1. Development of a New Rapid Simultaneous Molecular Assay for the Detection of STI Pathogens and Drug Resistance-Associated Mutations.
- Author
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Michibuchi M, Yoshikane T, Matsuba Y, Yamazaki T, Hatakeyama S, Takanashi M, Oikawa T, and Suzuki H
- Abstract
Background: In the diagnosis of sexually transmitted infections, there has been a demand for multiple molecular assays to rapidly and simultaneously detect not only pathogens but also drug resistance-associated mutations., Methods: In this study, we developed a new rapid simultaneous molecular assay for the detection of Neisseria gonorrhoeae, Chlamydia trachomatis, Trichomonas vaginalis, Mycoplasma genitalium, and M. genitalium macrolide (23S rRNA gene, A2058/A2059) and fluoroquinolone (ParC gene, S83I) drug resistance-associated mutations in approximately 35 minutes. We evaluated the basic and prospective clinical performance of the newly developed assay., Results: The newly developed assay showed sufficient sensitivity to detect N. gonorrhoeae, C. trachomatis, T. vaginalis, and M. genitalium relative to the reference method. In a prospective study comparing the reference method across 178 urine samples from men and women, the total concordance rate, sensitivity, and specificity of the two assays for N. gonorrhoeae detection were 98.9% (176/178), 97.9% (46/47), and 99.2% (130/131), respectively; for C. trachomatis detection, they were 98.3% (175/178), 96.4% (81/84), and 100% (94/94); and for M. genitalium detection, they were 100% (178/178), 100% (20/20), and 100% (158/158). All samples were negative for T. vaginalis. Of the 16 M. genitalium-positive samples analyzed for the GENECUBE
TM assay, 81.3% (13/16) had A2058/A2059 mutations, 31.3% (5/16) had S83I mutations, and 25.0% (4/16) had simultaneous mutations, which was highly correlated with the sequence analysis., Conclusions: This study suggests that the recently developed assay performed similarly to existing nucleic acid amplification tests and enables rapid and simultaneous detection, including the detection of drug resistance-associated mutations., Competing Interests: Declarations. Funding: This study was financially supported by TOYOBO Co., Ltd. Conflicts of Interest/Competing Interests: Masashi Michibuchi, Yoshikane Takafumi, Yuma Matsuba, and Tomomi Yamazaki are salaried employees of TOYOBO Co., Ltd. Hiromichi Suzuki received a lecture and advisory fee from TOYOBO Co., Ltd. Ethics Approval: This study was performed in accordance with the relevant guidelines and regulations. The study protocol was approved by the Ethics Committee of the University of Tsukuba Hospital (approval number: R03-229). Consent to Participate: Written informed consent was obtained from the patients in the study. Consent for Publication: Not applicable. Availability of Data and Material: The data that support the findings of this study are available on request from the corresponding author. The data are not publicly available because they contain information that could compromise research participant. privacy/consent. Data sharing is not applicable to this article as no datasets were generated or analyzed during the current study. All data generated or analyzed during this study are included in this published article. Code Availability: Not applicable. Authors’ Contributions: MM, YT, TY, MT, TO, and HS conceived of and designed the study. MM, YT, YM, and SH performed the experiments. MM and SH analyzed the data. MM, YT, TY, MT, TO, and HS wrote the manuscript., (© 2025. The Author(s).)- Published
- 2025
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