108 results on '"Melotte V"'
Search Results
2. The health effect of probiotics on high-fat diet-induced cognitive impairment, depression and anxiety: A cross-species systematic review
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Lof, J., Smits, K., Melotte, V., and Kuil, L.E.
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- 2022
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3. ATP5PO levels regulate enteric nervous system development in zebrafish, linking Hirschsprung disease to Down Syndrome
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Kuil, L. E., Chauhan, R. K., de Graaf, B. M., Cheng, W. W., Kakiailatu, N. J.M., Lasabuda, R., Verhaeghe, C., Windster, J. D., Schriemer, D., Azmani, Z., Brooks, A. S., Edie, S., Reeves, R. H., Eggen, B. J.L., Shepherd, I. T., Burns, A. J., Hofstra, R. M.W., Melotte, V., Brosens, E., Alves, M. M., Kuil, L. E., Chauhan, R. K., de Graaf, B. M., Cheng, W. W., Kakiailatu, N. J.M., Lasabuda, R., Verhaeghe, C., Windster, J. D., Schriemer, D., Azmani, Z., Brooks, A. S., Edie, S., Reeves, R. H., Eggen, B. J.L., Shepherd, I. T., Burns, A. J., Hofstra, R. M.W., Melotte, V., Brosens, E., and Alves, M. M.
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Hirschsprung disease (HSCR) is a complex genetic disorder characterized by the absence of enteric nervous system (ENS) in the distal region of the intestine. Down Syndrome (DS) patients have a >50-fold higher risk of developing HSCR than the general population, suggesting that overexpression of human chromosome 21 (Hsa21) genes contribute to HSCR etiology. However, identification of responsible genes remains challenging. Here, we describe a genetic screening of potential candidate genes located on Hsa21, using the zebrafish. Candidate genes were located in the DS-HSCR susceptibility region, expressed in the human intestine, were known potential biomarkers for DS prenatal diagnosis, and were present in the zebrafish genome. With this approach, four genes were selected: RCAN1, ITSN1, ATP5PO and SUMO3. However, only overexpression of ATP5PO, coding for a component of the mitochondrial ATPase, led to significant reduction of ENS cells. Paradoxically, in vitro studies showed that overexpression of ATP5PO led to a reduction of ATP5PO protein levels. Impaired neuronal differentiation and reduced mitochondrial ATP production, were also detected in vitro, after overexpression of ATP5PO in a neuroblastoma cell line. Finally, epistasis was observed between ATP5PO and ret, the most important HSCR gene. Taken together, our results identify ATP5PO as the gene responsible for the increased risk of HSCR in DS patients in particular if RET variants are also present, and show that a balanced expression of ATP5PO is required for normal ENS development.
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- 2024
4. ATP5PO levels regulate enteric nervous system development in zebrafish, linking Hirschsprung disease to Down Syndrome
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Kuil, L.E., primary, Chauhan, R.K., additional, de Graaf, B.M., additional, Cheng, W.W., additional, Kakiailatu, N.J.M., additional, Lasabuda, R., additional, Verhaeghe, C., additional, Windster, J.D., additional, Schriemer, D., additional, Azmani, Z., additional, Brooks, A.S., additional, Edie, S., additional, Reeves, R.H., additional, Eggen, B.J.L., additional, Shepherd, I.T., additional, Burns, A.J., additional, Hofstra, R.M.W., additional, Melotte, V., additional, Brosens, E., additional, and Alves, M.M., additional
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- 2023
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5. Epstein-Barr virus and mismatch repair deficiency status differ between oesophageal and gastric cancer: A large multi-centre study
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Hewitt, L.C., Inam, I.Z., Saito, Y., Yoshikawa, T., Quaas, A., Hoelscher, A., Bollschweiler, E., Fazzi, G.E., Melotte, V., Langley, R.E., Nankivell, M., Cunningham, D., Allum, W., Hutchins, G.G., and Grabsch, H.I.
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- 2018
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6. Chorioamnionitis induces enteric nervous system injury: effects of timing and inflammation in the ovine fetus
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Heymans, C., de Lange, I. H., Lenaerts, K., Kessels, L. C. G. A., Hadfoune, M., Rademakers, G., Melotte, V., Boesmans, W., Kramer, B. W., Jobe, A. H., Saito, M., Kemp, M. W., van Gemert, W. G., and Wolfs, T. G. A. M.
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- 2020
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7. A simplified checklist for the visual inspection of finished pharmaceutical products: a way to empower frontline health workers in the fight against poor-quality medicines
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Schiavetti, B., Wynendaele, E., Melotte, V., Van der Elst, J., De Spiegeleer, B., and Ravinetto, R.
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- 2020
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8. NDRG4, an early detection marker for colorectal cancer, is specifically expressed in enteric neurons
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Vaes, N., Lentjes, M. H. F. M., Gijbels, M. J., Rademakers, G., Daenen, K. L., Boesmans, W., Wouters, K. A. D., Geuzens, A., Qu, X., Steinbusch, H. P. J., Rutten, B. P. F., Baldwin, S. H., Sharkey, K. A., Hofstra, R. M. W., van Engeland, M., Vanden Berghe, P., and Melotte, V.
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- 2017
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9. Unbiased intestinal single cell transcriptomics reveals previously uncharacterized enteric nervous system populations in larval zebrafish
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Kuil, L.E., primary, Kakiailatu, N., additional, Windster, J.D., additional, Bindels, E., additional, Zink, J.T.M., additional, van der Zee, G., additional, Hofstra, R.M.W., additional, Shepherd, I.T., additional, Melotte, V., additional, and Alves, M.M., additional
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- 2022
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10. The health effect of probiotics on high-fat diet-induced cognitive impairment, depression and anxiety:A cross-species systematic review
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Lof, J., Smits, K., Melotte, V., Kuil, L. E., Lof, J., Smits, K., Melotte, V., and Kuil, L. E.
- Abstract
Obesity is a complex disease with many co-morbidities, including impaired cognitive functions. Obese individuals often contain an aberrant microbiota. Via the microbiota-gut-brain axis, the altered microbiota composition can affect cognition or induce anxiety- or depressive-like behavior. Probiotics have been shown to alleviate both obesity- and neurobehavioral disorder-related symptoms. Here, we evaluated previously published results on the effectiveness of probiotic intervention in alleviating obesity- or high-fat diet (HFD)-related cognitive impairment, depression and anxiety. A systematic search was performed in PubMed, Embase, and Google Scholar until June 2021 to identify relevant articles. Seventeen studies were included: one human and sixteen animal studies. Overall, the findings support the beneficial health effect of probiotics on HFD-induced cognitive impairment and anxiety. However, the results suggest that multi-strain probiotic treatments should be used with caution, especially in the absence of HFD-induced impairment. Future studies should overcome the large variation in study design and high risk of bias found in the current evidence. Nevertheless, probiotic treatment, in particular using the Lactobacillus genus, seems promising.
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- 2022
11. Unbiased Intestinal Single Cell Transcriptomics Reveals Previously Uncharacterized Enteric Nervous System Populations in Larval Zebrafish
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Kuil, L. E., primary, Kakiailatu, N., additional, Windster, J.D., additional, Bindels, Eric, additional, Zink, J.T.M., additional, van der Zee, G., additional, Hofstra, R.M.W., additional, Shepherd, I.T., additional, Melotte, V., additional, and Alves, M.M., additional
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- 2022
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12. Diagnostic DNA Methylation Biomarkers for Renal Cell Carcinoma: A Systematic Review
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Lommen, K., Vaes, N., Aarts, M.J., Roermund, J.G.H. van, Schouten, L.J., Oosterwijk, E., Melotte, V., Tjan-Heijnen, V.C., Engeland, M. van, Smits, K.M., Lommen, K., Vaes, N., Aarts, M.J., Roermund, J.G.H. van, Schouten, L.J., Oosterwijk, E., Melotte, V., Tjan-Heijnen, V.C., Engeland, M. van, and Smits, K.M.
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Item does not contain fulltext, CONTEXT: The 5-yr survival of early-stage renal cell carcinoma (RCC) is approximately 93%, but once metastasised, the 5-yr survival plummets to 12%, indicating that early RCC detection is crucial to improvement in survival. DNA methylation biomarkers have been suggested to be of potential diagnostic value; however, their current state of clinical translation is unclear and a comprehensive overview is lacking. OBJECTIVE: To systematically review and summarise all literature regarding diagnostic DNA methylation biomarkers for RCC. EVIDENCE ACQUISITION: We performed a systematic literature review of PubMed, EMBASE, Medline, and Google Scholar up to January 2019, according to the Preferred Reporting Items for Systematic Review and Meta-Analysis of Diagnostic Test Accuracy Studies (PRISMA-DTA) guidelines. Included studies were scored according to the Standards for Reporting of Diagnostic Accuracy Studies (STARD) criteria. Forest plots were generated to summarise diagnostic performance of all biomarkers. Level of evidence (LoE) and potential risk of bias were determined for all included studies. EVIDENCE SYNTHESIS: After selection, 19 articles reporting on 44 diagnostic DNA methylation biomarkers and 11 multimarker panels were included; however, only 15 biomarkers were independently validated. STARD scores varied from 4 to 13 out of 23 points, with a median of 10 points. Large variation in subgroups, methods, and primer locations was observed. None of the reported biomarkers exceeded LoE III, and the majority of studies reported inadequately. CONCLUSIONS: None of the reported biomarkers exceeded LoE III, indicating their limited clinical utility. Moreover, study reproducibility and further development of these RCC biomarkers are greatly hampered by inadequate reporting. PATIENT SUMMARY: In this report, we reviewed whether specific biomarkers could be used to diagnose the most common form of kidney cancer. We conclude that due to limited evidence and reporting inconsistenc
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- 2021
13. The emerging role of nerves and glia in colorectal cancer
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Schonkeren, S.L. (Simone L.), Thijssen, M.S. (Meike S.), Vaes, N. (Nathalie), Boesmans, W. (Werend), Melotte, V. (Veerle), Schonkeren, S.L. (Simone L.), Thijssen, M.S. (Meike S.), Vaes, N. (Nathalie), Boesmans, W. (Werend), and Melotte, V. (Veerle)
- Abstract
The role of the nervous system as a contributor in the tumor microenvironment has been recognized in different cancer types, including colorectal cancer (CRC). The gastrointestinal tract is a highly innervated organ system, which is not only innervated by the autonomic nervous system, but also contains an extensive nervous system of its own; the enteric nervous system (ENS). The ENS is important for gut function and homeostasis by regulating processes such as fluid absorption, blood flow, and gut motility. Dysfunction of the ENS has been linked with multiple gastrointestinal d
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- 2021
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14. Histological intratumoral heterogeneity in pretreatment esophageal cancer biopsies predicts survival benefit from neoadjuvant chemotherapy: results from the UK MRC OE02 trial
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Davarzani, N. (Naser), Hewitt, L.C. (Lindsay C.), Hale, M.D. (Matthew D.), Melotte, V. (Veerle), Nankivell, M. (Matthew), Hutchins, G.G.A. (Gordon G A), Cunningham, D. (David), Allum, W. (William), Langley, S. (Sarah), Jolani, S. (Shahab), Grabsch, H. (Heike), Davarzani, N. (Naser), Hewitt, L.C. (Lindsay C.), Hale, M.D. (Matthew D.), Melotte, V. (Veerle), Nankivell, M. (Matthew), Hutchins, G.G.A. (Gordon G A), Cunningham, D. (David), Allum, W. (William), Langley, S. (Sarah), Jolani, S. (Shahab), and Grabsch, H. (Heike)
- Abstract
Despite the use of multimodal treatment, survival of esophageal cancer (EC) patients remains poor. One proposed explanation for the relatively poor response to cytotoxic chemotherapy is intratumor heterogeneity. The aim was to establish a statistical model to objectively measure intratumor heterogeneity of the proportion of tumor (IHPoT) and to use this newly developed method to measure IHPoT in the pretreatment biopsies from from EC patients recruited to the OE02 trial. A statistical mixed effect model (
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- 2020
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15. Corrigendum: Chronic Intra-Uterine Ureaplasma parvum infection induces injury of the enteric Nervous System in Ovine Fetuses
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Heymans, C., de Lange, I. H., Hütten, M.C., Lenaerts, K., de Ruijter, N.J.E., Kessels, L.C.G.A., Rademakers, G., Melotte, V., Boesmans, W., Saito, M., Usuda, H., Stock, S.J., Spiller, O.B., Beeton, M.L., Payne, M.S., Kramer, B.W., Newnham, J.P., Jobe, A.H., Kemp, M.W., van Gemert, W.G., Wolfs, T.G.A.M., Heymans, C., de Lange, I. H., Hütten, M.C., Lenaerts, K., de Ruijter, N.J.E., Kessels, L.C.G.A., Rademakers, G., Melotte, V., Boesmans, W., Saito, M., Usuda, H., Stock, S.J., Spiller, O.B., Beeton, M.L., Payne, M.S., Kramer, B.W., Newnham, J.P., Jobe, A.H., Kemp, M.W., van Gemert, W.G., and Wolfs, T.G.A.M.
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Michael L. Beeton was not included as an author in the published article. The corrected Author Contributions Statement appears below.
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- 2020
16. Multitarget Stool DNA Test Performance in an Average-Risk Colorectal Cancer Screening Population
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Bosch, L.J.W. (Linda), Melotte, V. (Veerle), Mongera, S. (S.), Daenen, K.L.J. (K. L.J.), Coupé, V.M.H. (Veerle), Van Turenhout, S.T. (Sietze T.), Stoop, E. (Esther), Wijkerslooth, T.R. (Thomas) de, Mulder, C.J.J. (Chris), Rausch, C. (C.), Kuipers, E.J. (Ernst), Dekker, E. (Evelien), Domanico, M.J. (M. J.), Lidgard, G.P. (G. P.), Berger, B.M. (B. M.), Engeland, M. (Manon) van, Carvalho, B. (Beatriz), Meijer, G.A., Bosch, L.J.W. (Linda), Melotte, V. (Veerle), Mongera, S. (S.), Daenen, K.L.J. (K. L.J.), Coupé, V.M.H. (Veerle), Van Turenhout, S.T. (Sietze T.), Stoop, E. (Esther), Wijkerslooth, T.R. (Thomas) de, Mulder, C.J.J. (Chris), Rausch, C. (C.), Kuipers, E.J. (Ernst), Dekker, E. (Evelien), Domanico, M.J. (M. J.), Lidgard, G.P. (G. P.), Berger, B.M. (B. M.), Engeland, M. (Manon) van, Carvalho, B. (Beatriz), and Meijer, G.A.
- Abstract
INTRODUCTION: We set out to evaluate the performance of a multitarget stool DNA (MT-sDNA) in an average-risk colonoscopy-controlled colorectal cancer (CRC) screening population. MT-sDNA stool test results were evaluated against fecal immunochemical test (FIT) results for the detection of different lesions, including molecularly defined high-risk adenomas and several other tumor characteristics. METHODS: Whole stool samples (n = 1,047) were prospectively collected and subjected to an MT-sDNA test, which tests for KRAS mutations, NDRG4 and BMP3 promoter methylation, and hemoglobin. Results for detecting CRC (n = 7), advanced precancerous lesions (advanced adenoma [AA] and advanced serrated polyps; n = 119), and non-AAs (n = 191) were compared with those of FIT alone (thresholds of 50, 75, and 100 hemoglobin/mL). AAs with high risk of progression were defined by the presence of specific DNA copy number events as measured by low-pass whole genome sequencing. RESULTS: The MT-sDNA test was more sensitive than FIT alone in detecting advanced precancerous lesions (46% (55/119) vs 27% (32/119), respectively, P < 0.001). Specificities among individuals with nonadvanced or negative findings (controls) were 89% (791/888) and 93% (828/888) for MT-sDNA and FIT testing, respectively. A positive MT-sDNA test was associated with multiple lesions (P = 0.005), larger lesions (P = 0.03), and lesions with tubulovillous architecture (P = 0.04). The sensitivity of the MT-sDNA test or FIT in detecting individuals with high-risk AAs (n = 19) from individuals with low-risk AAs (n = 52) was not significantly different. DISCUSSION: In an average-risk screening population, the MT-sDNA test has an increased sensitivity for detecting advanced precancerous lesions compared with FIT alone. AAs with a high risk of progression were not detected with significantly higher sensitivity by MT-sDNA or FIT.
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- 2019
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17. KRAS status is related to histological phenotype in gastric cancer: results from a large multicentre study
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Hewitt, L.C., Saito, Y., Wang, T.V. (Tong), Matsuda, Y., Oosting, J. (Jan), Silva, A.N.S., Slaney, H.L., Melotte, V., Hutchins, G., Tan, P. (Patrick), Yoshikawa, T., Arai, T. (Takashi), Grabsch, H.I., Hewitt, L.C., Saito, Y., Wang, T.V. (Tong), Matsuda, Y., Oosting, J. (Jan), Silva, A.N.S., Slaney, H.L., Melotte, V., Hutchins, G., Tan, P. (Patrick), Yoshikawa, T., Arai, T. (Takashi), and Grabsch, H.I.
- Abstract
Background Gastric cancer (GC) is histologically a very heterogeneous disease, and the temporal development of diferent histological phenotypes remains unclear. Recent studies in lung and ovarian cancer suggest that KRAS activation (KRASact) can infuence histological phenotype. KRASact likely results from KRAS mutation (KRASmut) or KRAS amplifcation (KRASamp). The aim of the study was to investigate whether KRASmut and/or KRASamp are related to the histological phenotype in GC. Methods Digitized haematoxylin/eosin-stained slides from 1282 GC resection specimens were classifed according to Japanese Gastric Cancer Association (JGCA) and the Lauren classifcation by at least two observers. The relationship between KRAS status, predominant histological phenotype and clinicopathological variables was assessed. Results KRASmut and KRASamp were found in 68 (5%) and 47 (7%) GCs, respectively. Within the KRASmut and KRASamp cases, the most frequent GC histological phenotype was moderately diferentiated tubular 2 (tub2) type (KRASmut: n=27, 40%; KRASamp: n=21, 46%) or intestinal type (KRASmut: n=41, 61%; KRASamp: n=23, 50%). Comparing individual histological subtypes, mucinous carcinoma displayed the highest frequency of KRASmut (JGCA: n=6, 12%, p=0.012; Lauren: n=6, 12%, p=0.013), and KRASamp was more frequently found in poorly diferentiated solid type (n=12, 10%, p=0.267) or indeterminate type (n=12, 10%, p=0.480) GC. 724 GCs (57%) had intratumour morphological heterogeneity. Conclusions This is the largest GC study investigating KRAS status and histological phenotype. We identifed a relationship between KRASmut and mucinous phenotype. The high level of intratumour morphological heterogeneity could refect KRASmut heterogeneity, which may explain the failure of anti-EGFR therapy in GC.
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- 2019
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18. Nervous NDRGs: the N-myc downstream–regulated gene family in the central and peripheral nervous system
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Schonkeren, S.L. (Simone L.), Massen, M. (Maartje), van der Horst, R. (Raisa), Koch, A. (Alexander), Vaes, N. (Nathalie), Melotte, V. (Veerle), Schonkeren, S.L. (Simone L.), Massen, M. (Maartje), van der Horst, R. (Raisa), Koch, A. (Alexander), Vaes, N. (Nathalie), and Melotte, V. (Veerle)
- Abstract
The N-Myc downstream-regulated gene (NDRG) family consists of four members (NDRG1, NDRG2, NDRG3, NDRG4) that are differentially expressed in various organs and function in important processes, like cell proliferation and differentiation. In the last couple of decades, interest in this family has risen due to its connection with several disorders of the nervous system including Charcot-Marie-Tooth disease and dementia, as well as nervous system cancers. By combining a literature review with in silico data analysis of publicly available datasets, such as the Mouse Brain Atlas, BrainSpan, the Genotype-Tissue Expression (GTEx) project, and Gene Expression Omnibus (GEO) datasets, this review summarizes the expression and functions of the NDRG family in the healthy and diseased nervous system. We here show that the NDRGs have a differential, relatively cell type–specific, expression pattern in the nervous system. Even though NDRGs share functionalities, like a role in vesicle trafficking, stress response, and neurite outgrowth, other functionalities seem to be unique to a specific member, e.g., the role of NDRG1 in myelination. Furthermore, mutations, phosphorylation, or changes in expression of NDRGs are related to nervous system diseases, including peripheral neuropathy and different forms of dementia. Moreover, NDRG1, NDRG2, and NDRG4 are all involved in cancers of the nervous system, such as glioma, neuroblastoma, or meningioma. All in all, our review elucidates that although the NDRGs belong to the same gene family and share some functional features, they should be considered unique in their expression patterns and functional importance for nervous system development and neuronal diseases.
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- 2019
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19. Building a Professional Identity and an Academic Career Track in Translational Medicine
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Dijk, S.J. (Sabine) van, Domenighetti, A.A., Gomez-Ospina, N., Hunter, P., Lindemans, CA, Melotte, V., Rossum, A.M.C. (Annemarie) van, Rosenblum, N.D., Dijk, S.J. (Sabine) van, Domenighetti, A.A., Gomez-Ospina, N., Hunter, P., Lindemans, CA, Melotte, V., Rossum, A.M.C. (Annemarie) van, and Rosenblum, N.D.
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Biomedical scientists aim to contribute to further understanding of disease pathogenesis and to develop new diagnostic and therapeutic tools that relieve disease burden. Yet the majority of biomedical scientists do not develop their academic career or professional identity as “translational scientists,” and are not actively involved in the continuum from scientific concept to development of new strategies that change medical practice. The collaborative nature of translational medicine and the lengthy proces
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- 2019
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20. Multitarget Stool DNA Test Performance in an Average-Risk Colorectal Cancer Screening Population
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Bosch, LJ, Melotte, V, Mongera, S, Daenen, KLJ, Coupe, VMH, van Turenhout, ST, Stoop, Esther, de Wijkerslooth, TR, Mulder, CJ, Rausch, C, Kuipers, Ernst, Dekker, E, Domanico, MJ, Lidgard, GP, Berger, BM, van Engeland, M, Carvalho, B, Meijer, GA, Bosch, LJ, Melotte, V, Mongera, S, Daenen, KLJ, Coupe, VMH, van Turenhout, ST, Stoop, Esther, de Wijkerslooth, TR, Mulder, CJ, Rausch, C, Kuipers, Ernst, Dekker, E, Domanico, MJ, Lidgard, GP, Berger, BM, van Engeland, M, Carvalho, B, and Meijer, GA
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- 2019
21. Multitarget Stool DNA Test Performance in an Average-Risk Colorectal Cancer Screening Population
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Bosch, L.J.W., primary, Melotte, V., additional, Mongera, S., additional, Daenen, K.L.J., additional, Coupé, V.M.H., additional, van Turenhout, S.T., additional, Stoop, E.M., additional, de Wijkerslooth, T.R., additional, Mulder, C.J.J., additional, Rausch, C., additional, Kuipers, E.J., additional, Dekker, E., additional, Domanico, M.J., additional, Lidgard, G.P., additional, Berger, B.M., additional, van Engeland, M., additional, Carvalho, B., additional, and Meijer, G.A., additional
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- 2019
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22. Prognostic DNA methylation markers for sporadic colorectal cancer: A systematic review
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Draht, M.X.G. (Muriel X.G.), Goudkade, D. (Danny), Koch, A. (Alexander), Grabsch, H. (Heike), Weijenberg, M.P. (Matty), Engeland, M. (Manon) van, Melotte, V. (Veerle), Smits, K.M. (Kim M.), Draht, M.X.G. (Muriel X.G.), Goudkade, D. (Danny), Koch, A. (Alexander), Grabsch, H. (Heike), Weijenberg, M.P. (Matty), Engeland, M. (Manon) van, Melotte, V. (Veerle), and Smits, K.M. (Kim M.)
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Background: Biomarkers that can predict the prognosis of colorectal cancer (CRC) patients and that can stratify high-risk early stage patients from low-risk early stage patients are urgently needed for better management of CRC. During the last decades, a large variety of prognostic DNA methylation markers has been published in the literature. However, to date, none of these markers are used in clinical practice. Methods: To obtain an overview of the number of published prognostic methylation markers for CRC, the number of markers that was validated independently, and the current level of evidence (LoE), we conducted a systematic review of PubMed, EMBASE, and MEDLINE. In addition, we scored studies based on the REMARK guidelines that were established in order to attain more transparency and complete reporting of prognostic biomarker studies. Eighty-three studies reporting on 123 methylation markers fulfilled the study entry criteria and were scored according to REMARK. Results: Sixty-three studies investigated single methylation markers, whereas 20 studies reported combinations of methylation markers. We observed substantial variation regarding the reporting of sample sizes and patient characteristics, statistical analyses, and methodology. The median (range) REMARK score for the studies was 10.7 points (4.5 to 17.5) out of a maximum of 20 possible points. The median REMARK score was lower in studies, which reported a p value below 0.05 versus those, which did not (p =0.005). A borderline statistically significant association was observed between the reported p value of the survival analysis and the size of the study population (p =0.051). Only 23 out of 123 markers (17%) were investigated in two or more study series. For 12 markers, and two multimarker panels, consistent results were reported in two or more study series. For four markers, the current LoE is level II, for all other markers, the LoE is lower. Conclusion: This systematic review reflects that adequate r
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- 2018
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23. Epstein-Barr virus and mismatch repair deficiency status differ between oesophageal and gastric cancer: A large multi-centre study
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Hewitt, L. C., Inam, I. Z., Saito, Y., Yoshikawa, T., Quaas, A., Hoelscher, A., Bollschweiler, E., Fazzi, G. E., Melotte, V., Langley, R. E., Nankivell, M., Cunningham, D., Allum, W., Hutchins, G. G., Grabsch, H. I., Hewitt, L. C., Inam, I. Z., Saito, Y., Yoshikawa, T., Quaas, A., Hoelscher, A., Bollschweiler, E., Fazzi, G. E., Melotte, V., Langley, R. E., Nankivell, M., Cunningham, D., Allum, W., Hutchins, G. G., and Grabsch, H. I.
- Abstract
Background: Oesophageal (OeC) and gastric (GC) cancer patients are treated with similar multimodal therapy and have poor survival. There remains an urgent clinical need to identify biomarkers to individualise patient management and improve outcomes. Therapy with immune checkpoint inhibitors has shown promising results in other cancers. Proposed biomarkers to predict potential response to immune checkpoint inhibitors include DNA mismatch repair (MMR) and/ or EpsteineBarr virus (EBV) status. The aim of this study was to establish and compare EBV status and MMR status in large multi-centre series of OeC and GC. Methods: EBV was assessed by EBV-encoded RNA (EBER) in situ hybridisation and MMR protein expression by immunohistochemistry (IHC) in 988 OeC and 1213 GC from multiple centres. In a subset of OeC, microsatellite instability (MSI) was tested in parallel with MMR IHC. Results: Frequency of MMR deficiency (MMRdef) and MSI was low in OeC (0.8% and 0.6%, respectively) compared with GC (10.3%). None of the OeCs were EBER positive in contrast to 4.8% EBER positive GC. EBV positive GC patients were younger (p = 0.01), more often male (p = 0.001) and had a better overall survival (p = 0.012). MMRdef GC patients were older (p = 0.001) and showed more often intestinal-type histology (p = 0.022). Conclusions: This is the largest study to date indicating that EBV and MMRdef do not play a role in OeC carcinogenesis in contrast to GC. The potential clinical usefulness of determining MMRdef/EBV status to screen patients for eligibility for immune-targeting therapy differs between OeC and GC patients. (C) 2018 The Authors. Published by Elsevier Ltd.
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- 2018
24. No Epstein-Barr Virus Infection and Extremely Rare Mismatch Repair Deficiency in Oesophageal Cancer
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Hewitt, L. C., Inam, I. Z., Yoshikawa, T., Quaas, A., Hoelscher, A., Saito, Y., Fazzi, G., Melotte, V., Langley, R. E., Cunningham, D., Allum, W., Hutch-ins, G. G., Grabsch, H. I., Hewitt, L. C., Inam, I. Z., Yoshikawa, T., Quaas, A., Hoelscher, A., Saito, Y., Fazzi, G., Melotte, V., Langley, R. E., Cunningham, D., Allum, W., Hutch-ins, G. G., and Grabsch, H. I.
- Published
- 2017
25. N-Myc downstream-regulated gene 4 (NDRG4): a candidate tumor suppressor gene and potential biomarker for colorectal cancer
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Melotte, V., Melotte, V., Lentjes, M.H., van den Bosch, S.M., Hellebrekers, D.M., de Hoon, J.P.J., Wouters, K.A., Daenen, K.L., Partouns Hendriks, I.E., Stessels, F., Louwagie, J., Smits, K.M., Weijenberg, M.P., Sanduleanu, S., Khalid - de Bakker, C.A., Oort, F.A., Meijer, G.A., Jonkers, D.M., Herman, J.G., de Bruine, A.P., van Engeland, M., Melotte, V., Melotte, V., Lentjes, M.H., van den Bosch, S.M., Hellebrekers, D.M., de Hoon, J.P.J., Wouters, K.A., Daenen, K.L., Partouns Hendriks, I.E., Stessels, F., Louwagie, J., Smits, K.M., Weijenberg, M.P., Sanduleanu, S., Khalid - de Bakker, C.A., Oort, F.A., Meijer, G.A., Jonkers, D.M., Herman, J.G., de Bruine, A.P., and van Engeland, M.
- Abstract
BACKGROUND: Identification of hypermethylated tumor suppressor genes in body fluids is an appealing strategy for the noninvasive detection of colorectal cancer. Here we examined the role of N-Myc downstream-regulated gene 4 (NDRG4) as a novel tumor suppressor and biomarker in colorectal cancer. METHODS: NDRG4 promoter methylation was analyzed in human colorectal cancer cell lines, colorectal tissue, and noncancerous colon mucosa by using methylation-specific polymerase chain reaction (PCR) and bisulfite sequencing. NDRG4 mRNA and protein expression were studied using real-time-PCR and immunohistochemistry, respectively. Tumor suppressor functions of NDRG4 were examined by colony formation, cell proliferation, and migration and invasion assays in colorectal cancer cell lines that were stably transfected with an NDRG4 expression construct. Quantitative methylation-specific PCR was used to examine the utility of NDRG4 promoter methylation as a biomarker in fecal DNA from 75 colorectal cancer patients and 75 control subjects. All P values are two-sided. RESULTS: The prevalence of NDRG4 promoter methylation in two independent series of colorectal cancers was 86% (71/83) and 70% (128/184) compared with 4% (2/48) in noncancerous colon mucosa (P < .001). NDRG4 mRNA and protein expression were decreased in colorectal cancer tissue compared with noncancerous colon mucosa. NDRG4 overexpression in colorectal cancer cell lines suppressed colony formation (P = .014), cell proliferation (P < .001), and invasion (P < .001). NDRG4 promoter methylation analysis in fecal DNA from a training set of colorectal cancer patients and control subjects yielded a sensitivity of 61% (95% confidence interval [CI] = 43% to 79%) and a specificity of 93% (95% CI = 90% to 97%). An independent test set of colorectal cancer patients and control subjects yielded a sensitivity of 53% (95% CI = 39% to 67%) and a specificity of 100% (95% CI = 86% to 100%). CONCLUSIONS: NDRG4 is a candidate tumor
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- 2009
26. N-Myc Downstream regulated gene 4 (NDRG4) promoter methylation is a sensitive and specific biomarker for colorectal cancer ambridge, Massachusetts
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Melotte, V., Lentjes, M., van den Bosch, S., Hellebrekers, D.M.E.I., Wouters, K., Menting, D., Daenen, K., Sanduleanu, S., Khalid, C., Weijenberg, M.P., Oort, F., Meijer, G.J., Herman, J., de Bruine, A., van Engeland, M., Pathologie, Interne Geneeskunde, Epidemiologie, RS: NUTRIM School of Nutrition and Translational Research in Metabolism, and RS: NUTRIM - R2 - Gut-liver homeostasis
- Published
- 2007
27. The CpG island methylator phenotype: What's in a name?
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Hughes, L.A.E. (Laura A.), Melotte, V. (Veerle), Schrijver, J.D. (Joachim De), Maat, M.P.M. (Moniek) de, Smit, V.T.H.B.M. (Vincent), Bovée, J.V.M.G. (Judith), French, P.J. (Pim), Brandt, P.A. (Piet) van den, Schouten, L. (Leo), Meyer, T. (Thorsten), Criekinge, W. (Wim) van, Ahuja, N. (Nita), Herman, J.G. (James), Weijenberg, M.P. (Matty), Engeland, M. (Manon) van, Hughes, L.A.E. (Laura A.), Melotte, V. (Veerle), Schrijver, J.D. (Joachim De), Maat, M.P.M. (Moniek) de, Smit, V.T.H.B.M. (Vincent), Bovée, J.V.M.G. (Judith), French, P.J. (Pim), Brandt, P.A. (Piet) van den, Schouten, L. (Leo), Meyer, T. (Thorsten), Criekinge, W. (Wim) van, Ahuja, N. (Nita), Herman, J.G. (James), Weijenberg, M.P. (Matty), and Engeland, M. (Manon) van
- Abstract
Although the CpG island methylator phenotype (CIMP) was first identified and has been most extensively studied in colorectal cancer, the term "CIMP" has been repeatedly used over the past decade to describe CpG island promoter methylation in other tumor types, including bladder, breast, endometrial, gastric, glioblastoma (gliomas), hepatocellular, lung, ovarian, pancreatic, renal cell, and prostate cancers, as well as for leukemia, melanoma, duodenal adenocarninomas, adrenocortical carcinomas, and neuroblastomas. CIMP has been reported to be useful for predicting prognosis and response to treatment in a variety of tumor types, but it remains unclear whether or not CIMP is a universal phenomenon across human neoplasia or if there should be cancer-specific definitions of the phenotype. Recently, it was shown that somatic isocitrate dehydrogenase-1 (IDH1) mutations, frequently observed in gliomas, establish CIMP in primary human astrocytes by remodeling the methylome. Interestingly, somatic IDH1 and IDH2 mutations, and loss-of-function mutations in ten-eleven translocation (TET) methylcytosine dioxygenase-2 (TET2) associated with a hypermethylation phenotype, are also found in multiple enchondromas of patients with Ollier disease and Mafucci syndrome, and leukemia, respectively. These data provide the first clues for the elucidation of a molecular basis for CIMP. Although CIMP appears as a phenomenon that occurs in various cancer types, the definition is poorly defined and differs for each tumor. The current perspective discusses the use of the term CIMP in cancer, its significance in clinical practice, and future directions that may aid in identifying the true cause and definition of CIMP in different forms of human neoplasia.
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- 2013
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28. GATA4 and GATA5 are potential tumor suppressors and biomarkers in colorectal cancer
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Hellebrekers, D.M., Hellebrekers, D.M., Lentjes, M.H., van den Bosch, S.M., Melotte, V., Wouters, K.A., Daenen, K.L., Smits, K.M., Akiyama, Y., Yuasa, Y., Sanduleanu, S., Khalid - de Bakker, C.A., Jonkers, D., Weijenberg, M.P., Louwagie, J., van Criekinge, W., Carvalho, B., Meijer, G.A., Baylin, S.B., Herman, J.G., de Bruine, A.P., van Engeland, M., Hellebrekers, D.M., Hellebrekers, D.M., Lentjes, M.H., van den Bosch, S.M., Melotte, V., Wouters, K.A., Daenen, K.L., Smits, K.M., Akiyama, Y., Yuasa, Y., Sanduleanu, S., Khalid - de Bakker, C.A., Jonkers, D., Weijenberg, M.P., Louwagie, J., van Criekinge, W., Carvalho, B., Meijer, G.A., Baylin, S.B., Herman, J.G., de Bruine, A.P., and van Engeland, M.
- Abstract
PURPOSE: The transcription factors GATA4 and GATA5 are involved in gastrointestinal development and are inactivated by promoter hypermethylation in colorectal cancer. Here, we evaluated GATA4/5 promoter methylation as potential biomarkers for noninvasive colorectal cancer detection, and investigated the role of GATA4/5 in colorectal cancer. EXPERIMENTAL DESIGN: Promoter methylation of GATA4/5 was analyzed in colorectal tissue and fecal DNA from colorectal cancer patients and healthy controls using methylation-specific PCR. The potential function of GATA4/5 as tumor suppressors was studied by inducing GATA4/5 overexpression in human colorectal cancer cell lines. RESULTS: GATA4/5 methylation was observed in 70% (63/90) and 79% (61/77) of colorectal carcinomas, respectively, and was independent of clinicopathologic features. Methylation frequencies in normal colon tissues from noncancerous controls were 6% (5 of 88, GATA4; P < 0.001) and 13% (13 of 100, GATA5; P < 0.001). GATA4/5 overexpression suppressed colony formation (P < 0.005), proliferation (P < 0.001), migration (P < 0.05), invasion (P < 0.05), and anchorage-independent growth (P < 0.0001) of colorectal cancer cells. Examination of GATA4 methylation in fecal DNA from two independent series of colorectal cancer patients and controls yielded a sensitivity of 71% [95% confidence interval (95% CI), 55-88%] and specificity of 84% (95% CI, 74-95%) for colorectal cancer detection in the training set, and a sensitivity of 51% (95% CI, 37-65%) and specificity of 93% (95% CI, 84-100%) in the validation set. CONCLUSIONS: Methylation of GATA4/5 is a common and specific event in colorectal carcinomas, and GATA4/5 exhibit tumor suppressive effects in colorectal cancer cells in vitro. GATA4 methylation in fecal DNA may be of interest for colorectal cancer detection.
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- 2009
29. Neuronal Distribution in Colorectal Cancer: Associations With Clinicopathological Parameters and Survival.
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Massen M, Thijssen MS, Rademakers G, Idris M, Wouters KAD, van der Meer JRM, Buekers N, Huijgen D, Samarska IV, Weijenberg MP, van den Brandt PA, van Engeland M, Gijbels MJ, Boesmans W, Smits KM, and Melotte V
- Subjects
- Humans, Male, Female, Middle Aged, Aged, Neurons pathology, Neurons metabolism, Ubiquitin Thiolesterase analysis, Ubiquitin Thiolesterase metabolism, Immunohistochemistry, Neurofilament Proteins analysis, Neurofilament Proteins metabolism, Prognosis, Kaplan-Meier Estimate, Aged, 80 and over, Netherlands, Adult, Colorectal Neoplasms pathology, Colorectal Neoplasms mortality, Colorectal Neoplasms metabolism, Biomarkers, Tumor analysis
- Abstract
Over the past years, insights in the cancer neuroscience field increased rapidly, and a potential role for neurons in colorectal carcinogenesis has been recognized. However, knowledge on the neuronal distribution, subtypes, origin, and associations with clinicopathological characteristics in human studies is sparse. In this study, colorectal tumor tissues from the Netherlands Cohort Study on diet and cancer (n = 490) and an in-cohort validation population (n = 529) were immunohistochemically stained for the pan-neuronal markers neurofilament (NF) and protein gene product 9.5 (PGP9.5) to study the association between neuronal marker expression and clinicopathological characteristics. In addition, tumor and healthy colon tissues were stained for neuronal subtype markers, and their immunoreactivity in colorectal cancer (CRC) stroma was analyzed. NF-positive and PGP9.5-positive nerve fibers were found within the tumor stroma and mostly characterized by the neuronal subtype markers vasoactive intestinal peptide and neuronal nitric oxide synthase, suggesting that inhibitory neurons are the most prominent neuronal subtype in CRC. NF and PGP9.5 protein expression were not consistently associated with tumor stage, sublocation, differentiation grade, and median survival. NF immunoreactivity was associated with a worse CRC-specific survival in the study cohort (P = .025) independent of other prognostic factors (hazard ratio, 2.31; 95% CI, 1.33-4.03; P = .003), but these results were not observed in the in-cohort validation group. PGP9.5, in contrast, was associated with a worse CRC-specific survival in the in-cohort validation (P = .046) but not in the study population. This effect disappeared in multivariate analyses (hazard ratio, 0.81; 95% CI, 0.50-1.32; P = .393), indicating that this effect was dependent on other prognostic factors. This study demonstrates that the tumor stroma of CRC patients mainly harbors inhibitory neurons and that NF as a single marker is significantly associated with a poorer CRC-specific survival in the study cohort but necessitates future validation., (Copyright © 2024 The Authors. Published by Elsevier Inc. All rights reserved.)
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- 2024
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30. Differences in enteric neuronal density in the NSE-Noggin mouse model across institutes.
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Schonkeren SL, Thijssen MS, Idris M, Wouters K, de Vaan J, Teubner A, Gijbels MJ, Boesmans W, and Melotte V
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- Mice, Animals, Carrier Proteins metabolism, Myenteric Plexus, Mice, Transgenic, Colon, Neurons metabolism, Enteric Nervous System metabolism
- Abstract
The enteric nervous system (ENS) is a large and complex part of the peripheral nervous system, and it is vital for gut homeostasis. To study the ENS, different hyper- and hypo-innervated model systems have been developed. The NSE-Noggin mouse model was described as one of the few models with a higher enteric neuronal density in the colon. However, in our hands NSE-Noggin mice did not present with a hyperganglionic phenotype. NSE-Noggin mice were phenotyped based on fur appearance, genotyped and DNA sequenced to demonstrate transgene and intact NSE-Noggin-IRES-EGFP construct presence, and RNA expression of Noggin was shown to be upregulated. Positive EGFP staining in the plexus of NSE-Noggin mice also confirmed Noggin protein expression. Myenteric plexus preparations of the colon were examined to quantify both the overall density of enteric neurons and the proportions of enteric neurons expressing specific subtype markers. The total number of enteric neurons in the colonic myenteric plexus of transgenic mice did not differ significantly from wild types, nor did the proportion of calbindin, calretinin, or serotonin immunoreactive myenteric neurons. Possible reasons as to why the hyperinnervated phenotype could not be observed in contrast with original studies using this mouse model are discussed, including study design, influence of microbiota, and other environmental variables., (© 2024. The Author(s).)
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- 2024
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31. Gut Isolation from Zebrafish Larvae for Single-cell RNA Sequencing.
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Kakiailatu NJM, Kuil LE, Bindels E, Zink JTM, Vermeulen M, Melotte V, and Alves MM
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- Animals, Larva genetics, Intestines, Sequence Analysis, RNA, Zebrafish genetics, Gastrointestinal Tract physiology
- Abstract
The gastrointestinal (GI) tract performs a range of functions essential for life. Congenital defects affecting its development can lead to enteric neuromuscular disorders, highlighting the importance to understand the molecular mechanisms underlying GI development and dysfunction. In this study, we present a method for gut isolation from zebrafish larvae at 5 days post fertilization to obtain live, viable cells which can be used for single-cell RNA sequencing (scRNA-seq) analysis. This protocol is based on the manual dissection of the zebrafish intestine, followed by enzymatic dissociation with papain. Subsequently, cells are submitted to fluorescence-activated cell sorting, and viable cells are collected for scRNA-seq. With this method, we were able to successfully identify different intestinal cell types, including epithelial, stromal, blood, muscle, and immune cells, as well as enteric neurons and glia. Therefore, we consider it to be a valuable resource for studying the composition of the GI tract in health and disease, using the zebrafish.
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- 2023
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32. Promoter hypermethylation of neural-related genes is compatible with stemness in solid cancers.
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Idris M, Coussement L, Alves MM, De Meyer T, and Melotte V
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- Humans, DNA, DNA Methylation, Colonic Neoplasms genetics
- Abstract
Background: DNA hypermethylation is an epigenetic feature that modulates gene expression, and its deregulation is observed in cancer. Previously, we identified a neural-related DNA hypermethylation fingerprint in colon cancer, where most of the top hypermethylated and downregulated genes have known functions in the nervous system. To evaluate the presence of this signature and its relevance to carcinogenesis in general, we considered 16 solid cancer types available in The Cancer Genome Atlas (TCGA)., Results: All tested cancers showed significant enrichment for neural-related genes amongst hypermethylated genes. This signature was already present in two premalignant tissue types and could not be explained by potential confounders such as bivalency status or tumor purity. Further characterization of the neural-related DNA hypermethylation signature in colon cancer showed particular enrichment for genes that are overexpressed during neural differentiation. Lastly, an analysis of upstream regulators identified RE1-Silencing Transcription factor (REST) as a potential mediator of this DNA methylation signature., Conclusion: Our study confirms the presence of a neural-related DNA hypermethylation fingerprint in various cancers, of genes linked to neural differentiation, and points to REST as a possible regulator of this mechanism. We propose that this fingerprint indicates an involvement of DNA hypermethylation in the preservation of neural stemness in cancer cells., (© 2023. BioMed Central Ltd., part of Springer Nature.)
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- 2023
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33. An optimization and refinement of the whole-gut transit assay in mice.
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Schonkeren SL, Seeldrayers S, Thijssen MS, Boesmans W, Langen RCJ, and Melotte V
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- Mice, Animals, Feces, Water, Gastrointestinal Transit physiology, Gastrointestinal Motility physiology, Loperamide pharmacology
- Abstract
Background: Gastrointestinal motility measurements in mice are currently performed under suboptimal conditions, as these nocturnal animals are measured during light conditions. In addition, other stressors, like individual housing, placement in a new cage during observation, and lack of bedding and cage enrichment cause animal discomfort and might contribute to higher variability. Here we aimed to develop a refined method of the widely-used whole-gut transit assay., Methods: Wildtype mice (N = 24) were subjected to the standard or refined whole-gut transit assay, either with or without a standardized slowing in gastrointestinal motility induced by loperamide. The standard assay consisted of a gavage with carmine red, observation during the light period and individual housing in a new cage without cage enrichment. For the refined whole-gut transit assay, mice were gavaged with UV-fluorescent DETEX®, observed during the dark period, while pairwise housed in their home cage with cage enrichment. Time until excretion of the first colored fecal pellet was assessed, and pellets were collected to assess number, weight, and water content., Key Results: The DETEX®-containing pellets were UV-detectable, allowing to measure the mice in their active period in the dark. The refined method caused less variation (20.8% and 16.0%) compared to the standard method (29.0% and 21.7%). Fecal pellet number, weight, and water content was significantly different between the standard and refined method., Conclusions & Inferences: This refined whole-gut transit assay provides a reliable approach to measure whole-gut transit time in mice in a more physiological context, with reduced variability compared to the standard method., (© 2023 The Authors. Neurogastroenterology & Motility published by John Wiley & Sons Ltd.)
- Published
- 2023
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34. Unbiased characterization of the larval zebrafish enteric nervous system at a single cell transcriptomic level.
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Kuil LE, Kakiailatu NJM, Windster JD, Bindels E, Zink JTM, van der Zee G, Hofstra RMW, Shepherd IT, Melotte V, and Alves MM
- Abstract
The enteric nervous system (ENS) regulates many gastrointestinal functions including peristalsis, immune regulation and uptake of nutrients. Defects in the ENS can lead to severe enteric neuropathies such as Hirschsprung disease (HSCR). Zebrafish have proven to be fruitful in the identification of genes involved in ENS development and HSCR pathogenesis. However, composition and specification of enteric neurons and glial subtypes at larval stages, remains mainly unexplored. Here, we performed single cell RNA sequencing of zebrafish ENS at 5 days post-fertilization. We identified vagal neural crest progenitors, Schwann cell precursors, and four clusters of differentiated neurons. In addition, a previously unrecognized elavl3+/phox2bb- population of neurons and cx43+ / phox2bb- enteric glia was found. Pseudotime analysis supported binary neurogenic branching of ENS differentiation, driven by a notch-responsive state. Taken together, we provide new insights on ENS development and specification, proving that the zebrafish is a valuable model for the study of congenital enteric neuropathies., Competing Interests: The authors declare no competing interest, (© 2023 The Author(s).)
- Published
- 2023
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35. Tumour infiltrating lymphocytes and survival after adjuvant chemotherapy in patients with gastric cancer: post-hoc analysis of the CLASSIC trial.
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Liu DHW, Kim YW, Sefcovicova N, Laye JP, Hewitt LC, Irvine AF, Vromen V, Janssen Y, Davarzani N, Fazzi GE, Jolani S, Melotte V, Magee DR, Kook MC, Kim H, Langer R, Cheong JH, and Grabsch HI
- Subjects
- Humans, Biomarkers, Chemotherapy, Adjuvant, Prognosis, Lymphocytes, Tumor-Infiltrating pathology, Stomach Neoplasms drug therapy, Stomach Neoplasms surgery
- Abstract
Background: Only a subset of gastric cancer (GC) patients with stage II-III benefits from chemotherapy after surgery. Tumour infiltrating lymphocytes per area (TIL density) has been suggested as a potential predictive biomarker of chemotherapy benefit., Methods: We quantified TIL density in digital images of haematoxylin-eosin (HE) stained tissue using deep learning in 307 GC patients of the Yonsei Cancer Center (YCC) (193 surgery+adjuvant chemotherapy [S + C], 114 surgery alone [S]) and 629 CLASSIC trial GC patients (325 S + C and 304 S). The relationship between TIL density, disease-free survival (DFS) and clinicopathological variables was analysed., Results: YCC S patients and CLASSIC S patients with high TIL density had longer DFS than S patients with low TIL density (P = 0.007 and P = 0.013, respectively). Furthermore, CLASSIC patients with low TIL density had longer DFS if treated with S + C compared to S (P = 0.003). No significant relationship of TIL density with other clinicopathological variables was found., Conclusion: This is the first study to suggest TIL density automatically quantified in routine HE stained tissue sections as a novel, clinically useful biomarker to identify stage II-III GC patients deriving benefit from adjuvant chemotherapy. Validation of our results in a prospective study is warranted., (© 2023. The Author(s), under exclusive licence to Springer Nature Limited.)
- Published
- 2023
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36. Nerves in gastrointestinal cancer: from mechanism to modulations.
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Vaes N, Idris M, Boesmans W, Alves MM, and Melotte V
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- Humans, Tumor Microenvironment physiology, Signal Transduction, Carcinogenesis, Ecosystem, Gastrointestinal Neoplasms etiology, Gastrointestinal Neoplasms pathology
- Abstract
Maintenance of gastrointestinal health is challenging as it requires balancing multifaceted processes within the highly complex and dynamic ecosystem of the gastrointestinal tract. Disturbances within this vibrant environment can have detrimental consequences, including the onset of gastrointestinal cancers. Globally, gastrointestinal cancers account for ~19% of all cancer cases and ~22.5% of all cancer-related deaths. Developing new ways to more readily detect and more efficiently target these malignancies are urgently needed. Whereas members of the tumour microenvironment, such as immune cells and fibroblasts, have already been in the spotlight as key players of cancer initiation and progression, the importance of the nervous system in gastrointestinal cancers has only been highlighted in the past few years. Although extrinsic innervations modulate gastrointestinal cancers, cells and signals from the gut's intrinsic innervation also have the ability to do so. Here, we shed light on this thriving field and discuss neural influences during gastrointestinal carcinogenesis. We focus on the interactions between neurons and components of the gastrointestinal tract and tumour microenvironment, on the neural signalling pathways involved, and how these factors affect the cancer hallmarks, and discuss the neural signatures in gastrointestinal cancers. Finally, we highlight neural-related therapies that have potential for the management of gastrointestinal cancers., (© 2022. Springer Nature Limited.)
- Published
- 2022
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37. ATG12 deficiency results in intracellular glutamine depletion, abrogation of tumor hypoxia and a favorable prognosis in cancer.
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Keulers TG, Koch A, van Gisbergen MW, Barbeau LMO, Zonneveld MI, de Jong MC, Savelkouls KGM, Wanders RG, Bussink J, Melotte V, and Rouschop KMA
- Subjects
- Animals, Autophagy genetics, Fibroblasts metabolism, Humans, Mice, Tumor Hypoxia, Tumor Microenvironment, Vascular Endothelial Growth Factor A metabolism, Autophagy-Related Protein 12 genetics, Glutamine metabolism, Head and Neck Neoplasms diagnosis, Head and Neck Neoplasms genetics, Squamous Cell Carcinoma of Head and Neck diagnosis, Squamous Cell Carcinoma of Head and Neck genetics
- Abstract
Hypoxia is a common feature of solid tumors and is associated with increased tumor progression, resistance to therapy and increased metastasis. Hence, tumor hypoxia is a prognostic factor independent of treatment modality. To survive hypoxia, cells activate macroautophagy/autophagy. Paradoxically, in several cancer types, mutations or loss of essential autophagy genes have been reported that are associated with earlier onset of tumor growth. However, to our knowledge, the phenotypic and therapeutic consequences of autophagy deficiency have remained unexplored. In this study, we determined autophagy-defects in head and neck squamous cell carcinoma (HNSCC) and observed that expression of ATG12 (autophagy related 12) was lost in 25%-40% of HNSCC. In line, ATG12 loss is associated with absence of hypoxia, as determined by pimonidazole immunohistochemistry. Hence, ATG12 loss is associated with improved prognosis after therapy in two independent HNSCC cohorts and 7 additional cancer types. In vivo , ATG12 targeting resulted in decreased hypoxia tolerance, increased necrosis and sensitivity of the tumor to therapy, but in vitro ATG12-deficient cells displayed enhanced survival in nutrient-rich culture medium. Besides oxygen, delivery of glucose was hampered in hypoxic regions in vivo , which increases the reliance of cells on other carbon sources (e.g., L-glutamine). We observed decreased intracellular L-glutamine levels in ATG12-deficient cells during hypoxia and increased cell killing after L-glutamine depletion, indicating a central role for ATG12 in maintaining L-glutamine homeostasis. Our results demonstrate that ATG12
low tumors represent a phenotypically different subtype that, due to the lowered hypoxia tolerance, display a favorable outcome after therapy. Abbreviations: ARCON:accelerated radiotherapy with carbogen and nicotinamide; ATG: autophagy related; BrdUrd: bromodeoxyuridine; CA9/CAIX: carbonic anhydrase 9; HIF1A/HIF1α: hypoxia inducible factor 1 subunit alpha; HNSCC: head and neck squamous cell carcinoma; HPV: human papilloma virus; HR: hazard ratio; MAP1LC3B/LC3B: microtubule associated protein 1 light chain 3 beta; MEF: mouse embryonic fibroblast; mRNA: messenger ribonucleic acid; PCR: polymerase chain reaction; SLC2A1/GLUT1: solute carrier family 2 member 1; TCGA: the Cancer Genome Atlas; TME: tumor microenvironment; UTR: untranslated region; VEGF: vascular endothelial growth factor.- Published
- 2022
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38. TFAP2B Haploinsufficiency Impacts Gastrointestinal Function and Leads to Pediatric Intestinal Pseudo-obstruction.
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Zada A, Kuil LE, de Graaf BM, Kakiailatu N, Windster JD, Brooks AS, van Slegtenhorst M, de Koning B, Wijnen RMH, Melotte V, Hofstra RMW, Brosens E, and Alves MM
- Abstract
Background: Pediatric Intestinal Pseudo-obstruction (PIPO) is a congenital enteric disorder characterized by severe gastrointestinal (GI) dysmotility, without mechanical obstruction. Although several genes have been described to cause this disease, most patients do not receive a genetic diagnosis. Here, we aim to identify the genetic cause of PIPO in a patient diagnosed with severe intestinal dysmotility shortly after birth. Methods: Whole exome sequencing (WES) was performed in the patient and unaffected parents, in a diagnostic setting. After identification of the potential disease-causing variant, its functional consequences were determined in vitro and in vivo . For this, expression constructs with and without the causing variant, were overexpressed in HEK293 cells. To investigate the role of the candidate gene in GI development and function, a zebrafish model was generated where its expression was disrupted using CRISPR/Cas9 editing. Results: WES analysis identified a de novo heterozygous deletion in TFAP2B (NM_003221.4:c.602-5_606delTCTAGTTCCA), classified as a variant of unknown significance. In vitro studies showed that this deletion affects RNA splicing and results in loss of exon 4, leading to the appearance of a premature stop codon and absence of TFAP2B protein. Disruption of tfap2b in zebrafish led to decreased enteric neuronal numbers and delayed transit time. However, no defects in neuronal differentiation were detected. tfap2b crispants also showed decreased levels of ednrbb mRNA, a downstream target of tfap2b . Conclusion: We showed that TFAP2B haploinsufficiency leads to reduced neuronal numbers and GI dysmotility, suggesting for the first time, that this gene is involved in PIPO pathogenesis., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Zada, Kuil, de Graaf, Kakiailatu, Windster, Brooks, van Slegtenhorst, de Koning, Wijnen, Melotte, Hofstra, Brosens and Alves.)
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- 2022
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39. Lessons From a Systematic Literature Search on Diagnostic DNA Methylation Biomarkers for Colorectal Cancer: How to Increase Research Value and Decrease Research Waste?
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Feng Z, Oberije CJG, van de Wetering AJP, Koch A, Wouters KAD, Vaes N, Masclee AAM, Carvalho B, Meijer GA, Zeegers MP, Herman JG, Melotte V, van Engeland M, and Smits KM
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- Biomarkers, Tumor genetics, Colonoscopy, Humans, Occult Blood, Colorectal Neoplasms diagnosis, Colorectal Neoplasms genetics, DNA Methylation
- Abstract
Objectives: To improve colorectal cancer (CRC) survival and lower incidence rates, colonoscopy and/or fecal immunochemical test screening are widely implemented. Although candidate DNA methylation biomarkers have been published to improve or complement the fecal immunochemical test, clinical translation is limited. We describe technical and methodological problems encountered after a systematic literature search and provide recommendations to increase (clinical) value and decrease research waste in biomarker research. In addition, we present current evidence for diagnostic CRC DNA methylation biomarkers., Methods: A systematic literature search identified 331 diagnostic DNA methylation marker studies published before November 2020 in PubMed, EMBASE, Cochrane Library, and Google Scholar. For 136 bodily fluid studies, extended data extraction was performed. STARD criteria and level of evidence were registered to assess reporting quality and strength for clinical translation., Results: Our systematic literature search revealed multiple issues that hamper the development of DNA methylation biomarkers for CRC diagnosis, including methodological and technical heterogeneity and lack of validation or clinical translation. For example, clinical translation and independent validation were limited, with 100 of 434 markers (23%) studied in bodily fluids, 3 of 434 markers (0.7%) translated into clinical tests, and independent validation for 92 of 411 tissue markers (22%) and 59 of 100 bodily fluids markers (59%)., Discussion: This systematic literature search revealed that major requirements to develop clinically relevant diagnostic CRC DNA methylation markers are often lacking. To avoid the resulting research waste, clinical needs, intended biomarker use, and independent validation should be better considered before study design. In addition, improved reporting quality would facilitate meta-analysis, thereby increasing the level of evidence and enabling clinical translation., (Copyright © 2022 The Author(s). Published by Wolters Kluwer Health, Inc. on behalf of The American College of Gastroenterology.)
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- 2022
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40. Technical considerations in PCR-based assay design for diagnostic DNA methylation cancer biomarkers.
- Author
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Massen M, Lommen K, Wouters KAD, Vandersmissen J, van Criekinge W, Herman JG, Melotte V, Schouten LJ, van Engeland M, and Smits KM
- Subjects
- Biomarkers, Tumor genetics, Humans, Polymerase Chain Reaction, Colorectal Neoplasms diagnosis, Colorectal Neoplasms genetics, DNA Methylation
- Abstract
Background: DNA methylation biomarkers for early detection, risk stratification and treatment response in cancer have been of great interest over the past decades. Nevertheless, clinical implementation of these biomarkers is limited, as only < 1% of the identified biomarkers is translated into a clinical or commercial setting. Technical factors such as a suboptimal genomic location of the assay and inefficient primer or probe design have been emphasized as important pitfalls in biomarker research. Here, we use eleven diagnostic DNA methylation biomarkers for colorectal cancer (ALX4, APC, CDKN2A, MGMT, MLH1, NDRG4, SDC2, SFRP1, SFRP2, TFPI1 and VIM), previously described in a systematic literature search, to evaluate these pitfalls., Results: To assess the genomic assay location, the optimal genomic locations according to TCGA data were extracted and compared to the genomic locations used in the published assays for all eleven biomarkers. In addition, all primers and probes were technically evaluated according to several criteria, based on literature and expert opinion. Both assay location and assay design quality varied widely among studies., Conclusions: Large variation in both assay location and design hinders the development of future DNA methylation biomarkers as well as inter-study comparability., (© 2022. The Author(s).)
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- 2022
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41. The gut brain in a dish: Murine primary enteric nervous system cell cultures.
- Author
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Schonkeren SL, Küthe TT, Idris M, Bon-Frauches AC, Boesmans W, and Melotte V
- Subjects
- Animals, Brain, Cell Culture Techniques, Mice, Neuroglia, Neurons metabolism, Enteric Nervous System metabolism
- Abstract
Background: The enteric nervous system (ENS) is an extensive neural network embedded in the wall of the gastrointestinal tract that regulates digestive function and gastrointestinal homeostasis. The ENS consists of two main cell types; enteric neurons and enteric glial cells. In vitro techniques allow simplified investigation of ENS function, and different culture methods have been developed over the years helping to understand the role of ENS cells in health and disease., Purpose: This review focuses on summarizing and comparing available culture protocols for the generation of primary ENS cells from adult mice, including dissection of intestinal segments, enzymatic digestions, surface coatings, and culture media. In addition, the potential of human ENS cultures is also discussed., (© 2021 The Authors. Neurogastroenterology & Motility published by John Wiley & Sons Ltd.)
- Published
- 2022
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42. Intestinal multicellular organoids to study colorectal cancer.
- Author
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Idris M, Alves MM, Hofstra RMW, Mahe MM, and Melotte V
- Subjects
- Humans, Colorectal Neoplasms immunology, Intestines immunology, Organoids immunology, Tumor Microenvironment immunology
- Abstract
Modeling colorectal cancer (CRC) using organoids has burgeoned in the last decade, providing enhanced in vitro models to study the development and possible treatment options for this type of cancer. In this review, we describe both normal and CRC intestinal organoid models and their utility in the cancer research field. Besides highlighting studies that develop epithelial CRC organoid models, i.e. organoids without tumor microenvironment (TME) cellular components, we emphasize on the need for TME in CRC modeling, to help reduce translational disparities in this area. Also, we discuss the utilization of CRC organoids derived from pluripotent stem cells, as well as their potential to be used in cancer research. Finally, limitations and challenges in the current CRC organoids field, are discussed., (Copyright © 2021 The Author(s). Published by Elsevier B.V. All rights reserved.)
- Published
- 2021
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43. WHO grade I meningiomas that show regrowth after gamma knife radiosurgery often show 1p36 loss.
- Author
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Damen PJJ, Bulthuis VJ, Hanssens PEJ, Lie ST, Fleischeuer R, Melotte V, Wouters KA, Ruland A, Beckervordersandforth J, and Speel EJM
- Subjects
- Female, Humans, Male, Middle Aged, Retrospective Studies, Survival Rate, Treatment Outcome, World Health Organization, Chromosome Deletion, Chromosomes, Human, Pair 1, Meningeal Neoplasms pathology, Meningeal Neoplasms radiotherapy, Meningioma pathology, Meningioma radiotherapy, Neoplasm Recurrence, Local pathology, Radiosurgery methods
- Abstract
WHO grade I meningiomas occasionally show regrowth after radiosurgical treatment, which cannot be predicted by clinical features. There is increasing evidence that certain biomarkers are associated with regrowth of meningiomas. The aim of this retrospective study was to asses if these biomarkers could be of value to predict regrowth of WHO grade I meningiomas after additive radiosurgery. Forty-four patients with WHO grade I meningiomas who underwent additive radiosurgical treatment between 2002 and 2015 after Simpson IV resection were included in this study, of which 8 showed regrowth. Median follow-up time was 64 months (range 24-137 months). Tumors were analyzed for the proliferation marker Ki-67 by immunohistochemistry and for deletion of 1p36 by fluorescence in situ hybridization (FISH). Furthermore, genomic DNA was analyzed for promoter hypermethylation of the genes NDRG1-4, SFRP1, HOXA9 and MGMT. Comparison of meningiomas with and without regrowth after radiosurgery revealed that loss of 1p36 (p = 0.001) and hypermethylation of NDRG1 (p = 0.046) were correlated with regrowth free survival. Loss of 1p36 was the only parameter that was significantly associated with meningioma regrowth after multivariate analysis (p = 0.01). Assessment of 1p36 loss in tumor tissue prior to radiosurgery might be considered an indicator of prognosis/regrowth. However, this finding has to be validated in an independent larger set of tumors., (© 2021. The Author(s).)
- Published
- 2021
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44. Loss of enteric neuronal Ndrg4 promotes colorectal cancer via increased release of Nid1 and Fbln2.
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Vaes N, Schonkeren SL, Rademakers G, Holland AM, Koch A, Gijbels MJ, Keulers TG, de Wit M, Moonen L, Van der Meer JRM, van den Boezem E, Wolfs TGAM, Threadgill DW, Demmers J, Fijneman RJA, Jimenez CR, Vanden Berghe P, Smits KM, Rouschop KMA, Boesmans W, Hofstra RMW, and Melotte V
- Subjects
- Calcium-Binding Proteins, Extracellular Matrix Proteins, Humans, Membrane Glycoproteins, Muscle Proteins, Nerve Tissue Proteins genetics, Neurons, Tumor Microenvironment, Colorectal Neoplasms genetics, Enteric Nervous System
- Abstract
The N-Myc Downstream-Regulated Gene 4 (NDRG4), a prominent biomarker for colorectal cancer (CRC), is specifically expressed by enteric neurons. Considering that nerves are important members of the tumor microenvironment, we here establish different Ndrg4 knockout (Ndrg4
-/- ) CRC models and an indirect co-culture of primary enteric nervous system (ENS) cells and intestinal organoids to identify whether the ENS, via NDRG4, affects intestinal tumorigenesis. Linking immunostainings and gastrointestinal motility (GI) assays, we show that the absence of Ndrg4 does not trigger any functional or morphological GI abnormalities. However, combining in vivo, in vitro, and quantitative proteomics data, we uncover that Ndrg4 knockdown is associated with enlarged intestinal adenoma development and that organoid growth is boosted by the Ndrg4-/- ENS cell secretome, which is enriched for Nidogen-1 (Nid1) and Fibulin-2 (Fbln2). Moreover, NID1 and FBLN2 are expressed in enteric neurons, enhance migration capacities of CRC cells, and are enriched in human CRC secretomes. Hence, we provide evidence that the ENS, via loss of Ndrg4, is involved in colorectal pathogenesis and that ENS-derived Nidogen-1 and Fibulin-2 enhance colorectal carcinogenesis., (© 2021 The Authors. Published under the terms of the CC BY NC ND 4.0 license.)- Published
- 2021
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45. The enteric nervous system in gastrointestinal disease etiology.
- Author
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Holland AM, Bon-Frauches AC, Keszthelyi D, Melotte V, and Boesmans W
- Subjects
- Animals, Gastrointestinal Diseases pathology, Humans, Enteric Nervous System pathology, Gastrointestinal Diseases etiology, Immune System, Inflammation physiopathology
- Abstract
A highly conserved but convoluted network of neurons and glial cells, the enteric nervous system (ENS), is positioned along the wall of the gut to coordinate digestive processes and gastrointestinal homeostasis. Because ENS components are in charge of the autonomous regulation of gut function, it is inevitable that their dysfunction is central to the pathophysiology and symptom generation of gastrointestinal disease. While for neurodevelopmental disorders such as Hirschsprung, ENS pathogenesis appears to be clear-cut, the role for impaired ENS activity in the etiology of other gastrointestinal disorders is less established and is often deemed secondary to other insults like intestinal inflammation. However, mounting experimental evidence in recent years indicates that gastrointestinal homeostasis hinges on multifaceted connections between the ENS, and other cellular networks such as the intestinal epithelium, the immune system, and the intestinal microbiome. Derangement of these interactions could underlie gastrointestinal disease onset and elicit variable degrees of abnormal gut function, pinpointing, perhaps unexpectedly, the ENS as a diligent participant in idiopathic but also in inflammatory and cancerous diseases of the gut. In this review, we discuss the latest evidence on the role of the ENS in the pathogenesis of enteric neuropathies, disorders of gut-brain interaction, inflammatory bowel diseases, and colorectal cancer.
- Published
- 2021
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46. Identification of DNA methylation markers for early detection of CRC indicates a role for nervous system-related genes in CRC.
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Rademakers G, Massen M, Koch A, Draht MX, Buekers N, Wouters KAD, Vaes N, De Meyer T, Carvalho B, Meijer GA, Herman JG, Smits KM, van Engeland M, and Melotte V
- Subjects
- Aged, Biomarkers, Tumor genetics, Central Nervous System metabolism, Colorectal Neoplasms metabolism, Epigenesis, Genetic genetics, Female, Humans, Male, Middle Aged, Promoter Regions, Genetic genetics, Reproducibility of Results, Sensitivity and Specificity, Colorectal Neoplasms diagnosis, Colorectal Neoplasms genetics, DNA Methylation genetics, Early Detection of Cancer methods, Epigenomics methods
- Abstract
Purpose: Colonoscopy and the fecal immunochemical test (FIT) are currently the most widely used screening modalities for colorectal cancer (CRC), however, both with their own limitations. Here we aim to identify and validate stool-based DNA methylation markers for the early detection of CRC and investigate the biological pathways prone to DNA methylation., Methods: DNA methylation marker discovery was performed using The Cancer Genome Atlas (TCGA) colon adenocarcinoma data set consisting of normal and primary colon adenocarcinoma tissue. The performance of the five best candidate markers and a previously identified marker, NDRG4, was evaluated on tissues and whole stool samples of healthy subjects and CRC patients using quantitative MSP assays. The results were compared and combined with FIT data. Finally, pathway and gene ontology enrichment analyses were performed using ToppFun, GOrilla and clusterProfiler., Results: GDNF, HAND2, SLC35F3, SNAP91 and SORCS1 were ranked as the best performing markers. Gene combinations of all five markers, NDRG4 and FIT were evaluated to establish the biomarker panel with the highest diagnostic potential, resulting in the identification of GDNF/SNAP91/NDRG4/FIT as the best performing marker panel. Pathway and gene ontology enrichment analyses revealed that genes associated with the nervous system were enriched in the set of best performing CRC-specific biomarkers., Conclusion: In silico discovery analysis using TCGA-derived data yielded a novel DNA-methylation-based assay for the early detection of CRC, potentially improving current screening modalities. Additionally, nervous system-related pathways were enriched in the identified genes, indicating an epigenetic regulation of neuronal genes in CRC.
- Published
- 2021
- Full Text
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47. Diagnostic DNA Methylation Biomarkers for Renal Cell Carcinoma: A Systematic Review.
- Author
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Lommen K, Vaes N, Aarts MJ, van Roermund JG, Schouten LJ, Oosterwijk E, Melotte V, Tjan-Heijnen VC, van Engeland M, and Smits KM
- Subjects
- Biomarkers, DNA Methylation, Diagnostic Tests, Routine, Humans, Reproducibility of Results, Carcinoma, Renal Cell diagnosis, Carcinoma, Renal Cell genetics, Kidney Neoplasms diagnosis, Kidney Neoplasms genetics
- Abstract
Context: The 5-yr survival of early-stage renal cell carcinoma (RCC) is approximately 93%, but once metastasised, the 5-yr survival plummets to 12%, indicating that early RCC detection is crucial to improvement in survival. DNA methylation biomarkers have been suggested to be of potential diagnostic value; however, their current state of clinical translation is unclear and a comprehensive overview is lacking., Objective: To systematically review and summarise all literature regarding diagnostic DNA methylation biomarkers for RCC., Evidence Acquisition: We performed a systematic literature review of PubMed, EMBASE, Medline, and Google Scholar up to January 2019, according to the Preferred Reporting Items for Systematic Review and Meta-Analysis of Diagnostic Test Accuracy Studies (PRISMA-DTA) guidelines. Included studies were scored according to the Standards for Reporting of Diagnostic Accuracy Studies (STARD) criteria. Forest plots were generated to summarise diagnostic performance of all biomarkers. Level of evidence (LoE) and potential risk of bias were determined for all included studies., Evidence Synthesis: After selection, 19 articles reporting on 44 diagnostic DNA methylation biomarkers and 11 multimarker panels were included; however, only 15 biomarkers were independently validated. STARD scores varied from 4 to 13 out of 23 points, with a median of 10 points. Large variation in subgroups, methods, and primer locations was observed. None of the reported biomarkers exceeded LoE III, and the majority of studies reported inadequately., Conclusions: None of the reported biomarkers exceeded LoE III, indicating their limited clinical utility. Moreover, study reproducibility and further development of these RCC biomarkers are greatly hampered by inadequate reporting., Patient Summary: In this report, we reviewed whether specific biomarkers could be used to diagnose the most common form of kidney cancer. We conclude that due to limited evidence and reporting inconsistencies, none of these biomarkers can be used in clinical practice, and further development towards clinical use is hindered., (Copyright © 2019 The Authors. Published by Elsevier B.V. All rights reserved.)
- Published
- 2021
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48. The Emerging Role of Nerves and Glia in Colorectal Cancer.
- Author
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Schonkeren SL, Thijssen MS, Vaes N, Boesmans W, and Melotte V
- Abstract
The role of the nervous system as a contributor in the tumor microenvironment has been recognized in different cancer types, including colorectal cancer (CRC). The gastrointestinal tract is a highly innervated organ system, which is not only innervated by the autonomic nervous system, but also contains an extensive nervous system of its own; the enteric nervous system (ENS). The ENS is important for gut function and homeostasis by regulating processes such as fluid absorption, blood flow, and gut motility. Dysfunction of the ENS has been linked with multiple gastrointestinal diseases, such as Hirschsprung disease and inflammatory bowel disease, and even with neurodegenerative disorders. How the extrinsic and intrinsic innervation of the gut contributes to CRC is not fully understood, although a mutual relationship between cancer cells and nerves has been described. Nerves enhance cancer progression through the secretion of neurotransmitters and neuropeptides, and cancer cells are capable of stimulating nerve growth. This review summarizes and discusses the nervous system innervation of the gastrointestinal tract and how it can influence carcinogenesis, and vice versa. Lastly, the therapeutic potential of these novel insights is discussed.
- Published
- 2021
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49. Histological intratumoral heterogeneity in pretreatment esophageal cancer biopsies predicts survival benefit from neoadjuvant chemotherapy: results from the UK MRC OE02 trial.
- Author
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Davarzani N, Hewitt LC, Hale MD, Melotte V, Nankivell M, Hutchins GGA, Cunningham D, Allum WH, Langley RE, Jolani S, and Grabsch HI
- Subjects
- Biopsy, Chemotherapy, Adjuvant, Humans, Prognosis, United Kingdom, Esophageal Neoplasms drug therapy, Neoadjuvant Therapy
- Abstract
Despite the use of multimodal treatment, survival of esophageal cancer (EC) patients remains poor. One proposed explanation for the relatively poor response to cytotoxic chemotherapy is intratumor heterogeneity. The aim was to establish a statistical model to objectively measure intratumor heterogeneity of the proportion of tumor (IHPoT) and to use this newly developed method to measure IHPoT in the pretreatment biopsies from from EC patients recruited to the OE02 trial. A statistical mixed effect model (MEM) was established for estimating IHPoT based on variation in hematoxylin/eosin (HE) stained pretreatment biopsy pieces from the same individual in 218 OE02 trial patients (103 treated by chemotherapy and surgery (chemo+surgery); 115 patients treated by surgery alone). The relationship between IHPoT, prognosis, chemotherapy survival benefit, and clinicopathological variables was assessed. About 97 (44.5%) and 121 (55.5%) ECs showed high and low IHPoT, respectively. There was no significant difference in IHPoT between surgery (median [range], 0.1637 [0-3.17]) and chemo+surgery (median [range], 0.1692 [0-2.69]) patients (P = 0.43). Chemo+surgery patients with low IHPoT had a significantly longer survival than surgery patients (HR = 1.81, 95% CI: 1.20-2.75, P = 0.005). There was no survival difference between chemo+surgery and surgery patients with high IHPoT (HR = 1.15, 95% CI: 0.72-1.81, P = 0.566). This is the first study suggesting that IHPoT measured in the pretreatment biopsy can predict chemotherapy survival benefit in EC patients. IHPoT may represent a clinically useful biomarker for patient treatment stratification. Future studies should determine if pathologists can reliably estimate IHPoT., (© The Author(s) 2020. Published by Oxford University Press on behalf of International Society for Diseases of the Esophagus. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.)
- Published
- 2020
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50. Corrigendum: Chronic Intra-Uterine Ureaplasma parvum Infection Induces Injury of the Enteric Nervous System in Ovine Fetuses.
- Author
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Heymans C, de Lange IH, Hütten MC, Lenaerts K, de Ruijter NJE, Kessels LCGA, Rademakers G, Melotte V, Boesmans W, Saito M, Usuda H, Stock SJ, Spiller OB, Beeton ML, Payne MS, Kramer BW, Newnham JP, Jobe AH, Kemp MW, van Gemert WG, and Wolfs TGAM
- Abstract
[This corrects the article DOI: 10.3389/fimmu.2020.00189.]., (Copyright © 2020 Heymans, de Lange, Hütten, Lenaerts, de Ruijter, Kessels, Rademakers, Melotte, Boesmans, Saito, Usuda, Stock, Spiller, Beeton, Payne, Kramer, Newnham, Jobe, Kemp, van Gemert and Wolfs.)
- Published
- 2020
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