12,971 results on '"Min, Wu"'
Search Results
2. Fgf9 promotes incisor dental epithelial stem cell survival and enamel formation
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Lingyun Tang, Mingmei Chen, Min Wu, Hui Liang, Haoyang Ge, Yan Ma, Yan Shen, Shunyuan Lu, Chunling Shen, Hongxin Zhang, Chenping Zhang, and Zhugang Wang
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Fibroblast growth factors ,Dental epithelial stem cells ,Cell survival ,Enamel ,Epithelial-mesenchymal interaction ,Medicine (General) ,R5-920 ,Biochemistry ,QD415-436 - Abstract
Abstract Background Understanding the role of cytokines in tooth development is critical for advancing dental tissue engineering. Fibroblast growth factor 9 (FGF9) is the only FGF consistently expressed throughout dental epithelial tissue, from the initiation of tooth bud formation to tooth maturation. However, mice lacking Fgf9 (Fgf9 −/− ) surprisingly show no obvious abnormalities in tooth development, suggesting potential compensation by other FGFs. Here we report findings from an Fgf9 S99N mutation mouse model, a loss-of-function mutation with a dominant negative effect. Our study reveals that Fgf9 is crucial for dental epithelial stem cell (DESC) survival and enamel formation. Methods To dissect the role of Fgf9 in tooth development, we performed the micro-CT, histomorphological analysis and gene expression assay in mice and embryos with S99N mutation. In addition, we assessed the effect of FGF9 on the DESC survival and dental epithelial differentiation by DESC sphere formation assay and tooth explant culture. Cell/tissue culture methods, gene expression analysis, specific inhibitors, and antibody blockage analysis were employed to explore how Fgf9 regulates enamel differentiation and DESC survival through both direct and indirect mechanisms. Results The Fgf9 S99N mutation in mice led to reduced ameloblasts, impaired enamel formation, and increased apoptosis in the cervical loop (CL). DESC sphere culture experiments revealed that FGF9 facilitated DESC survival via activating ERK/CREB signaling, without affecting cell proliferation. Furthermore, in vitro tissue culture experiments demonstrated that FGF9 promoted enamel formation in a manner dependent on the presence of mesenchyme. Interestingly, FGF9 stimulation inhibited enamel formation in isolated enamel epithelia and DESC spheres. Further investigation revealed that FGF9 supports DESC survival and promotes amelogenesis by stimulating the secretion of FGF3 and FGF10 in dental mesenchymal cells via the MAPK/ERK signaling pathway. Conclusions Our study demonstrates that Fgf9 is essential for DESC survival and enamel formation. Fgf9 performs as a dual-directional regulator of the dental enamel epithelium, not only inhibiting DESC differentiation into ameloblasts to preserve the stemness of DESC, but also promoting ameloblast differentiation through epithelial-mesenchymal interactions.
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- 2024
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3. Three-way interaction effect of hindrance research stressors, inclusive mentoring style, and academic resilience on research creativity among doctoral students from China
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Chunlei Liu, Min Wu, and Xiaoqing Gao
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Medicine ,Science - Abstract
Abstract With the increasingly intense academic competition, the stressors faced by doctoral students are gradually escalating. Based on the Job Demands-Resources Model, this study proposed a moderated moderation to explore how hindrance research stressors affect doctoral students’ research creativity. Explicitly, the present study investigates whether the relationship between hindrance research stressors and research creativity is contingent on inclusive mentoring style and academic resilience. By analyzing the survey data from 538 valid questionnaire responses of doctoral students in China, this study has revealed that hindrance research stressors negatively relate to doctoral students’ research creativity, and inclusive mentoring style from academic supervisors can mitigate the negative impact of hindrance research stressors on the research creativity of doctoral students. Furthermore, academic resilience strengthens the moderating effect of inclusive mentoring style. Specifically, it buffers the negative impact of hindrance research stressors on research creativity among doctoral students who receive high inclusive mentoring, but not among those with low levels of inclusive mentoring. These findings emphasize that effective strategies to enhance the research creativity of doctoral students who encounter hindrance stressors may require the joint consideration of contextual and personal resources.
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- 2024
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4. Gaussian quantum steering for continuous variables sharing in an expanding universe
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Hengyu Wu, Xiaolong Gong, Tonghua Liu, and Shu-Min Wu
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Astrophysics ,QB460-466 ,Nuclear and particle physics. Atomic energy. Radioactivity ,QC770-798 - Abstract
Abstract Realistic quantum systems are affected by the expanding universe in their preparation and quantum information processing. In this paper, we study the relationship between the Gaussian quantum steering distribution and the parameters of the expanding universe. The expansion process of the universe can be described as a channel acting on a two-mode squeezed Gaussian state, with the evolution of quantum steering from the asymptotic past to the asymptotic future resulting in new distributions parameterized by cosmic parameters. We find that Gaussian quantum steering is more sensitive to the volume change of the expanding universe than the expansion rate, and the Gaussian quantum steering generated by particles with suitable mass and small momentum is more affected by the expanding universe.
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- 2024
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5. Potential risk assessment of organic pollutants in coal mining water
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Yupeng HE, Yixiang BAO, Min WU, Jiamin HU, Jie LI, Xiaoqing LIU, Jinkui ZHONG, and Jingfeng LI
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coal mining water ,organic pollutants ,analytic hierarchy process ,potential risks ,Mining engineering. Metallurgy ,TN1-997 - Abstract
In order to investigate the potential risk of organic pollutants in coal mining water, the persistence, bioaccumulation and toxicity of known organic pollutants in coal mining water were systematically simulated and assessed by using EPI Suite and toxicolgical data, and the analytic hierarchy process (AHP) was used to establish an evaluation system for priority organic pollutants in coal mining water based on two primary indexes and seven secondary indicators of toxic and environmental effects. The results showed that: ① there were 13 persistent persistent substances, 8 bioaccumulative substances and 1 toxic substances among 54 organic pollutants, halgenated hydrocarbons have the strongest persistence, polycyclic aromatic hydrocarbons have the strongest bioaccumulation, and the general trend of reaction rate with hydroxyl radicals (OH•) is as follows: ether>esters>halgenated hydrocarbons; aliphatic>aromatic. (Short-chain halgenated) aliphatic compounds have no bioaccumulative substances, and the bioaccumulation of polycyclic aromatic hydrocarbons is generally high, moreover, there were 4 or more benzene rings in the molecular structure of the bioaccumulative ones, and the increase in the number of benzene rings would lead to the enhancement of the bioaccumulation of polycyclic aromatic hydrocarbons. Triphenyl phosphate is a significant toxic substance, which needs to be focused on during coal mining water treatment. ② The 20 organic pollutants with the higher comprehensive score were screened out as priority pollutants in coal mining water, among which dichloromethane, 1,2-dichloroethane, toluene, dibutyl phthalate, di(2-ethylhexyl) phthalate, naphthalene, benzo [a] pyrene, dibenzo [a, h] anthracene, benzo [b] fluoranthracene, benzo [k] fluoranthracene and benzo [a] anthracene have the characteristics of emerging contaminants, however, the level of organic pollutants detected in coal mining water is insufficient to pose risks to human health and ecolgical environment presently, but with the implementation of national policies and the increase in demand for high-quality treatment and utilization of coal mining water. The control of organic pollutants in coal mining water will become an realistic demand for the protection and utilization of regional water resources, and the potential risk assessment system of priority organic pollutants constructed in this study can be used to screen out priority pollutants in coal mining water, and provide a theoretical basis for the future control of organic pollutants.
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- 2024
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6. Geniposide for treating atherosclerotic cardiovascular disease: a systematic review on its biological characteristics, pharmacology, pharmacokinetics, and toxicology
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Dexiu Li, Xiaoya Li, Xiaonan Zhang, Jiye Chen, Zeping Wang, Zongliang Yu, Min Wu, and Longtao Liu
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Gardenia jasminoides Ellis ,Geniposide ,Atherosclerotic cardiovascular disease ,Pharmacology ,Pharmacokinetics ,Toxicology ,Other systems of medicine ,RZ201-999 - Abstract
Abstract In recent years, the prevalence and fatality rates of atherosclerotic cardiovascular disease have not only shown a consistent rise that cannot be ignored, but have also become a pressing social health problem that requires urgent attention. While interventional surgery and drug therapy offer significant therapeutic results, they often come with common side effects. Geniposide, an active component extracted from the Chinese medicine Gardenia jasminoides Ellis, shows promise in the management of cardiac conditions. This review comprehensively outlines the underlying pharmacological mechanisms by which geniposide exerts its effects on atherosclerosis. Geniposide exhibits a range of beneficial effects including alleviating inflammation, inhibiting the development of macrophage foam cells, improving lipid metabolism, and preventing platelet aggregation and thrombosis. It also demonstrates mitochondrial preservation, anti-apoptotic effects, and modulation of autophagy. Moreover, geniposide shows potential in improving oxidative stress and endoplasmic reticulum stress by maintaining the body’s antioxidant and oxidative balance. Additionally, this review comprehensively details the biological properties of geniposide, including methods of extraction and purification, as well as its pharmacokinetics and toxicological characteristics. It further discusses the clinical applications of related biopharmaceuticals, emphasizing the potential of geniposide in the prevention and treatment of atherosclerotic cardiovascular diseases. Furthermore, it highlights the limitations of current research, aiming to provide insights for future studies. Graphical Abstract
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- 2024
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7. Multi-omics and pharmacological characterization of patient-derived glioma cell lines
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Min Wu, Tingting Wang, Nan Ji, Ting Lu, Ran Yuan, Lingxiang Wu, Junxia Zhang, Mengyuan Li, Penghui Cao, Jiarui Zhao, Guanzhang Li, Jianyu Li, Yu Li, Yujie Tang, Zhengliang Gao, Xiuxing Wang, Wen Cheng, Ming Ge, Gang Cui, Rui Li, Anhua Wu, Yongping You, Wei Zhang, Qianghu Wang, and Jian Chen
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Science - Abstract
Abstract Glioblastoma (GBM) is the most common brain tumor and remains incurable. Primary GBM cultures are widely used tools for drug screening, but there is a lack of genomic and pharmacological characterization for these primary GBM cultures. Here, we collect 50 patient-derived glioma cell (PDGC) lines and characterize them by whole genome sequencing, RNA sequencing, and drug response screening. We identify three molecular subtypes among PDGCs: mesenchymal (MES), proneural (PN), and oxidative phosphorylation (OXPHOS). Drug response profiling reveals that PN subtype PDGCs are sensitive to tyrosine kinase inhibitors, whereas OXPHOS subtype PDGCs are sensitive to histone deacetylase inhibitors, oxidative phosphorylation inhibitors, and HMG-CoA reductase inhibitors. PN and OXPHOS subtype PDGCs stably form tumors in vivo upon intracranial transplantation into immunodeficient mice, whereas most MES subtype PDGCs fail to form tumors in vivo. In addition, PDGCs cultured by serum-free medium, especially long-passage PDGCs, carry MYC/MYCN amplification, which is rare in GBM patients. Our study provides a valuable resource for understanding primary glioma cell cultures and clinical translation and highlights the problems of serum-free PDGC culture systems that cannot be ignored.
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- 2024
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8. Safety analysis of laboratory parameters in paediatric patients with spinal muscular atrophy treated with nusinersen
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Xiaomei Zhu, Hui Li, Chaoping Hu, Min Wu, Shuizhen Zhou, Yi Wang, and Wenhui Li
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Nusinersen ,Side effects ,Laboratory parameters ,Spinal muscular atrophy ,Safety ,Pediatrics ,RJ1-570 - Abstract
Abstract Background Spinal muscular atrophy (SMA) is a progressive neurodegenerative disorder that can be treated with intrathecal nusinersen, an antisense oligonucleotide. In addition to efficacy, safety is a determining factor in the success of any therapy. Here, we aim to assess the safety of nusinersen therapy in paediatric patients with SMA. Methods Laboratory data of paediatric patients with SMA who received nusinersen between October 2019 and May 2022 were retrospectively analysed. Results During the observation period, 46 infants and children aged 2.9 months to 13.6 years received a total of 213 nusinersen doses without safety concerns. Inflammatory markers were stable throughout the study. International normalized ratio was increased by 0.09 per injection. Urea levels were increased by 0.108 mmol/L, and cystatin C decreased by 0.029 mg/L per injection. There were no significant changes in platelet count, activated partial thrombin time, creatinine levels or liver enzyme levels during treatment. The cerebrospinal fluid (CSF) leukocyte count remained stable, and total protein increased by 24.038 mg/L per injection. Conclusion Our data showed that nusinersen therapy is generally safe in children with SMA. Laboratory monitoring did not identify any persistent or significantly abnormal findings. CSF protein should be monitored to gain more insights.
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- 2024
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9. Does gravitational wave assist vacuum steering and Bell nonlocality?
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Shu-Min Wu, Rui-Di Wang, Xiao-Li Huang, and Zejun Wang
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Classical Theories of Gravity ,Quantum Dissipative Systems ,Nuclear and particle physics. Atomic energy. Radioactivity ,QC770-798 - Abstract
Abstract We study quantum steering and Bell nonlocality harvested by the local interaction of two Unruh-DeWitt detectors with the vacuum massless scalar field, both in the presence of gravitational waves and in Minkowski spacetime. It is shown that quantum steerability under the influence of gravitational waves can be greater than or less than quantum steerability in Minkowski spacetime, which means that the gravitational waves can amplify or degrade the harvested steering. In particular, a resonance effect occurs when the energy gap of the detector is tuned to the frequency of the gravitational wave. We also find that the harvesting-achievable separation range of vacuum steering can be expanded or reduced by the presence of gravitational waves, which depends on the energy gap, the gravitational wave frequency, and the duration of the gravitational wave action. It is interesting to note that two detector systems that satisfy the Bell inequality in most parameter spaces, regardless of the existence of gravitational waves, indicating that steering harvesting cannot be considered to be nonlocal.
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- 2024
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10. A novel splicing mutation DNAH5 c.13,338 + 5G > C is involved in the pathogenesis of primary ciliary dyskinesia in a family with primary familial brain calcification
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Xiu-juan Yao, Qian Chen, Hong-ping Yu, Dan-dan Ruan, Shi-jie Li, Min Wu, Li-sheng Liao, Xin-fu Lin, Zhu-ting Fang, Jie-wei Luo, and Bao-song Xie
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Primary ciliary dyskinesia ,Primary familial brain calcification ,DNAH5 ,MYORG ,Splicing mutation ,Diseases of the respiratory system ,RC705-779 - Abstract
Abstract Background Primary ciliary dyskinesia (PCD) is an autosomal recessive hereditary disease characterized by recurrent respiratory infections. In clinical manifestations, DNAH5 (NM_001361.3) is one of the recessive pathogenic genes. Primary familial brain calcification (PFBC) is a neurodegenerative disease characterized by bilateral calcification in the basal ganglia and other brain regions. PFBC can be inherited in an autosomal dominant or recessive manner. A family with PCD caused by a DNAH5 compound heterozygous variant and PFBC caused by a MYORG homozygous variant was analyzed. Methods In this study, we recruited three generations of Han families with primary ciliary dyskinesia combined with primary familial brain calcification. Their clinical phenotype data were collected, next-generation sequencing was performed to screen suspected pathogenic mutations in the proband and segregation analysis of families was carried out by Sanger sequencing. The mutant and wild-type plasmids were constructed and transfected into HEK293T cells instantaneously, and splicing patterns were detected by Minigene splicing assay. The structure and function of mutations were analyzed by bioinformatics analysis. Results The clinical phenotypes of the proband (II10) and his sister (II8) were bronchiectasis, recurrent pulmonary infection, multiple symmetric calcifications of bilateral globus pallidus and cerebellar dentate nucleus, paranasal sinusitis in the whole group, and electron microscopy of bronchial mucosa showed that the ciliary axoneme was defective. There was also total visceral inversion in II10 but not in II8. A novel splice variant C.13,338 + 5G > C and a frameshift variant C.4314delT (p. Asn1438lysfs *10) were found in the DNAH5 gene in proband (II10) and II8. c.347_348dupCTGGCCTTCCGC homozygous insertion variation was found in the MYORG of the proband. The two pathogenic genes were co-segregated in the family. Minigene showed that DNAH5 c.13,338 + 5G > C has two abnormal splicing modes: One is that part of the intron bases where the mutation site located is translated, resulting in early translation termination of DNAH5; The other is the mutation resulting in the deletion of exon76. Conclusions The newly identified DNAH5 splicing mutation c.13,338 + 5G > C is involved in the pathogenesis of PCD in the family, and forms a compound heterozygote with the pathogenic variant DNAH5 c.4314delT lead to the pathogenesis of PCD.
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- 2024
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11. Polystyrene nanoplastics of different particle sizes regulate the polarization of pro-inflammatory macrophages
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Wanlan Jiang, Yilin Liu, Yuqi Wu, Lu Zhang, Biqing Zhang, Shiliang Zhou, Peng Zhang, Ting Xu, Min Wu, and Songwei Lv
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Nanoplastics ,Macrophage ,M1&M2 polarization ,Polystyrene ,iNOS ,Medicine ,Science - Abstract
Abstract Microplastics (MPs) are defined as plastic particles smaller than 5 mm in size, and nanoplastics (NPs) are those MPs with a particle size of less than 1000 nm or 100 nm. The prevalence of MPs in the environment and human tissues has raised concerns about their potential negative effects on human health. Macrophages are the major defence against foreign substances in the intestine, and can be polarized into two types: the M1 phenotype and the M2 phenotype. However, the effect of NPs on the polarization of macrophages remains unclear. Herein, we selected polystyrene, one of the most plastics in the environment and controlled the particle sizes at 50 nm and 500 nm respectively to study the effects on the polarization of macrophages. We used mouse RAW264.7 cell line models in this macrophage-associated study. Experiments on cell absorption showed that macrophages could quickly ingest polystyrene nanoplastics of both diameters with time-dependent uptake. Compared to the untreated group and 10 μg/mL treatment group, macrophages exposed to 50 μg/mL groups (50 nm and 500 nm) had considerably higher levels of CD86, iNOS, and TNF-α, but decreased levels of aCD206, IL-10, and Arg-1. According to these findings, macrophage M1 and M2 polarization can both be induced and inhibited by 50 μg/mL 50 nm and 500 nm polystyrene nanoplastics. This work provided the first evidence of a possible MPs mode of action with appropriate concentration and size through the production of polarized M1, providing dietary and environmental recommendations for people, particularly those with autoimmune and autoinflammatory illnesses.
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- 2024
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12. Antibody targeting of anaerobic bacteria warms cold tumors and improves the abscopal effect of radiotherapy
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WeiZhou Wang, YunXue Zheng, ZhouXue Wu, Min Wu, Yue Chen, Yan Zhang, ShaoZhi Fu, and JingBo Wu
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Bifidobacterium ,Monoclonal antibody ,Tumor microenvironment ,Hypo-fractionated radiotherapy ,Immune checkpoint inhibitors ,Abscopal effect ,Medicine - Abstract
Abstract Background The combination of immune checkpoint inhibitors with radiotherapy can enhance the immunomodulation by RT and reduce the growth of distant unirradiated tumors (abscopal effect); however, the results are still not very satisfactory. Therefore, new treatment options are needed to enhance this effect. Our previous study showed that the combination of Bifidobacterium (Bi) and its specific monoclonal antibody (mAb) could target and alleviate hypoxia at the tumor site and act as a radiosensitizer. In this study, we explored the anti-tumor efficacy of quadruple therapy (Bi + mAb and RT + αPD-1). The current study also aimed to probe into the complex immune mechanisms underlying this phenomenon. Methods Constructed 4T1 breast and CT26 colon cancer tumor models. A comprehensive picture of the impact of constructed quadruple therapy was provided by tumor volume measurements, survival analysis, PET/CT imaging, immune cell infiltration analysis and cytokine expression levels. Results The abscopal effect was further amplified in the “cold” tumor model and prolonged survival in tumor-bearing mice. Bi can colonized in primary and secondary tumors and direct the mAb to reach the tumor site, activate complement, enhance the ADCC effect and initiate the innate immune response. Then combined with αPD-1 and radiotherapy to stimulate adaptive immune response and synergize with cytokines to expand the immune efficacy and generate effective anti-tumor immune response. Conclusions Bi was used as an artificially implanted anaerobic target to cause a transient “infection” at the tumor, causing the tumor to become locally inflamed and “hot”, and at the same time, mAb was used to target Bi to enhance the local immune effect of the tumor, and then combined with radiotherapy and αPD-1 to amplify the abscopal effect in multiple dimensions. Therefore, the present study provided a new idea for the multipotent immune-activating function of antibody-targeted anaerobic bacteria for the RT treatment of extensively metastasized cancer patients.
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- 2024
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13. Target organ damage in untreated hypertensive patients with primary aldosteronism
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Shi‐Min Li, Jia‐Yi Huang, Ching‐Yan Zhu, Ming‐Yen Ng, Qing‐Shan Lin, Min Wu, Ming‐Ya Liu, Run Wang, Gao‐Zhen Cao, Cong Chen, Mei‐Zhen Wu, Qing‐Wen Ren, Hung‐Fat Tse, and Kai‐Hang Yiu
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primary aldosteronism ,target organ damage ,untreated hypertension ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Abstract An increased risk of target organ damage (TOD) has been reported in patients with primary aldosteronism (PA). However, there is relatively little related research on the correlation between the degree of TOD and those with and without PA in newly diagnosed hypertensive patients. The aim of this study was to assess the association between PA and TOD among patients with newly diagnosed hypertension. Newly diagnosed hypertensive patients were consecutively recruited from January 2015 to June 2020 at the University of Hong Kong‐Shenzhen Hospital. Patients were stratified into those with and without PA. Data for left ventricular mass index (LVMI), carotid intima‐media thickness (CIMT) and plaque, and microalbuminuria were systematically collected. A total of 1044 patients with newly diagnosed hypertension were recruited, 57 (5.5%) of whom were diagnosed with PA. Patients with PA had lower blood pressure, serum lipids, body mass index, and plasma renin activity and a higher incidence of hypokalemia than those without PA. In contrast, the prevalence of left ventricular hypertrophy, increased CIMT, and microalbuminuria was higher in patients with PA than in those without PA. Multivariable regression analysis demonstrated that PA was independently associated with increased LVMI, CIMT and microalbuminuria. Among patients with newly diagnosed hypertension, those with PA had more severe TOD, including a higher LVMI, CIMT and microalbuminuria, than those without PA. These findings emphasize the need for screening TOD in newly diagnosed hypertension due to underlying PA.
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- 2024
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14. An emerging artificial nanomachine: a nanoengine with a reversible clutch
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Ziqi Fang, Jianxin Jiang, and Min Wu
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Medicine ,Biology (General) ,QH301-705.5 - Published
- 2024
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15. The association and underlying mechanism of the digit ratio (2D:4D) in hypospadias
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Yu Ding, Zu-Quan Chen, Wen-Feng Pan, Hao-Jie Chen, Min Wu, Yi-Qing Lyu, Hua Xie, Yi-Chen Huang, Zhong-Zhong Chen, and Fang Chen
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androgen receptor ,digit ratio (2d:4d) ,endochondral ossification ,hypospadias ,testosterone level ,Diseases of the genitourinary system. Urology ,RC870-923 - Abstract
The second-to-fourth digit (2D:4D) ratio is thought to be associated with prenatal androgen exposure. However, the relationship between the 2D:4D ratio and hypospadias is poorly understood, and its molecular mechanism is not clear. In this study, by analyzing the hand digit length of 142 boys with hypospadias (23 distal, 68 middle, and 51 proximal) and 196 controls enrolled in Shanghai Children’s Hospital (Shanghai, China) from December 2020 to December 2021, we found that the 2D:4D ratio was significantly increased in boys with hypospadias (P < 0.001) and it was positively correlated with the severity of the hypospadias. This was further verified by the comparison of control mice and prenatal low testosterone mice model obtained by knocking out the risk gene (dynein axonemal heavy chain 8 [DNAH8]) associated with hypospadias. Furthermore, the discrepancy was mainly caused by a shift in 4D. Proteomic characterization of a mouse model validated that low testosterone levels during pregnancy can impair the growth and development of 4D. Comprehensive mechanistic explorations revealed that during the androgen-sensitive window, the downregulation of the androgen receptor (AR) caused by low testosterone levels, as well as the suppressed expression of chondrocyte proliferation-related genes such as Wnt family member 5a (Wnt5a), Wnt5b, Smad family member 2 (Smad2), and Smad3; mitochondrial function-related genes in cartilage such as AMP-activated protein kinase (AMPK) and nuclear respiratory factor 1 (Nrf-1); and vascular development-related genes such as myosin light chain (MLC), notch receptor 3 (Notch3), and sphingosine kinase 1 (Sphk1), are responsible for the limitation of 4D growth, which results in a higher 2D:4D ratio in boys with hypospadias via decreased endochondral ossification. This study indicates that the ratio of 2D:4D is a risk marker of hypospadias and provides a potential molecular mechanism.
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- 2024
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16. Marabou 2.0: A Versatile Formal Analyzer of Neural Networks.
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Haoze Wu 0001, Omri Isac, Aleksandar Zeljic, Teruhiro Tagomori, Matthew L. Daggitt, Wen Kokke, Idan Refaeli, Guy Amir, Kyle Julian, Shahaf Bassan, Pei Huang 0002, Ori Lahav 0002, Min Wu, Min Zhang 0002, Ekaterina Komendantskaya, Guy Katz, and Clark W. Barrett
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- 2024
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17. A Quantum-Inspired Multi-objective Portfolio Strategy Based on Trend Ratio Model in Global Financial Network.
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Yao-Hsin Chou, Yun-Ting Lai, Yong Feng Tong, Alvin Young, Ming-Ho Chang, Kun-Min Wu, Yu-Chi Jiang, and Shu-Yu Kuo
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- 2024
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18. A Resource-Constrained Spatio-Temporal Super Resolution Model.
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Da Hyeon Jung, Min-Wu Jeong, Xuan Truong Nguyen, and Chae-Eun Rhee
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- 2024
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19. Robust Control of Feeding Speed for Coal Mine Tunnel Drilling Machines.
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Xiao Liu, Luefeng Chen, Min Wu 0002, Weihua Cao, Chengda Lu, and Witold Pedrycz
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- 2024
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20. Graph-Aware Contrasting for Multivariate Time-Series Classification.
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Yucheng Wang, Yuecong Xu, Jianfei Yang, Min Wu 0008, Xiaoli Li 0001, Lihua Xie, and Zhenghua Chen
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- 2024
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21. Fully-Connected Spatial-Temporal Graph for Multivariate Time-Series Data.
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Yucheng Wang, Yuecong Xu, Jianfei Yang, Min Wu 0008, Xiaoli Li 0001, Lihua Xie, and Zhenghua Chen
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- 2024
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22. Towards Efficient Verification of Quantized Neural Networks.
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Pei Huang 0002, Haoze Wu 0001, Yuting Yang 0002, Ieva Daukantas, Min Wu, Yedi Zhang, and Clark W. Barrett
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- 2024
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23. Energy Efficiency Optimization in RIS-assisted ISATRNs with RSMA: A Federated Deep Reinforcement Learning Approach.
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Min Wu, Kefeng Guo, Zhi Lin, Sahil Garg, Kuljeet Kaur, and Georges Kaddoum
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- 2024
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24. Beneficial effects of vemurafenib on craniopharyngioma carrying BRAF-V600E mutation
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WANG Xi, YE Ting, NIE Min, WU Xueyan, MAO Jiangfeng
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papillary craniopharyngioma ,braf-v600e mutation ,braf inhibitors ,mek inhibitors ,Medicine - Abstract
Objective To evaluate the efficacy and adverse reactions of BRAF inhibitor vermorafenib on the treatment of refractory craniopharyngioma carrying BRAF-V600E mutation. Methods Clinical data of two patients with refractory craniopharyngiomas (CP) were recorded and reviewed. The patients were followed up for 3-5 years. Literature on CPs receiving BRAF or BRAF/MEK therapy was reviewed. Results 1)Papillary CP progressed after multiple operations and radiotherapy in two patients. Further treatments were very difficult. 2)The presence of BRAF-V600E mutation in the tumor was confirmed, and vermorafenib was administered for 6.5-7.5 months. Tumor volumes remarkably shrank by 95%-99%. No tumor relapse was observed during the follow-up of 3-5 years after discontinuation of vemurafenib. 3)The main adverse reaction was rash, which was dose dependent. 4)Literature review showed the volume shrank by 50%-100% in 33/34 tumors during BRAF or BRAF/MEK inhibitor therapy. Conclusions BRAF inhibitor vemurafenib is effective in treating refractory craniopharyngioma carrying BRAF-V600E mutation with endurable side effects, which may bring some changes to the management of CP in future.
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- 2024
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25. Water Quality Characteristics and Water–Rock Interaction Mechanisms of Coal Mine Underground Reservoirs
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Haitao Zhang, Binbin Jiang, Haiqin Zhang, Peng Li, Min Wu, Jingwei Hao, and Yutian Hu
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Chemistry ,QD1-999 - Published
- 2024
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26. Two new species of Paraphlomis (Lamiales, Lamiaceae) from limestone karsts in Guangdong Province, China
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Wan-Yi Zhao, Qin-Dai Xiong, Rang-Min Wu, You-Hong Zeng, Zhi-Bin Xie, Ya-Ping Chen, and Qiang Fan
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Botany ,QK1-989 - Abstract
Paraphlomis qingyuanensis and P. baiwanensis (Lamiaceae), two new species from the limestone area in Guangdong Province, China, are described. Morphologically, both species belong to P. ser. Subcoriaceae C.Y. Wu & H.W. Li. A close relationship between the two new and P. subcoriacea was revealed by molecular phylogenetic analyses based on ETS and ITS. Further morphological and population genetic evidence indicated that they are distinct species in Paraphlomis. According to the IUCN Red List Categories and Criteria, P. qingyuanensis and P. baiwanensis were assessed as Endangered (EN) and Deficient (DD), respectively.
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- 2024
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27. Alteration of the immune microenvironment in the axillary metastatic lymph nodes of luminal A breast cancer patients
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Min Wu, Shuo Wang, Keyu Yuan, Bingjun Xiong, Yanping Li, and Shuzhen Lyu
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Breast cancer ,Luminal A ,Immune function ,Alteration ,Positive rate ,Surgery ,RD1-811 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background The alteration of the immune microenvironment in the axillary metastatic lymph nodes of luminal A breast cancer patients is still unclear. Methods Postsurgical tissues from the enrolled luminal A BCs were divided into five categories: primary BC lesion at stage N0 (PL1), primary BC lesion at stage N1 (PL2), negative axillary lymph node at stage N0 BC (LN1), negative axillary lymph node at stage N1 BC (LN2), and positive axillary lymph node at stage N1 BC (LN3). The frequencies of positive immune markers (CD4, CD8, PD1, PD-L1, T-cell immunoglobulin and mucin domain 3 (TIM3), and forkhead box protein 3 (Foxp3)) in the above tissues were quantified by AKOYA Opal Polaris 7 Color Manual IHC Detection Kit. Results A total of 50 female patients with luminal A BC were enrolled in this study. Among these patients, 23 had stage N1 disease, and 27 had stage N0 disease. Compared with that in the PL2 subgroup, the frequency of PD-1-positive cells was significantly greater in the PL1 subgroup, whether at the stromal or intratumoral level (P value
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- 2024
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28. Impact of pretransplant T2DM on left ventricular deformation and myocardial perfusion in heart transplanted recipients: a 3.0 T cardiac magnetic resonance study
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Liqi Cao, Chang Liu, Chulan Ou, Quanmei Ma, Huanwen Xu, Xiaodan Li, Yingying Bao, Rui Chen, Yuelong Yang, Min Wu, and Hui Liu
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Type 2 diabetes mellitus ,Heart transplant ,Cardiovascular magnetic resonance ,Left ventricular strains ,First-pass perfusion ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Abstract Background Pretransplant type 2 diabetes mellitus (T2DM) is associated with increased cardiovascular and all-cause mortality after heart transplant (HT), but the underlying causes of this association remain unclear. The purpose of this research was to examine the impact of T2DM on left ventricular (LV) myocardial deformation and myocardial perfusion following heart transplantation using cardiovascular magnetic resonance imaging. Methods We investigated thirty-one HT recipients with pretransplant T2DM [HT(DM+)], thirty-four HT recipients without pretransplant T2DM [HT(DM−)] and thirty-six controls. LV myocardial strains, including the global longitudinal, radial, and circumferential strain (GLS, GRS and GCS, respectively), were calculated and compared among groups, as were resting myocardial perfusion indices, which included time to peak myocardial signal intensity (TTM), maximum signal intensity (MaxSI), and Upslope. The relationships between LV strain parameters or perfusion indices and biochemical indicators were determined through Spearman’s analysis. The impact of T2DM on LV strains in HT recipients was assessed using multivariable linear regression analyses with backward stepwise selection. Results In the HT(DM+) group, the LV GLS, GRS, and GCS exhibited significantly lower magnitudes than those in both the HT(DM−) and control groups. TTM was higher in the HT(DM+) group than in both the HT(DM−) and control groups, while no significant differences were observed among the groups regarding Upslope and MaxSI. There was a negative correlation between glycated hemoglobin and the magnitude of strains (longitudinal, r = − 0.399; radial, r = − 0.362; circumferential, r = − 0.389) (all P
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- 2024
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29. Use of phase plate cryo-EM reveals conformation diversity of therapeutic IgG with 50 kDa Fab fragment resolved below 6 Å
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Hsin-Hung Lin, Chun-Hsiung Wang, Shih-Hsin Huang, Sung-Yao Lin, Takayuki Kato, Keiichi Namba, Naoki Hosogi, Chihong Song, Kazuyoshi Murata, Ching-Hsuan Yen, Tsui-Ling Hsu, Chi-Huey Wong, Yi-Min Wu, I.-Ping Tu, and Wei-Hau Chang
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Medicine ,Science - Abstract
Abstract While cryogenic electron microscopy (cryo-EM) is fruitfully used for harvesting high-resolution structures of sizable macromolecules, its application to small or flexible proteins composed of small domains like immunoglobulin (IgG) remain challenging. Here, we applied single particle cryo-EM to Rituximab, a therapeutic IgG mediating anti-tumor toxicity, to explore its solution conformations. We found Rituximab molecules exhibited aggregates in cryo-EM specimens contrary to its solution behavior, and utilized a non-ionic detergent to successfully disperse them as isolated particles amenable to single particle analysis. As the detergent adversely reduced the protein-to-solvent contrast, we employed phase plate contrast to mitigate the impaired protein visibility. Assisted by phase plate imaging, we obtained a canonical three-arm IgG structure with other structures displaying variable arm densities co-existing in solution, affirming high flexibility of arm-connecting linkers. Furthermore, we showed phase plate imaging enables reliable structure determination of Fab to sub-nanometer resolution from ab initio, yielding a characteristic two-lobe structure that could be unambiguously docked with crystal structure. Our findings revealed conformation diversity of IgG and demonstrated phase plate was viable for cryo-EM analysis of small proteins without symmetry. This work helps extend cryo-EM boundaries, providing a valuable imaging and structural analysis framework for macromolecules with similar challenging features.
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- 2024
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30. Thymoquinone as an electron transfer mediator to convert Type II photosensitizers to Type I photosensitizers
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Jiahao Zhuang, Guobin Qi, Yecheng Feng, Min Wu, Hang Zhang, Dandan Wang, Xianhe Zhang, Kok Chan Chong, Bowen Li, Shitai Liu, Jianwu Tian, Yi Shan, Duo Mao, and Bin Liu
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Science - Abstract
Abstract The development of Type I photosensitizers (PSs) is of great importance due to the inherent hypoxic intolerance of photodynamic therapy (PDT) in the hypoxic microenvironment. Compared to Type II PSs, Type I PSs are less reported due to the absence of a general molecular design strategy. Herein, we report that the combination of typical Type II PS and natural substrate carvacrol (CA) can significantly facilitate the Type I pathway to efficiently generate superoxide radical (O2 –•). Detailed mechanism study suggests that CA is activated into thymoquinone (TQ) by local singlet oxygen generated from the PS upon light irradiation. With TQ as an efficient electron transfer mediator, it promotes the conversion of O2 to O2 –• by PS via electron transfer-based Type I pathway. Notably, three classical Type II PSs are employed to demonstrate the universality of the proposed approach. The Type I PDT against S. aureus has been demonstrated under hypoxic conditions in vitro. Furthermore, this coupled photodynamic agent exhibits significant bactericidal activity with an antibacterial rate of 99.6% for the bacterial-infection female mice in the in vivo experiments. Here, we show a simple, effective, and universal method to endow traditional Type II PSs with hypoxic tolerance.
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- 2024
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31. γδ T cells and the PD-1/PD-L1 axis: a love–hate relationship in the tumor microenvironment
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Jian Liu, Min Wu, Yifan Yang, Zixuan Wang, Shan He, Xun Tian, and Hui Wang
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γδ T cells ,PD-1/PD-L1 ,Immune checkpoints (ICPs) ,Tumor microenvironment (TME) ,Immunosuppressive molecules ,Immune checkpoint inhibitors (ICIs) ,Medicine - Abstract
Abstract Gamma delta (γδ) T cells demonstrate strong cytotoxicity against diverse cancer cell types in an MHC-independent manner, rendering them promising contenders for cancer therapy. Although amplification and adoptive transfer of γδ T cells are being evaluated in the clinic, their therapeutic efficacy remains unsatisfactory, primarily due to the influence of the immunosuppressive tumor microenvironment (TME). Currently, the utilization of targeted therapeutic antibodies against inhibitory immune checkpoint (ICP) molecules is a viable approach to counteract the immunosuppressive consequences of the TME. Notably, PD-1/PD-L1 checkpoint inhibitors are considered primary treatment options for diverse malignancies, with the objective of preserving the response of αβ T cells. However, γδ T cells also infiltrate various human cancers and are important participants in cancer immunity, thereby influencing patient prognosis. Hence, it is imperative to comprehend the reciprocal impact of the PD-1/PD-L1 axis on γδ T cells. This understanding can serve as a therapeutic foundation for improving γδ T cells adoptive transfer therapy and may offer a novel avenue for future combined immunotherapeutic approaches.
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- 2024
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32. A mindfulness-based intervention improves perceived stress and mindfulness in university nursing students: a quasi-experimental study
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Yi-Ling Liu, Chao-Hsien Lee, and Li-Min Wu
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Mindfulness ,Perceived stress ,Nursing student ,Intervention ,Medicine ,Science - Abstract
Abstract University nursing students have been shown to experience psychological stress. A mindfulness-based intervention (MBI) may be a helpful tool for stress management. The aim of this study was to examine the effects of a MBI on improving mindfulness and reducing perceived stress in nursing students. A quasi-experimental study was conducted between July 2021 and February 2022. The intervention group participated in an 8-week mindfulness awareness course, which included 50 min of training and practice in mindfulness meditation techniques each week. Over the same 8 weeks, the control group watched a 50-min film each week. The mindful attention awareness scale (MAAS) and perceived stress scale (PSS) were administered before the intervention, intervention completion, and 2 and 6 months after the intervention. Data were analyzed using t test and generalized estimating equation. Overall, that the MBI showed a substantial effect on felt stress in comparison to the control group. When compared to the control group, the MBI showed a substantial impact on trait mindfulness. The MBI was beneficial for nursing students and could be considered a viable approach in nursing education to enhance mental wellbeing. It could be an effective method of relieving stress in a high-stress population.
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- 2024
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33. Multi-dimensional cell-free DNA-based liquid biopsy for sensitive early detection of gastric cancer
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Pengfei Yu, Ping Chen, Min Wu, Guangyu Ding, Hua Bao, Yian Du, Zhiyuan Xu, Litao Yang, Jingquan Fang, Xingmao Huang, Qian Lai, Jia Wei, Junrong Yan, Shanshan Yang, Peng He, Xue Wu, Yang Shao, Dan Su, and Xiangdong Cheng
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Liquid biopsy ,Cell-free DNA ,Early detection ,Gastric cancer ,Fragmentomics ,Medicine ,Genetics ,QH426-470 - Abstract
Abstract Background Gastric cancer is the fifth most common cancer type. Most patients are diagnosed at advanced stages with poor prognosis. A non-invasive assay for the detection of early-stage gastric cancer is highly desirable for reducing associated mortality. Methods We collected a prospective study cohort of 110 stage I–II gastric cancer patients and 139 non-cancer individuals. We performed whole-genome sequencing with plasma samples and profiled four types of cell-free DNA (cfDNA) characteristics, fragment size pattern, copy number variation, nucleosome coverage pattern, and single nucleotide substitution. With these differential profiles, we developed an ensemble model to detect gastric cancer signals. Further, we validated the assay in an in-house first validation cohort of 73 gastric cancer patients and 94 non-cancer individuals and an independent second validation cohort of 47 gastric cancer patients and 49 non-cancer individuals. Additionally, we evaluated the assay in a hypothetical 100,000 screening population by Monte Carlo simulation. Results Our cfDNA-based assay could distinguish early-stage gastric cancer from non-cancer at an AUROC of 0.962 (95% CI: 0.942–0.982) in the study cohort, 0.972 (95% CI: 0.953–0.992) in the first validation cohort and 0.937 (95% CI: 0.890–0.983) in the second validation cohort. The model reached a specificity of 92.1% (128/139) and a sensitivity of 88.2% (97/110) in the study cohort. In the first validation cohort, 91.5% (86/94) of non-cancer individuals and 91.8% (67/73) of gastric cancer patients were correctly identified. In the second validation cohort, 89.8% (44/49) of non-cancer individuals and 87.2% (41/47) of gastric cancer patients were accurately classified. Conclusions We introduced a liquid biopsy assay using multiple dimensions of cfDNA characteristics that could accurately identify early-stage gastric cancer from non-cancerous conditions. As a cost-effective non-invasive approach, it may provide population-wide benefits for the early detection of gastric cancer. Trial registration This study was registered on ClinicalTrials.gov under the identifier NCT05269056 on March 7, 2022.
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- 2024
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34. Muscle strength in ostensibly healthy non-diabetic subjects
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Ney-Min Wu, Chieh Chiang, Kun-Pei Lin, Yung-Ming Chen, and Wei-Shiung Yang
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Handgrip strength ,Sit-to-stand ,One-leg-standing ,Healthy volunteers ,Sarcopenia ,Taiwan ,Medicine (General) ,R5-920 - Abstract
Background/purpose: Sarcopenia and decreased muscle strength (dynapenia) are emerging health issues. However, the study exploring muscle strength changes of both upper and lower limbs at the same time among all age groups is rare. This study aims to investigate the muscle strength and to establish a muscle strength norm of an ostensibly healthy non-diabetic Asian population. Methods: From 2018 June to 2020 March, subjects (aged from 20 to
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- 2024
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35. Triglyceride‐glucose index's link to cardiovascular outcomes post‐percutaneous coronary intervention in China: a meta‐analysis
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ChangXin Sun, LanQing Hu, XiaoYa Li, XiaoNan Zhang, JiYe Chen, DeXiu Li, JingYi Zhang, LongTao Liu, and Min Wu
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Adverse cardiovascular events ,Non‐fatal myocardial infarction ,Percutaneous coronary intervention ,Revascularization ,Triglyceride‐glucose index ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Abstract Percutaneous coronary intervention (PCI) addresses myocardial ischaemia, but a significant subset of patients encounter major adverse cardiovascular events (MACE) post‐treatment. This meta‐analysis investigated the relationship between the post‐PCI triglyceride‐glucose (TyG) index and MACE. Comprehensive searches of the Embase, PubMed, Cochrane Library, and Web of Science databases were conducted up to 3 March 2023, using relevant keywords. The effect size was determined based on I2 statistic using random‐effects models. Cluster‐robust standard errors crafted the dose–response curve, and the GRADE Evaluation Scale was employed to rate the quality of evidence. The group with the highest TyG index had significantly higher post‐PCI MACE rates than the lowest index group, with hazard ratios (HRs) of 2.04 (95% CI 1.65–2.52; I2 = 77%). Each unit increase in TyG index corresponded to HRs of 1.82 for MACE (95% CI 1.34–2.46; I2 = 92%), 2.57 for non‐fatal MI (95% CI 1.49–4.41; I2 = 63%), and 2.06 for revascularization (95% CI 1.23–3.50; I2 = 90%). A linear relationship between TyG index and MACE risk was established (R2 = 0.6114). For all‐cause mortality, the HR was 1.93 (95% CI 1.35–2.75; I2 = 50%), indicating a higher mortality risk with elevated TyG index. The GRADE assessment yielded high certainty for non‐fatal MI but low certainty for all‐cause mortality, revascularization, and MACE. The TyG index may predict risks of post‐PCI MACE, all‐cause mortality, non‐fatal MI, and revascularization, with varied levels of certainty. A potential linear association between the TyG index and MACE post‐PCI was identified. Future research should validate these findings.
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- 2024
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36. Resolving multiple emissions of zero-dimensional heterometallic halide hybrid via pressure-triggered antenna effect
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Xinmiao Meng, Lin Wei, Min Wu, Aisen Li, Lei Li, Kai Wang, and Qian Li
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Metal halide ,self-trapped exciton emission ,high pressure ,metal-halogen cluster ,Materials of engineering and construction. Mechanics of materials ,TA401-492 - Abstract
Zero-dimensional heterometallic halide hybrids have emerged as multifunctional emitters, due to their multiple emission features. Herein, high pressure is employed to regulate the multiple emissions of (C9NH20)9[Pb3Br11](MnBr4)2. Pressure-triggered rigidness of [Pb3Br11]5- alters the emission equilibrium of STEs, generating a new blue-shifted STE emission. Meanwhile, [MnBr4]2- contraction promotes the confinement effect to increase the 4D-6A1 transition efficiency. Notably, [Pb3Br11]5- could act as ‘antenna' to enhance the Mn2+ emission with blocked back-energy transfer. It indicates that enough incident energy could excite the STE emission and 4D-6A1 transitions simultaneously, which clarifies the conventional understanding of the emission origin at ambient conditions.
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- 2024
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37. New camaenid genus and species from Zhejiang, East China (Eupulmonata, Helicoidea)
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Min Wu, Tian Chen, and Wang Shen
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Zoology ,QL1-991 - Abstract
We report a new land snail species representing a new genus from the mountainous area of Zhejiang, China. The snail has a depressed shell with granules all over the surface. The soft part of the new taxon is characterized by the presence of a mantle lobe whose form is reviewed herein across a wide range of helicoid snails, the presence of a developed epiphallic papilla, and the absence of a penial sheath, a dart sac apparatus and a flagellum. As indicated by a molecular-based phylogeny (16S + ITS2), the new taxon is deeply nested in the eastern Asian camaenid genera and shows a close relationship with the camaenids distributed in Central China.
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- 2024
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38. PD-1/CD80+ small extracellular vesicles from immunocytes induce cold tumours featured with enhanced adaptive immunosuppression
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Lin-Zhou Zhang, Jie-Gang Yang, Gai-Li Chen, Qi-Hui Xie, Qiu-Yun Fu, Hou-Fu Xia, Yi-Cun Li, Jue Huang, Ye Li, Min Wu, Hai-Ming Liu, Fu-Bing Wang, Ke-Zhen Yi, Huan-Gang Jiang, Fu-Xiang Zhou, Wei Wang, Zi-Li Yu, Wei Zhang, Ya-Hua Zhong, Zhuan Bian, Hong-Yu Yang, Bing Liu, and Gang Chen
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Science - Abstract
Abstract Only a minority of cancer patients benefit from immune checkpoint blockade therapy. Sophisticated cross-talk among different immune checkpoint pathways as well as interaction pattern of immune checkpoint molecules carried on circulating small extracellular vesicles (sEV) might contribute to the low response rate. Here we demonstrate that PD-1 and CD80 carried on immunocyte-derived sEVs (I-sEV) induce an adaptive redistribution of PD-L1 in tumour cells. The resulting decreased cell membrane PD-L1 expression and increased sEV PD-L1 secretion into the circulation contribute to systemic immunosuppression. PD-1/CD80+ I-sEVs also induce downregulation of adhesion- and antigen presentation-related molecules on tumour cells and impaired immune cell infiltration, thereby converting tumours to an immunologically cold phenotype. Moreover, synchronous analysis of multiple checkpoint molecules, including PD-1, CD80 and PD-L1, on circulating sEVs distinguishes clinical responders from those patients who poorly respond to anti-PD-1 treatment. Altogether, our study shows that sEVs carry multiple inhibitory immune checkpoints proteins, which form a potentially targetable adaptive loop to suppress antitumour immunity.
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- 2024
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39. Pan-cancer analysis reveals correlation between RAB3B expression and tumor heterogeneity, immune microenvironment, and prognosis in multiple cancers
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Xu-Sheng Liu, Ya-Lan Chen, Yu-Xuan Chen, Rui-Min Wu, Fan Tan, Ya-Lan Wang, Zi-Yue Liu, Yan Gao, and Zhi-Jun Pei
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RAB3B ,Pan-cancer ,Diagnosis ,Prognosis ,Immune infiltration ,Medicine ,Science - Abstract
Abstract RAB3B is essential for the transportation and secretion within cells. Its increased expression is linked to the development and progression of various malignancies. However, understanding of RAB3B’s involvement in carcinogenesis is mostly limited to specific cancer subtypes. Hence, exploring RAB3B's regulatory roles and molecular mechanisms through comprehensive cancer datasets might offer innovative approaches for managing clinical cancer. To examine the potential involvement of RAB3B in the development of cancer, we analyzed data from various sources including The Cancer Genome Atlas (TCGA), Genotype-Tissue Expression Project (GTEx), cBioPortal, HPA, UALCAN, and tissue microarray (TAM). Using bioinformatics techniques, we examined the correlation between RAB3B expression and prognosis, tumor heterogeneity, methylation modifications, and immune microenvironment across different cancer types. Our findings indicate that elevated RAB3B expression can independently predict prognosis in many tumors and has moderate accuracy for diagnosing most cancers. In most cancer types, we identified RAB3B mutations that showed a significant correlation with tumor mutational burden (TMB), mutant-allele tumor heterogeneity (MATH), and microsatellite instability (MSI). Abnormal DNA methylation patterns were also observed in most cancers compared to normal tissues. Additionally, we found significant correlations between RAB3B expression, immune cell infiltration, and immune scores across various cancers. Through pan-cancer analysis, we observed significant differences in RAB3B expression levels between tumors and normal tissues, making it a potential primary factor for cancer diagnosis and prognosis. The IHC results revealed that the expression of RAB3B in six types of tumors was consistent with the results of the pan-cancer analysis of the database. Furthermore, RAB3B showed potential associations with tumor heterogeneity and immunity. Thus, RAB3B can be utilized as an auxiliary diagnostic marker for early tumor detection and a prognostic biomarker for various tumor types.
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- 2024
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40. 生物柴油原料中不皂化物和脂肪酸分析Analysis of unsaponifiable matter and fatty acid in biodiesel raw material
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陈艳凤,曾建立,杜泽学,赵敏,吴芳青 CHEN Yanfeng,ZENG Jianli,DU Zexue,ZHAO Min,WU Fangqing
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生物柴油;不皂化物;脂肪酸;木本植物油脂;餐饮废油;酸化油 ,biodiesel ,unsaponifiable matter ,fatty acid ,woody plant oil ,waste cooking oil ,acidified oil ,Oils, fats, and waxes ,TP670-699 - Abstract
旨在确定生物柴油原料的可利用性,以可作为生物柴油原料的木本植物油脂、餐饮废油和酸化油为研究对象,分析其不皂化物和脂肪酸组成及含量。结果表明:棕榈油等7种木本植物油脂不皂化物含量低于1.10%,脂肪酸含量均高于91.50%,脂肪酸组成以油酸、亚油酸和亚麻酸为主(除棕榈油外);餐饮废油的不皂化物含量变化较大,脂肪酸含量在83.99%~94.87%之间,大部分餐饮废油脂肪酸组成以亚油酸和亚麻酸为主;5种酸化油的脂肪酸含量在71.35%~92.05%之间,椰子酸化油饱和脂肪酸占比为80.06%,其他4种酸化油的脂肪酸组成以不饱和脂肪酸为主。综上,7种木本植物油脂是优良的生物柴油原料,餐饮废油和酸化油作为原料制备生物柴油时要严格控制其质量指标。In order to determine the availability of biodiesel raw materials, woody plant oil, waste cooking oil and acidified oil that could be used as biodiesel raw materials were taken as the research objects, and the unsaponifiable matter content and fatty acid composition and content were analyzed. The results showed that the content of unsaponifiable matter of seven woody plant oils such as palm oil was lower than 1.10%, and the content of fatty acid was higher than 91.50%. The fatty acid composition was mainly composed of three unsaturated fatty acids, oleic acid, linoleic acid and linolenic acid (except for palm oil). The content of unsaponifiable matter in the waste cooking oil changed greatly, the content of fatty acid was between 83.99% and 94.87%, and the fatty acid composition was mainly composed of linoleic acid and linolenic acid for most waste cooking oil. The fatty acid content of five acidified oils was between 71.35% and 92.05%, the proportion of saturated fatty acid in acidified coconut oil was 80.06%, and the fatty acid composition of the other four acidified oils was mainly unsaturated fatty acid. In conclusion, seven woody plant oils are excellent biodiesel raw materials, and the raw material quality indicators for the preparation of biodiesel from waste cooking oil and acidified oil should be strictly controlled.
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- 2024
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41. Association of the Advanced Lung Cancer Inflammation Index (ALI) and Gustave Roussy Immune (GRIm) score with immune checkpoint inhibitor efficacy in patients with gastrointestinal and lung cancer
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Hao Jiang, Borui Li, Min Wu, Qimei Wang, and Yijin Li
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Advanced lung cancer inflammation index ,Gustave Roussy Immune score ,Cancers ,Immune checkpoint inhibitor ,Hepatocellular carcinoma modified Gustave Roussy Immune score ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Objective This study aimed to conduct a comprehensive analysis, evaluating the prognostic significance of the baseline Advanced Lung Cancer Inflammation Index (ALI) and Gustave Roussy Immune (GRIm) Score in patients undergoing immune checkpoint inhibitor (ICI) therapy. Methods A comprehensive search was performed across various databases, including PubMed, the Cochrane Library, EMBASE, and Google Scholar, until October 21, 2023, to compile relevant articles for analysis. The investigation encompassed diverse clinical outcomes, including overall survival (OS) and progression-free survival (PFS). Results This analysis included a total of 15 articles, comprising 19 studies involving 3335 patients. Among the 19 studies, nine studies focused on NSCLC, and six studies were conducted on HCC. Pooled results revealed that patients with elevated ALI levels experienced prolonged OS (HR: 0.51, 95% CI: 0.37–0.70, p 1 was associated with reduced OS (HR: 2.07, 95% CI: 1.47–2.92, p 2 showed a substantially decreased risk of mortality compared to individuals with HCC-GRIm score ≤ 2 (HR: 2.63, 95% CI: 1.89–3.65, p
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- 2024
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42. Nardilysin-regulated scission mechanism activates polo-like kinase 3 to suppress the development of pancreatic cancer
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Jie Fu, Jianhua Ling, Ching-Fei Li, Chi-Lin Tsai, Wenjuan Yin, Junwei Hou, Ping Chen, Yu Cao, Ya’an Kang, Yichen Sun, Xianghou Xia, Zhou Jiang, Kenei Furukawa, Yu Lu, Min Wu, Qian Huang, Jun Yao, David H. Hawke, Bih-Fang Pan, Jun Zhao, Jiaxing Huang, Huamin Wang, E. I. Mustapha Bahassi, Peter J. Stambrook, Peng Huang, Jason B. Fleming, Anirban Maitra, John A. Tainer, Mien-Chie Hung, Chunru Lin, and Paul J. Chiao
- Subjects
Science - Abstract
Abstract Pancreatic ductal adenocarcinoma (PDAC) develops through step-wise genetic and molecular alterations including Kras mutation and inactivation of various apoptotic pathways. Here, we find that development of apoptotic resistance and metastasis of Kras G12D -driven PDAC in mice is accelerated by deleting Plk3, explaining the often-reduced Plk3 expression in human PDAC. Importantly, a 41-kDa Plk3 (p41Plk3) that contains the entire kinase domain at the N-terminus (1-353 aa) is activated by scission of the precursor p72Plk3 at Arg354 by metalloendopeptidase nardilysin (NRDC), and the resulting p32Plk3 C-terminal Polo-box domain (PBD) is removed by proteasome degradation, preventing the inhibition of p41Plk3 by PBD. We find that p41Plk3 is the activated form of Plk3 that regulates a feed-forward mechanism to promote apoptosis and suppress PDAC and metastasis. p41Plk3 phosphorylates c-Fos on Thr164, which in turn induces expression of Plk3 and pro-apoptotic genes. These findings uncover an NRDC-regulated post-translational mechanism that activates Plk3, establishing a prototypic regulation by scission mechanism.
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- 2024
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43. Timing of early water intake post-general anaesthesia: a systematic review and meta-analysis
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Suwan Dai, Lingyan Chen, Min Wu, Liangyou Guo, and Rong Wang
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Early water intake ,General anaesthesia ,Resuscitation period ,Enhanced recovery after surgery ,Anesthesiology ,RD78.3-87.3 - Abstract
Abstract Background Early water intake has gained widespread attention considering enhanced recovery after surgery (ERAS). In the present systematic evaluation and meta-analysis, we assessed the effects of early water intake on the incidence of vomiting and aspiration in adult patients who received general anaesthesia on regaining consciousness during the resuscitation period. Objective To systematically analyse the results of randomised controlled trials on early postoperative water intake in patients who underwent different types of surgery under general anaesthesia, both at home and abroad, to further explore the safety and application of early water intake and provide an evidence-based foundation for clinical application. Design Systematic review and meta-analysis. Methods To perform the systematic evaluation and meta-analysis, we searched the Web of Science, CINAHL, Embase, PubMed, Cochrane Library, Sinomed, China National Knowledge Infrastructure (CNKI), Wanfang, and Vipshop databases to identify randomised controlled trial studies on early water intake in adult patients who received general anaesthesia. Results Herein, we included 10 publications with a total sample size of 5131 patients. Based on statistical analysis, there was no statistically significant difference in the incidence of vomiting (odds ratio [OR] = 0.81; 95% confidence interval [CI] [0.58–1.12]; p = 0.20; I-squared [I2] = 0%) and aspiration (OR = 0.78; 95%CI [0.45–1.37]; p = 0.40; I2 = 0%) between the two groups of patients on regaining consciousness post-general anaesthesia. Conclusion Based on the available evidence, early water intake after regaining consciousness post-anaesthesia did not increase the incidence of adverse complications when compared with traditional postoperative water abstinence. Early water intake could effectively improve patient thirst and facilitate the recovery of gastrointestinal function.
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- 2024
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44. Clinical phenotype and genetic function analysis of a family with hypomyelinating leukodystrophy-7 caused by POLR3A mutation
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Dan-dan Ruan, Xing-lin Ruan, Ruo‑li Wang, Xin-fu Lin, Yan-ping Zhang, Bin Lin, Shi-jie Li, Min Wu, Qian Chen, Jian-hui Zhang, Qiong Cheng, Yi-wu Zhang, Fan Lin, Jie-wei Luo, Zheng Zheng, and Yun-fei Li
- Subjects
POLR3-related hypomyelinating leukodystrophy ,POLR3A gene ,HLD-7 ,RNA polymerase III (Pol III) ,Myelination ,Medicine ,Science - Abstract
Abstract Hypomyelinating leukodystrophy (HLD) is a rare genetic heterogeneous disease that can affect myelin development in the central nervous system. This study aims to analyze the clinical phenotype and genetic function of a family with HLD-7 caused by POLR3A mutation. The proband (IV6) in this family mainly showed progressive cognitive decline, dentin dysplasia, and hypogonadotropic hypogonadism. Her three old brothers (IV1, IV2, and IV4) also had different degrees of ataxia, dystonia, or dysarthria besides the aforementioned manifestations. Their brain magnetic resonance imaging showed bilateral periventricular white matter atrophy, brain atrophy, and corpus callosum atrophy and thinning. The proband and her two living brothers (IV2 and IV4) were detected to carry a homozygous mutation of the POLR3A (NM_007055.4) gene c. 2300G > T (p.Cys767Phe), and her consanguineous married parents (III1 and III2) were p.Cys767Phe heterozygous carriers. In the constructed POLR3A wild-type and p.Cys767Phe mutant cells, it was seen that overexpression of wild-type POLR3A protein significantly enhanced Pol III transcription of 5S rRNA and tRNA Leu-CAA. However, although the mutant POLR3A protein overexpression was increased compared to the wild-type protein overexpression, it did not show the expected further enhancement of Pol III function. On the contrary, Pol III transcription function was frustrated (POLR3A, BC200, and tRNA Leu-CAA expression decreased), and MBP and 18S rRNA expressions were decreased. This study indicates that the POLR3A p.Cys767Phe variant caused increased expression of mutated POLR3A protein and abnormal expression of Pol III transcripts, and the mutant POLR3A protein function was abnormal.
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- 2024
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45. pH/GSH dual responsive nanosystem for nitric oxide generation enhanced type I photodynamic therapy
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Jianhua Zou, Zheng Li, Yang Zhu, Yucen Tao, Qing You, Fangfang Cao, Qinghe Wu, Min Wu, Junjie Cheng, Jianwei Zhu, and Xiaoyuan Chen
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TME responsive ,NO gas therapy ,NIR-II imaging ,Type I PDT ,Materials of engineering and construction. Mechanics of materials ,TA401-492 ,Biology (General) ,QH301-705.5 - Abstract
Tumor hypoxia diminishes the effectiveness of traditional type II photodynamic therapy (PDT) due to oxygen consumption. Type I PDT, which can operate independently of oxygen, is a viable option for treating hypoxic tumors. In this study, we have designed and synthesized JSK@PEG-IR820 NPs that are responsive to the tumor microenvironment (TME) to enhance type I PDT through glutathione (GSH) depletion. Our approach aims to expand the sources of therapeutic benefits by promoting the generation of superoxide radicals (O2−.) while minimizing their consumption. The diisopropyl group within PEG-IR820 serves a dual purpose: it functions as a pH sensor for the disassembly of the NPs to release JSK and enhances intermolecular electron transfer to IR820, facilitating efficient O2−. generation. Simultaneously, the release of JSK leads to GSH depletion, resulting in the generation of nitric oxide (NO). This, in turn, contributes to the formation of highly cytotoxic peroxynitrite (ONOO−.), thereby enhancing the therapeutic efficacy of these NPs. NIR-II fluorescence imaging guided therapy has achieved successful tumor eradication with the assistance of laser therapy.
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- 2024
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46. Microbial Heterogeneity Identification of Cerebral Thrombi Via Metagenomic Next‐Generation Sequencing‐Based Strategy
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Xi Chen, Yuxuan He, Linke Zhou, Xingtong Li, Meiling Jiang, Min Wu, Jing Li, Li Chen, Huan Xu, Li Gui, and Zhenhua Zhou
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cerebral thrombus ,metagenomic next‐generation sequencing ,microbiome ,thrombectomy ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Background Diagnosis of the cause of cerebral thrombi is vital for recurrence prevention but also challenging. The presence of the microbiome has recently been confirmed in thrombus, suggesting a novel approach to distinguish cerebral thrombi of different origins. However, little is known about whether there is heterogeneity in microbiological colonization of cerebral thrombi of different sources. Methods and Results Forty patients experiencing acute ischemic stroke were included and clinical data were collected. Metagenomic next‐generation sequencing was adopted to detect bacterial and genomic signatures of human cerebral thrombi samples. We found similar species diversity between the large‐artery atherosclerosis thrombi and cardioembolic thrombi but different species composition and distribution of cerebral thrombus microbiota. Compared with the group with cardioembolism, the group with large‐artery atherosclerosis showed a significantly higher relative abundance of Ralstonia insidiosa among the top 10 bacterial species in cerebral thrombi. Twenty operational taxonomy units were correlated with 11 clinical indicators of ischemic stroke. The Gene Ontology enrichment analysis revealed 9 different enriched biological processes (translation and carbohydrate metabolic process, etc). The enriched Kyoto Encyclopedia of Genes and Genomes pathways included ribosome, butanoate metabolism, and sulfur metabolism. Conclusions This study, based on the approach of metagenomic next‐generation sequencing, provides a diagnostic microbiological method to discriminate individuals with cardioembolic thrombi from those with large‐artery atherosclerosis thrombi with human cerebral thrombi samples. Our findings provide a fresh perspective on microbial heterogeneity of cerebral thrombi and demonstrate biological processes and pathway features of cerebral thrombi.
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- 2024
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47. A nomogram with Nottingham prognostic index for predicting locoregional recurrence in breast cancer patients
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Jianqing Zheng, Bingwei Zeng, Bifen Huang, Min Wu, Lihua Xiao, and Jiancheng Li
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Nottingham prognostic index ,primary breast cancer ,locoregional recurrence ,prediction model ,prognostic analysis ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
BackgroundThe Nottingham prognostic index (NPI) has been shown to negatively impact survival in breast cancer (BC). However, its ability to predict the locoregional recurrence (LRR) of BC remains still unclear. This study aims to determine whether a higher NPI serves as a significant predictor of LRR in BC.MethodsIn total, 238 patients with BC were included in this analysis, and relevant clinicopathological features were collected. Correlation analysis was performed between NPI scores and clinicopathological characteristics. The optimal nomogram model was determined by Akaike information criterion. The accuracy of the model’s predictions was evaluated using receiver operating characteristic curves (ROC curves), calibration curves and goodness of fit tests. The clinical application value was assessed through decision curve analysis.ResultsSix significant variables were identified, including age, body mass index (BMI), TNM stage, NPI, vascular invasion, perineural invasion (P
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- 2024
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48. Novel evidence of CNV deletion in KCTD13 related to the severity of isolated hypospadias in Chinese population
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Yijing Chen, Lijun Zhou, Fang Chen, Zhongzhong Chen, Yichen Huang, Yiqing Lv, Min Wu, Xiaoling Lin, and Hua Xie
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copy number variation ,isolated hypospadias ,Chinese children ,KCTD13 ,severity ,Pediatrics ,RJ1-570 - Abstract
BackgroundCNV in KCTD13 has been identified to influence androgen receptor function via its changes in gene dosage, which might contribute to hypospadias. However, there is lack of population-level evidence to assess the contribution of KCTD13 CNV to hypospadias.Methods349 isolated hypospadias patients were recruited and their genotyping was performed using real-time qPCR. We use Database of Genomic Variants (DGV) and CNV calls from SNP-array intensity data in 1,008 Chinese healthy men as reference.Results11.17% of patients were identified to have KCTD13 CNV deletion, significantly higher than 0.05% in DGV (P 0.05).ConclusionsWe demonstrate KCTD13 CNV deletion is strongly associated with hypospadias and its severity, but duplication is not, characterizing KCTD13 genetic variation in more detail than previously described.
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- 2024
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49. Machine learning-based nomogram for distinguishing between supratentorial extraventricular ependymoma and supratentorial glioblastoma
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Ling Chen, Weijiao Chen, Chuyun Tang, Yao Li, Min Wu, Lifang Tang, Lizhao Huang, Rui Li, and Tao Li
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machine learning ,nomogram ,glioblastoma ,ependymoma ,magnetic resonance imaging ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
ObjectiveTo develop a machine learning-based nomogram for distinguishing between supratentorial extraventricular ependymoma (STEE) and supratentorial glioblastoma (GBM).MethodsWe conducted a retrospective analysis on MRI datasets obtained from 140 patients who were diagnosed with STEE (n=48) and GBM (n=92) from two institutions. Initially, we compared seven different machine learning algorithms to determine the most suitable signature (rad-score). Subsequently, univariate and multivariate logistic regression analyses were performed to identify significant clinical predictors that can differentiate between STEE and GBM. Finally, we developed a nomogram by visualizing the rad-score and clinical features for clinical evaluation.ResultsThe TreeBagger (TB) outperformed the other six algorithms, yielding the best diagnostic efficacy in differentiating STEE from GBM, with area under the curve (AUC) values of 0.735 (95% CI: 0.625-0.845) and 0.796 (95% CI: 0.644-0.949) in the training set and test set. Furthermore, the nomogram incorporating both the rad-score and clinical variables demonstrated a robust predictive performance with an accuracy of 0.787 in the training set and 0.832 in the test set.ConclusionThe nomogram could serve as a valuable tool for non-invasively discriminating between STEE and GBM.
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- 2024
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50. Meta-transcriptomic analysis of companion animal infectomes reveals their diversity and potential roles in animal and human disease
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Wei-Chen Wu, Yuan-Fei Pan, Wu-Di Zhou, Yu-Qi Liao, Min-Wu Peng, Geng-Yan Luo, Gen-Yang Xin, Ya-Ni Peng, Tongqing An, Bo Li, Huanle Luo, Vanessa R. Barrs, Julia A. Beatty, Edward C. Holmes, Wenjing Zhao, Mang Shi, and Yuelong Shu
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zoonoses ,veterinary medicine ,metagenomics ,microbiome ,virome ,Microbiology ,QR1-502 - Abstract
ABSTRACT Companion animals such as cats and dogs harbor diverse microbial communities that can potentially impact human health due to close and frequent contact. To better characterize their total infectomes and assess zoonotic risks, we characterized the overall infectomes of companion animals (cats and dogs) and evaluated their potential zoonotic risks. Meta-transcriptomic analyses were performed on 239 samples from cats and dogs collected across China, identifying 24 viral species, 270 bacterial genera, and two fungal genera. Differences in the overall microbiome and infectome composition were compared across different animal species (cats or dogs), sampling sites (rectal or oropharyngeal), and health status (healthy or diseased). Diversity analyses revealed that viral abundance was generally higher in diseased animals compared to healthy ones, while differences in microbial composition were mainly driven by sampling site, followed by animal species and health status. Disease association analyses validated the pathogenicity of known pathogens and suggested potential pathogenic roles of previously undescribed bacteria and newly discovered viruses. Cross-species transmission analyses identified seven pathogens shared between cats and dogs, such as alphacoronavirus 1, which was detected in both oropharyngeal and rectal swabs albeit with differential pathogenicity. Further analyses showed that some viruses, like alphacoronavirus 1, harbored multiple lineages exhibiting distinct pathogenicity, tissue, or host preferences. Ultimately, a systematic evolutionary screening identified 27 potential zoonotic pathogens in this sample set, with far more bacterial than viral species, implying potential health threats to humans. Overall, our meta-transcriptomic analysis reveals a landscape of actively transcribing microorganisms in major companion animals, highlighting key pathogens, those with the potential for cross-species transmission, and possible zoonotic threats.IMPORTANCEThis study provides a comprehensive characterization of the entire community of infectious microbes (viruses, bacteria, and fungi) in companion animals like cats and dogs, termed the “infectome.” By analyzing hundreds of samples from across China, the researchers identified numerous known and novel pathogens, including 27 potential zoonotic agents that could pose health risks to both animals and humans. Notably, some of these zoonotic pathogens were detected even in apparently healthy pets, highlighting the importance of surveillance. The study also revealed key microbial factors associated with respiratory and gastrointestinal diseases in pets, as well as potential cross-species transmission events between cats and dogs. Overall, this work sheds light on the complex microbial landscapes of companion animals and their potential impacts on animal and human health, underscoring the need for monitoring and management of these infectious agents.
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- 2024
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