evaluated 48 adult patients with INTERMACS level 1 heart failure (age 49.7 ± 19.5 years), who received either central ECLS with (n = 20, 41.7%) or ECLS without (n = 28, 58.3%, including 10 peripheral ECLS) integrated left ventricular vent in our retrospective single centre trial. Results Follow up was 100% with a mean of 0.83 ± 1.85 years. Bridge to ventricular assist device was feasible in 29.2% (n = 14), bridge to transplant in 10.4% (n = 5) and bridge to recovery in 8.3% (n = 4). Overall 30-day survival was 37.5%, 6-month survival 27.1% and 1-year survival 25.0%. ECLS support with left ventricular decompression showed favourable 30-day survival compared to ECLS without left ventricular decompression (p = 0.034). Thirty-day as well as long-term survival did not differ between the subgroups (central ECLS with vent, ECLS without vent and peripheral ECLS without vent). Multivariate logistic regression adjusted for age and gender revealed ECLS without vent as independent factor influencing 30-day survival. Conclusion ECLS is an established therapy for patients in severe cardiogenic shock. Independent of the ECLS approach, 30-day mortality is still high but with superior 30-day survival for patients with ECLS and left ventricular venting. Moreover, by unloading the ventricle, left ventricular decompression may provide an important time window for recovery or further treatment, such as bridge to bridge or bridge to transplant.
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- 2017
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18. Female Gender and Differences in Outcome after Isolated Coronary Artery Bypass Graft Surgery: Does Age Play a Role?
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Rawa Arif, Mina Farag, Victor Gertner, Gabor Szabó, Alexander Weymann, Gabor Veres, Arjang Ruhparwar, Raffi Bekeredjian, Tom Bruckner, Matthias Karck, Klaus Kallenbach, and Carsten J Beller
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Medicine ,Science - Abstract
Female gender is a known risk factor for early and late mortality after coronary artery bypass graft surgery (CABG). Higher age of women at operation may influence outcome, since age per se is also an important risk factor. The purpose of our study was to analyze possible gender differences in outcome after isolated CABG in different age groups to delineate the impact of female gender and age.All patients over 60 years of age undergoing isolated CABG at our department during 2001 and 2011 were included and categorized by age into sexagenarians (2266, 16.6% women), septuagenarians (2332, 25.4% women) and octogenarians (374, 32% women) and assessed by gender for 30-day and 180-day mortality.Thirty-day mortality was significantly higher in women only amongst septuagenarians (7.1 vs. 4.7%, p = 0.033). Same differences apply for 180-day mortality (12.3 vs. 8.2%, p = 0.033) and estimated one-year survival (81.6 ± 4.2 vs. 86.9 ± 2.2%, p = 0.001). Predictive factors for 30-day mortality of septuagenarian were logistic EuroSCORE (ES) (p = 0.003), perioperative myocardial infarction (MI) (p
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- 2016
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19. Ischemic Colitis after Cardiac Surgery: Can We Foresee the Threat?
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Rawa Arif, Mina Farag, Marcin Zaradzki, Christoph Reissfelder, Frank Pianka, Thomas Bruckner, Jamila Kremer, Maximilian Franz, Arjang Ruhparwar, Gabor Szabo, Carsten J Beller, Matthias Karck, Klaus Kallenbach, and Alexander Weymann
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Medicine ,Science - Abstract
Ischemic colitis (IC) remains a great threat after cardiac surgery with use of extracorporeal circulation. We aimed to identify predictive risk factors and influence of early catecholamine therapy for this disease.We prospectively collected and analyzed data of 224 patients, who underwent laparotomy due to IC after initial cardiac surgery with use of extracorporeal circulation during 2002 and 2014. For further comparability 58 patients were identified, who underwent bypass surgery, aortic valve replacement or combination of both. Age ±5 years, sex, BMI ± 5, left ventricular function, peripheral arterial disease, diabetes and urgency status were used for match-pair analysis (1:1) to compare outcome and detect predictive risk factors. Highest catecholamine doses during 1 POD were compared for possible predictive potential.Patients' baseline characteristics showed no significant differences. In-hospital mortality of the IC group with a mean age of 71 years (14% female) was significantly higher than the control group with a mean age of 70 (14% female) (67% vs. 16%, p
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- 2016
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20. Gender-specific differences in outcome of ascending aortic aneurysm surgery.
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Carsten J Beller, Mina Farag, Sepali Wannaku, Philipp Seppelt, Rawa Arif, Arjang Ruhparwar, Matthias Karck, Alexander Weymann, and Klaus Kallenbach
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Medicine ,Science - Abstract
Gender specific differences receive increasing attention and are known to affect the outcome of cardiovascular diseases. We investigated possible risk-factors for gender-specific differences in ascending aortic aneurysm surgery.548 consecutive patients (male: n = 390, age: 58.3 ± 14.4 years; female: n = 158, age: 65.3 ± 12.9 years) with aneurysms of the ascending aorta eligible for cardiac surgery were retrospectively analyzed.Women were significantly older when operation was indicated (p < 0.001) and presented with significantly more hypertension (p = 0.04) and chronic obstructive pulmonary disease (COPD; p = 0.017), whereas men had significantly more previous cardiac operations (p = 0.016). Normalized aortic diameters (diameter / body surface area) were significantly larger in women (3.10 ± 0.6 cm) vs. (2.75 ± 0,5 cm, p ≤ 0.001) in men, without differences in absolute values (5.74 ± 1.04 cm vs. 5.86 ± 1.34 cm). The aortic arch was significantly more involved in aneurysm formation in women (p = 0.04). Follow-up was available in 93% of the patients with a mean follow-up time of 3.9 ± 3.9 (0-17.8) years. 30-day mortality was 3.5% in men (n=12) and 7.9% in women (n = 11; p = 0.058). Univariate regression analysis shows gender specific risk factors for 30-day mortality in men to be age: p = 0.028; myocardial infarction: p = 0.0.24 and in women diameter of the ascending aorta: p = 0.014; renal insufficiency: p = 0.007. Long-term survival was significantly reduced in women (log-rank p = 0.0052).The outcome after surgery for ascending aortic aneurysm is less favourable in women with significantly reduced long-term survival and a trend to increased 30-day mortality in this cohort. Larger normalized aortic diameters, higher incidence of involvement of the aortic arch and differences in comorbidities may contribute to gender differences. Women undergo surgery at higher age and more progressed state of aortic disease. Therefore, gender-specific guidelines for ascending replacement may be useful to improve outcome in women.
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- 2015
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21. Dominance analysis to assess solute contributions to multicomponent phase equilibria.
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Daoyuan Qian, Ausserwoger, Hannes, Sneideris, Tomas, Mina Farag, Pappu, Rohit V., and Knowles, Tuomas P. J.
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PHASE equilibrium ,PHASE separation ,PHASE diagrams ,SMALL molecules ,AQUEOUS solutions - Abstract
Phase separation in aqueous solutions of macromolecules underlies the generation of biomolecular condensates in cells. Condensates are membraneless bodies, representing dense, macromolecule-rich phases that coexist with the dilute, macromolecule-deficient phases. In cells, condensates comprise hundreds of different macromolecular and small molecule solutes. How do different solutes contribute to the driving forces for phase separation? To answer this question, we introduce a formalism we term energy dominance analysis. This approach rests on analysis of shapes of the dilute phase boundaries, slopes of tie lines, and changes to dilute phase concentrations in response to perturbations of concentrations of different solutes. The framework is based solely on conditions for phase equilibria in systems with arbitrary numbers of macromolecules and solution components. Its practical application relies on being able to measure dilute phase concentrations of the components of interest. The dominance framework is both theoretically facile and experimentally applicable. We present the formalism that underlies dominance analysis and establish its accuracy and flexibility by deploying it to analyze phase diagrams probed in simulations and in experiments. [ABSTRACT FROM AUTHOR]
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- 2024
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22. Programmable synthetic biomolecular condensates for cellular control
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Yifan Dai, Mina Farag, Dongheon Lee, Xiangze Zeng, Kyeri Kim, Hye-in Son, Xiao Guo, Jonathan Su, Nikhil Peterson, Javid Mohammed, Max Ney, Daniel Mark Shapiro, Rohit V. Pappu, Ashutosh Chilkoti, and Lingchong You
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Cell Biology ,Molecular Biology - Published
- 2023
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23. Phase Separation in Mixtures of Prion-Like Low Complexity Domains is Driven by the Interplay of Homotypic and Heterotypic Interactions
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Rohit Pappu, Mina Farag, Wade Borcherds, Anne Bremer, and Tanja Mittag
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Article - Abstract
Prion-like low-complexity domains (PLCDs) are involved in the formation and regulation of distinct biomolecular condensates that form via coupled associative and segregative phase transitions. We previously deciphered how evolutionarily conserved sequence features drive phase separation of PLCDs through homotypic interactions. However, condensates typically encompass a diverse mixture of proteins with PLCDs. Here, we combine simulations and experiments to study mixtures of PLCDs from two RNA binding proteins namely, hnRNPA1 and FUS. We find that 1:1 mixtures of the A1-LCD and FUS-LCD undergo phase separation more readily than either of the PLCDs on their own. The enhanced driving forces for phase separation of mixtures of A1-LCD and FUS-LCD arise partly from complementary electrostatic interactions between the two proteins. This complex coacervation-like mechanism adds to complementary interactions among aromatic residues. Further, tie line analysis shows that stoichiometric ratios of different components and their sequence-encoded interactions jointly contribute to the driving forces for condensate formation. These results highlight how expression levels might be tuned to regulate the driving forces for condensate formationin vivo. Simulations also show that the organization of PLCDs within condensates deviates from expectations based on random mixture models. Instead, spatial organization within condensates will reflect the relative strengths of homotypic versus heterotypic interactions. We also uncover rules for how interaction strengths and sequence lengths modulate conformational preferences of molecules at interfaces of condensates formed by mixtures of proteins. Overall, our findings emphasize the network-like organization of molecules within multicomponent condensates, and the distinctive, composition-specific conformational features of condensate interfaces.Significance StatementBiomolecular condensates are mixtures of different protein and nucleic acid molecules that organize biochemical reactions in cells. Much of what we know about how condensates form comes from studies of phase transitions of individual components of condensates. Here, we report results from studies of phase transitions of mixtures of archetypal protein domains that feature in distinct condensates. Our investigations, aided by a blend of computations and experiments, show that the phase transitions of mixtures are governed by a complex interplay of homotypic and heterotypic interactions. The results point to how expression levels of different protein components can be tuned in cells to modulate internal structures, compositions, and interfaces of condensates, thus affording distinct ways to control the functions of condensates.
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- 2023
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24. Single fluorogen imaging reveals spatial inhomogeneities within biomolecular condensates
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Rohit Pappu, Tingting Wu, Matthew King, Mina Farag, and Matthew Lew
- Abstract
Recent investigations have suggested that biomolecular condensates are viscoelastic materials. This implies that material properties of condensates are governed by internal microstructures. Furthermore, computations show that the internal organization in protein condensates is spatially inhomogeneous, featuring hub-and-spoke-like percolated networks of molecules. Here, we test these predictions using imaging of single fluorogenic dyes that are turned-on in response to specific chemical microenvironments. We deployed Nile blue (NB), Nile red (NR), and merocyanine 540 (MC540) for epifluorescence and single-molecule localization microscopy imaging of condensates formed by intrinsically disordered, low-complexity domains of proteins. Imaging with NB reveals internal environments that are uniformly hydrophobic, whereas NR shows preferential binding to hubs that are more hydrophobic than the surrounding background within condensates. Finally, imaging with MC540 suggests that interfaces of condensates are unique chemical environments. Overall, the high spatiotemporal resolution and environmental sensitivity of single-fluorogen imaging reveals spatially inhomogeneous organization of molecules within condensates.
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- 2023
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25. FIREBALL: A tool to fit protein phase diagrams based on mean-field theories for polymer solutions
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Mina Farag, Alex S. Holehouse, Xiangze Zeng, and Rohit V. Pappu
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Biophysics ,Article - Abstract
Biomolecular condensates form via phase transitions of condensate-specific biomacromolecules. Intrinsically disordered regions (IDRs) featuring the appropriate sequence grammar can contribute homotypic and heterotypic interactions to the driving forces for phase separation of multivalent proteins. At this juncture, experiments and computations have matured to the point where the concentrations of coexisting dense and dilute phases can be quantified for individual IDRs in complex milieus bothin vitroandin vivo. For a macromolecule such as a disordered protein in a solvent, the locus of points that connects concentrations of the two coexisting phases defines a phase boundary or binodal. Often, only a few points along the binodal, especially in the dense phase, are accessible for measurement. In such cases and for quantitative and comparative analysis of parameters that describe the driving forces for phase separation, it is useful to fit measured or computed binodals to well-known mean-field free energies for polymer solutions. Unfortunately, the non-linearity of the underlying free energy functions makes it challenging to put mean-field theories into practice. Here, we present FIREBALL, a suite of computational tools designed to enable efficient construction, analysis, and fitting to experimental or computed data of binodals. We show that depending on the theory being used, one can also extract information regarding coil-to-globule transitions of individual macromolecules. Here, we emphasize the ease-of-use and utility of FIREBALL using examples based on data for two different IDRs.Statement of SignificanceMacromolecular phase separation drives the assembly of membraneless bodies known as biomolecular condensates. Measurements and computer simulations can now be brought to bear to quantify how the concentrations of macromolecules in coexisting dilute and dense phases vary with changes to solution conditions. These mappings can be fit to analytical expressions for free energies of solution to extract information regarding parameters that enable comparative assessments of the balance of macromolecule-solvent interactions across different systems. However, the underlying free energies are non-linear and fitting them to actual data is non-trivial. To enable comparative numerical analyses, we introduce FIREBALL, a user-friendly suite of computational tools that allows one to generate, analyze, and fit phase diagrams and coil-to-globule transitions using well-known theories.
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- 2023
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26. Phase Transitions of Associative Biomacromolecules
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Rohit V. Pappu, Samuel R. Cohen, Furqan Dar, Mina Farag, and Mrityunjoy Kar
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General Chemistry - Published
- 2023
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27. Single fluorogen imaging reveals spatial inhomogeneities within biomolecular condensates
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Tingting Wu, Matthew R. King, Mina Farag, Rohit V. Pappu, and Matthew D. Lew
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Article - Abstract
Recent investigations have suggested that biomolecular condensates are viscoelastic materials. This implies that material properties of condensates are governed by internal microstructures. Furthermore, computations show that the internal organization in protein condensates is spatially inhomogeneous, featuring hub-and-spoke-like percolated networks of molecules. Here, we test these predictions using imaging of single fluorogenic dyes that are turned-on in response to specific chemical microenvironments. We deployed Nile blue (NB), Nile red (NR), and merocyanine 540 (MC540) for epifluorescence and single-molecule localization microscopy imaging of condensates formed by intrinsically disordered, low-complexity domains of proteins. Imaging with NB reveals internal environments that are uniformly hydrophobic, whereas NR shows preferential binding to hubs that are more hydrophobic than the surrounding background within condensates. Finally, imaging with MC540 suggests that interfaces of condensates are unique chemical environments. Overall, the high spatiotemporal resolution and environmental sensitivity of single-fluorogen imaging reveals spatially inhomogeneous organization of molecules within condensates.
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- 2023
28. Adsorption of RNA to interfaces of biomolecular condensates enables wetting transitions
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Nadia A. Erkamp, Mina Farag, Daoyuan Qian, Tomas Sneideris, Timothy J. Welsh, Hannes Ausserwöger, David A. Weitz, Rohit V. Pappu, and Tuomas P. J. Knowles
- Abstract
Biomolecular condensates form via spontaneous and driven phase transitions of multivalent proteins and nucleic acids. These macromolecules can be organized in spatially inhomogeneous ways that lead to multiple coexisting dense phases with distinct macromolecular interfaces. While considerable attention has focused on the physical driving forces that give rise to phase separation from bulk solutions, the interactions that underlie adsorption driven wetting transitions remain unclear. Here, we report that pyrimidine-rich RNAs function as adsorbents that enable cascades of wetting transitions that include partial and complete wetting of condensates formed by purine-rich RNAs. Computations show that macromolecules that are scaffolds of condensates are oriented perpendicular to condensate interfaces whereas adsorbents are oriented parallel to interfaces. Our results yield heuristics for the design of synthetic materials that can be based on RNA-rich condensates featuring bespoke interfaces and distinct local microenvironments created by the interplay between scaffolds versus adsorbents.
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- 2023
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29. Deciphering how naturally occurring sequence features impact the phase behaviours of disordered prion-like domains
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Mina Farag, Rohit V. Pappu, Ivan Peran, Tanja Mittag, Wade Borcherds, Anne Bremer, and Erik W. Martin
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chemistry.chemical_classification ,Intrinsically Disordered Proteins ,Protein Domains ,Chemistry ,Chemical physics ,Prions ,Yield (chemistry) ,Phase (matter) ,General Chemical Engineering ,Sequence (biology) ,General Chemistry ,Prion protein ,Amino acid - Abstract
Prion-like low-complexity domains (PLCDs) have distinctive sequence grammars that determine their driving forces for phase separation. Here we uncover the physicochemical underpinnings of how evolutionarily conserved compositional biases influence the phase behaviour of PLCDs. We interpret our results in the context of the stickers-and-spacers model for the phase separation of associative polymers. We find that tyrosine is a stronger sticker than phenylalanine, whereas arginine is a context-dependent auxiliary sticker. In contrast, lysine weakens sticker-sticker interactions. Increasing the net charge per residue destabilizes phase separation while also weakening the strong coupling between single-chain contraction in dilute phases and multichain interactions that give rise to phase separation. Finally, glycine and serine residues act as non-equivalent spacers, and thus make the glycine versus serine contents an important determinant of the driving forces for phase separation. The totality of our results leads to a set of rules that enable comparative estimates of composition-specific driving forces for PLCD phase separation.
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- 2021
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30. Uncovering molecular grammars of intrinsically disordered regions that organize nucleolar fibrillar centers
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Matthew R. King, Andrew Z. Lin, Kiersten M. Ruff, Mina Farag, Wei Ouyang, Michael D. Vahey, Emma Lundberg, and Rohit V. Pappu
- Abstract
The nucleolus is a multilayered structure. Each layer is thought to be a compositionally distinct phase, although how these phases form and interface with one another remains unclear. Using computational, proteomics,in vitro, andin vivostudies, we uncover distinct molecular grammars within intrinsically disordered regions (IDRs) of nucleolar proteins that localize to fibrillar centers (FCs) and dense fibrillar components (DFCs). FC and DFC proteins feature two distinct types of IDRs namely those with long tracts of acidic residues and those with blocks of lysines interspersed by acid-rich-regions. We find that phase separation driven by complex coacervation in mixtures of nucleolar proteins, with their distinctive IDRs, and ribosomal DNA and RNA molecules is sufficient to drive the formation of structural facsimiles of FCs and DFCs.One-Sentence SummaryFacsimiles of core nucleolar substructures were reconstituted via phase separation of key protein and nucleic acid mixtures.
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- 2022
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31. Abstract 609: The predictive power of tertiary lymphoid structures in assessing response to trimodal therapy in muscle invasive bladder cancer
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Nour Hassan, José Joao Mansure, Mina Farag, Ronald Kool, Eva Michaud, Mohanned Alessa, Luis Souhami, Fabio Cury, Fadi Brimo, and Wassim Kassouf
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Cancer Research ,Oncology - Abstract
Introduction: Radical cystectomy is the standard of care for muscle invasive bladder cancer (MIBC). Radiotherapy (RT) is a bladder preserving option that offers patients comparable survival rates. However, up to 30% of patients require salvage cystectomy. Emerging evidence points to an important yet poorly understood link between response to RT and the tumor microenvironment (TME). Notably, tertiary lymphoid structures (TLS) are being investigated as a potential local hub for mounting an immune response. These lymph-node-like structures are highly organized with a B cell zone surrounded by T cells. Mature TLS also have an active germinal center (GC) with follicular dendritic cells. A number of studies correlated TLS with improved outcomes in several types of solid cancers. Here, we explore the use of TLS and its associated immune TME as a predictive biomarker for response to RT in MIBC. Methods: Hematoxylin and Eosin (H&E) stained formalin-fixed-paraffin-embedded sections of pre-RT biopsy from 147 MIBC patients were examined to identify TLS presence with confirmation from a pathologist. Subsequent multiplex immunohistochemistry (mIHC) staining with CD21 and CD23 characterized TLS maturity. To investigate the interaction between TLS and TME, tissue microarrays (TMAs) were constructed, and gene expression profiles were obtained for 106 patients using NanoString’s Digital Spatial technology. Moreover, the TMAs were stained with CD20, Neutrophil Elastase, CD68, CD8, CD4, and FoxP3 by mIHC. Image analysis was performed on the Halo platform. TLS gene signature was correlated to the immune infiltration and the patient outcomes. Results: H&E revealed that 19.7% of patients (n=68) had TLS with a GC, 17.0% (n=25) had TLS without a GC, and 12.9% (n=19) had no TLS. In the remaining 50.3% of cases (n=74), confirmation of TLS presence required staining with CD3 and CD20. Gene expression of TLS marker CXCL13 was higher among complete responders to RT (p-value=0.0440). This trend was weakened when we examined a previously described 12-chemokine TLS signature (p= 0.1506). When segregating patients into TLS high/TLS low groups based on the gene signature, we observed significantly higher infiltration of CD8+ T cells (p Citation Format: Nour Hassan, José Joao Mansure, Mina Farag, Ronald Kool, Eva Michaud, Mohanned Alessa, Luis Souhami, Fabio Cury, Fadi Brimo, Wassim Kassouf. The predictive power of tertiary lymphoid structures in assessing response to trimodal therapy in muscle invasive bladder cancer [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2023; Part 1 (Regular and Invited Abstracts); 2023 Apr 14-19; Orlando, FL. Philadelphia (PA): AACR; Cancer Res 2023;83(7_Suppl):Abstract nr 609.
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- 2023
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32. Condensates of disordered proteins have small-world network structures and interfaces defined by expanded conformations
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Mina Farag, Samuel R. Cohen, Wade M. Borcherds, Anne Bremer, Tanja Mittag, and Rohit V. Pappu
- Abstract
The formation of membraneless biomolecular condensates is driven by macromolecules with sticker-and-spacer architectures that undergo phase separation coupled to percolation (PSCP). Driving forces for PSCP are governed by the interplay between reversible inter-sticker crosslinks and solvation preferences of spacers. Here, we introduce molecular and mesoscale descriptions of structures within, outside, and at the interfaces of condensates that are formed by prion-like low complexity domains (PLCDs), which are exemplars of intrinsically disordered, linear multivalent proteins. Our studies are based on simulations that accurately describe sequence-specific phase behaviors of PLCDs. We find that networks of reversible, intermolecular, inter-sticker crosslinks organize PLCDs into small-world topologies within condensates. These topologies result from distinct conformational preferences within dense, dilute, and interfacial regions. Specifically, the degree of conformational expansion varies non-monotonically, being most expanded at the interface and most compact in the dilute phase with molecules preferring to be oriented perpendicular to condensate interfaces. This contrasts with dense and dilute phases where molecules are randomly oriented relative to one another. Our results demonstrate that even simple condensates, with only one type of macromolecule, feature inhomogeneous spatial organizations of molecules and interfacial features that likely prime them for being locations of biochemical activity.
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- 2022
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33. Phase behavior of intrinsically disordered prion‐like domains
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Tanja Mittag, Anne Bremer, Mina Farag, Wade M. Borcherds, and Rohit V. Pappu
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Genetics ,Molecular Biology ,Biochemistry ,Biotechnology - Published
- 2022
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34. Valence and patterning of aromatic residues determine the phase behavior of prion-like domains
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Mina Farag, Andrea Soranno, Tanja Mittag, Erik W. Martin, Christy R. Grace, Ivan Peran, J. Jeremías Incicco, Anne Bremer, Alex S. Holehouse, and Rohit V. Pappu
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Phase transition ,Magnetic Resonance Spectroscopy ,Multidisciplinary ,Valence (chemistry) ,Prions ,Chemistry ,Scattering ,Heterogeneous Nuclear Ribonucleoprotein A1 ,Phenylalanine ,Protein domain ,Nuclear magnetic resonance spectroscopy ,Phase Transition ,Article ,Protein Domains ,X-Ray Diffraction ,Chemical physics ,Phase (matter) ,Scattering, Small Angle ,Tyrosine ,Molecule ,Amino Acid Sequence ,Peptide sequence - Abstract
Not too sticky There is increasing evidence for a role of liquid-liquid phase separation (LLPS) in many cellular processes. Many proteins that undergo LLPS include prionlike domains (PLDs), which are enriched in polar amino acids and often interspersed with aromatic residues. Combining experimental data with simulations, Martin et al. quantified concentrations of PLDs in coexisting dilute and dense phases as a function of temperature and show that the phase behavior is determined by the number of aromatic residues and their patterning, with uniform patterning of aromatic residues promoting LLPS and inhibiting aggregation. They developed a sticker-and-spacers model that can predict the phase behavior of PLDs on the basis of their sequence. Science , this issue p. 694
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- 2020
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35. The Impact of Modifying Sunitinib Treatment Scheduling on Renal Cancer Tumor Biology and Resistance
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Harrison Sicheng Lin, Qiang Ding, Zsuzsanna Lichner, Sung Sun Kim, Rola Saleeb, Mina Farag, Ashley Di Meo, Pamela Plant, Mirit Kaldas, Georg Arnold Bjarnason, and George Makram Yousef
- Subjects
resistance ,renal cell carcinoma ,sunitinib ,Medicine ,treatment scheduling ,General Medicine ,Article - Abstract
With sunitinib treatment of metastatic renal cell carcinoma, most patients end up developing resistance over time. Recent clinical trials have shown that individualizing treatment protocols could delay resistance and result in better outcomes. We developed an in vivo xenograft tumor model and compared tumor growth rate, morphological, and transcriptomic differences between alternative and traditional treatment schedules. Our results show that the alternative treatment regime could delay/postpone cancer progression. Additionally, we identified distinct morphological changes in the tumor with alternative and traditional treatments, likely due to the significantly dysregulated signaling pathways between the protocols. Further investigation of the signaling pathways underlying these morphological changes may lead potential therapeutic targets to be used in a combined treatment with sunitinib, which offers promise in postponing/reversing the resistance of sunitinib.
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- 2022
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36. Mapping inhomogeneous network structures within biomolecular condensate using single-molecule imaging and tracking of fluorogenic probes
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Tingting Wu, Matthew R. King, Mina Farag, Rohit V. Pappu, and Matthew D. Lew
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Biophysics - Published
- 2023
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37. Complex coacervation contributes to the joint phase behaviors of mixtures of charge-deficient prion-like low-complexity domains
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Mina Farag, Anne Bremer, Wade M. Borcherds, Tanja Mittag, and Rohit V. Pappu
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Biophysics - Published
- 2023
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38. Modified Rouse-Zimm theory for computing sequence-specific viscoelastic properties of biomolecular condensates
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Samuel R. Cohen, Ibraheem Alshareedah, Wade M. Borcherds, Mina Farag, Tanja Mittag, Priya R. Banerjee, and Rohit V. Pappu
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Biophysics - Published
- 2023
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39. Uncovering the distinct roles of enthalpy and entropy that give rise to viscoelasticity in biomolecular condensates
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Ibraheem Alshareedah, Wade M. Borcherds, Anurag Singh, Samuel R. Cohen, Mina Farag, Rohit V. Pappu, Tanja Mittag, and Priya R. Banerjee
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Biophysics - Published
- 2023
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40. Are Sutureless and Rapid-Deployment Aortic Valves a Serious Alternative to TA-TAVI? A Matched-Pairs Analysis
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Mina Farag, Gábor Szabó, Rawa Arif, Florian Leuschner, Jamila Kremer, Matthias Karck, Sameer Al-Maisary, Sven T. Pleger, and Willem Hendrik Te Gussinklo
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Aortic valve ,medicine.medical_specialty ,Blood transfusion ,Heart block ,medicine.medical_treatment ,030204 cardiovascular system & hematology ,Article ,percutaneous (TAVI) ,03 medical and health sciences ,Coronary artery bypass surgery ,0302 clinical medicine ,Aortic valve replacement ,medicine ,030212 general & internal medicine ,Heart valve ,outcomes (includes mortality and morbidity) ,business.industry ,General Medicine ,heart valve ,aortic valve and root ,medicine.disease ,Surgery ,Log-rank test ,medicine.anatomical_structure ,Concomitant ,cardiovascular system ,Medicine ,transapical ,business - Abstract
Background: Transcatheter aortic valve implantation is a feasible alternative to conventional aortic valve replacement with expanding indication extending to low-risk patients. Sutureless and rapid-deployment aortic valves were developed to decrease procedural risks in conventional treatment. This paired-match analysis aims to compare patients undergoing surgical transcatheter aortic valve implantation to sutureless and rapid-deployment aortic valve implantation. Methods: Retrospective database analysis between 2010 and 2016 revealed 214 patients undergoing transcatheter aortic valve implantation procedures through surgical access (predominantly transapical) and 62 sutureless and rapid-deployment aortic valve procedures including 26 patients in need of concomitant coronary artery bypass surgery. After matching, 52 pairs of patients were included and analyzed. Results: In-hospital death (5.8% vs. 3.8%, p = 0.308) was comparable between transcatheter aortic valve implantation (mean age 77 ± 4.3 years) and sutureless and rapid-deployment aortic valve implantation groups (mean age 75 ± 4.0 years), including 32 females in each group. The logistic EuroSCORE was similar (19 ± 12 vs. 17 ± 10, p = 0.257). Postoperative renal failure (p = 0.087) and cerebrovascular accidents (p = 0.315) were without significant difference. The incidence of complete heart block requiring permanent pacemaker treatment was relatively low for both groups (1.9% vs. 7.7%, p = 0.169) for TAVI and sutureless and rapid-deployment valves respectively. Intraoperative use of blood transfusion was higher in the sutureless and rapid-deployment aortic valve implantation group (0.72 U vs. 1.46 U, p = 0.014). Estimated survival calculated no significant difference between both groups after 6 months (transcatheter aortic valve implantation: 74 ± 8% vs. sutureless and rapid-deployment aortic valve implantation: 92 ± 5%, log rank p = 0.097). Conclusion: Since sutureless and rapid-deployment aortic valve implantation is as safe and effective as transapical transcatheter aortic valve implantation, combining the advantage of standard diseased-valve removal with shorter procedural times, sutureless and rapid-deployment aortic valve replacement may be considered as an alternative for patients with elevated operative risk considered to be in the “gray zone” between transcatheter aortic valve implantation and conventional surgery, especially if concomitant myocardial revascularization is required.
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- 2021
41. 'Predatory publishing'
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Mina Farag, Matthias Karck, and Rawa Arif
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Pulmonary and Respiratory Medicine ,Political science ,Surgery ,Cardiology and Cardiovascular Medicine - Published
- 2019
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42. Integrated Molecular Analysis of Papillary Renal Cell Carcinoma and Precursor Lesions Unfolds Evolutionary Process from Kidney Progenitor-Like Cells
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Antonio Finelli, Fabio Rotondo, Pamela J. Plant, Rola Saleeb, Zsuzsanna Lichner, Michelle R Downes, Mina Farag, Qiang Ding, Fadi Brimo, George M. Yousef, and Georg A. Bjarnason
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Adenoma ,0301 basic medicine ,Pathology ,medicine.medical_specialty ,DNA Copy Number Variations ,Population ,Biology ,Kidney ,Pathology and Forensic Medicine ,Cohort Studies ,03 medical and health sciences ,0302 clinical medicine ,Biomarkers, Tumor ,Carcinoma ,medicine ,Humans ,Progenitor cell ,education ,Carcinoma, Renal Cell ,Cells, Cultured ,Chromosome Aberrations ,education.field_of_study ,Papillary renal cell carcinomas ,Stem Cells ,Papillary Adenoma ,Kidney metabolism ,Prognosis ,medicine.disease ,Carcinoma, Papillary ,Kidney Neoplasms ,030104 developmental biology ,medicine.anatomical_structure ,Case-Control Studies ,030220 oncology & carcinogenesis ,Kidney Failure, Chronic ,Kidney disease - Abstract
Papillary renal cell carcinoma (PRCC) is the most common type of RCC in end-stage kidney disease (ESKD). Papillary adenoma (PA) is a small benign lesion morphologically similar to PRCC and is suggested to be its precursor. PA is also prevalent in ESKD. The evolution of PAs to PRCCs and their relationship to ESKD are poorly understood. A total of 140 PAs, normal kidneys, ESKDs, and PRCCs were analyzed. Previously described markers of renal tubular progenitor cells were analyzed using immunohistochemistry and quantified with digital analysis. Progenitor cells were significantly increased in ESKD (P < 0.0001) and PAs (P = 0.02) in comparison with the normal kidney. Pathway analysis using global miRNA and chromosomal copy number variations revealed a common developmental theme between PA and the PRCCs. Whole exome sequencing showed a KMT2C-specific pathogenic mutation among all PAs and PRCCs. KMT2C is a chromosome 7 epigenetic regulator implicated in development and oncogenesis. Collectively, results show possible connection of PRCCs to PA and the progenitor-like cell population, which are increased in response to renal tubular injury. In addition, each PRCC histologic subtype had its own set of mutational changes, indicating divergence from a common precursor. The study reports previously unknown biological aspects of PRCC development and could influence current surveillance criteria and early detection strategies of PRCC tumors.
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- 2019
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43. Hyperbilirubinaemia after cardiac surgery: the point of no return
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Arjang Ruhparwar, Mina Farag, Gábor Veres, Matthias Karck, Rawa Arif, and Gábor Szabó
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Male ,medicine.medical_specialty ,lcsh:Diseases of the circulatory (Cardiovascular) system ,Time Factors ,Blood transfusion ,Bilirubin ,medicine.medical_treatment ,030204 cardiovascular system & hematology ,Risk Assessment ,law.invention ,03 medical and health sciences ,chemistry.chemical_compound ,Postoperative Complications ,0302 clinical medicine ,Risk Factors ,law ,Original Research Articles ,Internal medicine ,medicine ,Cardiopulmonary bypass ,Humans ,Original Research Article ,Prospective Studies ,030212 general & internal medicine ,Survival analysis ,Aged ,Hyperbilirubinemia ,business.industry ,Incidence ,Hazard ratio ,Liver failure ,Hyperbilirubinaemia ,Middle Aged ,Prognosis ,medicine.disease ,Confidence interval ,Cardiac surgery ,chemistry ,lcsh:RC666-701 ,Heart failure ,Low‐output syndrome ,Cardiology ,Female ,Cardiology and Cardiovascular Medicine ,business - Abstract
Aims The occurrence of hyperbilirubinaemia after heart surgery using cardiopulmonary bypass or post‐operative heart failure is fairly common. We investigated the incidence, predictive value, and post‐operative outcome of hyperbilirubinaemia after cardiac surgery in an effort to identify potential risk factors and significance on clinical outcome. Methods and results Between 2006 and 2016, 1272 (10.1%) out of 12 556 patients developed hyperbilirubinaemia, defined as bilirubin concentration >3 mg/dL, during post‐operative course at our institution. All patients who were operated using cardiopulmonary bypass were included. Hepatic dysfunction was diagnosed preoperatively in 200 patients (15.7%), whereas mean model of end‐stage liver disease score was 11.22 ± 4.99. Early mortality was 17.4% with age [hazard ratio (HR) 1.019, 95% confidence interval (CI) 1.008–1.029; P = 0.001], diabetes (HR 1.115, CI 1.020–1.220; P = 0.017), and emergent procedures (HR 1.315, CI 1.012–1.710) as multivariate predictors. Post‐operative predictors were low‐output syndrome (HR 3.193, 95% CI 2.495–4.086; P
- Published
- 2019
44. Early outcomes of patients with Marfan syndrome and acute aortic type A dissection
- Author
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Rawa Arif, Christian Hagl, J. Pöling, Tobias Krüger, Christopher Büsch, Mina Farag, Daniel Sebastian Dohle, Bartosz Rylski, Michael A. Borger, Matthias Karck, Tomas Holubec, Konstantinos Sarvanakis, Christian Detter, and Andreas Böning
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Pulmonary and Respiratory Medicine ,Marfan syndrome ,Aortic arch ,Aortic dissection ,medicine.medical_specialty ,business.industry ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Outcome analysis ,medicine.disease ,Surgery ,Matched cohort ,medicine.artery ,Propensity score matching ,medicine ,Type a dissection ,Cardiology and Cardiovascular Medicine ,business - Abstract
Acute aortic Stanford type A dissection remains a frequent and life-limiting event for patients with Marfan syndrome. Outcome results in this high-risk group are limited.The German Registry for Acute Aortic Dissection Type A collected the data of 56 centers between July 2006 and June 2015. Of 3385 patients undergoing operations for acute aortic Stanford type A dissection, 117 (3.5%) were diagnosed with Marfan syndrome. We performed a propensity score match comparing patients with Marfan syndrome with patients without Marfan syndrome in a 1:2 fashion.Patients with Marfan syndrome were significantly younger (42.9 vs 62.2 years; P .001), predominantly male (76.9% vs 62.9%; P = .002), and less catecholamine dependent (9.4% vs 20.3%; P = .002) compared with the unmatched cohort. They presented with aortic regurgitation (41.6% vs 23.0%; P .001) and involvement of the supra-aortic vessels (50.4% vs 39.5%; P = .017) more often. Propensity matching revealed 82 patients with Marfan syndrome (21 female) with no significant differences in baseline characteristics compared with patients without Marfan syndrome (n = 159, 36 female; P = .607). Although root preservation was more frequent in patients with Marfan syndrome, procedure types did not differ significantly (18.3% vs 10.7%; P = .256). Aortic arch surgery was performed more frequently in matched patients (87.5% vs 97.8%; P = .014). Thirty-day mortality did not differ between patients with and without Marfan syndrome (19.5% vs 20.1%; P = .910). Multivariate regression showed no influence of Marfan syndrome on 30-day mortality (odds ratio, 0.928; 95% confidence interval, 0.346-2.332; P = .876).Marfan syndrome does not adversely affect 30-day outcomes after surgical repair for acute aortic Stanford type A dissection compared with a matched cohort. Long-term outcome analysis is needed to account for the influence of further downstream interventions.
- Published
- 2021
45. The Application of Digital Platforms in Supporting UK International Medical Graduates
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Mina Farag and Idowu Olaogun
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business.industry ,overseas doctors ,General Engineering ,Psychological intervention ,uk imgs ,Face (sociological concept) ,doctors in training ,Future career ,030204 cardiovascular system & hematology ,Public relations ,National health service ,Quality Improvement ,03 medical and health sciences ,0302 clinical medicine ,Medical Education ,nhs ,Medicine ,National level ,Social media ,Communication skills ,business ,induction ,030217 neurology & neurosurgery - Abstract
Although international medical graduates (IMGs) constitute considerable percentage of doctors in the National Health Service (NHS), they face several challenges in acclimatizing to the NHS health system. Communication skills, language subtleties, and career progression difficulties are among the most important challenges that overseas doctors face. Some resources are already available to support these doctors and several trusts across the UK have developed local interventions and educational programs to help their doctors bridge the gaps in their knowledge. However, there is no proof of the external validity of these programs and none are identified as effective on a national level. Senior IMGs are leading very popular and inspiring projects using digital platforms, especially social media. We identified several social media pages, groups, and websites subscribed to by hundreds of thousands of doctors in the UK and around the world, including doctors who are planning a future career in the UK. These platforms provide information, resources, support, and answers to questions posed by junior IMGs. Inspired by these projects and also by an Australian project that transformed a local IMG education program, we studied whether using digital platforms and transforming evidence-based local programs to national ones would be the best way forward to support IMGs.
- Published
- 2020
46. Multicentre experience with the frozen elephant trunk technique to treat penetrating aortic ulcers involving the aortic arch
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Roman Gottardi, Mina Farag, Maximilian Kreibich, Tim Berger, Martin Czerny, Friedhelm Beyersdorf, Jamila Kremer, Andreas Vötsch, Matthias Siepe, Andreas Winkler, Bartosz Rylski, and Matthias Karck
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Pulmonary and Respiratory Medicine ,Aortic arch ,medicine.medical_specialty ,Elephant trunks ,Aorta, Thoracic ,030204 cardiovascular system & hematology ,03 medical and health sciences ,Blood Vessel Prosthesis Implantation ,0302 clinical medicine ,medicine.artery ,Ectasia ,Ascending aorta ,medicine ,Thoracic aorta ,Humans ,Stroke ,Ulcer ,Retrospective Studies ,Aorta ,Aortic Aneurysm, Thoracic ,business.industry ,Endovascular Procedures ,General Medicine ,Perioperative ,medicine.disease ,Surgery ,Blood Vessel Prosthesis ,Aortic Dissection ,Treatment Outcome ,030228 respiratory system ,cardiovascular system ,Cardiology and Cardiovascular Medicine ,business - Abstract
OBJECTIVES Our goal was to evaluate the use of the frozen elephant trunk (FET) technique for the treatment of penetrating aortic ulcers involving the aortic arch. METHODS Between January 2008 and January 2020, a total of 34 patients had the FET technique at 3 aortic centres. The indication for the FET technique was unsuitability for thoracic endovascular aortic repair due to the lack of a sufficient proximal landing zone even after supra-aortic rerouting (subclavian transposition, double transposition), ectasia of the ascending aorta/aortic arch (>40 mm) and/or a shaggy proximal thoracic aorta. RESULTS Additional cardiac procedures were performed in 14 patients (41%), and the beating heart technique was used in 7 patients (21%). Perioperative mortality was 18% (n = 6); 3 of these patients had a major stroke (9%). No case of spinal cord ischaemia was observed, and 2 patients (6%) developed a non-disabling stroke. After a median follow-up of 7 (first quartile: 1; third quartile 29) months, 2 patients (6%) died (1 of malignant disease and 1 of an unclear cause); 10 additional aortic interventions in all aortic segments (29%; endovascular: n = 8 [24%] and conventional surgical: n = 2 [6%]) were performed in 8 patients. CONCLUSIONS The FET technique is a good treatment option for patients with penetrating aortic ulcers involving the aortic arch unsuitable for thoracic endovascular aortic repair. However, the high obliterative atherosclerotic load in these patients is accompanied by an un-neglectable risk of perioperative neurological injury. Concomitant cardiac surgical procedures are frequently needed. Patients commonly require secondary aortic procedures in all aortic segments, emphasizing the need for thorough primary conceptual planning and stringent follow-up.
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- 2020
47. The Pathophysiology of Type 2 Diabetes Mellitus in Non-obese Individuals: An Overview of the Current Understanding
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Mina Farag, Pousettef Hamid, and Idowu Olaogun
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non-obese ,Mechanism (biology) ,business.industry ,Mortality rate ,Insulin ,medicine.medical_treatment ,Endocrinology/Diabetes/Metabolism ,General Engineering ,nutritional and metabolic diseases ,Type 2 Diabetes Mellitus ,030204 cardiovascular system & hematology ,medicine.disease ,Bioinformatics ,Obesity ,03 medical and health sciences ,0302 clinical medicine ,Insulin resistance ,medicine ,Sarcopenic obesity ,business ,type2 diabetes mellitus ,Body mass index ,pathophysiology ,030217 neurology & neurosurgery - Abstract
The pandemic of type 2 diabetes mellitus (T2DM) has been largely attributed to the increasing prevalence of worldwide obesity at a geometric rate. However, the number of non-obese patients with T2DM is also on the rise, and it is as high as 60-80% in some Asian countries. These non-obese individuals have certain peculiarities and have a higher mortality rate compared with obese individuals. The pathophysiology of T2DM in non-obese individuals remains poorly understood, and this has an impact on defining its management. This review discusses the current understanding of the pathophysiology of T2DM in non-obese individuals. The definition of T2DM in non-obese individuals remains controversial because of the limited clinical measurements, and the current definition of obesity using body mass index (BMI) is not very helpful as these individuals have BMIs of
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- 2020
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48. Temporary right ventricular circulatory support following right ventricular infarction: results of a groin-free approach
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Alina Zubarevich, Michael M. Kreusser, Jamila Kremer, Joel Schamroth, Arjang Ruhparwar, Matthias Karck, Andreas Brcic, Mina Farag, and Bastian Schmack
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Assist device ,Cardiac function curve ,medicine.medical_specialty ,Ventricular Dysfunction, Right ,Medizin ,Diastole ,030204 cardiovascular system & hematology ,Temporary circulatory support ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,medicine ,Diseases of the circulatory (Cardiovascular) system ,Humans ,030212 general & internal medicine ,Myocardial infarction ,Heart Failure ,Percutaneous implantation ,Univariate analysis ,business.industry ,Central venous pressure ,medicine.disease ,Cannula ,Right Ventricular Assist Device ,Treatment Outcome ,Infarction ,RC666-701 ,Heart failure ,Cardiology ,Heart-Assist Devices ,Cardiology and Cardiovascular Medicine ,business - Abstract
Aims: Acute right heart failure (RHF) is a severe complication of right ventricular infarction. The management of acute RHF poses a number of challenges, such as providing haemodynamic support. Temporary circulatory support (TCS) may be required upon failing medical therapy. The ProtekDuo® dual lumen cannula provides a minimally invasive option for (TCS) through a groin-free internal jugular vein approach. We present the largest patient series to date using the ProtekDuo® cannula as temporary right ventricular assist device (t-RVAD) in RHF after acute myocardial infarction (MI). Methods and results: From July 2016 to November 2019, 10 patients underwent t-RVAD implantation for RHF following acute MI. Transthoracic and transoesophageal echocardiography were performed in all patients to assess cardiac function, with a particular focus on RV function. Cumulative 30-day survival was 60%. Mean TAPSE was 6.4 ± 3.1 mm, mean fractional area change was 12.1 ± 4.2%, and mean right ventricular end diastolic area was 19.8 ± 2.7 cm². Mean implantation time was 32.8 ± 8.3 min. Mean interval after first cardiac intervention was 4.6 ± 5.8 days. Mean t-RVAD time was 10.0 ± 7.4 days with a significant reduction in central venous pressure 19.3 ± 2.7 vs. 8.2 ± 2.6 mmHg, P
- Published
- 2020
49. Physical descriptions of molecular and mesoscale organizations of proteins within condensates and at interfaces
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Mina Farag and Rohit V. Pappu
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Biophysics - Published
- 2022
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50. Modulating <scp>ATP</scp> binding cassette transporters in papillary renal cell carcinoma type 2 enhances its response to targeted molecular therapy
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Fabio Rontondo, Rola Saleeb, Jenni Bartlett, Michelle R Downes, Zsuzsanna Lichner, George M. Yousef, Fadi Brimo, Mina Farag, Antonio Finelli, and Georg A. Bjarnason
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0301 basic medicine ,Cancer Research ,papillary renal cell carcinoma subtypes ,renal cell carcinoma cell lines ,medicine.medical_treatment ,Biological Transport, Active ,Mice, SCID ,urologic and male genital diseases ,lcsh:RC254-282 ,Immunophenotyping ,Papillary renal cell carcinoma type 2 ,Targeted therapy ,03 medical and health sciences ,0302 clinical medicine ,In vivo ,Cell Line, Tumor ,Targeted Molecular Therapy ,Sunitinib ,Genetics ,medicine ,Animals ,Humans ,papillary renal cell carcinoma type 2 ,Molecular Targeted Therapy ,Carcinoma, Renal Cell ,Research Articles ,Cell Nucleus ,Everolimus ,Papillary renal cell carcinomas ,business.industry ,Reproducibility of Results ,General Medicine ,targeted therapy ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Kidney Neoplasms ,Multidrug Resistance-Associated Protein 2 ,Disease Models, Animal ,030104 developmental biology ,ABC transporters ,Oncology ,030220 oncology & carcinogenesis ,Cancer cell ,Cancer research ,Molecular Medicine ,ATP-Binding Cassette Transporters ,business ,Research Article ,medicine.drug - Abstract
Papillary renal cell carcinoma (PRCC) is the most common nonclear cell RCCs and is known to comprise two histological subtypes. PRCC2 is more aggressive and is molecularly distinct from the other subtypes. Despite this, PRCCs are treated together as one entity, and they show poor response to the current therapies that do not target pathways implicated in their pathogenesis. We have previously detected ABCC2 (an ABC transporter), VEGF, and mTOR pathways to be enriched in PRCC2. In this study, we assess the therapeutic potential of targeting these pathways in PRCC2. Twenty RCC cell lines from the Cancer Cell Encyclopedia were compared to the Cancer Genome Atlas PRCC cohort (290), to identify representative PRCC2 cell lines. Cell lines were further validated in xenograft models. Selected cell lines were treated in vitro and in vivo (mice models) under five different conditions, untreated, anti‐VEGF (sunitinib), ABCC2 blocker (MK571), mTOR inhibitor (everolimus) and sunitinib + MK571. Sunitinib +ABCC2 blocker group showed a significant response to therapy compared to the other treatment groups both in vitro (P ≤ 0.0001) and in vivo (P = 0.0132). ABCC2 blockage resulted in higher sunitinib uptake, both in vitro (P = 0.0016) and in vivo (P = 0.0031). Everolimus group demonstrated the second best response in vivo. The double‐treatment group showed the highest apoptotic rate and lowest proliferation rate. There is an urgent need for individualized therapies of RCC subtypes that take into account their specific biology. Our results demonstrate that combined targeted therapy with sunitinib and ABCC2 blocker in PRCC2 has therapeutic potential. The results are likewise potentially significant for other ABCC2 high tumors. However, the results are preliminary and clinical trials are needed to confirm these effects in PRCC2 patients.
- Published
- 2018
- Full Text
- View/download PDF
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