58 results on '"Michelle Day"'
Search Results
2. GABAergic regulation of striatal spiny projection neurons depends upon their activity state.
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Michelle Day, Marziyeh Belal, William C Surmeier, Alexandria Melendez, David Wokosin, Tatiana Tkatch, Vernon R J Clarke, and D James Surmeier
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Biology (General) ,QH301-705.5 - Abstract
Synaptic transmission mediated by GABAA receptors (GABAARs) in adult, principal striatal spiny projection neurons (SPNs) can suppress ongoing spiking, but its effect on synaptic integration at subthreshold membrane potentials is less well characterized, particularly those near the resting down-state. To fill this gap, a combination of molecular, optogenetic, optical, and electrophysiological approaches were used to study SPNs in mouse ex vivo brain slices, and computational tools were used to model somatodendritic synaptic integration. In perforated patch recordings, activation of GABAARs, either by uncaging of GABA or by optogenetic stimulation of GABAergic synapses, evoked currents with a reversal potential near -60 mV in both juvenile and adult SPNs. Transcriptomic analysis and pharmacological work suggested that this relatively positive GABAAR reversal potential was not attributable to NKCC1 expression, but rather to HCO3- permeability. Regardless, from down-state potentials, optogenetic activation of dendritic GABAergic synapses depolarized SPNs. This GABAAR-mediated depolarization summed with trailing ionotropic glutamate receptor (iGluR) stimulation, promoting dendritic spikes and increasing somatic depolarization. Simulations revealed that a diffuse dendritic GABAergic input to SPNs effectively enhanced the response to dendritic iGluR signaling and promoted dendritic spikes. Taken together, our results demonstrate that GABAARs can work in concert with iGluRs to excite adult SPNs when they are in the resting down-state, suggesting that their inhibitory role is limited to brief periods near spike threshold. This state-dependence calls for a reformulation for the role of intrastriatal GABAergic circuits.
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- 2024
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3. Cholinergic deficits selectively boost cortical intratelencephalic control of striatum in male Huntington’s disease model mice
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Tristano Pancani, Michelle Day, Tatiana Tkatch, David L. Wokosin, Patricia González-Rodríguez, Jyothisri Kondapalli, Zhong Xie, Yu Chen, Vahri Beaumont, and D. James Surmeier
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Science - Abstract
The corticostriatal dysfunction underlying Huntington’s disease remains incompletely understood. Here, the authors find increased intratelencephalic connectivity resulting from deficient cholinergic transmission in a mouse model of Huntington’s disease.
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- 2023
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4. Feeding the fire: Annual grass invasion facilitates modeled fire spread across Inland Northwest forest‐mosaic landscapes
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Claire M. Tortorelli, John B. Kim, Nicole M. Vaillant, Karin Riley, Alex Dye, Ty C. Nietupski, Kevin C. Vogler, Rebecca Lemons, Michelle Day, Meg A. Krawchuk, and Becky K. Kerns
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FSim ,fuels ,grass‐fire cycle ,ventenata ,wildfire ,wildfire modeling ,Ecology ,QH540-549.5 - Abstract
Abstract Invasive annual grasses are a growing global concern because they facilitate larger and more frequent fires in historically fuel‐limited ecosystems. Forests of the western United States have remained relatively resistant to invasion by annual grasses and their subsequent impacts. However, where forests are adjacent to invaded areas, increased fire spread across ecotones could alter fire behavior and ecosystem resilience. In the Inland Northwest, USA, recent invasion by the annual grass ventenata (Ventenata dubia) has increased fine fuel loads and continuity in nonforest patches embedded within the forested landscape. Despite ventenata's rapid spread across the American West and growing management concern, little is known regarding how invasion influences fire within invaded vegetation types or its potential to alter landscape‐scale fire and management practices. Here, we examine how the ventenata invasion alters simulated fire across forest‐mosaic landscapes of the 7 million ha Blue Mountains Ecoregion using the large fire simulator (FSim) with custom fuel landscapes: present‐day invaded versus historic uninvaded. Invasion increased simulated mean fire size, burn probability, and flame lengths throughout the ecoregion, and the strength of these impacts varied by location and scale. Changes at the ecoregion scale were relatively modest given that fine fuels increased in only 2.8% of the ecoregion where ventenata invaded historically fuel‐limited vegetation types. However, strong localized changes were simulated within invaded patches (primarily dwarf‐shrublands) and where invasion facilitated fire spread into nearby forests. Within invaded patches, burn probabilities increased by 45%, and higher flame lengths required fire management strategies to shift from direct to indirect attack, requiring large machinery. Forests with 25% of their neighborhood invaded experienced a 28% increase in burn probability and 16% increase in the probability of experiencing flame lengths likely to produce crown fire (flame lengths >2.4 m). Increased canopy loss could have severe implications for forest resilience given that invasive grasses can heavily invade early seral dry conifer forests and limit postfire forest recovery. Our study demonstrates how annual grass invasion can influence fire behavior and resilience across forest landscapes despite primarily invading nonforested areas, and highlights invasion as an important management issue in an expansive forest‐mosaic ecosystem.
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- 2023
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5. Corrigendum: Continued STEM Commitment in Light of 2020 Events: A Perspective From the Illinois Louis Stokes Alliance for Minority Participation
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Christopher Botanga, Suzanne Blanc, LeRoy Jones, Michelle Day, and Mariel Charles
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systemic racism ,Lsamp ,stem education ,minority ,underrepresented minority ,COVID-19 pandemic ,Education (General) ,L7-991 - Published
- 2022
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6. Continued STEM Commitment in Light of 2020 Events: A Perspective From the Illinois Louis Stokes Alliance for Minority Participation
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Christopher Botanga, Suzanne Blanc, LeRoy Jones, Michelle Day, and Mariel Charles
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systemic racism ,Lsamp ,stem education ,minority ,underrepresented minority ,COVID-19 pandemic ,Education (General) ,L7-991 - Abstract
We evaluated the impact of the current COVID-19 pandemic and systemic racism on Underrepresented Minority (URM) students pursuing higher education in the STEM fields. Given the ongoing pandemic and the wave of protests in response to a series of police brutalities and systemic racism, URM students were thrown into uncharted territory. We reached out to a group of Black and Latino students who were already engaged in STEM. We began surveys and interviews by asking participants how they were and how their family and communities were doing. Next, participants answered questions about academic progress, challenges, and what support would be helpful. Our framework was based on a mixed-methods approach that draws on the work of Michael Patton (Qualitative Research & Evaluation Methods: Integrating Theory and Practice, 2014) and Veronica Thomas (American Journal of Evaluation, 2016, 38 (1), 7–28). Qualitative data from interviews were collected to capture perceptions, experiences, and recommendations of the study participants. Survey data were collected to reach as many students as possible and to provide numerical self-assessments of student experience, progression, and obstacles. All qualitative data were coded thematically using Atlas. ti, with the goal of illuminating emerging themes, and quantitative data were reviewed using descriptive statistics. Themes emerging from both data sets were compared, contrasted, and integrated in order to develop consistent findings that would enhance URM student perseverance and persistence in the face of confounding adversities. This study shows that ILSAMP COVID-19 Study participants maintained a commitment to pursuing a career in STEM. The findings of this study also indicate that the participants are stressed by their immediate circumstances and by the ongoing racism of U.S. society. These students ask for additional financial, academic, and networking support during the disruptions caused by the pandemic. More specifically, students request continued advising and connection with STEM professionals who can help them envision and enact a pathway to their own careers in STEM during this tumultuous period. The study validates the importance of key elements of the national LSAMP model as reported by Clewell et al. (Revitalizing the Nation’s Talent Pool in STEM, 2006). These are: academic integration, social integration, and professional integration. In addition, it identifies several other factors that are key to student success, including interventions that directly address racial trauma and economic hardship.
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- 2021
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7. Mutant huntingtin enhances activation of dendritic Kv4 K+ channels in striatal spiny projection neurons
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Luis Carrillo-Reid, Michelle Day, Zhong Xie, Alexandria E Melendez, Jyothisri Kondapalli, Joshua L Plotkin, David L Wokosin, Yu Chen, Geraldine J Kress, Michael Kaplitt, Ema Ilijic, Jaime N Guzman, C Savio Chan, and D James Surmeier
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Huntington's disease ,dendrite ,Kv4 ,KChIP ,zinc finger protein ,calcium imaging ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
Huntington’s disease (HD) is initially characterized by an inability to suppress unwanted movements, a deficit attributable to impaired synaptic activation of striatal indirect pathway spiny projection neurons (iSPNs). To better understand the mechanisms underlying this deficit, striatal neurons in ex vivo brain slices from mouse genetic models of HD were studied using electrophysiological, optical and biochemical approaches. Distal dendrites of iSPNs from symptomatic HD mice were hypoexcitable, a change that was attributable to increased association of dendritic Kv4 potassium channels with auxiliary KChIP subunits. This association was negatively modulated by TrkB receptor signaling. Dendritic excitability of HD iSPNs was rescued by knocking-down expression of Kv4 channels, by disrupting KChIP binding, by restoring TrkB receptor signaling or by lowering mutant-Htt (mHtt) levels with a zinc finger protein. Collectively, these studies demonstrate that mHtt induces reversible alterations in the dendritic excitability of iSPNs that could contribute to the motor symptoms of HD.
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- 2019
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8. Death in advertising: the last taboo?
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Jane Caulfield, Barbara J. Phillips, and Michelle Day
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Marketing ,Age differences ,Communication ,media_common.quotation_subject ,education ,05 social sciences ,Taboo ,050801 communication & media studies ,Advertising ,Contrast (music) ,behavioral disciplines and activities ,humanities ,0508 media and communications ,0502 economics and business ,050211 marketing ,Psychology ,media_common - Abstract
Portrayals of death in advertising for non-death related products are exceedingly rare, in sharp contrast to numerous death portrayals in other media sources such as movies and TV programs. Additio...
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- 2020
9. Cholinergic deficits selectively boost cortical intratelencephalic control of the striatum in Huntington’s disease
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Dalton Surmeier, Tristano Pancani, Michelle Day, Tatiana Tkatch, David Wokosin, Patricia Gonzalez Rodriguez, Jyothisri Kondapalli, Yu Chen, and Vahri Beaumont
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nervous system - Abstract
Huntington’s disease (HD) is a progressive, neurodegenerative disease caused by a CAG triplet expansion in the huntingtin gene. Although corticostriatal dysfunction has long been implicated in HD, the determinants and pathway specificity of this pathophysiology remain a matter of speculation. To help fill this gap, the zQ175+/- knockin mouse model of HD was studied using approaches that allowed optogenetic interrogation of intratelencephalic (IT) and pyramidal tract (PT) connections with principal striatal spiny projection neurons (SPNs). These studies revealed that the connectivity of IT, but not PT, neurons with direct and indirect pathway SPNs increased in early symptomatic zQ175+/- HD mice. This enhancement was attributable to reduced inhibitory control of IT terminals by striatal cholinergic interneurons (ChIs). Lowering mutant huntingtin selectively in ChIs with a virally-delivered zinc finger repressor protein normalized striatal acetylcholine release and IT functional connectivity – revealing a novel node in the network underlying corticostriatal pathophysiology in HD.
- Published
- 2021
10. Multi-omics in nasal epithelium reveals three axes of dysregulation for asthma risk in the African Diaspora populations
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Brooke Szczesny, Meher Preethi Boorgula, Sameer Chavan, Monica Campbell, Randi K. Johnson, Kai Kammers, Emma E. Thompson, Madison S. Cox, Gautam Shankar, Corey Cox, Andréanne Morin, Wendy Lorizio, Michelle Daya, Samir N. P. Kelada, Terri H. Beaty, Ayo P. Doumatey, Alvaro A. Cruz, Harold Watson, Edward T. Naureckas, B. Louise Giles, Ganiyu A. Arinola, Olumide Sogaolu, Adegoke G. Falade, Nadia N. Hansel, Ivana V. Yang, Christopher O. Olopade, Charles N. Rotimi, R. Clive Landis, Camila A. Figueiredo, Matthew C. Altman, Eimear Kenny, Ingo Ruczinski, Andrew H. Liu, Carole Ober, Margaret A. Taub, Kathleen C. Barnes, and Rasika A. Mathias
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Science - Abstract
Abstract Asthma has striking disparities across ancestral groups, but the molecular underpinning of these differences is poorly understood and minimally studied. A goal of the Consortium on Asthma among African-ancestry Populations in the Americas (CAAPA) is to understand multi-omic signatures of asthma focusing on populations of African ancestry. RNASeq and DNA methylation data are generated from nasal epithelium including cases (current asthma, N = 253) and controls (never-asthma, N = 283) from 7 different geographic sites to identify differentially expressed genes (DEGs) and gene networks. We identify 389 DEGs; the top DEG, FN1, was downregulated in cases (q = 3.26 × 10−9) and encodes fibronectin which plays a role in wound healing. The top three gene expression modules implicate networks related to immune response (CEACAM5; p = 9.62 × 10−16 and CPA3; p = 2.39 × 10−14) and wound healing (FN1; p = 7.63 × 10−9). Multi-omic analysis identifies FKBP5, a co-chaperone of glucocorticoid receptor signaling known to be involved in drug response in asthma, where the association between nasal epithelium gene expression is likely regulated by methylation and is associated with increased use of inhaled corticosteroids. This work reveals molecular dysregulation on three axes – increased Th2 inflammation, decreased capacity for wound healing, and impaired drug response – that may play a critical role in asthma within the African Diaspora.
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- 2024
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11. Allele-selective transcriptional repression of mutant HTT for the treatment of Huntington’s disease
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Yasaman Ataei, Larry Park, D. James Surmeier, B. Joseph Vu, Seung Kwak, Richard T. Surosky, Anand Narayanan, David A. Shivak, Josee Laganiere, Christer Halldin, Andrea Varrone, Matthew C. Mendel, Karsten Tillack, Lei Zhang, Bryan Zeitler, Dmitry Guschin, Lexi Kopan, Sarah J. Hinkley, Kimberly Marlen, Jocelynn R. Pearl, Qi Yu, Taneli Heikkinen, Annette Gärtner, Yalda Sedaghat, Christina Thiede, Miklós Tóth, Jennifer M. Cherone, David Paschon, Jyothisri Kondapalli, Andrea E. Kudwa, Ladislav Mrzljak, Rainier Amora, Kimmo Lehtimäki, Edward J. Rebar, Lenke Tari, Ignacio Munoz-Sanjuan, Jeffrey C. Miller, Sylvie Ramboz, Marie Svedberg, Steven Froelich, Irina Ankoudinova, Philip D. Gregory, Stephen Lam, Michelle Day, Jonathan Bard, Hoang Oanh B. Nguyen, Fyodor D. Urnov, Davis Li, Jenny Haggkvist, H. Steve Zhang, and Guijuan Qiao
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0301 basic medicine ,Zinc finger ,congenital, hereditary, and neonatal diseases and abnormalities ,Mutant ,General Medicine ,Biology ,medicine.disease ,General Biochemistry, Genetics and Molecular Biology ,nervous system diseases ,Cell biology ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Huntington's disease ,Transcription (biology) ,030220 oncology & carcinogenesis ,mental disorders ,medicine ,Gene silencing ,Allele ,Gene ,Transcription factor - Abstract
Huntington’s disease (HD) is a dominantly inherited neurodegenerative disorder caused by a CAG trinucleotide expansion in the huntingtin gene (HTT), which codes for the pathologic mutant HTT (mHTT) protein. Since normal HTT is thought to be important for brain function, we engineered zinc finger protein transcription factors (ZFP-TFs) to target the pathogenic CAG repeat and selectively lower mHTT as a therapeutic strategy. Using patient-derived fibroblasts and neurons, we demonstrate that ZFP-TFs selectively repress >99% of HD-causing alleles over a wide dose range while preserving expression of >86% of normal alleles. Other CAG-containing genes are minimally affected, and virally delivered ZFP-TFs are active and well tolerated in HD neurons beyond 100 days in culture and for at least nine months in the mouse brain. Using three HD mouse models, we demonstrate improvements in a range of molecular, histopathological, electrophysiological and functional endpoints. Our findings support the continued development of an allele-selective ZFP-TF for the treatment of HD. Zinc finger protein transcription factors are developed for the selective silencing of the mutant huntingtin gene in human neurons in vitro and multiple animal models of Huntington’s disease in vivo while preserving expression of the wild-type allele.
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- 2019
12. Comparison of the obturation density of gutta percha using cold lateral condensation and varying continuous wave of condensation techniques
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Jamie Michelle Day
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Materials science ,biology ,Condensation ,Continuous wave ,Gutta-percha ,Composite material ,biology.organism_classification ,Lateral condensation - Published
- 2019
13. Mutant huntingtin enhances activation of dendritic Kv4 K+ channels in striatal spiny projection neurons
- Author
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Ema Ilijic, Luis Carrillo-Reid, Zhong Xie, Michelle Day, Alexandria E Melendez, Jaime N. Guzman, Geraldine J. Kress, D. James Surmeier, C. Savio Chan, David L. Wokosin, Jyothisri Kondapalli, Yu Chen, Michael G. Kaplitt, and Joshua L. Plotkin
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0301 basic medicine ,zinc finger protein ,Huntingtin ,Mouse ,Kv4 ,QH301-705.5 ,Science ,Dendrite ,Tropomyosin receptor kinase B ,Medium spiny neuron ,Indirect pathway of movement ,General Biochemistry, Genetics and Molecular Biology ,dendrite ,03 medical and health sciences ,Mice ,0302 clinical medicine ,Calcium imaging ,Genetic model ,medicine ,Animals ,Biology (General) ,Neurons ,Huntingtin Protein ,KChIP ,General Immunology and Microbiology ,Chemistry ,General Neuroscience ,Huntington's disease ,General Medicine ,Corpus Striatum ,Electrophysiology ,Disease Models, Animal ,calcium imaging ,030104 developmental biology ,medicine.anatomical_structure ,Huntington Disease ,Shal Potassium Channels ,nervous system ,Medicine ,Mutant Proteins ,Neuroscience ,030217 neurology & neurosurgery ,Research Article - Abstract
Huntington’s disease (HD) is initially characterized by an inability to suppress unwanted movements, a deficit attributable to impaired synaptic activation of striatal indirect pathway spiny projection neurons (iSPNs). To better understand the mechanisms underlying this deficit, striatal neurons in ex vivo brain slices from mouse genetic models of HD were studied using electrophysiological, optical and biochemical approaches. Distal dendrites of iSPNs from symptomatic HD mice were hypoexcitable, a change that was attributable to increased association of dendritic Kv4 potassium channels with auxiliary KChIP subunits. This association was negatively modulated by TrkB receptor signaling. Dendritic excitability of HD iSPNs was rescued by knocking-down expression of Kv4 channels, by disrupting KChIP binding, by restoring TrkB receptor signaling or by lowering mutant-Htt (mHtt) levels with a zinc finger protein. Collectively, these studies demonstrate that mHtt induces reversible alterations in the dendritic excitability of iSPNs that could contribute to the motor symptoms of HD.
- Published
- 2019
14. Author response: Mutant huntingtin enhances activation of dendritic Kv4 K+ channels in striatal spiny projection neurons
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D. James Surmeier, Luis Carrillo-Reid, C. Savio Chan, Ema Ilijic, Michelle Day, Michael G. Kaplitt, Geraldine J. Kress, Yu Chen, Jaime N. Guzman, Joshua L. Plotkin, David L. Wokosin, Zhong Xie, Jyothisri Kondapalli, and Alexandria E Melendez
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Huntingtin ,Chemistry ,Mutant ,Medium spiny neuron ,K channels ,Cell biology - Published
- 2019
15. Epigenome-wide DNA methylation association study of circulating IgE levels identifies novel targets for asthmaResearch in context
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Kathryn Recto, Priyadarshini Kachroo, Tianxiao Huan, David Van Den Berg, Gha Young Lee, Helena Bui, Dong Heon Lee, Jessica Gereige, Chen Yao, Shih-Jen Hwang, Roby Joehanes, Scott T. Weiss, George T. O’Connor, Daniel Levy, Dawn L. DeMeo, Namiko Abe, Gonçalo Abecasis, Francois Aguet, Christine Albert, Laura Almasy, Alvaro Alonso, Seth Ament, Peter Anderson, Pramod Anugu, Deborah Applebaum-Bowden, Kristin Ardlie, Dan Arking, Donna K. Arnett, Allison Ashley-Koch, Stella Aslibekyan, Tim Assimes, Paul Auer, Dimitrios Avramopoulos, Najib Ayas, Adithya Balasubramanian, John Barnard, Kathleen Barnes, R. Graham Barr, Emily Barron-Casella, Lucas Barwick, Terri Beaty, Gerald Beck, Diane Becker, Lewis Becker, Rebecca Beer, Amber Beitelshees, Emelia Benjamin, Takis Benos, Marcos Bezerra, Larry Bielak, Joshua Bis, Thomas Blackwell, John Blangero, Nathan Blue, Eric Boerwinkle, Donald W. Bowden, Russell Bowler, Jennifer Brody, Ulrich Broeckel, Jai Broome, Deborah Brown, Karen Bunting, Esteban Burchard, Carlos Bustamante, Erin Buth, Brian Cade, Jonathan Cardwell, Vincent Carey, Julie Carrier, April P. Carson, Cara Carty, Richard Casaburi, Juan P. Casas Romero, James Casella, Peter Castaldi, Mark Chaffin, Christy Chang, Yi-Cheng Chang, Daniel Chasman, Sameer Chavan, Bo-Juen Chen, Wei-Min Chen, Yii-Der Ida Chen, Michael Cho, Seung Hoan Choi, Lee-Ming Chuang, Mina Chung, Ren-Hua Chung, Clary Clish, Suzy Comhair, Matthew Conomos, Elaine Cornell, Adolfo Correa, Carolyn Crandall, James Crapo, L. Adrienne Cupples, Joanne Curran, Jeffrey Curtis, Brian Custer, Coleen Damcott, Dawood Darbar, Sean David, Colleen Davis, Michelle Daya, Mariza de Andrade, Lisa de las Fuentes, Paul de Vries, Michael DeBaun, Ranjan Deka, Dawn DeMeo, Scott Devine, Huyen Dinh, Harsha Doddapaneni, Qing Duan, Shannon Dugan-Perez, Ravi Duggirala, Jon Peter Durda, Susan K. Dutcher, Charles Eaton, Lynette Ekunwe, Adel El Boueiz, Patrick Ellinor, Leslie Emery, Serpil Erzurum, Charles Farber, Jesse Farek, Tasha Fingerlin, Matthew Flickinger, Myriam Fornage, Nora Franceschini, Chris Frazar, Mao Fu, Stephanie M. Fullerton, Lucinda Fulton, Stacey Gabriel, Weiniu Gan, Shanshan Gao, Yan Gao, Margery Gass, Heather Geiger, Bruce Gelb, Mark Geraci, Soren Germer, Robert Gerszten, Auyon Ghosh, Richard Gibbs, Chris Gignoux, Mark Gladwin, David Glahn, Stephanie Gogarten, Da-Wei Gong, Harald Goring, Sharon Graw, Kathryn J. Gray, Daniel Grine, Colin Gross, C. Charles Gu, Yue Guan, Xiuqing Guo, Namrata Gupta, Jeff Haessler, Michael Hall, Yi Han, Patrick Hanly, Daniel Harris, Nicola L. Hawley, Jiang He, Ben Heavner, Susan Heckbert, Ryan Hernandez, David Herrington, Craig Hersh, Bertha Hidalgo, James Hixson, Brian Hobbs, John Hokanson, Elliott Hong, Karin Hoth, Chao (Agnes) Hsiung, Jianhong Hu, Yi-Jen Hung, Haley Huston, Chii Min Hwu, Marguerite Ryan Irvin, Rebecca Jackson, Deepti Jain, Cashell Jaquish, Jill Johnsen, Andrew Johnson, Craig Johnson, Rich Johnston, Kimberly Jones, Hyun Min Kang, Robert Kaplan, Sharon Kardia, Shannon Kelly, Eimear Kenny, Michael Kessler, Alyna Khan, Ziad Khan, Wonji Kim, John Kimoff, Greg Kinney, Barbara Konkle, Charles Kooperberg, Holly Kramer, Christoph Lange, Ethan Lange, Leslie Lange, Cathy Laurie, Cecelia Laurie, Meryl LeBoff, Jiwon Lee, Sandra Lee, Wen-Jane Lee, Jonathon LeFaive, David Levine, Joshua Lewis, Xiaohui Li, Yun Li, Henry Lin, Honghuang Lin, Xihong Lin, Simin Liu, Yongmei Liu, Yu Liu, Ruth J.F. Loos, Steven Lubitz, Kathryn Lunetta, James Luo, Ulysses Magalang, Michael Mahaney, Barry Make, Ani Manichaikul, Alisa Manning, JoAnn Manson, Lisa Martin, Melissa Marton, Susan Mathai, Rasika Mathias, Susanne May, Patrick McArdle, Merry-Lynn McDonald, Sean McFarland, Stephen McGarvey, Daniel McGoldrick, Caitlin McHugh, Becky McNeil, Hao Mei, James Meigs, Vipin Menon, Luisa Mestroni, Ginger Metcalf, Deborah A. Meyers, Emmanuel Mignot, Julie Mikulla, Nancy Min, Mollie Minear, Ryan L. Minster, Braxton D. Mitchell, Matt Moll, Zeineen Momin, May E. Montasser, Courtney Montgomery, Donna Muzny, Josyf C. Mychaleckyj, Girish Nadkarni, Rakhi Naik, Take Naseri, Pradeep Natarajan, Sergei Nekhai, Sarah C. Nelson, Bonnie Neltner, Caitlin Nessner, Deborah Nickerson, Osuji Nkechinyere, Kari North, Jeff O'Connell, Tim O'Connor, Heather Ochs-Balcom, Geoffrey Okwuonu, Allan Pack, David T. Paik, Nicholette Palmer, James Pankow, George Papanicolaou, Cora Parker, Gina Peloso, Juan Manuel Peralta, Marco Perez, James Perry, Ulrike Peters, Patricia Peyser, Lawrence S. Phillips, Jacob Pleiness, Toni Pollin, Wendy Post, Julia Powers Becker, Meher Preethi Boorgula, Michael Preuss, Bruce Psaty, Pankaj Qasba, Dandi Qiao, Zhaohui Qin, Nicholas Rafaels, Laura Raffield, Mahitha Rajendran, Vasan S. Ramachandran, D.C. Rao, Laura Rasmussen-Torvik, Aakrosh Ratan, Susan Redline, Robert Reed, Catherine Reeves, Elizabeth Regan, Alex Reiner, Muagututi‘a Sefuiva Reupena, Ken Rice, Stephen Rich, Rebecca Robillard, Nicolas Robine, Dan Roden, Carolina Roselli, Jerome Rotter, Ingo Ruczinski, Alexi Runnels, Pamela Russell, Sarah Ruuska, Kathleen Ryan, Ester Cerdeira Sabino, Danish Saleheen, Shabnam Salimi, Sejal Salvi, Steven Salzberg, Kevin Sandow, Vijay G. Sankaran, Jireh Santibanez, Karen Schwander, David Schwartz, Frank Sciurba, Christine Seidman, Jonathan Seidman, Frédéric Sériès, Vivien Sheehan, Stephanie L. Sherman, Amol Shetty, Aniket Shetty, Wayne Hui-Heng Sheu, M. Benjamin Shoemaker, Brian Silver, Edwin Silverman, Robert Skomro, Albert Vernon Smith, Jennifer Smith, Josh Smith, Nicholas Smith, Tanja Smith, Sylvia Smoller, Beverly Snively, Michael Snyder, Tamar Sofer, Nona Sotoodehnia, Adrienne M. Stilp, Garrett Storm, Elizabeth Streeten, Jessica Lasky Su, Yun Ju Sung, Jody Sylvia, Adam Szpiro, Daniel Taliun, Hua Tang, Margaret Taub, Kent Taylor, Matthew Taylor, Simeon Taylor, Marilyn Telen, Timothy A. Thornton, Machiko Threlkeld, Lesley Tinker, David Tirschwell, Sarah Tishkoff, Hemant Tiwari, Catherine Tong, Russell Tracy, Michael Tsai, Dhananjay Vaidya, Peter VandeHaar, Scott Vrieze, Tarik Walker, Robert Wallace, Avram Walts, Fei Fei Wang, Heming Wang, Jiongming Wang, Karol Watson, Jennifer Watt, Daniel E. Weeks, Joshua Weinstock, Bruce Weir, Lu-Chen Weng, Jennifer Wessel, Cristen Willer, Kayleen Williams, L. Keoki Williams, Scott Williams, Carla Wilson, James Wilson, Lara Winterkorn, Quenna Wong, Baojun Wu, Joseph Wu, Huichun Xu, Lisa Yanek, Ivana Yang, Ketian Yu, Seyedeh Maryam Zekavat, Yingze Zhang, Snow Xueyan Zhao, Wei Zhao, Xiaofeng Zhu, Elad Ziv, Michael Zody, and Sebastian Zoellner
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EWAS ,DNA methylation ,IgE ,Asthma ,RNA-Sequencing ,Mendelian randomization ,Medicine ,Medicine (General) ,R5-920 - Abstract
Summary: Background: Identifying novel epigenetic signatures associated with serum immunoglobulin E (IgE) may improve our understanding of molecular mechanisms underlying asthma and IgE-mediated diseases. Methods: We performed an epigenome-wide association study using whole blood from Framingham Heart Study (FHS; n = 3,471, 46% females) participants and validated results using the Childhood Asthma Management Program (CAMP; n = 674, 39% females) and the Genetic Epidemiology of Asthma in Costa Rica Study (CRA; n = 787, 41% females). Using the closest gene to each IgE-associated CpG, we highlighted biologically plausible pathways underlying IgE regulation and analyzed the transcription patterns linked to IgE-associated CpGs (expression quantitative trait methylation loci; eQTMs). Using prior UK Biobank summary data from genome-wide association studies of asthma and allergy, we performed Mendelian randomization (MR) for causal inference testing using the IgE-associated CpGs from FHS with methylation quantitative trait loci (mQTLs) as instrumental variables. Findings: We identified 490 statistically significant differentially methylated CpGs associated with IgE in FHS, of which 193 (39.3%) replicated in CAMP and CRA (FDR < 0.05). Gene ontology analysis revealed enrichment in pathways related to transcription factor binding, asthma, and other immunological processes. eQTM analysis identified 124 cis-eQTMs for 106 expressed genes (FDR < 0.05). MR in combination with drug-target analysis revealed CTSB and USP20 as putatively causal regulators of IgE levels (Bonferroni adjusted P
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- 2023
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16. Allele-selective transcriptional repression of mutant HTT for the treatment of Huntington's disease
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Bryan, Zeitler, Steven, Froelich, Kimberly, Marlen, David A, Shivak, Qi, Yu, Davis, Li, Jocelynn R, Pearl, Jeffrey C, Miller, Lei, Zhang, David E, Paschon, Sarah J, Hinkley, Irina, Ankoudinova, Stephen, Lam, Dmitry, Guschin, Lexi, Kopan, Jennifer M, Cherone, Hoang-Oanh B, Nguyen, Guijuan, Qiao, Yasaman, Ataei, Matthew C, Mendel, Rainier, Amora, Richard, Surosky, Josee, Laganiere, B Joseph, Vu, Anand, Narayanan, Yalda, Sedaghat, Karsten, Tillack, Christina, Thiede, Annette, Gärtner, Seung, Kwak, Jonathan, Bard, Ladislav, Mrzljak, Larry, Park, Taneli, Heikkinen, Kimmo K, Lehtimäki, Marie M, Svedberg, Jenny, Häggkvist, Lenke, Tari, Miklós, Tóth, Andrea, Varrone, Christer, Halldin, Andrea E, Kudwa, Sylvie, Ramboz, Michelle, Day, Jyothisri, Kondapalli, D James, Surmeier, Fyodor D, Urnov, Philip D, Gregory, Edward J, Rebar, Ignacio, Muñoz-Sanjuán, and H Steve, Zhang
- Subjects
Male ,Huntingtin Protein ,Transcription, Genetic ,Zinc Fingers ,Neuroprotection ,Mice, Inbred C57BL ,Disease Models, Animal ,Mice ,Huntington Disease ,Trinucleotide Repeats ,Mutation ,Mice, Inbred CBA ,Animals ,Humans ,Female ,Alleles ,Cells, Cultured - Abstract
Huntington's disease (HD) is a dominantly inherited neurodegenerative disorder caused by a CAG trinucleotide expansion in the huntingtin gene (HTT), which codes for the pathologic mutant HTT (mHTT) protein. Since normal HTT is thought to be important for brain function, we engineered zinc finger protein transcription factors (ZFP-TFs) to target the pathogenic CAG repeat and selectively lower mHTT as a therapeutic strategy. Using patient-derived fibroblasts and neurons, we demonstrate that ZFP-TFs selectively repress 99% of HD-causing alleles over a wide dose range while preserving expression of 86% of normal alleles. Other CAG-containing genes are minimally affected, and virally delivered ZFP-TFs are active and well tolerated in HD neurons beyond 100 days in culture and for at least nine months in the mouse brain. Using three HD mouse models, we demonstrate improvements in a range of molecular, histopathological, electrophysiological and functional endpoints. Our findings support the continued development of an allele-selective ZFP-TF for the treatment of HD.
- Published
- 2017
17. Observed reactions of Atlantic bottlenose dolphins at the National Aquarium during the 2011 Virginia earthquake
- Author
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Michelle Day, Cynthia Turner, Sue Hunter, and Mark R. Turner
- Subjects
Fishery ,Geography ,Aquatic Science ,Ecology, Evolution, Behavior and Systematics - Published
- 2014
18. Regulation of dendritic calcium release in striatal spiny projection neurons
- Author
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D. James Surmeier, Luke E. Sebel, C. Savio Chan, Joshua L. Plotkin, Weixing Shen, Igor Rafalovich, and Michelle Day
- Subjects
Male ,Calcium Channels, L-Type ,Physiology ,chemistry.chemical_element ,Mice, Transgenic ,Striatum ,Calcium ,Receptors, Metabotropic Glutamate ,Medium spiny neuron ,Methoxyhydroxyphenylglycol ,Receptors, Dopamine ,Mice ,Animals ,Calcium Signaling ,Long-term depression ,Calcium signaling ,Neurons ,General Neuroscience ,Articles ,Dendrites ,Coactivation ,Corpus Striatum ,Mice transgenic ,chemistry ,Metabotropic glutamate receptor ,Synapses ,cardiovascular system ,Female ,Neuroscience - Abstract
The induction of corticostriatal long-term depression (LTD) in striatal spiny projection neurons (SPNs) requires coactivation of group I metabotropic glutamate receptors (mGluRs) and L-type Ca2+ channels. This combination leads to the postsynaptic production of endocannabinoids that act presynaptically to reduce glutamate release. Although the necessity of coactivation is agreed upon, why it is necessary in physiologically meaningful settings is not. The studies described here attempt to answer this question by using two-photon laser scanning microscopy and patch-clamp electrophysiology to interrogate the dendritic synapses of SPNs in ex vivo brain slices from transgenic mice. These experiments revealed that postsynaptic action potentials induce robust ryanodine receptor (RYR)-dependent Ca2+-induced-Ca2+ release (CICR) in SPN dendritic spines. Depolarization-induced opening of voltage-gated Ca2+ channels was necessary for CICR. CICR was more robust in indirect pathway SPNs than in direct pathway SPNs, particularly in distal dendrites. Although it did not increase intracellular Ca2+ concentration alone, group I mGluR activation enhanced CICR and slowed Ca2+ clearance, extending the activity-evoked intraspine transient. The mGluR modulation of CICR was sensitive to antagonism of inositol trisphosphate receptors, RYRs, src kinase, and Cav1.3 L-type Ca2+ channels. Uncaging glutamate at individual spines effectively activated mGluRs and facilitated CICR induced by back-propagating action potentials. Disrupting CICR by antagonizing RYRs prevented the induction of corticostriatal LTD with spike-timing protocols. In contrast, mGluRs had no effect on the induction of long-term potentiation. Taken together, these results make clearer how coactivation of mGluRs and L-type Ca2+ channels promotes the induction of activity-dependent LTD in SPNs.
- Published
- 2013
19. STRONGER TEAM, BETTER CARE
- Author
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Michelle Day
- Subjects
Patient Care Team ,Advanced and Specialized Nursing ,medicine.medical_specialty ,Patient care team ,business.industry ,Family medicine ,Gastroenterology ,Medicine ,business - Published
- 2017
20. Differential Excitability and Modulation of Striatal Medium Spiny Neuron Dendrites
- Author
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Xinyoung Tian, David L. Wokosin, Michelle Day, D. James Surmeier, and Joshua L. Plotkin
- Subjects
Patch-Clamp Techniques ,Dendritic spine ,Green Fluorescent Proteins ,Models, Neurological ,Action Potentials ,Mice, Transgenic ,Striatum ,Biology ,Medium spiny neuron ,Article ,Animal Diseases ,Mice ,Dopamine ,medicine ,Animals ,Computer Simulation ,Patch clamp ,Cells, Cultured ,Cerebral Cortex ,Neurons ,Analysis of Variance ,Microscopy, Confocal ,Receptors, Dopamine D2 ,Receptors, Dopamine D1 ,General Neuroscience ,Parkinson Disease ,Dendrites ,Coculture Techniques ,Corpus Striatum ,Potassium channel ,Animals, Newborn ,Synapses ,Biophysics ,Calcium ,Glutamatergic synapse ,Neuroscience ,Acetylcholine ,medicine.drug - Abstract
The loss of striatal dopamine (DA) in Parkinson's disease (PD) models triggers a cell-type-specific reduction in the density of dendritic spines in D2receptor-expressing striatopallidal medium spiny neurons (D2MSNs). How the intrinsic properties of MSN dendrites, where the vast majority of DA receptors are found, contribute to this adaptation is not clear. To address this question, two-photon laser scanning microscopy (2PLSM) was performed in patch-clamped mouse MSNs identified in striatal slices by expression of green fluorescent protein (eGFP) controlled by DA receptor promoters. These studies revealed that single backpropagating action potentials (bAPs) produced more reliable elevations in cytosolic Ca2+concentration at distal dendritic locations in D2MSNs than at similar locations in D1receptor-expressing striatonigral MSNs (D1MSNs). In both cell types, the dendritic Ca2+entry elicited by bAPs was enhanced by pharmacological blockade of Kv4, but not Kv1 K+channels. Local application of DA depressed dendritic bAP-evoked Ca2+transients, whereas application of ACh increased these Ca2+transients in D2MSNs, but not in D1MSNs. After DA depletion, bAP-evoked Ca2+transients were enhanced in distal dendrites and spines in D2MSNs. Together, these results suggest that normally D2MSN dendrites are more excitable than those of D1MSNs and that DA depletion exaggerates this asymmetry, potentially contributing to adaptations in PD models.
- Published
- 2008
21. A Translational Profiling Approach for the Molecular Characterization of CNS Cell Types
- Author
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Anne Schaefer, Mayte Suárez-Fariñas, Dietrich A. Stephan, Jayms D. Peterson, Michelle Day, Cordelia Schwarz, Paul Greengard, Nathaniel Heintz, D. James Surmeier, Myriam Heiman, Keri E. Ramsey, and Shiaoching Gong
- Subjects
Central Nervous System ,Genetically modified mouse ,Chromosomes, Artificial, Bacterial ,Cell type ,Transgene ,Green Fluorescent Proteins ,Cell ,Mice, Transgenic ,Computational biology ,Biology ,Models, Biological ,Ribosome ,General Biochemistry, Genetics and Molecular Biology ,MOLNEURO ,Article ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Cocaine ,Dopamine Uptake Inhibitors ,Ribosomal protein ,medicine ,Animals ,Gene ,030304 developmental biology ,Neurons ,Genetics ,0303 health sciences ,Bacterial artificial chromosome ,Biochemistry, Genetics and Molecular Biology(all) ,Brain ,Immunohistochemistry ,medicine.anatomical_structure ,Genetic Techniques ,Protein Biosynthesis ,CELLBIO ,Ribosomes ,030217 neurology & neurosurgery - Abstract
The cellular heterogeneity of the brain confounds efforts to elucidate the biological properties of distinct neuronal populations. We have now developed a new ‘BACarray’ methodology, based on affinity purification of polysomal mRNAs from genetically defined cell populations. The utility of this approach is illustrated by the comparative analysis of four types of neurons, revealing hundreds of genes that distinguish these four cell populations. Even two morphologically indistinguishable subclasses of MSNs display vastly different translational profiles. Striatopallidal neurons are characterized by a strong and cell-specific release of intracellular Ca2+ in response to sphingosine 1-phosphate, consistent with their selective expression of Gpr6. In contrast, striatonigral neurons demonstrate a selective cell-specific increase in GABAA receptor subunits in response to chronic cocaine treatment. BACarray translational profiling is a generalizable method useful for the identification of molecular changes in any genetically defined cell type in response to genetic alterations, disease, or pharmacological perturbations.
- Published
- 2008
- Full Text
- View/download PDF
22. Dopaminergic Control of Corticostriatal Long-Term Synaptic Depression in Medium Spiny Neurons Is Mediated by Cholinergic Interneurons
- Author
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Zhongfeng Wang, Henry H. Yin, Michelle Day, Jennifer Ronesi, Li Kai, Tatiana Tkatch, Jun B. Ding, David M. Lovinger, and D. James Surmeier
- Subjects
Calcium Channels, L-Type ,Neuroscience(all) ,Dopamine ,Presynaptic Terminals ,Mice, Transgenic ,Striatum ,Medium spiny neuron ,Synaptic Transmission ,MOLNEURO ,Synapse ,Mice ,Organ Culture Techniques ,Interneurons ,Neural Pathways ,Animals ,Learning ,Calcium Signaling ,Long-term depression ,Long-Term Synaptic Depression ,Cerebral Cortex ,Mice, Knockout ,Receptors, Dopamine D2 ,General Neuroscience ,Receptor, Muscarinic M1 ,Dopaminergic ,Neural Inhibition ,Acetylcholine ,Corpus Striatum ,Associative learning ,Mice, Inbred C57BL ,nervous system ,SIGNALING ,Cholinergic ,SYSNEURO ,Psychology ,Excitatory Amino Acid Antagonists ,Neuroscience - Abstract
Long-term depression (LTD) of the synapse formed between cortical pyramidal neurons and striatal medium spiny neurons is central to many theories of motor plasticity and associative learning. The induction of LTD at this synapse is thought to depend upon D(2) dopamine receptors localized in the postsynaptic membrane. If this were true, LTD should be inducible in neurons from only one of the two projection systems of the striatum. Using transgenic mice in which neurons that contribute to these two systems are labeled, we show that this is not the case. Rather, in both cell types, the D(2) receptor dependence of LTD induction reflects the need to lower M(1) muscarinic receptor activity-a goal accomplished by D(2) receptors on cholinergic interneurons. In addition to reconciling discordant tracts of the striatal literature, these findings point to cholinergic interneurons as key mediators of dopamine-dependent striatal plasticity and learning.
- Published
- 2006
23. Dendritic Excitability of Mouse Frontal Cortex Pyramidal Neurons Is Shaped by the Interaction among HCN, Kir2, and KleakChannels
- Author
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David B. Carr, D. James Surmeier, Ema Ilijic, Michelle Day, Tatiana Tkatch, and Sasha Ulrich
- Subjects
Potassium Channels ,Voltage clamp ,Cyclic Nucleotide-Gated Cation Channels ,In Vitro Techniques ,Summation ,Ion Channels ,Mice ,Potassium Channels, Tandem Pore Domain ,Pregnancy ,Hyperpolarization-Activated Cyclic Nucleotide-Gated Channels ,HCN channel ,Animals ,Potassium Channels, Inwardly Rectifying ,Cells, Cultured ,Membrane potential ,biology ,Inward-rectifier potassium ion channel ,Chemistry ,Pyramidal Cells ,General Neuroscience ,Excitatory Postsynaptic Potentials ,Depolarization ,Dendrites ,Hyperpolarization (biology) ,Frontal Lobe ,Mice, Inbred C57BL ,biology.protein ,Excitatory postsynaptic potential ,Female ,Neuroscience ,Cellular/Molecular - Abstract
Dendritically placed, voltage-sensitive ion channels are key regulators of neuronal synaptic integration. In several cell types, hyperpolarization/cyclic nucleotide gated (HCN) cation channels figure prominently in dendritic mechanisms controlling the temporal summation of excitatory synaptic events. In prefrontal cortex, the sustained activity of pyramidal neurons in working memory tasks is thought to depend on the temporal summation of dendritic excitatory inputs. Yet we know little about how this is accomplished in these neurons and whether HCN channels play a role. To gain a better understanding of this process, layer V–VI pyramidal neurons in slices of mouse prelimbic and infralimbic cortex were studied. Somatic voltage-clamp experiments revealed the presence of rapidly activating and deactivating cationic currents attributable to HCN1/HCN2 channels. These channels were open at the resting membrane potential and had an apparent half-activation voltage near –90 mV. In the same voltage range, K+currents attributable to Kir2.2/2.3 and K+-selective leak (Kleak) channels were prominent. Computer simulations grounded in the biophysical measurements suggested a dynamic interaction among Kir2, Kleak, and HCN channel currents in shaping membrane potential and the temporal integration of synaptic potentials. This inference was corroborated by experiment. Blockade of Kir2/Kleakchannels caused neurons to depolarize, leading to the deactivation of HCN channels, the initiation of regular spiking (4–5 Hz), and enhanced temporal summation of EPSPs. These studies show that HCN channels are key regulators of synaptic integration in prefrontal pyramidal neurons but that their functional contribution is dependent on a partnership with Kir2 and Kleakchannels.
- Published
- 2005
24. Transmitter Modulation of Slow, Activity-Dependent Alterations in Sodium Channel Availability Endows Neurons with a Novel Form of Cellular Plasticity
- Author
-
Todd Scheuer, David B. Carr, Michelle Day, William A. Catterall, D. James Surmeier, Angela R. Cantrell, and Joshua E. Held
- Subjects
Patch-Clamp Techniques ,Neuroscience(all) ,Models, Neurological ,Gating ,Biology ,Sodium Channels ,Membrane Potentials ,Mice ,Organ Culture Techniques ,GTP-Binding Proteins ,Animals ,Premovement neuronal activity ,Phosphorylation ,Receptor ,G protein-coupled receptor ,Neurons ,Neuronal Plasticity ,General Neuroscience ,Sodium channel ,Brain ,Cellular plasticity ,Modulation ,Receptors, Serotonin ,Biophysics ,Ion Channel Gating ,Protein Kinases ,Neuroscience - Abstract
Voltage-gated Na + channels are major targets of G protein-coupled receptor (GPCR)-initiated signaling cascades. These cascades act principally through protein kinase-mediated phosphorylation of the channel α subunit. Phosphorylation reduces Na + channel availability in most instances without producing major alterations of fast channel gating. The nature of this change in availability is poorly understood. The results described here show that both GPCR- and protein kinase-dependent reductions in Na + channel availability are mediated by a slow, voltage-dependent process with striking similarity to slow inactivation, an intrinsic gating mechanism of Na + channels. This process is strictly associated with neuronal activity and develops over seconds, endowing neurons with a novel form of cellular plasticity shaping synaptic integration, dendritic electrogenesis, and repetitive discharge.
- Published
- 2003
25. Global Biobank analyses provide lessons for developing polygenic risk scores across diverse cohorts
- Author
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Ying Wang, Shinichi Namba, Esteban Lopera, Sini Kerminen, Kristin Tsuo, Kristi Läll, Masahiro Kanai, Wei Zhou, Kuan-Han Wu, Marie-Julie Favé, Laxmi Bhatta, Philip Awadalla, Ben Brumpton, Patrick Deelen, Kristian Hveem, Valeria Lo Faro, Reedik Mägi, Yoshinori Murakami, Serena Sanna, Jordan W. Smoller, Jasmina Uzunovic, Brooke N. Wolford, Cristen Willer, Eric R. Gamazon, Nancy J. Cox, Ida Surakka, Yukinori Okada, Alicia R. Martin, Jibril Hirbo, Kuan-Han H. Wu, Humaira Rasheed, Jibril B. Hirbo, Arjun Bhattacharya, Huiling Zhao, Esteban A. Lopera-Maya, Sinéad B. Chapman, Juha Karjalainen, Mitja Kurki, Maasha Mutaamba, Juulia J. Partanen, Ben M. Brumpton, Sameer Chavan, Tzu-Ting Chen, Michelle Daya, Yi Ding, Yen-Chen A. Feng, Christopher R. Gignoux, Sarah E. Graham, Whitney E. Hornsby, Nathan Ingold, Ruth Johnson, Triin Laisk, Kuang Lin, Jun Lv, Iona Y. Millwood, Priit Palta, Anita Pandit, Michael H. Preuss, Unnur Thorsteinsdottir, Matthew Zawistowski, Xue Zhong, Archie Campbell, Kristy Crooks, Geertruida H. de Bock, Nicholas J. Douville, Sarah Finer, Lars G. Fritsche, Christopher J. Griffiths, Yu Guo, Karen A. Hunt, Takahiro Konuma, Riccardo E. Marioni, Jansonius Nomdo, Snehal Patil, Nicholas Rafaels, Anne Richmond, Jonathan A. Shortt, Peter Straub, Ran Tao, Brett Vanderwerff, Kathleen C. Barnes, Marike Boezen, Zhengming Chen, Chia-Yen Chen, Judy Cho, George Davey Smith, Hilary K. Finucane, Lude Franke, Andrea Ganna, Tom R. Gaunt, Tian Ge, Hailiang Huang, Jennifer Huffman, Jukka T. Koskela, Clara Lajonchere, Matthew H. Law, Liming Li, Cecilia M. Lindgren, Ruth J.F. Loos, Stuart MacGregor, Koichi Matsuda, Catherine M. Olsen, David J. Porteous, Jordan A. Shavit, Harold Snieder, Richard C. Trembath, Judith M. Vonk, David Whiteman, Stephen J. Wicks, Cisca Wijmenga, John Wright, Jie Zheng, Xiang Zhou, Michael Boehnke, Daniel H. Geschwind, Caroline Hayward, Eimear E. Kenny, Yen-Feng Lin, Hilary C. Martin, Sarah E. Medland, Aarno V. Palotie, Bogdan Pasaniuc, Kari Stefansson, David A. van Heel, Robin G. Walters, Sebastian Zöllner, Cristen J. Willer, Mark J. Daly, and Benjamin M. Neale
- Subjects
Global-Biobank Meta-analysis Initiative ,polygenic risk scores ,multi-ancestry genetic prediction ,accuracy heterogeneity ,Genetics ,QH426-470 ,Internal medicine ,RC31-1245 - Abstract
Summary: Polygenic risk scores (PRSs) have been widely explored in precision medicine. However, few studies have thoroughly investigated their best practices in global populations across different diseases. We here utilized data from Global Biobank Meta-analysis Initiative (GBMI) to explore methodological considerations and PRS performance in 9 different biobanks for 14 disease endpoints. Specifically, we constructed PRSs using pruning and thresholding (P + T) and PRS-continuous shrinkage (CS). For both methods, using a European-based linkage disequilibrium (LD) reference panel resulted in comparable or higher prediction accuracy compared with several other non-European-based panels. PRS-CS overall outperformed the classic P + T method, especially for endpoints with higher SNP-based heritability. Notably, prediction accuracy is heterogeneous across endpoints, biobanks, and ancestries, especially for asthma, which has known variation in disease prevalence across populations. Overall, we provide lessons for PRS construction, evaluation, and interpretation using GBMI resources and highlight the importance of best practices for PRS in the biobank-scale genomics era.
- Published
- 2023
- Full Text
- View/download PDF
26. Synaptically driven state transitions in distal dendrites of striatal spiny neurons
- Author
-
Joshua L. Plotkin, Michelle Day, and D. James Surmeier
- Subjects
Dendritic spine ,Adenosine ,N-Methylaspartate ,Patch-Clamp Techniques ,Time Factors ,Adenosine A2 Receptor Agonists ,Nerve net ,Dopamine Agents ,Green Fluorescent Proteins ,Models, Neurological ,Biophysics ,Spider Venoms ,Mice, Transgenic ,Tetrodotoxin ,Biology ,In Vitro Techniques ,Article ,Membrane Potentials ,Mice ,Nickel ,Phenethylamines ,medicine ,Excitatory Amino Acid Agonists ,Animals ,Patch clamp ,Anesthetics, Local ,2-Amino-5-phosphonovalerate ,Membrane potential ,Neurons ,Microscopy, Confocal ,General Neuroscience ,Glutamate receptor ,Excitatory Postsynaptic Potentials ,Dendrites ,Calcium Channel Blockers ,Corpus Striatum ,Electric Stimulation ,medicine.anatomical_structure ,Animals, Newborn ,Mibefradil ,Synapses ,Excitatory postsynaptic potential ,NMDA receptor ,Calcium ,Nerve Net ,Neuroscience ,Excitatory Amino Acid Antagonists - Abstract
Striatal spiny neurons (SPNs) associate a diverse array of cortically processed information to regulate action selection. But how this is done by SPNs is poorly understood. A key step in this process is the transition of SPNs from a hyperpolarized 'down state' to a sustained, depolarized 'up state'. These transitions are thought to reflect a sustained synaptic barrage, involving the coordination of hundreds of pyramidal neurons. Indeed, in mice, simulation of cortical input by glutamate uncaging on proximal dendritic spines produced potential changes in SPNs that tracked input time course. However, brief glutamate uncaging at spines on distal dendrites evoked somatic up states lasting hundreds of milliseconds. These regenerative events depended upon both NMDA receptors and voltage-dependent Ca(2+) channels. Moreover, they were bidirectionally regulated by dopamine receptor signaling. This capacity not only changes our model of how up states are generated in SPNs, it also has fundamental implications for the associative process underlying action selection.
- Published
- 2011
27. The role of dopamine in modulating the structure and function of striatal circuits
- Author
-
Savio Chan, D. James Surmeier, Joshua L. Plotkin, Tracy S. Gertler, Weixing Shen, Michelle Day, and Xianyong Tian
- Subjects
Neurons ,Dendritic spine ,Neuronal Plasticity ,Receptors, Dopamine D2 ,Receptor expression ,Dendritic Spines ,Dopamine ,Receptors, Dopamine D1 ,Mice, Transgenic ,Parkinson Disease ,Biology ,Medium spiny neuron ,Article ,Corpus Striatum ,Associative learning ,Mice ,Dopamine receptor D2 ,Synaptic plasticity ,medicine ,Animals ,Humans ,Neuroscience ,medicine.drug ,G protein-coupled receptor - Abstract
Dopamine (DA) is a key regulator of action selection and associative learning. The striatum has long been thought to be a major locus of DA action in this process. Although all striatal cell types express G protein-coupled receptors for DA, the effects of DA on principal medium spiny neurons (MSNs) understandably have received the most attention. In the two principal classes of MSN, DA receptor expression diverges, with striatonigral MSNs robustly expressing D1 receptors and striatopallidal MSNs expressing D2 receptors. In the last couple of years, our understanding of how these receptors and the intracellular signalling cascades that they couple to modulate dendritic physiology and synaptic plasticity has rapidly expanded, fuelled in large measure by the development of new optical and genetic tools. These tools also have enabled a rapid expansion of our understanding of the striatal adaptations in models of Parkinson’s disease. This chapter highlights some of the major advances in these areas.
- Published
- 2010
28. D1 and D2 Dopamine Receptor Modulation of Glutamatergic Signaling in Striatal Medium Spiny Neurons
- Author
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D. James Surmeier, Weixing Shen, Michelle Day, Savio Chan, and Tracy S. Gertler
- Subjects
Glutamatergic ,Modulation ,Dopamine receptor ,Biology ,Medium spiny neuron ,Neuroscience - Published
- 2010
29. Contributors
- Author
-
Véronique M. André, Gordon W. Arbuthnott, Nigel S. Bamford, David Belin, Marianne Benoit-Marand, Hagai Bergman, Debra A. Bergstrom, Sandrine Betuing, Corinne Beurrier, Erwan Bezard, Javier Blesa, J. Paul Bolam, Karen Brami-Cherrier, Stephanie E. Bronson, Jocelyne Caboche, Paolo Calabresi, Anna R. Carta, M. Angela Cenci, Carlos Cepeda, Savio Chan, Stephane Charpier, Veronique Coizet, Rui M. Costa, Margaret I. Davis, Michelle Day, Mahlon R. DeLong, Massimiliano Di Filippo, Piers C. Emson, Barry J. Everitt, Richard L.M. Faull, Adriana Galvan, Charles R. Gerfen, Tracy Gertler, Joshua A. Goldberg, Francois Gonon, Henk J. Groenewegen, Suzanne N. Haber, Kristen A. Horner, Zvi Israel, Kristen A. Keefe, Hitoshi Kita, Christine Konradi, Michael S. Levine, David M. Lovinger, Gloria E. Meredith, Micaela Morelli, Shay Moshel, José A. Obeso, Patricio O'Donnell, Dorothy E. Oorschot, Mark G. Packard, Jeanne T. Paz, Dietmar Plenz, Patrizia Popoli, Grégory Porras, Dinesh Raju, Peter Redgrave, Anton J. Reiner, John Reynolds, Michal Rivlin-Etzion, Boris Rosin, Emmanuel Roze, Weixing Shen, Nicola Simola, Maya Slovik, Yoland Smith, Heinz Steiner, David Sulzer, D. James Surmeier, James M. Tepper, Susan Totterdell, Kuei Y. Tseng, Harry B.M. Uylings, Pieter Voorn, Henry J. Waldvogel, Judith R. Walters, Anthony R. West, Thomas Wichmann, Jeffery R. Wickens, Charles J. Wilson, David I.G. Wilson, Philip Winn, Adam Zaidel, and Hui Zhang
- Published
- 2010
30. SGNA Guideline. Guideline for performance of flexible sigmoidoscopy by registered nurses for the purpose of colorectal cancer screening
- Author
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Tina Schaeublin, associates, Michelle Day, Laura Strohmeyer, Cynthia M Friis, Phea Anderson, Michelle R Juan, LeaRae Herron-Rice, Donna Girard, and Mary Anne Malone
- Subjects
Advanced and Specialized Nursing ,Oncology ,Chicago ,medicine.medical_specialty ,Certification ,medicine.diagnostic_test ,business.industry ,Gastroenterology ,Sigmoidoscopy ,Guideline ,Sensitivity and Specificity ,Education, Nursing, Continuing ,Colorectal cancer screening ,Predictive Value of Tests ,Risk Factors ,Internal medicine ,Family medicine ,medicine ,Humans ,Mass Screening ,business ,Colorectal Neoplasms ,Early Detection of Cancer - Published
- 2009
31. Correction for Cahill et al., Kalirin regulates cortical spine morphogenesis and disease-related behavioral phenotypes
- Author
-
Courtney A. Miller, Maria V. Barbolina, Michelle Day, J. David Sweatt, Huzefa Photowala, Craig Weiss, Jelena Radulovic, Zhong Xie, D. James Surmeier, John F. Disterhoft, Michael E. Cahill, and Peter Penzes
- Subjects
Spine (zoology) ,Behavioral phenotypes ,Multidisciplinary ,Morphogenesis ,Disease ,Biology ,Neuroscience ,Corrections - Published
- 2009
32. Kalirin regulates cortical spine morphogenesis and disease-related behavioral phenotypes
- Author
-
Zhong Xie, Courtney A. Miller, John F. Disterhoft, Huzefa Photowala, Michael E. Cahill, Jelena Radulovic, Peter Penzes, D. James Surmeier, Maria V. Barbolina, Craig Weiss, Michelle Day, and J. David Sweatt
- Subjects
Male ,Dendritic spine ,Dendritic Spines ,Dendritic spine morphogenesis ,Hippocampal formation ,Motor Activity ,Synaptic Transmission ,Rats, Sprague-Dawley ,Glutamatergic ,Mice ,Cognition ,Morphogenesis ,Animals ,Guanine Nucleotide Exchange Factors ,Prefrontal cortex ,Maze Learning ,cdc42 GTP-Binding Protein ,Clozapine ,Prepulse inhibition ,Cells, Cultured ,Mice, Knockout ,Multidisciplinary ,Behavior, Animal ,Biological Sciences ,Frontal Lobe ,Rats ,Phenotype ,Cdc42 GTP-Binding Protein ,Synaptic plasticity ,Psychology ,Neuroscience - Abstract
Dendritic spine morphogenesis contributes to brain function, cognition, and behavior, and is altered in psychiatric disorders. Kalirin is a brain-specific guanine-nucleotide exchange factor (GEF) for Rac-like GTPases and is a key regulator of spine morphogenesis. Here, we show that KALRN -knockout mice have specific reductions in cortical, but not hippocampal, Rac1 signaling and spine density, and exhibit reduced cortical glutamatergic transmission. These mice exhibit robust deficits in working memory, sociability, and prepulse inhibition, paralleled by locomotor hyperactivity reversible by clozapine in a kalirin-dependent manner. Several of these deficits are delayed and age-dependent. Our study thus links spine morphogenic signaling with age-dependent, delayed, disease-related phenotypes, including cognitive dysfunction.
- Published
- 2009
33. Striatal Dendritic Adaptations in Parkinson’s Disease Models
- Author
-
Michelle Day and D. James Surmeier
- Subjects
Parkinson's disease ,medicine ,Biology ,medicine.disease ,Medium spiny neuron ,Neuroscience - Published
- 2008
34. Cholinergic modulation of Kir2 channels selectively elevates dendritic excitability in striatopallidal neurons
- Author
-
Weixing Shen, Neil M. Nathanson, Michelle Day, D. James Surmeier, Tatiana Tkatch, Sasha Ulrich, and Xinyong Tian
- Subjects
Nervous system ,Patch-Clamp Techniques ,Reserpine ,Synaptic pruning ,Green Fluorescent Proteins ,Mice, Transgenic ,Striatum ,In Vitro Techniques ,Muscarinic Agonists ,Medium spiny neuron ,Neuroscientist ,Membrane Potentials ,Mice ,Dopamine ,Muscarine ,medicine ,Animals ,Enzyme Inhibitors ,Potassium Channels, Inwardly Rectifying ,Oxidopamine ,Neurons ,Chemistry ,Receptors, Dopamine D2 ,General Neuroscience ,Receptors, Dopamine D1 ,Neurodegeneration ,Receptor, Muscarinic M1 ,Excitatory Postsynaptic Potentials ,Dendrites ,medicine.disease ,Corpus Striatum ,Mice, Inbred C57BL ,medicine.anatomical_structure ,nervous system ,Animals, Newborn ,cardiovascular system ,Neuron ,Neuroscience ,medicine.drug ,Signal Transduction - Abstract
Dopamine-depleting lesions of the striatum that mimic Parkinson's disease induce a profound pruning of spines and glutamatergic synapses in striatopallidal medium spiny neurons, leaving striatonigral medium spiny neurons intact. The mechanisms that underlie this cell type-specific loss of connectivity are poorly understood. The Kir2 K(+) channel is an important determinant of dendritic excitability in these cells. Here we show that opening of these channels is potently reduced by signaling through M1 muscarinic receptors in striatopallidal neurons, but not in striatonigral neurons. This asymmetry could be attributed to differences in the subunit composition of Kir2 channels. Dopamine depletion alters the subunit composition further, rendering Kir2 channels in striatopallidal neurons even more susceptible to modulation. Reduced opening of Kir2 channels enhances dendritic excitability and synaptic integration. This cell type-specific enhancement of dendritic excitability is an essential trigger for synaptic pruning after dopamine depletion, as pruning was prevented by genetic deletion of M1 muscarinic receptors.
- Published
- 2007
35. D1 and D2 dopamine-receptor modulation of striatal glutamatergic signaling in striatal medium spiny neurons
- Author
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Michelle Day, Jun B. Ding, Weixing Shen, Zhongfeng Wang, and D. James Surmeier
- Subjects
Neurons ,Neuronal Plasticity ,Receptors, Dopamine D2 ,General Neuroscience ,Dopamine ,Glutamine ,Receptors, Dopamine D1 ,Striatum ,Biology ,Medium spiny neuron ,Synaptic Transmission ,Corpus Striatum ,Glutamatergic ,Dopamine receptor D1 ,Dopamine receptor ,Dopamine receptor D2 ,Synaptic plasticity ,Neural Pathways ,medicine ,Animals ,Humans ,Neuroscience ,medicine.drug ,Signal Transduction - Abstract
Dopamine shapes a wide variety of psychomotor functions. This is mainly accomplished by modulating cortical and thalamic glutamatergic signals impinging upon principal medium spiny neurons (MSNs) of the striatum. Several lines of evidence suggest that dopamine D1 receptor signaling enhances dendritic excitability and glutamatergic signaling in striatonigral MSNs, whereas D2 receptor signaling exerts the opposite effect in striatopallidal MSNs. The functional antagonism between these two major striatal dopamine receptors extends to the regulation of synaptic plasticity. Recent studies, using transgenic mice in which cells express D1 and D2 receptors, have uncovered unappreciated differences between MSNs that shape glutamatergic signaling and the influence of DA on synaptic plasticity. These studies have also shown that long-term alterations in dopamine signaling produce profound and cell-type-specific reshaping of corticostriatal connectivity and function.
- Published
- 2007
36. Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease
- Author
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Jonas B. Nielsen, Oren Rom, Ida Surakka, Sarah E. Graham, Wei Zhou, Tanmoy Roychowdhury, Lars G. Fritsche, Sarah A. Gagliano Taliun, Carlo Sidore, Yuhao Liu, Maiken E. Gabrielsen, Anne Heidi Skogholt, Brooke Wolford, William Overton, Ying Zhao, Jin Chen, He Zhang, Whitney E. Hornsby, Akua Acheampong, Austen Grooms, Amanda Schaefer, Gregory J. M. Zajac, Luis Villacorta, Jifeng Zhang, Ben Brumpton, Mari Løset, Vivek Rai, Pia R. Lundegaard, Morten S. Olesen, Kent D. Taylor, Nicholette D. Palmer, Yii-Der Chen, Seung H. Choi, Steven A. Lubitz, Patrick T. Ellinor, Kathleen C. Barnes, Michelle Daya, Nicholas Rafaels, Scott T. Weiss, Jessica Lasky-Su, Russell P. Tracy, Ramachandran S. Vasan, L. Adrienne Cupples, Rasika A. Mathias, Lisa R. Yanek, Lewis C. Becker, Patricia A. Peyser, Lawrence F. Bielak, Jennifer A. Smith, Stella Aslibekyan, Bertha A. Hidalgo, Donna K. Arnett, Marguerite R. Irvin, James G. Wilson, Solomon K. Musani, Adolfo Correa, Stephen S. Rich, Xiuqing Guo, Jerome I. Rotter, Barbara A. Konkle, Jill M. Johnsen, Allison E. Ashley-Koch, Marilyn J. Telen, Vivien A. Sheehan, John Blangero, Joanne E. Curran, Juan M. Peralta, Courtney Montgomery, Wayne H-H Sheu, Ren-Hua Chung, Karen Schwander, Seyed M. Nouraie, Victor R. Gordeuk, Yingze Zhang, Charles Kooperberg, Alexander P. Reiner, Rebecca D. Jackson, Eugene R. Bleecker, Deborah A. Meyers, Xingnan Li, Sayantan Das, Ketian Yu, Jonathon LeFaive, Albert Smith, Tom Blackwell, Daniel Taliun, Sebastian Zollner, Lukas Forer, Sebastian Schoenherr, Christian Fuchsberger, Anita Pandit, Matthew Zawistowski, Sachin Kheterpal, Chad M. Brummett, Pradeep Natarajan, David Schlessinger, Seunggeun Lee, Hyun Min Kang, Francesco Cucca, Oddgeir L. Holmen, Bjørn O. Åsvold, Michael Boehnke, Sekar Kathiresan, Goncalo R. Abecasis, Y. Eugene Chen, Cristen J. Willer, and Kristian Hveem
- Subjects
Science - Abstract
Drugs targeting cardiovascular disease (CVD) can have negative consequences for liver function. Here, the authors combine genome wide analyses on 69,479 individuals to identify loss-of-function variants with beneficial effects on CVD-related traits without negative impacts on liver function.
- Published
- 2020
- Full Text
- View/download PDF
37. Selective elimination of glutamatergic synapses on striatopallidal neurons in Parkinson disease models
- Author
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Gordon W. Arbuthnott, Zhuoxin Sun, Ema Ilijic, Michelle Day, Enrico Mugnaini, David L. Wokosin, D. James Surmeier, Cali A. Ingham, Susan R. Sesack, Allan R. Sampson, Jun B. Ding, Andrew F Shering, Ariel Y. Deutch, Zhongfeng Wang, and Xinhai An
- Subjects
Nervous system ,Cerebellum ,Patch-Clamp Techniques ,Calcium Channels, L-Type ,Dendritic Spines ,Glutamine ,Thalamus ,Biology ,Neuroscientist ,Glutamatergic ,Mice ,Organ Culture Techniques ,Neural Pathways ,medicine ,Animals ,Microscopy, Immunoelectron ,Systems neuroscience ,Reverse Transcriptase Polymerase Chain Reaction ,General Neuroscience ,Neurodegeneration ,Parkinson Disease ,medicine.disease ,Corpus Striatum ,nervous system diseases ,Mice, Inbred C57BL ,Disease Models, Animal ,medicine.anatomical_structure ,nervous system ,Synapses ,Neuron ,Neuroscience - Abstract
Parkinson disease is a common neurodegenerative disorder that leads to difficulty in effectively translating thought into action. Although it is known that dopaminergic neurons that innervate the striatum die in Parkinson disease, it is not clear how this loss leads to symptoms. Recent work has implicated striatopallidal medium spiny neurons (MSNs) in this process, but how and precisely why these neurons change is not clear. Using multiphoton imaging, we show that dopamine depletion leads to a rapid and profound loss of spines and glutamatergic synapses on striatopallidal MSNs but not on neighboring striatonigral MSNs. This loss of connectivity is triggered by a new mechanism-dysregulation of intraspine Cav1.3 L-type Ca(2+) channels. The disconnection of striatopallidal neurons from motor command structures is likely to be a key step in the emergence of pathological activity that is responsible for symptoms in Parkinson disease.
- Published
- 2005
38. Whole genome sequence analysis of pulmonary function and COPD in 19,996 multi-ethnic participants
- Author
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Xutong Zhao, Dandi Qiao, Chaojie Yang, Silva Kasela, Wonji Kim, Yanlin Ma, Nick Shrine, Chiara Batini, Tamar Sofer, Sarah A. Gagliano Taliun, Phuwanat Sakornsakolpat, Pallavi P. Balte, Dmitry Prokopenko, Bing Yu, Leslie A. Lange, Josée Dupuis, Brian E. Cade, Jiwon Lee, Sina A. Gharib, Michelle Daya, Cecelia A. Laurie, Ingo Ruczinski, L. Adrienne Cupples, Laura R. Loehr, Traci M. Bartz, Alanna C. Morrison, Bruce M. Psaty, Ramachandran S. Vasan, James G. Wilson, Kent D. Taylor, Peter Durda, W. Craig Johnson, Elaine Cornell, Xiuqing Guo, Yongmei Liu, Russell P. Tracy, Kristin G. Ardlie, François Aguet, David J. VanDenBerg, George J. Papanicolaou, Jerome I. Rotter, Kathleen C. Barnes, Deepti Jain, Deborah A. Nickerson, Donna M. Muzny, Ginger A. Metcalf, Harshavardhan Doddapaneni, Shannon Dugan-Perez, Namrata Gupta, Stacey Gabriel, Stephen S. Rich, George T. O’Connor, Susan Redline, Robert M. Reed, Cathy C. Laurie, Martha L. Daviglus, Liana K. Preudhomme, Kristin M. Burkart, Robert C. Kaplan, Louise V. Wain, Martin D. Tobin, Stephanie J. London, Tuuli Lappalainen, Elizabeth C. Oelsner, Goncalo R. Abecasis, Edwin K. Silverman, R. Graham Barr, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, TOPMed Lung Working Group, Michael H. Cho, and Ani Manichaikul
- Subjects
Science - Abstract
Chronic obstructive pulmonary disease is a leading cause of morbidity and mortality. Here, the authors analyse whole genome sequence data and find new loci associated with lung function and COPD.
- Published
- 2020
- Full Text
- View/download PDF
39. Stimulation of 5-HT(2) receptors in prefrontal pyramidal neurons inhibits Ca(v)1.2 L type Ca(2+) currents via a PLCbeta/IP3/calcineurin signaling cascade
- Author
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Patricia A. Olson, Josef Platzer, Michelle Day, D. James Surmeier, and Joerg Striessnig
- Subjects
Patch-Clamp Techniques ,Calcium Channels, L-Type ,Physiology ,Inositol Phosphates ,Phospholipase C beta ,Gene Expression ,Prefrontal Cortex ,Stimulation ,Calcium Channels, R-Type ,Serotonergic ,Cav1.2 ,Rats, Sprague-Dawley ,Calcium Channels, N-Type ,Receptor, Serotonin, 5-HT2B ,Animals ,Receptor, Serotonin, 5-HT2A ,Patch clamp ,RNA, Messenger ,Prefrontal cortex ,Receptor ,biology ,Voltage-dependent calcium channel ,Chemistry ,General Neuroscience ,Calcineurin ,Pyramidal Cells ,Heterotrimeric GTP-Binding Proteins ,Rats ,Isoenzymes ,Receptors, Serotonin ,Type C Phospholipases ,biology.protein ,GTP-Binding Protein alpha Subunits, Gq-G11 ,Calcium ,Serotonin ,Neuroscience ,Signal Transduction - Abstract
There is growing evidence linking alterations in serotonergic signaling in the prefrontal cortex to the etiology of schizophrenia. Prefrontal pyramidal neurons are richly innervated by serotonergic fibers and express high levels of serotonergic 5-HT2-class receptors. It is unclear, however, how activation of these receptors modulates cellular activity. To help fill this gap, whole cell voltage-clamp and single-cell RT-PCR studies of acutely isolated layer V–VI prefrontal pyramidal neurons were undertaken. The vast majority (>80%) of these neurons had detectable levels of 5-HT2Aor 5-HT2Creceptor mRNA. Bath application of 5-HT2agonists inhibited voltage-dependent Ca2+channel currents. L-type Ca2+channels were a particularly prominent target of this signaling pathway. The L-type channel modulation was blocked by disruption of Gαqsignaling or by inhibition of phospholipase Cβ. Antagonism of intracellular inositol trisphosphate signaling, chelation of intracellular Ca2+, or depletion of intracellular Ca2+stores also blocked this modulation. Inhibition of the Ca2+-dependent phosphatase calcineurin prevented receptor-mediated modulation of L-type currents. Last, the 5-HT2receptor modulation was robustly expressed in neurons from Cav1.3 knockout mice. These findings argue that 5-HT2receptors couple through Gαqproteins to trigger a phospholipase Cβ/inositol trisphosphate signaling cascade resulting in the mobilization of intracellular Ca2+, activation of calcineurin, and inhibition of Cav1.2 L-type Ca2+currents. This modulation and its blockade by atypical neuroleptics could have wide-ranging effects on synaptic integration and long-term gene expression in deep-layer prefrontal pyramidal neurons.
- Published
- 2002
40. Genetic determinants of telomere length from 109,122 ancestrally diverse whole-genome sequences in TOPMed
- Author
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Margaret A. Taub, Matthew P. Conomos, Rebecca Keener, Kruthika R. Iyer, Joshua S. Weinstock, Lisa R. Yanek, John Lane, Tyne W. Miller-Fleming, Jennifer A. Brody, Laura M. Raffield, Caitlin P. McHugh, Deepti Jain, Stephanie M. Gogarten, Cecelia A. Laurie, Ali Keramati, Marios Arvanitis, Albert V. Smith, Benjamin Heavner, Lucas Barwick, Lewis C. Becker, Joshua C. Bis, John Blangero, Eugene R. Bleecker, Esteban G. Burchard, Juan C. Celedón, Yen Pei C. Chang, Brian Custer, Dawood Darbar, Lisa de las Fuentes, Dawn L. DeMeo, Barry I. Freedman, Melanie E. Garrett, Mark T. Gladwin, Susan R. Heckbert, Bertha A. Hidalgo, Marguerite R. Irvin, Talat Islam, W. Craig Johnson, Stefan Kaab, Lenore Launer, Jiwon Lee, Simin Liu, Arden Moscati, Kari E. North, Patricia A. Peyser, Nicholas Rafaels, Christine Seidman, Daniel E. Weeks, Fayun Wen, Marsha M. Wheeler, L. Keoki Williams, Ivana V. Yang, Wei Zhao, Stella Aslibekyan, Paul L. Auer, Donald W. Bowden, Brian E. Cade, Zhanghua Chen, Michael H. Cho, L. Adrienne Cupples, Joanne E. Curran, Michelle Daya, Ranjan Deka, Celeste Eng, Tasha E. Fingerlin, Xiuqing Guo, Lifang Hou, Shih-Jen Hwang, Jill M. Johnsen, Eimear E. Kenny, Albert M. Levin, Chunyu Liu, Ryan L. Minster, Take Naseri, Mehdi Nouraie, Muagututi‘a Sefuiva Reupena, Ester C. Sabino, Jennifer A. Smith, Nicholas L. Smith, Jessica Lasky-Su, James G. Taylor, VI, Marilyn J. Telen, Hemant K. Tiwari, Russell P. Tracy, Marquitta J. White, Yingze Zhang, Kerri L. Wiggins, Scott T. Weiss, Ramachandran S. Vasan, Kent D. Taylor, Moritz F. Sinner, Edwin K. Silverman, M. Benjamin Shoemaker, Wayne H.-H. Sheu, Frank Sciurba, David A. Schwartz, Jerome I. Rotter, Daniel Roden, Susan Redline, Benjamin A. Raby, Bruce M. Psaty, Juan M. Peralta, Nicholette D. Palmer, Sergei Nekhai, Courtney G. Montgomery, Braxton D. Mitchell, Deborah A. Meyers, Stephen T. McGarvey, Angel C.Y. Mak, Ruth J.F. Loos, Rajesh Kumar, Charles Kooperberg, Barbara A. Konkle, Shannon Kelly, Sharon L.R. Kardia, Robert Kaplan, Jiang He, Hongsheng Gui, Frank D. Gilliland, Bruce D. Gelb, Myriam Fornage, Patrick T. Ellinor, Mariza de Andrade, Adolfo Correa, Yii-Der Ida Chen, Eric Boerwinkle, Kathleen C. Barnes, Allison E. Ashley-Koch, Donna K. Arnett, Christine Albert, Cathy C. Laurie, Goncalo Abecasis, Deborah A. Nickerson, James G. Wilson, Stephen S. Rich, Daniel Levy, Ingo Ruczinski, Abraham Aviv, Thomas W. Blackwell, Timothy Thornton, Jeff O’Connell, Nancy J. Cox, James A. Perry, Mary Armanios, Alexis Battle, Nathan Pankratz, Alexander P. Reiner, and Rasika A. Mathias
- Subjects
telomeres ,telomere length genetics ,trans-population genome-wide association study ,Genetics ,QH426-470 ,Internal medicine ,RC31-1245 - Abstract
Summary: Genetic studies on telomere length are important for understanding age-related diseases. Prior GWASs for leukocyte TL have been limited to European and Asian populations. Here, we report the first sequencing-based association study for TL across ancestrally diverse individuals (European, African, Asian, and Hispanic/Latino) from the NHLBI Trans-Omics for Precision Medicine (TOPMed) program. We used whole-genome sequencing (WGS) of whole blood for variant genotype calling and the bioinformatic estimation of telomere length in n = 109,122 individuals. We identified 59 sentinel variants (p < 5 × 10−9) in 36 loci associated with telomere length, including 20 newly associated loci (13 were replicated in external datasets). There was little evidence of effect size heterogeneity across populations. Fine-mapping at OBFC1 indicated that the independent signals colocalized with cell-type-specific eQTLs for OBFC1 (STN1). Using a multi-variant gene-based approach, we identified two genes newly implicated in telomere length, DCLRE1B (SNM1B) and PARN. In PheWAS, we demonstrated that our TL polygenic trait scores (PTSs) were associated with an increased risk of cancer-related phenotypes.
- Published
- 2022
- Full Text
- View/download PDF
41. Expression of Normal and Mutant Huntingtin in the Developing Brain
- Author
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Cordula Schwarz, Marian DiFiglia, John B. Penney, Neil Aronin, Anne B. Young, Ami N. Sheth, Jeffrey A. Golden, Michelle Day, Johnny Kim, Ellen Sapp, and Pradeep G. Bhide
- Subjects
congenital, hereditary, and neonatal diseases and abnormalities ,Huntingtin ,Population ,Blotting, Western ,Mice, Inbred Strains ,Nerve Tissue Proteins ,Striatum ,Biology ,Mice ,Huntington's disease ,Reference Values ,mental disorders ,medicine ,Animals ,Humans ,education ,Basal forebrain ,education.field_of_study ,Huntingtin Protein ,General Neuroscience ,Neurogenesis ,Brain ,Nuclear Proteins ,Human brain ,Articles ,medicine.disease ,Immunohistochemistry ,medicine.anatomical_structure ,Huntington Disease ,nervous system ,Mutation ,Brainstem ,Neuroscience - Abstract
Huntington’s disease (HD) is caused by a genetic mutation that results in a polyglutamine expansion in huntingtin. The time course of neuronal loss in the HD striatum and other affected brain regions before the onset of symptoms is unknown. To determine the potential influence of huntingtin on brain development, we examined its expression in the developing mouse and in human control and HD brain. By Western blot, huntingtin was detected throughout the adult mouse brain and at all stages of embryonic and postnatal brain development. The protein increased significantly between postnatal day 7 (P7) and P15, which marks a period of active neuronal differentiation and enhanced sensitivity to excitotoxic injury in the rodent striatum. Immunoreactivity was found in neurons throughout the brain and localized mostly to the somatodendritic cytoplasm and to axons in fiber bundles. Staining was variable in different groups of neurons and within the same cell population. In developing brain, huntingtin was limited primarily to neuronal perikarya. Increased immunoreactivity in large neurons followed the gradient of neurogenesis and appeared in the basal forebrain and brainstem by embryonic days 15–17, in regions of cortex by P0–P1, and in the striatum by P7. In human brain at midgestation (19–21 weeks), huntingtin was detected in all regions. The brain of a 10-week-old infant with the expanded HD allele expressed a higher molecular weight mutant form of huntingtin at levels comparable to those of the wild-type protein. Thus, mutant huntingtin is expressed before neuronal maturation is complete. Results suggest that huntingtin has an important constitutive role in neurons during brain development, that heterogeneity in neuronal expression of the protein is developmentally regulated, and that the intraneuronal distribution of huntingtin increases in parallel with neuronal maturation. The presence of mutant huntingtin in the immature HD brain raises the possibility that neurons may be affected during brain development and possibly in the postnatal period when vulnerability to excitotoxic injury is at its peak.
- Published
- 1996
42. Association study in African-admixed populations across the Americas recapitulates asthma risk loci in non-African populations
- Author
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Michelle Daya, Nicholas Rafaels, Tonya M. Brunetti, Sameer Chavan, Albert M. Levin, Aniket Shetty, Christopher R. Gignoux, Meher Preethi Boorgula, Genevieve Wojcik, Monica Campbell, Candelaria Vergara, Dara G. Torgerson, Victor E. Ortega, Ayo Doumatey, Henry Richard Johnston, Nathalie Acevedo, Maria Ilma Araujo, Pedro C. Avila, Gillian Belbin, Eugene Bleecker, Carlos Bustamante, Luis Caraballo, Alvaro Cruz, Georgia M. Dunston, Celeste Eng, Mezbah U. Faruque, Trevor S. Ferguson, Camila Figueiredo, Jean G. Ford, Weiniu Gan, Pierre-Antoine Gourraud, Nadia N. Hansel, Ryan D. Hernandez, Edwin Francisco Herrera-Paz, Silvia Jiménez, Eimear E. Kenny, Jennifer Knight-Madden, Rajesh Kumar, Leslie A. Lange, Ethan M. Lange, Antoine Lizee, Pissamai Maul, Trevor Maul, Alvaro Mayorga, Deborah Meyers, Dan L. Nicolae, Timothy D. O’Connor, Ricardo Riccio Oliveira, Christopher O. Olopade, Olufunmilayo Olopade, Zhaohui S. Qin, Charles Rotimi, Nicolas Vince, Harold Watson, Rainford J. Wilks, James G. Wilson, Steven Salzberg, Carole Ober, Esteban G. Burchard, L. Keoki Williams, Terri H. Beaty, Margaret A. Taub, Ingo Ruczinski, Rasika A. Mathias, Kathleen C. Barnes, and CAAPA
- Subjects
Science - Abstract
The burden of asthma varies between ancestries, but GWAS have so far focused on mainly European ancestry populations. Here, Daya et al. perform GWAS for asthma in 14,654 individuals of African ancestry and, besides confirming previously known loci, identify two potentially African ancestry-specific loci.
- Published
- 2019
- Full Text
- View/download PDF
43. Unusual Gastrointestinal Foreign Bodies: Report of 18 Cases
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Michael Golioto, Michelle Day, and Tarun Rustagi
- Subjects
medicine.medical_specialty ,Hepatology ,business.industry ,General surgery ,Gastroenterology ,Medicine ,business ,Foreign Bodies - Published
- 2010
44. Zika Virus Congenital Syndrome and MTOR gene variants: insights from a family of dizygotic twins
- Author
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Luciana Reboredo de O. da Silva, Pablo Oliveira, Silvia Sardi, Gubio Soares, Antônio Carlos Bandeira, Ryan dos Santos Costa, Nicholas Rafaels, Monica Campbell, Tonya Brunetti, Kristy Crooks, Michelle Daya, Maria Glória Teixeira, Valdirene Leão Carneiro, Kathleen Barnes, and Camila A. Figueiredo
- Subjects
Zika virus ,mTOR ,Whole-exome sequencing ,Twins ,Polymorphisms ,Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Abstract
Congenital Zika virus syndrome (CZS) is associated with damage to neural progenitor cells by ZIKA virus infection. There are no accurate statistics on the percentage of pregnant mothers who have had babies affected by the syndrome. Few cases of discordant twins have been described in the literature and, therefore, we hypothesize that the genetic background of the progeny and/or mother may play a role in the fate of the syndrome. We performed a complete exome sequencing in a set of dizygotic individuals and their parents. After that, we selected discordant variants on the MTOR gene between the affected and unaffected twin and we observed a mutation (rs2295079), placed in a region restricted to proximal 5′-UTR, as a strong possible causal variant. In addition, in most brain tissues (including fetal brain) evaluated for expression quantitative trait loci (eQTL), this locus is strongly correlated with post-translational modifications of histones (promoter and enhancer marks) and hypersensitivity to DNAse I (open chromatin mark). Taken together, our data suggest that changes in the MTOR gene may be related to CZS. Additional functional studies should be carried out to prove how and why a MTOR mutation can predispose the fetus to the syndrome.
- Published
- 2021
- Full Text
- View/download PDF
45. Nursing Considerations for Bariatric Surgery
- Author
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Michelle Day
- Subjects
Advanced and Specialized Nursing ,medicine.medical_specialty ,business.industry ,General surgery ,Gastroenterology ,Medicine ,business - Published
- 2006
46. clustifyr: an R package for automated single-cell RNA sequencing cluster classification [version 2; peer review: 2 approved]
- Author
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Rui Fu, Austin E. Gillen, Ryan M. Sheridan, Chengzhe Tian, Michelle Daya, Yue Hao, Jay R. Hesselberth, and Kent A. Riemondy
- Subjects
Medicine ,Science - Abstract
Assignment of cell types from single-cell RNA sequencing (scRNA-seq) data remains a time-consuming and error-prone process. Current packages for identity assignment use limited types of reference data and often have rigid data structure requirements. We developed the clustifyr R package to leverage several external data types, including gene expression profiles to assign likely cell types using data from scRNA-seq, bulk RNA-seq, microarray expression data, or signature gene lists. We benchmark various parameters of a correlation-based approach and implement gene list enrichment methods. clustifyr is a lightweight and effective cell-type assignment tool developed for compatibility with various scRNA-seq analysis workflows. clustifyr is publicly available at https://github.com/rnabioco/clustifyr
- Published
- 2020
- Full Text
- View/download PDF
47. Use of >100,000 NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium whole genome sequences improves imputation quality and detection of rare variant associations in admixed African and Hispanic/Latino populations.
- Author
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Madeline H Kowalski, Huijun Qian, Ziyi Hou, Jonathan D Rosen, Amanda L Tapia, Yue Shan, Deepti Jain, Maria Argos, Donna K Arnett, Christy Avery, Kathleen C Barnes, Lewis C Becker, Stephanie A Bien, Joshua C Bis, John Blangero, Eric Boerwinkle, Donald W Bowden, Steve Buyske, Jianwen Cai, Michael H Cho, Seung Hoan Choi, Hélène Choquet, L Adrienne Cupples, Mary Cushman, Michelle Daya, Paul S de Vries, Patrick T Ellinor, Nauder Faraday, Myriam Fornage, Stacey Gabriel, Santhi K Ganesh, Misa Graff, Namrata Gupta, Jiang He, Susan R Heckbert, Bertha Hidalgo, Chani J Hodonsky, Marguerite R Irvin, Andrew D Johnson, Eric Jorgenson, Robert Kaplan, Sharon L R Kardia, Tanika N Kelly, Charles Kooperberg, Jessica A Lasky-Su, Ruth J F Loos, Steven A Lubitz, Rasika A Mathias, Caitlin P McHugh, Courtney Montgomery, Jee-Young Moon, Alanna C Morrison, Nicholette D Palmer, Nathan Pankratz, George J Papanicolaou, Juan M Peralta, Patricia A Peyser, Stephen S Rich, Jerome I Rotter, Edwin K Silverman, Jennifer A Smith, Nicholas L Smith, Kent D Taylor, Timothy A Thornton, Hemant K Tiwari, Russell P Tracy, Tao Wang, Scott T Weiss, Lu-Chen Weng, Kerri L Wiggins, James G Wilson, Lisa R Yanek, Sebastian Zöllner, Kari E North, Paul L Auer, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, TOPMed Hematology & Hemostasis Working Group, Laura M Raffield, Alexander P Reiner, and Yun Li
- Subjects
Genetics ,QH426-470 - Abstract
Most genome-wide association and fine-mapping studies to date have been conducted in individuals of European descent, and genetic studies of populations of Hispanic/Latino and African ancestry are limited. In addition, these populations have more complex linkage disequilibrium structure. In order to better define the genetic architecture of these understudied populations, we leveraged >100,000 phased sequences available from deep-coverage whole genome sequencing through the multi-ethnic NHLBI Trans-Omics for Precision Medicine (TOPMed) program to impute genotypes into admixed African and Hispanic/Latino samples with genome-wide genotyping array data. We demonstrated that using TOPMed sequencing data as the imputation reference panel improves genotype imputation quality in these populations, which subsequently enhanced gene-mapping power for complex traits. For rare variants with minor allele frequency (MAF) < 0.5%, we observed a 2.3- to 6.1-fold increase in the number of well-imputed variants, with 11-34% improvement in average imputation quality, compared to the state-of-the-art 1000 Genomes Project Phase 3 and Haplotype Reference Consortium reference panels. Impressively, even for extremely rare variants with minor allele count 86%. Subsequent association analyses of TOPMed reference panel-imputed genotype data with hematological traits (hemoglobin (HGB), hematocrit (HCT), and white blood cell count (WBC)) in ~21,600 African-ancestry and ~21,700 Hispanic/Latino individuals identified associations with two rare variants in the HBB gene (rs33930165 with higher WBC [p = 8.8x10-15] in African populations, rs11549407 with lower HGB [p = 1.5x10-12] and HCT [p = 8.8x10-10] in Hispanics/Latinos). By comparison, neither variant would have been genome-wide significant if either 1000 Genomes Project Phase 3 or Haplotype Reference Consortium reference panels had been used for imputation. Our findings highlight the utility of the TOPMed imputation reference panel for identification of novel rare variant associations not previously detected in similarly sized genome-wide studies of under-represented African and Hispanic/Latino populations.
- Published
- 2019
- Full Text
- View/download PDF
48. Author Correction: Association study in African-admixed populations across the Americas recapitulates asthma risk loci in non-African populations
- Author
-
Michelle Daya, Nicholas Rafaels, Tonya M. Brunetti, Sameer Chavan, Albert M. Levin, Aniket Shetty, Christopher R. Gignoux, Meher Preethi Boorgula, Genevieve Wojcik, Monica Campbell, Candelaria Vergara, Dara G. Torgerson, Victor E. Ortega, Ayo Doumatey, Henry Richard Johnston, Nathalie Acevedo, Maria Ilma Araujo, Pedro C. Avila, Gillian Belbin, Eugene Bleecker, Carlos Bustamante, Luis Caraballo, Alvaro Cruz, Georgia M. Dunston, Celeste Eng, Mezbah U. Faruque, Trevor S. Ferguson, Camila Figueiredo, Jean G. Ford, Weiniu Gan, Pierre-Antoine Gourraud, Nadia N. Hansel, Ryan D. Hernandez, Edwin Francisco Herrera-Paz, Silvia Jiménez, Eimear E. Kenny, Jennifer Knight-Madden, Rajesh Kumar, Leslie A. Lange, Ethan M. Lange, Antoine Lizee, Pissamai Maul, Trevor Maul, Alvaro Mayorga, Deborah Meyers, Dan L. Nicolae, Timothy D. O’Connor, Ricardo Riccio Oliveira, Christopher O. Olopade, Olufunmilayo Olopade, Zhaohui S. Qin, Charles Rotimi, Nicolas Vince, Harold Watson, Rainford J. Wilks, James G. Wilson, Steven Salzberg, Carole Ober, Esteban G. Burchard, L. Keoki Williams, Terri H. Beaty, Margaret A. Taub, Ingo Ruczinski, Rasika A. Mathias, Kathleen C. Barnes, and CAAPA
- Subjects
Science - Abstract
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
- Published
- 2019
- Full Text
- View/download PDF
49. Stimulation of 5-HT(2) receptors in prefrontal pyramidal neurons inhibits Ca(v)1.2 L type Ca(2+) currents via a PLCbeta/IP3/calcineurin signaling cascade.
- Author
-
Michelle, Day, A, Olson Patricia, Josef, Platzer, Joerg, Striessnig, and James, Surmeier D
- Abstract
There is growing evidence linking alterations in serotonergic signaling in the prefrontal cortex to the etiology of schizophrenia. Prefrontal pyramidal neurons are richly innervated by serotonergic fibers and express high levels of serotonergic 5-HT(2)-class receptors. It is unclear, however, how activation of these receptors modulates cellular activity. To help fill this gap, whole cell voltage-clamp and single-cell RT-PCR studies of acutely isolated layer V-VI prefrontal pyramidal neurons were undertaken. The vast majority (>80%) of these neurons had detectable levels of 5-HT(2A) or 5-HT(2C) receptor mRNA. Bath application of 5-HT(2) agonists inhibited voltage-dependent Ca(2+) channel currents. L-type Ca(2+) channels were a particularly prominent target of this signaling pathway. The L-type channel modulation was blocked by disruption of G(alphaq) signaling or by inhibition of phospholipase Cbeta. Antagonism of intracellular inositol trisphosphate signaling, chelation of intracellular Ca(2+), or depletion of intracellular Ca(2+) stores also blocked this modulation. Inhibition of the Ca(2+)-dependent phosphatase calcineurin prevented receptor-mediated modulation of L-type currents. Last, the 5-HT(2) receptor modulation was robustly expressed in neurons from Ca(v)1.3 knockout mice. These findings argue that 5-HT(2) receptors couple through G(alphaq) proteins to trigger a phospholipase Cbeta/inositol trisphosphate signaling cascade resulting in the mobilization of intracellular Ca(2+), activation of calcineurin, and inhibition of Ca(v)1.2 L-type Ca(2+) currents. This modulation and its blockade by atypical neuroleptics could have wide-ranging effects on synaptic integration and long-term gene expression in deep-layer prefrontal pyramidal neurons.
- Published
- 2002
50. Impaired TrkB Receptor Signaling Underlies Corticostriatal Dysfunction in Huntington’s Disease
- Author
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D. James Surmeier, C. Savio Chan, Jayms D. Peterson, Michael G. Kaplitt, Geraldine J. Kress, Zhong Xie, Mihaela Stavarache, Marc Flajolet, Jim Rosinski, Joshua L. Plotkin, Tracy S. Gertler, Michelle Day, Jyothisri Kondapalli, Igor Rafalovich, and Paul Greengard
- Subjects
medicine.medical_specialty ,Choreiform movement ,Neuroscience(all) ,Mice, Transgenic ,Striatum ,Tropomyosin receptor kinase B ,Biology ,Article ,Mice ,Organ Culture Techniques ,Huntington's disease ,Neurotrophic factors ,Internal medicine ,medicine ,Low-affinity nerve growth factor receptor ,Animals ,Receptor, trkB ,Gene Knock-In Techniques ,Cerebral Cortex ,General Neuroscience ,Long-term potentiation ,medicine.disease ,Corpus Striatum ,Mice, Inbred C57BL ,Disease Models, Animal ,Endocrinology ,Huntington Disease ,nervous system ,Signal transduction ,Neuroscience ,Signal Transduction - Abstract
SUMMARY Huntington’s disease (HD) is an autosomal dominant neurodegenerative disorder. The debilitating choreic movements that plague HD patients have been attributed to striatal degeneration induced by the loss of cortically supplied brain-derived neurotrophic factor (BDNF). Here, we show that in mouse models of early symptomatic HD, BDNF delivery to the striatum and its activation of tyrosine-related kinase B (TrkB) receptors were normal. However, in striatal neurons responsible for movement suppression, TrkB receptors failed to properly engage postsynaptic signaling mechanisms controlling the induction of potentiation at corticostriatal synapses. Plasticity was rescued by inhibiting p75 neurotrophin receptor (p75NTR) signaling or its downstream target phosphatase-and-tensin-homolog-deletedon-chromosome-10 (PTEN). Thus, corticostriatal synaptic dysfunction early in HD is attributable to a correctable defect in the response to BDNF, not its delivery.
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