174 results on '"Melissa A. Holmes"'
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2. PREVALENCE AND CORRELATES OF WHITE MATTER HYPERINTENSITIES IN ROYAL CANADIAN AIRFORCE PILOTS AND AIRCREW
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Joel Ramirez, Oshin Vartanian, Melissa F. Holmes, Miriam Palmer, Christopher J.M. Scott, Shawn G. Rhind, Gary Gray, Sandra E. Black, and Joan Saary
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Specialties of internal medicine ,RC581-951 ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Published
- 2024
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3. White matter hyperintensities and smaller cortical thickness are associated with neuropsychiatric symptoms in neurodegenerative and cerebrovascular diseases
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Miracle Ozzoude, Brenda Varriano, Derek Beaton, Joel Ramirez, Sabrina Adamo, Melissa F. Holmes, Christopher J. M. Scott, Fuqiang Gao, Kelly M. Sunderland, Paula McLaughlin, Maged Goubran, Donna Kwan, Angela Roberts, Robert Bartha, Sean Symons, Brian Tan, Richard H. Swartz, Agessandro Abrahao, Gustavo Saposnik, Mario Masellis, Anthony E. Lang, Connie Marras, Lorne Zinman, Christen Shoesmith, Michael Borrie, Corinne E. Fischer, Andrew Frank, Morris Freedman, Manuel Montero-Odasso, Sanjeev Kumar, Stephen Pasternak, Stephen C. Strother, Bruce G. Pollock, Tarek K. Rajji, Dallas Seitz, David F. Tang-Wai, John Turnbull, Dar Dowlatshahi, Ayman Hassan, Leanne Casaubon, Jennifer Mandzia, Demetrios Sahlas, David P. Breen, David Grimes, Mandar Jog, Thomas D. L. Steeves, Stephen R. Arnott, Sandra E. Black, Elizabeth Finger, Jennifer Rabin, ONDRI Investigators, and Maria Carmela Tartaglia
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White matter hyperintensities ,Cortical thickness ,Neuropsychiatric symptoms ,Neurodegenerative disease ,Cerebrovascular disease ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract Background Neuropsychiatric symptoms (NPS) are a core feature of most neurodegenerative and cerebrovascular diseases. White matter hyperintensities and brain atrophy have been implicated in NPS. We aimed to investigate the relative contribution of white matter hyperintensities and cortical thickness to NPS in participants across neurodegenerative and cerebrovascular diseases. Methods Five hundred thirteen participants with one of these conditions, i.e. Alzheimer’s Disease/Mild Cognitive Impairment, Amyotrophic Lateral Sclerosis, Frontotemporal Dementia, Parkinson’s Disease, or Cerebrovascular Disease, were included in the study. NPS were assessed using the Neuropsychiatric Inventory – Questionnaire and grouped into hyperactivity, psychotic, affective, and apathy subsyndromes. White matter hyperintensities were quantified using a semi-automatic segmentation technique and FreeSurfer cortical thickness was used to measure regional grey matter loss. Results Although NPS were frequent across the five disease groups, participants with frontotemporal dementia had the highest frequency of hyperactivity, apathy, and affective subsyndromes compared to other groups, whilst psychotic subsyndrome was high in both frontotemporal dementia and Parkinson’s disease. Results from univariate and multivariate results showed that various predictors were associated with neuropsychiatric subsyndromes, especially cortical thickness in the inferior frontal, cingulate, and insula regions, sex(female), global cognition, and basal ganglia-thalamus white matter hyperintensities. Conclusions In participants with neurodegenerative and cerebrovascular diseases, our results suggest that smaller cortical thickness and white matter hyperintensity burden in several cortical-subcortical structures may contribute to the development of NPS. Further studies investigating the mechanisms that determine the progression of NPS in various neurodegenerative and cerebrovascular diseases are needed.
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- 2023
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4. Creating Equitable Spaces for All Learners: Leveraging Community Expertise through Situationally Responsive Instructional Conversations
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Melissa A. Holmes
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This qualitative study utilized positive discourse analysis (PDA) to explore the classroom discourse practices of three grade-level teachers at a highly diverse school. The purpose of the study was to investigate ways elementary teachers who employ biography-driven instruction (BDI) (e.g., Herrera, 2016) use discourse to invite and nurture student willingness to share about and maximize the sociocultural and linguistic dimensions of their biographies. The research questions guided investigation of: (1) formal text properties of instructional conversation (ICs), (2) ways the social practices of the classroom influenced the discourse, and (3) institutional factors that challenged and supported use of culturally responsive/sustaining discourse practices. Two primary sources of data included video of classroom instruction and two-part individual interviews. The interviews included video elicitation, which supported analysis of IC texts created from eleven selected episodes of IC. They also incorporated use of a semi-structured interview protocol to support exploration of institutional factors that influenced the three participants' use of culturally responsive/sustaining discourse. Additional sources of data (e.g., documents, questionnaire, analytic memos) provided context regarding the members of the classroom learning communities and supported data analysis. This study employed Fairclough's (1989) three-part analysis progression of "description" (exploring aspects of the text itself), "interpretation" (focusing on the relationship between the situational context and the text), and "explanation" (making connections to broader institutional and societal contexts). Findings and conclusions revealed that culturally responsive/sustaining discourse: (a) fostered relationships among members of the classroom community, (b) positioned students as knowledgeable and capable, (c) created a risk-free space for sharing knowledge and ideas, and (d) fostered equitable participation of all students. Social practices of the classroom influenced the discourse in multiple ways and indicated that: (a) use of mediation tools scaffolded engagement and language use, (b) use of multiple grouping structures fostered student talk, and (c) situationally attending to what students produced created opportunities to elicit and leverage assets. Building-level leadership was the most influential factor on the teachers' use of culturally responsive/sustaining discourse. The explanation phase of analysis (Fairclough, 1989) also included exploration of social determinants that influenced the discourse as well as the effects of the discourse in relation to ongoing struggles at situational, institutional, and societal levels. Many of the social determinants reflected hegemonic influences (e.g., cultural, linguistic) and deficit perspectives. Others were related to typical interaction patters found in U.S. classrooms. Transformative influences of the IC discourse often revealed aspects of an asset perspective on culturally and linguistically students and emphasized pluralism (e.g., linguistic, epistemological). The teachers' ICs illustrated how educators can create educational spaces that foster students' sense of belonging and positive self-concept. The episodes further highlighted ways teachers can collaborate with students to leverage the expertise of all members of the classroom community toward collective learning and success. Processes that ensured equitable participation among all members of the community also were identified as transformative influences. [The dissertation citations contained here are published with the permission of ProQuest LLC. Further reproduction is prohibited without permission. Copies of dissertations may be obtained by Telephone (800) 1-800-521-0600. Web page: http://www.proquest.com/en-US/products/dissertations/individuals.shtml.]
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- 2022
5. Postnatal oogenesis leads to an exceptionally large ovarian reserve in naked mole-rats
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Miguel Angel Brieño-Enríquez, Mariela Faykoo-Martinez, Meagan Goben, Jennifer K. Grenier, Ashley McGrath, Alexandra M. Prado, Jacob Sinopoli, Kate Wagner, Patrick T. Walsh, Samia H. Lopa, Diana J. Laird, Paula E. Cohen, Michael D. Wilson, Melissa M. Holmes, and Ned J. Place
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Science - Abstract
Female naked mole rats are long lived and show little or no decline in fertility over their lifespan. Here Brieño-Enríquez et al., demonstrate that naked mole-rats establish an exceptionally large ovarian reserve and undergo postnatal oogenesis.
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- 2023
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6. Improved Segmentation of the Intracranial and Ventricular Volumes in Populations with Cerebrovascular Lesions and Atrophy Using 3D CNNs.
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Emmanuel E. Ntiri, Melissa F. Holmes, Parisa Mojiri Forooshani, Joel Ramirez, Fuqiang Gao, Miracle Ozzoude, Sabrina Adamo, Christopher J. M. Scott, Dar Dowlatshahi, Jane M. Lawrence-Dewar, Donna Kwan, Anthony E. Lang, Sean Symons, Robert Bartha, Stephen C. Strother, Jean-Claude Tardif, Mario Masellis, Richard H. Swartz, Alan R. Moody, Sandra E. Black, and Maged Goubran
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- 2021
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7. Naked Mole-Rat Social Phenotypes Vary in Investigative and Aggressive Behavior in a Laboratory Partner Preference Paradigm
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Ilapreet Toor, Rashoun Maynard, Xinye Peng, Annaliese K. Beery, and Melissa M. Holmes
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affiliation ,aggression ,behavioral phenotype ,eusocial ,naked mole-rat ,partner preference ,Evolution ,QH359-425 ,Ecology ,QH540-549.5 - Abstract
Here we employed the partner preference test (PPT) to examine how naked mole-rat non-breeding individuals of different behavioral phenotypes make social decisions. Naked mole-rats from six colonies were classified into three behavioral phenotypes (soldiers, dispersers, and workers) using a battery of behavioral tests. They then participated in a 3 h long PPT, where they could freely interact with a tethered familiar or tethered unfamiliar conspecific. By comparing the three behavioral phenotypes, we tested the hypothesis that the PPT can be used to interrogate social decision-making in this species, revealing individual differences in behavior that are consistent with discrete social phenotypes. We also tested whether a shorter, 10 min version of the paradigm is sufficient to capture group differences in behavior. Overall, soldiers had higher aggression scores toward unfamiliar conspecifics than both workers and dispersers at the 10 min and 3 h comparison times. At the 10 min comparison time, workers showed a stronger preference for the familiar animal’s chamber, as well as for investigating the familiar conspecific, compared to both dispersers and soldiers. At the 3 h time point, no phenotype differences were seen with chamber or investigation preference scores. Overall, all phenotypes spent more time in chambers with another animal vs. being alone. Use of the PPT in a comparative context has demonstrated that the test identifies species and group differences in affiliative and aggressive behavior toward familiar and unfamiliar animals, revealing individual differences in social decision-making and, importantly, capturing aspects of species-specific social organization seen in nature.
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- 2022
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8. Protracted neuronal maturation in a long-lived, highly social rodent
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Mariela Faykoo-Martinez, Troy Collins, Diana Peragine, Manahil Malik, Fiza Javed, Matthew Kolisnyk, Justine Ziolkowski, Imaan Jeewa, Arthur H. Cheng, Christopher Lowden, Brittany Mascarenhas, Hai-Ying Mary Cheng, and Melissa M. Holmes
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Medicine ,Science - Abstract
Naked mole-rats are a long-lived rodent species (current lifespan >37 years) and an increasingly popular biomedical model. Naked mole-rats exhibit neuroplasticity across their long lifespan. Previous studies have begun to investigate their neurogenic patterns. Here, we test the hypothesis that neuronal maturation is extended in this long-lived rodent. We characterize cell proliferation and neuronal maturation in established rodent neurogenic regions over 12 months following seven days of consecutive BrdU injection. Given that naked mole-rats are eusocial (high reproductive skew where only a few socially-dominant individuals reproduce), we also looked at proliferation in brain regions relevant to the social-decision making network. Finally, we measured co-expression of EdU (newly-born cells), DCX (immature neuron marker), and NeuN (mature neuron marker) to assess the timeline of neuronal maturation in adult naked mole-rats. This work reaffirms the subventricular zone as the main source of adult cell proliferation and suggests conservation of the rostral migratory stream in this species. Our profiling of socially-relevant brain regions suggests that future work which manipulates environmental context can unveil how newly-born cells integrate into circuitry and facilitate adult neuroplasticity. We also find naked mole-rat neuronal maturation sits at the intersection of rodents and long-lived, non-rodent species: while neurons can mature by 3 weeks (rodent-like), most neurons mature at 5 months and hippocampal neurogenic levels are low (like long-lived species). These data establish a timeline for future investigations of longevity- and socially-related manipulations of naked mole-rat adult neurogenesis.
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- 2022
9. Cortical Thickness Estimation in Individuals With Cerebral Small Vessel Disease, Focal Atrophy, and Chronic Stroke Lesions
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Miracle Ozzoude, Joel Ramirez, Pradeep Reddy Raamana, Melissa F. Holmes, Kirstin Walker, Christopher J. M. Scott, Fuqiang Gao, Maged Goubran, Donna Kwan, Maria C. Tartaglia, Derek Beaton, Gustavo Saposnik, Ayman Hassan, Jane Lawrence-Dewar, Dariush Dowlatshahi, Stephen C. Strother, Sean Symons, Robert Bartha, Richard H. Swartz, and Sandra E. Black
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cortical thickness ,cerebrovascular disease ,stroke ,cerebral small vessel disease ,FreeSurfer ,ONDRI ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
BackgroundRegional changes to cortical thickness in individuals with neurodegenerative and cerebrovascular diseases (CVD) can be estimated using specialized neuroimaging software. However, the presence of cerebral small vessel disease, focal atrophy, and cortico-subcortical stroke lesions, pose significant challenges that increase the likelihood of misclassification errors and segmentation failures.PurposeThe main goal of this study was to examine a correction procedure developed for enhancing FreeSurfer’s (FS’s) cortical thickness estimation tool, particularly when applied to the most challenging MRI obtained from participants with chronic stroke and CVD, with varying degrees of neurovascular lesions and brain atrophy.MethodsIn 155 CVD participants enrolled in the Ontario Neurodegenerative Disease Research Initiative (ONDRI), FS outputs were compared between a fully automated, unmodified procedure and a corrected procedure that accounted for potential sources of error due to atrophy and neurovascular lesions. Quality control (QC) measures were obtained from both procedures. Association between cortical thickness and global cognitive status as assessed by the Montreal Cognitive Assessment (MoCA) score was also investigated from both procedures.ResultsCorrected procedures increased “Acceptable” QC ratings from 18 to 76% for the cortical ribbon and from 38 to 92% for tissue segmentation. Corrected procedures reduced “Fail” ratings from 11 to 0% for the cortical ribbon and 62 to 8% for tissue segmentation. FS-based segmentation of T1-weighted white matter hypointensities were significantly greater in the corrected procedure (5.8 mL vs. 15.9 mL, p < 0.001). The unmodified procedure yielded no significant associations with global cognitive status, whereas the corrected procedure yielded positive associations between MoCA total score and clusters of cortical thickness in the left superior parietal (p = 0.018) and left insula (p = 0.04) regions. Further analyses with the corrected cortical thickness results and MoCA subscores showed a positive association between left superior parietal cortical thickness and Attention (p < 0.001).ConclusionThese findings suggest that correction procedures which account for brain atrophy and neurovascular lesions can significantly improve FS’s segmentation results and reduce failure rates, thus maximizing power by preventing the loss of our important study participants. Future work will examine relationships between cortical thickness, cerebral small vessel disease, and cognitive dysfunction due to neurodegenerative disease in the ONDRI study.
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- 2020
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10. Ontario Neurodegenerative Disease Research Initiative (ONDRI): Structural MRI Methods and Outcome Measures
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Joel Ramirez, Melissa F. Holmes, Christopher J. M. Scott, Miracle Ozzoude, Sabrina Adamo, Gregory M. Szilagyi, Maged Goubran, Fuqiang Gao, Stephen R. Arnott, Jane M. Lawrence-Dewar, Derek Beaton, Stephen C. Strother, Douglas P. Munoz, Mario Masellis, Richard H. Swartz, Robert Bartha, Sean Symons, Sandra E. Black, and The ONDRI Investigators
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MRI ,Alzheimer ,Parkinson ,amyotrophic lateral sclerosis ,frontotemporal dementia ,cerebrovascular disease ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
The Ontario Neurodegenerative Research Initiative (ONDRI) is a 3 years multi-site prospective cohort study that has acquired comprehensive multiple assessment platform data, including 3T structural MRI, from neurodegenerative patients with Alzheimer's disease, mild cognitive impairment, Parkinson's disease, amyotrophic lateral sclerosis, frontotemporal dementia, and cerebrovascular disease. This heterogeneous cross-section of patients with complex neurodegenerative and neurovascular pathologies pose significant challenges for standard neuroimaging tools. To effectively quantify regional measures of normal and pathological brain tissue volumes, the ONDRI neuroimaging platform implemented a semi-automated MRI processing pipeline that was able to address many of the challenges resulting from this heterogeneity. The purpose of this paper is to serve as a reference and conceptual overview of the comprehensive neuroimaging pipeline used to generate regional brain tissue volumes and neurovascular marker data that will be made publicly available online.
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- 2020
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11. Increased brain volumetric measurement precision from multi-site 3D T1-weighted 3 T magnetic resonance imaging by correcting geometric distortions
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Jennifer Mandzia, Miracle Ozzoude, Sandra E. Black, Sean P. Symons, Robert Bartha, Igor Solovey, Ondri Investigators, Demetrios J. Sahlas, Stephen R. Arnott, Tom Gee, Christopher J.M. Scott, Dar Dowlatshahi, Dana N. Broberg, Gustavo Saposnik, Nuwan D. Nanayakkara, Richard H. Swartz, Shuai Liang, Stephen C. Strother, Melissa F. Holmes, Sujeevini Sujanthan, Joel Ramirez, Ayman Hassan, Gregory M. Szilagyi, Courtney Berezuk, Seyyed M. H. Haddad, Mojdeh Zamyadi, Vladimir S. Fonov, Sabrina Adamo, Leanne K. Casaubon, and Athena E. Theyers
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Physics ,Scanner ,medicine.diagnostic_test ,Phantoms, Imaging ,Coefficient of variation ,Biomedical Engineering ,Biophysics ,Isocenter ,Brain ,Magnetic resonance imaging ,Volumetric measurement ,Magnetic Resonance Imaging ,Standard deviation ,Imaging phantom ,Distortion ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,Biomedical engineering - Abstract
Magnetic resonance imaging (MRI) scanner-specific geometric distortions may contribute to scanner induced variability and decrease volumetric measurement precision for multi-site studies. The purpose of this study was to determine whether geometric distortion correction increases the precision of brain volumetric measurements in a multi-site multi-scanner study. Geometric distortion variation was quantified over a one-year period at 10 sites using the distortion fields estimated from monthly 3D T1-weighted MRI geometrical phantom scans. The variability of volume and distance measurements were quantified using synthetic volumes and a standard quantitative MRI (qMRI) phantom. The effects of geometric distortion corrections on MRI derived volumetric measurements of the human brain were assessed in two subjects scanned on each of the 10 MRI scanners and in 150 subjects with cerebrovascaular disease (CVD) acquired across imaging sites.Geometric distortions were found to vary substantially between different MRI scanners but were relatively stable on each scanner over a one-year interval. Geometric distortions varied spatially, increasing in severity with distance from the magnet isocenter. In measurements made with the qMRI phantom, the geometric distortion correction decreased the standard deviation of volumetric assessments by 35% and distance measurements by 42%. The average coefficient of variance decreased by 16% in gray matter and white matter volume estimates in the two subjects scanned on the 10 MRI scanners. Geometric distortion correction using an up-to-date correction field is recommended to increase precision in volumetric measurements made from MRI images.
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- 2022
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12. miR-132/212 Modulates Seasonal Adaptation and Dendritic Morphology of the Central Circadian Clock
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Lucia Mendoza-Viveros, Cheng-Kang Chiang, Jonathan L.K. Ong, Sara Hegazi, Arthur H. Cheng, Pascale Bouchard-Cannon, Michael Fana, Christopher Lowden, Peng Zhang, Béatrice Bothorel, Matthew G. Michniewicz, Stephen T. Magill, Melissa M. Holmes, Richard H. Goodman, Valérie Simonneaux, Daniel Figeys, and Hai-Ying M. Cheng
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Biology (General) ,QH301-705.5 - Abstract
Summary: The central circadian pacemaker, the suprachiasmatic nucleus (SCN), encodes day length information by mechanisms that are not well understood. Here, we report that genetic ablation of miR-132/212 alters entrainment to different day lengths and non-24 hr day-night cycles, as well as photoperiodic regulation of Period2 expression in the SCN. SCN neurons from miR-132/212-deficient mice have significantly reduced dendritic spine density, along with altered methyl CpG-binding protein (MeCP2) rhythms. In Syrian hamsters, a model seasonal rodent, day length regulates spine density on SCN neurons in a melatonin-independent manner, as well as expression of miR-132, miR-212, and their direct target, MeCP2. Genetic disruption of Mecp2 fully restores the level of dendritic spines of miR-132/212-deficient SCN neurons. Our results reveal that, by regulating the dendritic structure of SCN neurons through a MeCP2-dependent mechanism, miR-132/212 affects the capacity of the SCN to encode seasonal time. : Seasonal adaptation is believed to require plasticity in the SCN, although the mechanisms are unclear. Mendoza-Viveros et al. report that miR-132/212 modulates dendritic protrusion density and photoperiodic adaptation in mice and hamsters, by regulating the expression of MeCP2, and downstream BDNF and mTOR signaling. Keywords: circadian rhythms, seasonal timekeeping, suprachiasmatic nucleus, microRNA, miR-132/212, entrainment, MeCP2, dendritic morphology, structural plasticity, spinogenesis
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- 2017
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13. Bridging Sex and Gender in Neuroscience by Shedding a priori Assumptions of Causality
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Melissa M. Holmes and D. Ashley Monks
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behavioral ecology ,definition ,gender ,polymorphism ,sex ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Published
- 2019
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14. Comparison of quality control methods for automated diffusion tensor imaging analysis pipelines.
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Seyyed M H Haddad, Christopher J M Scott, Miracle Ozzoude, Melissa F Holmes, Stephen R Arnott, Nuwan D Nanayakkara, Joel Ramirez, Sandra E Black, Dar Dowlatshahi, Stephen C Strother, Richard H Swartz, Sean Symons, Manuel Montero-Odasso, ONDRI Investigators, and Robert Bartha
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Medicine ,Science - Abstract
The processing of brain diffusion tensor imaging (DTI) data for large cohort studies requires fully automatic pipelines to perform quality control (QC) and artifact/outlier removal procedures on the raw DTI data prior to calculation of diffusion parameters. In this study, three automatic DTI processing pipelines, each complying with the general ENIGMA framework, were designed by uniquely combining multiple image processing software tools. Different QC procedures based on the RESTORE algorithm, the DTIPrep protocol, and a combination of both methods were compared using simulated ground truth and artifact containing DTI datasets modeling eddy current induced distortions, various levels of motion artifacts, and thermal noise. Variability was also examined in 20 DTI datasets acquired in subjects with vascular cognitive impairment (VCI) from the multi-site Ontario Neurodegenerative Disease Research Initiative (ONDRI). The mean fractional anisotropy (FA), mean diffusivity (MD), axial diffusivity (AD), and radial diffusivity (RD) were calculated in global brain grey matter (GM) and white matter (WM) regions. For the simulated DTI datasets, the measure used to evaluate the performance of the pipelines was the normalized difference between the mean DTI metrics measured in GM and WM regions and the corresponding ground truth DTI value. The performance of the proposed pipelines was very similar, particularly in FA measurements. However, the pipeline based on the RESTORE algorithm was the most accurate when analyzing the artifact containing DTI datasets. The pipeline that combined the DTIPrep protocol and the RESTORE algorithm produced the lowest standard deviation in FA measurements in normal appearing WM across subjects. We concluded that this pipeline was the most robust and is preferred for automated analysis of multisite brain DTI data.
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- 2019
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15. Introduction to the Special Issue 'Hormones and Hierarchies'
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Phoebe D. Edwards and Melissa M. Holmes
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Behavioral Neuroscience ,Endocrinology ,Endocrine and Autonomic Systems - Published
- 2023
16. Oxytocin Manipulation Alters Neural Activity in Response to Social Stimuli in Eusocial Naked Mole-Rats
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Mariela Faykoo-Martinez, Skyler J. Mooney, and Melissa M. Holmes
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social decision-making network ,oxytocin ,naked mole-rat ,eusociality ,immediate early gene ,social behavior ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
The social decision-making network (SDMN) is a conserved neural circuit that modulates a range of social behaviors via context-specific patterns of activation that may be controlled in part by oxytocinergic signaling. We have previously characterized oxytocin’s (OT) influence on prosociality in the naked mole-rat, a eusocial mammalian species, and its altered neural distribution between animals of differing social status. Here, we asked two questions: (1) do patterns of activation in the SDMN vary by social context and (2) is functional connectivity of the SDMN altered by OT manipulation? Adult subordinate naked mole-rats were exposed to one of three types of stimuli (three behavioral paradigms: familiar adult conspecific, unfamiliar adult conspecific, or familiar pups) while manipulating OT (three manipulations: saline, OT, or OT antagonist). Immediate early gene c-Fos activity was quantified using immunohistochemistry across SDMN regions. Network analyses indicated that the SDMN is conserved in naked mole-rats and functions in a context-dependent manner. Specific brain regions were recruited with each behavioral paradigm suggesting a role for the nucleus accumbens in social valence and sociosexual interaction, the prefrontal cortex in assessing/establishing social dominance, and the hippocampus in pup recognition. Furthermore, while OT manipulation was generally disruptive to coordinated neural activity, the specific effects were context-dependent supporting the hypothesis that oxytocinergic signaling promotes context appropriate social behaviors by modulating co-ordinated activity of the SDMN.
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- 2018
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17. Sex- and brain region-specific patterns of gene expression associated with socially-mediated puberty in a eusocial mammal.
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Mariela Faykoo-Martinez, D Ashley Monks, Iva B Zovkic, and Melissa M Holmes
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Medicine ,Science - Abstract
The social environment can alter pubertal timing through neuroendocrine mechanisms that are not fully understood; it is thought that stress hormones (e.g., glucocorticoids or corticotropin-releasing hormone) influence the hypothalamic-pituitary-gonadal axis to inhibit puberty. Here, we use the eusocial naked mole-rat, a unique species in which social interactions in a colony (i.e. dominance of a breeding female) suppress puberty in subordinate animals. Removing subordinate naked mole-rats from this social context initiates puberty, allowing for experimental control of pubertal timing. The present study quantified gene expression for reproduction- and stress-relevant genes acting upstream of gonadotropin-releasing hormone in brain regions with reproductive and social functions in pre-pubertal, post-pubertal, and opposite sex-paired animals (which are in various stages of pubertal transition). Results indicate sex differences in patterns of neural gene expression. Known functions of genes in brain suggest stress as a key contributing factor in regulating male pubertal delay. Network analysis implicates neurokinin B (Tac3) in the arcuate nucleus of the hypothalamus as a key node in this pathway. Results also suggest an unappreciated role for the nucleus accumbens in regulating puberty.
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- 2018
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18. The Trajectory of the Invisible Teacher
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Socorro G. Herrera, Kevin G. Murry, and Melissa A. Holmes
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- 2022
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19. Experiences of training and delivery of Physical therapy informed by Acceptance and Commitment Therapy (PACT): a longitudinal qualitative study
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Marie K. March, Lance M. McCracken, Vari Wileman, Emma Godfrey, Massimo Barcellona, Melissa Galea Holmes, Duncan Critchley, Sandra Noonan, Rona Moss-Morris, and Sam Norton
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Adult ,030506 rehabilitation ,medicine.medical_specialty ,media_common.quotation_subject ,Physical Therapy, Sports Therapy and Rehabilitation ,Pact ,Acceptance and commitment therapy ,Experiential learning ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,Intervention (counseling) ,medicine ,Humans ,030212 general & internal medicine ,Acceptance and Commitment Therapy ,Physical Therapy Modalities ,Qualitative Research ,media_common ,Flexibility (personality) ,Physical Therapists ,Physical therapy ,Female ,0305 other medical science ,Psychology ,Low Back Pain ,Psychosocial ,Autonomy ,Qualitative research - Abstract
Objectives Physiotherapy informed by Acceptance and Commitment Therapy (PACT) is a novel intervention that is related to improved disability and functioning in people with chronic lowback pain. This study explored physiotherapists experiences over time of the PACT training programme and intervention delivery. Design A longitudinal qualitative study using semi-structured, in-depth, individual interviews at three time points was conducted. Methods A phenomenological approach underpinned the methods. Interviews followed topic-guides developed a priori. Transcribed interviews were coded inductively to generate themes. Data were member checked by participants and validated by two researchers. Participants Eight clinical physiotherapists from three secondary care centres in the United Kingdom (n = 5 female; age, 24 to 44 years; duration of practice, 3 to 14 years) were included. Results Five themes emerged from the data. Experiential learning techniques were challenging but valued because they bridged theoretical principles and concepts with practice. Ongoing individual and group supervision was beneficial, but required tailoring and tapering. PACT delivery extended physiotherapy skills and practice, including techniques that acknowledged and addressed patient treatment expectations. With experience, participants desired greater flexibility and autonomy to tailor PACT delivery. Conclusions PACT training and delivery were acceptable to physiotherapists. Existing skills were developed and additional, applicable approaches were provided that addressed psychosocial and behavioural aspects of chronic low back pain.
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- 2021
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20. Solving the Neurogenesis Puzzle: Looking for Pieces Outside the Traditional Box
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Mariela Faykoo-Martinez, Ilapreet Toor, and Melissa M. Holmes
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comparative ,neuroethology ,neurogenesis ,reproduction ,social behavior ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
The vast majority of what is considered fact about adult neurogenesis comes from research on laboratory mice and rats: where it happens, how it works, what it does. However, this relative exclusive focus on two rodent species has resulted in a bias on how we think about adult neurogenesis. While it might not prevent us from making conclusions about the evolutionary significance of the process or even prevent us from generalizing to diverse mammals, it certainly does not help us achieve these outcomes. Here, we argue that there is every reason to expect striking species differences in adult neurogenesis: where it happens, how it works, what it does. Species-specific adaptations in brain and behavior are paramount to survival and reproduction in diverse ecological niches and it is naive to think adult neurogenesis escaped these evolutionary pressures. A neuroethological approach to the study of adult neurogenesis is essential for a comprehensive understanding of the phenomenon. Furthermore, most of us are guilty of making strong assertions about our data in order to have impact yet this ultimately creates bias in how work is performed, interpreted, and applied. By taking a step back and actually placing our results in a much larger, non-biomedical context, we can help to reduce dogmatic thinking and create a framework for discovery.
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- 2017
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21. White Matter Hyperintensities and Cortical Atrophy are associated with Neuropsychiatric Symptoms in Neurodegenerative and Cerebrovascular Diseases
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Miracle Ozzoude, Brenda Varriano, Derek Beaton, Joel Ramirez, Sabrina Adamo, Melissa F. Holmes, Christopher J.M. Scott, Fuqiang Gao, Kelly M. Sunderland, Paula McLaughlin, Maged Goubran, Donna Kwan, Angela Roberts, Robert Bartha, Sean Symons, Brian Tan, Richard H. Swartz, Agessandro Abrahao, Gustavo Saposnik, Mario Masellis, Anthony E. Lang, Connie Marras, Lorne Zinman, Christen Shoesmith, Michael Borrie, Corinne E. Fischer, Andrew Frank, Morris Freedman, Manuel Montero-Odasso, Sanjeev Kumar, Stephen Pasternak, Stephen C. Strother, Bruce G. Pollock, Tarek K. Rajji, Dallas Seitz, David F. Tang-Wai, John Turnbull, Dar Dowlatshahi, Ayman Hassan, Leanne Casaubon, Jennifer Mandzia, Demetrios Sahlas, David P. Breen, David Grimes, Mandar Jog, Thomas D.L. Steeves, Stephen R. Arnott, Sandra E. Black, Elizabeth Finger, Jennifer Rabin, ONDRI Investigators, and Maria Carmela Tartaglia
- Abstract
Background: Neuropsychiatric symptoms (NPS) are a core feature of most neurodegenerative and cerebrovascular diseases. White matter hyperintensities and brain atrophy have been implicated in NPS. We aimed to investigate the relative contribution of white matter hyperintensities and cortical atrophy to NPS in participants across neurodegenerative and cerebrovascular diseases. Methods: 513 participants with one of these conditions, i.e. Alzheimer’s Disease/Mild Cognitive Impairment, Amyotrophic Lateral Sclerosis, Frontotemporal Dementia, Parkinson’s Disease, or Cerebrovascular Disease were included in the study. NPS were assessed using the Neuropsychiatric Inventory – Questionnaire and grouped into hyperactivity, psychotic, affective, and apathy subsyndromes. White matter hyperintensities were quantified using a semi-automatic segmentation technique and FreeSurfer cortical thickness was used to measure regional grey matter atrophy. Results: Although NPS were frequent across the five disease groups, participants with Frontotemporal Dementia had the highest frequency of hyperactivity, apathy, and affective subsyndromes compared to other groups, whilst psychotic subsyndrome was high in both Frontotemporal Dementia and Parkinson’s Disease. Results from univariate and multivariate results showed that various predictors were associated with neuropsychiatric subsyndromes, especially cortical thickness in the inferior frontal, cingulate, and insula regions, sex(female), global cognition, and basal ganglia-thalamus white matter hyperintensities. Conclusions: In participants with neurodegenerative and cerebrovascular diseases, our results suggest that increased cortical atrophy and white matter hyperintensities burden in several cortical-subcortical structures may contribute to the development of NPS. Further studies investigating the mechanisms that determine the progression of NPS in various neurodegenerative and cerebrovascular diseases are needed.
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- 2022
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22. Colony but not social phenotype or status structures the gut bacteria of a eusocial mammal
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Connor R. Fitzpatrick, Ilapreet Toor, and Melissa M. Holmes
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Animal Science and Zoology ,Ecology, Evolution, Behavior and Systematics - Published
- 2022
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23. Improved Segmentation of the Intracranial and Ventricular Volumes in Populations with Cerebrovascular Lesions and Atrophy Using 3D CNNs
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Richard H. Swartz, Sabrina Adamo, Alan R. Moody, Maged Goubran, Donna Kwan, Mario Masellis, Fuqiang Gao, Robert Bartha, Parisa Mojiri Forooshani, Dar Dowlatshahi, Christopher J.M. Scott, Jane M. Lawrence-Dewar, Joel Ramirez, Miracle Ozzoude, Sandra E. Black, Sean P. Symons, Melissa F. Holmes, Emmanuel E. Ntiri, Jean-Claude Tardif, Stephen C. Strother, and Anthony E. Lang
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Conditional random field ,Brain atrophy ,Computer science ,Neuroimaging ,Convolutional neural network ,050105 experimental psychology ,030218 nuclear medicine & medical imaging ,Cerebral Ventricles ,03 medical and health sciences ,0302 clinical medicine ,Atrophy ,Ventricles ,Image Processing, Computer-Assisted ,Humans ,Medicine ,0501 psychology and cognitive sciences ,Segmentation ,Cognitive impairment ,Aged ,Image segmentation ,business.industry ,General Neuroscience ,Deep learning ,05 social sciences ,Pattern recognition ,medicine.disease ,Magnetic Resonance Imaging ,White matter hyperintensity ,Vascular lesions ,Medical Biophysics ,Total intracranial volume ,Neural Networks, Computer ,Artificial intelligence ,business ,030217 neurology & neurosurgery ,Software ,Information Systems - Abstract
Successful segmentation of the total intracranial vault (ICV) and ventricles is of critical importance when studying neurodegeneration through neuroimaging. We present iCVMapper and VentMapper, robust algorithms that use a convolutional neural network (CNN) to segment the ICV and ventricles from both single and multi-contrast MRI data. Our models were trained on a large dataset from two multi-site studies (N=528 subjects for ICV, N=501 for ventricular segmentation) consisting of older adults with varying degrees of cerebrovascular lesions and atrophy, which pose significant challenges for most segmentation approaches. The models were tested on 238 participants, including subjects with vascular cognitive impairment and high white matter hyperintensity burden. Two of the three test sets came from studies not used in the training dataset. We assessed our algorithms relative to four state-of-the-art ICV extraction methods (MONSTR, BET, Deep Extraction, FreeSurfer), as well as a ventricular segmentation tool (FreeSurfer). Our multi-contrast models outperformed other methods across all evaluation metrics, with average Dice coefficients of 0.98 and 0.94 for ICV and ventricular segmentation respectively. Both models were also the most time efficient, segmenting the structures in orders of magnitude faster than some of the other available methods. Our networks showed an increased accuracy with the use of a conditional random field (CRF) as a post-processing step. We further validated both segmentation models, highlighting their robustness to images with lower resolution and signal-to-noise ratio, compared to tested techniques. The pipeline and models are available at: https://icvmapp3r.readthedocs.io and https://ventmapp3r.readthedocs.io to enable further investigation of the roles of ICV and ventricles in relation to normal aging and neurodegeneration in large multi-site studies.
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- 2021
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24. Germ cell nests in adult ovaries and an unusually large ovarian reserve in the naked mole-rat
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Alexandra M Prado, David F. Albertini, Ned J. Place, Miguel A. Brieño-Enríquez, Mariela Faykoo-Martinez, and Melissa M. Holmes
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0301 basic medicine ,Embryology ,media_common.quotation_subject ,Longevity ,Zoology ,Fertility ,Biology ,Article ,03 medical and health sciences ,0302 clinical medicine ,Endocrinology ,medicine ,Animals ,Body Size ,Sexual maturity ,Ovarian Reserve ,Ovarian reserve ,Naked mole-rat ,media_common ,030219 obstetrics & reproductive medicine ,Mole Rats ,Ovary ,Obstetrics and Gynecology ,Cell Biology ,Fecundity ,biology.organism_classification ,Eusociality ,030104 developmental biology ,medicine.anatomical_structure ,Reproductive Medicine ,Oocytes ,Female ,Age of onset ,Germ cell - Abstract
The naked mole-rat (NMR, Heterocephalus glaber) is renowned for its eusociality and exceptionally long lifespan (> 30 y) relative to its small body size (35–40 g). A NMR phenomenon that has received far less attention is that females show no decline in fertility or fecundity into their third decade of life. The age of onset of reproductive decline in many mammalian species is closely associated with the number of germ cells remaining at the age of sexual maturity. We quantified ovarian reserve size in NMRs at the youngest age (6 months) when subordinate females can begin to ovulate after removal from the queen’s suppression. We then compared the NMR ovarian reserve size to values for 19 other mammalian species that were previously reported. The NMR ovarian reserve at 6 months of age is exceptionally large at 108,588 ± 69,890 primordial follicles, which is more than 10-fold larger than in mammals of a comparable size. We also observed germ cell nests in ovaries from 6-month-old NMRs, which is highly unusual since breakdown of germ cell nests and the formation of primordial follicles is generally complete by early postnatal life in other mammals. Additionally, we found germ cell nests in young adult NMRs between 1.25 and 3.75 years of age, in both reproductively activated and suppressed females. The unusually large NMR ovarian reserve provides one mechanism to account for this species’ protracted fertility. Whether germ cell nests in adult ovaries contribute to the NMR’s long reproductive lifespan remains to be determined.
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- 2021
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25. Hormones do not make the mole-rat: no steroid hormone signatures of subordinate behavioral phenotypes
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Ilapreet Toor, Mariela Faykoo-Martinez, Phoebe D. Edwards, Rudy Boonstra, and Melissa M. Holmes
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In some cooperatively breeding groups, individuals have distinct behavioral characteristics that are often stable and predictable across time. However, in others, like the eusocial naked mole-rat, evidence for behavioral phenotypes is ambiguous. Here, we study whether the naked mole-rat can be divided into discrete phenotypes and if circulating hormone levels underpin these differences. Naked mole-rat colonies consist of a single breeding female and dozens to hundreds of non-reproductive subordinates. The subordinates can potentially be divided into soldiers, who defend the colony; workers, who maintain it; and dispersers, who want to leave it. We established six colonies de novo, tracked them over three years, and assessed the behavior and hormone levels of the subordinates. We found that soldiers tended to be from earlier litters and were higher ranked compared to workers, whereas dispersers were distributed throughout litters and rankings. There was no difference in estradiol, testosterone, or dehydroepiandrosterone (DHEA) levels amongst phenotypes. Progesterone levels were higher in soldiers but this difference appeared to be driven by a few individuals. Principal component analysis demonstrated that soldiers separated into a discrete category relative to workers/dispersers, with the highest ranked loadings being age, weight, and testosterone levels. However, the higher testosterone in soldiers was correlated with large body size instead of strictly behavioral phenotype. Workers and dispersers have more overlap with each other and no hormonal differences. Thus the behavioral variation in subordinate naked mole-rats is likely not driven by circulating steroid hormone levels but rather stems from alternative neural and/or neuroendocrine mechanisms.
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- 2022
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26. TINC— A Method to Dissect Regulatory Complexes at Single-Locus Resolution— Reveals an Extensive Protein Complex at the Nanog Promoter
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Cheng Huang, Jaber Firas, Partha Pratim Das, Yu Bo Yang Sun, Anja S Knaupp, Joseph Chen, Melissa L. Holmes, Christian M. Nefzger, Fernando J. Rossello, Pratibha Tripathi, Trung V. Nguyen, Ralf B. Schittenhelm, Sue Mei Lim, Kayla Wong, Xiaodong Liu, Monika Mohenska, Jody J. Haigh, Jan Schröder, Ryan Lister, Jahnvi Pflueger, Kathryn C. Davidson, Ethan Ford, Jose M. Polo, and Michael R. Larcombe
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0301 basic medicine ,Homeobox protein NANOG ,Human Embryonic Stem Cells ,iPSCs ,TINC ,Biology ,Nanog ,Biochemistry ,Article ,single-locus pull-down ,03 medical and health sciences ,0302 clinical medicine ,Genetics ,Humans ,Epigenetics ,Induced pluripotent stem cell ,Gene ,Transcription factor ,RCOR2 ,reprogramming ,Nanog Homeobox Protein ,Cell Biology ,Epigenome ,pluripotency ,3. Good health ,Cell biology ,030104 developmental biology ,Genetic Loci ,Multiprotein Complexes ,transcriptional complex ,Co-Repressor Proteins ,Reprogramming ,030217 neurology & neurosurgery ,Developmental Biology - Abstract
Summary Cellular identity is ultimately dictated by the interaction of transcription factors with regulatory elements (REs) to control gene expression. Advances in epigenome profiling techniques have significantly increased our understanding of cell-specific utilization of REs. However, it remains difficult to dissect the majority of factors that interact with these REs due to the lack of appropriate techniques. Therefore, we developed TINC: TALE-mediated isolation of nuclear chromatin. Using this new method, we interrogated the protein complex formed at the Nanog promoter in embryonic stem cells (ESCs) and identified many known and previously unknown interactors, including RCOR2. Further interrogation of the role of RCOR2 in ESCs revealed its involvement in the repression of lineage genes and the fine-tuning of pluripotency genes. Consequently, using the Nanog promoter as a paradigm, we demonstrated the power of TINC to provide insight into the molecular makeup of specific transcriptional complexes at individual REs as well as into cellular identity control in general., Graphical Abstract, Highlights • TINC allows the isolation of a specific locus for molecular analyses • TINC identified hundreds of proteins at the Nanog promoter • RCOR2 is a component of the pluripotency network in embryonic stem cells • RCOR2 is required for efficient differentiation, Here, Knaupp and colleagues describe TINC, an epigenetic method that allows interrogation of mammalian regulatory complexes at a single-locus resolution. TINC was applied to dissect the transcriptional complex at the Nanog promoter in embryonic stem cells, revealing hundreds of interactors, including RCOR2, hence redefining how this gene is regulated in pluripotency.
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- 2020
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27. Aggression and motivation to disperse in eusocial naked mole-rats, Heterocephalus glaber
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Melissa M. Holmes, D. Ashley Monks, Phoebe D. Edwards, Nagham Kaka, Rebecca Whitney, Ilapreet Toor, and Justine Ziolkowski
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0106 biological sciences ,biology ,Aggression ,Offspring ,media_common.quotation_subject ,05 social sciences ,Zoology ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Eusociality ,Population density ,5. Gender equality ,medicine ,Biological dispersal ,Queen (butterfly) ,0501 psychology and cognitive sciences ,Animal Science and Zoology ,Temperament ,050102 behavioral science & comparative psychology ,medicine.symptom ,reproductive and urinary physiology ,Ecology, Evolution, Behavior and Systematics ,Sex ratio ,media_common - Abstract
Naked mole-rats are eusocial mammals that live in hierarchies consisting of one breeding female, one to three male consorts and their reproductively suppressed offspring. A ‘disperser morph’ subcaste has been suggested with a subset of nonbreeders exhibiting motivation to leave their natal colony and mate with unfamiliar conspecifics. To test the hypotheses that intrinsic colony variables (e.g. population density, sex ratio, queen temperament) influence the dispersal phenotype, and that males and females differ in responsiveness to these variables, we evaluated dispersal behaviour in 17 laboratory colonies. Queen aggression was associated with the number of female, but not male, dispersers, although dispersers were not themselves targets of queen aggression. Female dispersers were more aggressive than their nondispersing sisters, although still less aggressive than queens overall. Following outpairing with an unfamiliar opposite-sex animal, dispersers and nondispersers produced litters at similar rates, demonstrating that motivation to leave the colony, and not anticipatory reproductive maturation, is the key to successful dispersal. Collectively, these data suggest that aggressive naked mole-rat queens motivate dispersal in their daughters and that female dispersers show traits consistent with successful queens (e.g. aggression).
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- 2020
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28. Parkinson's Disease,<scp>NOTCH3</scp>Genetic Variants, and White Matter Hyperintensities
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David P. Breen, Connie Marras, Mario Masellis, Malcolm A. Binns, Robert A. Hegele, Ekaterina Rogaeva, Christopher J.M. Scott, David Grimes, Joel Ramirez, Derek Beaton, Allison A Dilliott, Melissa F. Holmes, Sean P. Symons, Donna Kwan, Paula M. McLaughlin, Stephen C. Strother, Anne Joutel, Miracle Ozzoude, Sandra E. Black, Mandar Jog, Richard H. Swartz, Emily C Evans, and Anthony E. Lang
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0301 basic medicine ,Oncology ,medicine.medical_specialty ,Parkinson's disease ,Population ,Disease ,behavioral disciplines and activities ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,mental disorders ,medicine ,Humans ,CADASIL ,education ,Receptor, Notch3 ,Ontario ,education.field_of_study ,medicine.diagnostic_test ,business.industry ,Genetic variants ,Bayes Theorem ,Neurodegenerative Diseases ,Parkinson Disease ,Magnetic resonance imaging ,medicine.disease ,Magnetic Resonance Imaging ,White Matter ,Hyperintensity ,030104 developmental biology ,Neurology ,Cohort ,Neurology (clinical) ,business ,030217 neurology & neurosurgery - Abstract
BACKGROUND White matter hyperintensities (WMH) on magnetic resonance imaging may influence clinical presentation in patients with Parkinson's disease (PD), although their significance and pathophysiological origins remain unresolved. Studies examining WMH have identified pathogenic variants in NOTCH3 as an underlying cause of inherited forms of cerebral small vessel disease. METHODS We examined NOTCH3 variants, WMH volumes, and clinical correlates in 139 PD patients in the Ontario Neurodegenerative Disease Research Initiative cohort. RESULTS We identified 13 PD patients (~9%) with rare (
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- 2020
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29. Physical Therapy Informed by Acceptance and Commitment Therapy (PACT) Versus Usual Care Physical Therapy for Adults With Chronic Low Back Pain: A Randomized Controlled Trial
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Vari Wileman, Sam Norton, Rona Moss-Morris, Emma Godfrey, Sandra Noonan, Duncan Critchley, Melissa Galea Holmes, Massimo Barcellona, and Lance M. McCracken
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Adult ,Male ,medicine.medical_specialty ,Pact ,Acceptance and commitment therapy ,law.invention ,03 medical and health sciences ,0302 clinical medicine ,Randomized controlled trial ,030202 anesthesiology ,law ,Intervention (counseling) ,Health care ,medicine ,Humans ,Single-Blind Method ,physical therapy ,Acceptance and Commitment Therapy ,business.industry ,Chronic pain ,Middle Aged ,medicine.disease ,Combined Modality Therapy ,Exercise Therapy ,Chronic low back pain ,acceptance and commitment therapy ,Outcome and Process Assessment, Health Care ,Anesthesiology and Pain Medicine ,Neurology ,randomized controlled trial ,Usual care ,Physical therapy ,Feasibility Studies ,Female ,Neurology (clinical) ,Chronic Pain ,business ,Low Back Pain ,030217 neurology & neurosurgery ,Follow-Up Studies - Abstract
Chronic low back pain (CLBP) is a major cause of global disability and improving management is essential. Acceptance and commitment therapy (ACT) is a promising treatment for chronic pain but has not been modified for physical therapy. This randomized controlled trial (RCT) compared physical therapy informed by ACT (PACT) against standard care physical therapy for patients with CLBP. Patients with CLBP (duration ≥12 weeks, mean 3 years) were recruited from physical therapy clinics in 4 UK public hospitals. The Roland-Morris Disability Questionnaire (RMDQ) at 3 months’ post-randomization was the primary outcome. Two hundred forty-eight participants (59% female, mean age = 48) were recruited and 219 (88.3%) completed measures at 3 and/or 12 months’ follow-up. At 3 months, PACT participants reported better outcomes for disability (RMDQ mean difference = 1.07, p =.037, 95% CI = −2.08 to −.07, d =.2), Patient Specific Functioning (p =.008), SF12 physical health (p =.032), and treatment credibility (p
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- 2020
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30. The Curious Case of the Naked Mole-Rat: How Extreme Social and Reproductive Adaptations Might Influence Sex Differences in the Brain
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Phoebe D, Edwards, Ilapreet, Toor, and Melissa M, Holmes
- Abstract
Research in the neurobiology of sex differences is inherently influenced by the study species that are used. Some traditional animal research models, such as rats and mice, show certain sex differences in the brain that have been foundational to neurobiological research. However, subsequent work has demonstrated that these differences are not always generalizable, especially to species with different social structures and sex-associated roles or behaviors. One such example is the naked mole-rat (Heterocephalus glaber), which has an unusual social structure among mammals. Naked mole-rats live in large groups where reproduction is restricted to a dominant female, called the "queen," and often only one breeding male. All other animals in the group, the "subordinates," are socially suppressed from reproduction and remain in a prepubescent state as adults, unless they are removed from the presence of the queen. These subordinates show little to no sex differences in external morphology, neural morphology, or behavior. However, there are a suite of neurobiological differences between subordinate and breeding naked mole-rats. After naked mole-rats attain breeding status, many of the classically sexually differentiated brain regions increase in volume (paraventricular nucleus, medial amygdala, bed nucleus of the stria terminalis). There are additionally social status differences in sex hormone receptor expression in the brain, as well as other changes in gene expression, some of which also show sex differences - though not always in the predicted direction based on other rodent studies. Data from naked mole-rats show that it is critical to consider the evolved social structure of a species when studying sex differences in the brain.
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- 2022
31. The Curious Case of the Naked Mole-Rat: How Extreme Social and Reproductive Adaptations Might Influence Sex Differences in the Brain
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Phoebe D. Edwards, Ilapreet Toor, and Melissa M. Holmes
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- 2022
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32. Secondary thalamic atrophy related to brain infarction may contribute to post-stroke cognitive impairment
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Jieli Geng, Fuqiang Gao, Joel Ramirez, Kie Honjo, Melissa F. Holmes, Sabrina Adamo, Miracle Ozzoude, Gregory M. Szilagyi, Christopher J.M. Scott, Glen T. Stebbins, David L. Nyenhuis, Maged Goubran, and Sandra E. Black
- Subjects
Rehabilitation ,Surgery ,Neurology (clinical) ,Cardiology and Cardiovascular Medicine - Abstract
The thalamus is a key brain hub that is globally connected to many cortical regions. Previous work highlights thalamic contributions to multiple cognitive functions, but few studies have measured thalamic volume changes or cognitive correlates. This study investigates associations between thalamic volumes and post-stroke cognitive function.Participants with non-thalamic brain infarcts (3-42 months) underwent MRI and cognitive testing. Focal infarcts and thalami were traced manually. In cases with bilateral infarcts, the side of the primary infarct volume defined the hemisphere involved. Brain parcellation and volumetrics were extracted using a standardized and previously validated neuroimaging pipeline. Age and gender-matched healthy controls provided normal comparative thalamic volumes. Thalamic atrophy was considered when the volume exceeded 2 standard deviations greater than the controls.Thalamic volumes ipsilateral to the infarct in stroke patients (n=55) were smaller than left (4.4 ± 1.4 vs. 5.4 ± 0.5 cc, p0.001) and right (4.4 ± 1.4 vs. 5.5 ± 0.6 cc, p0.001) thalamic volumes in the controls. After controlling for head-size and global brain atrophy, infarct volume independently correlated with ipsilateral thalamic volume (β= -0.069, p=0.024). Left thalamic atrophy correlated significantly with poorer cognitive performance (β = 4.177, p = 0.008), after controlling for demographics and infarct volumes.Our results suggest that the remote effect of infarction on ipsilateral thalamic volume is associated with global post-stroke cognitive impairment.
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- 2023
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33. Deep Bayesian networks for uncertainty estimation and adversarial resistance of white matter hyperintensity segmentation
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Parisa Mojiri Forooshani, Mahdi Biparva, Emmanuel E. Ntiri, Joel Ramirez, Lyndon Boone, Melissa F. Holmes, Sabrina Adamo, Fuqiang Gao, Miracle Ozzoude, Christopher J. M. Scott, Dar Dowlatshahi, Jane M. Lawrence‐Dewar, Donna Kwan, Anthony E. Lang, Karine Marcotte, Carol Leonard, Elizabeth Rochon, Chris Heyn, Robert Bartha, Stephen Strother, Jean‐Claude Tardif, Sean Symons, Mario Masellis, Richard H. Swartz, Alan Moody, Sandra E. Black, and Maged Goubran
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Neurology ,Radiological and Ultrasound Technology ,Image Processing, Computer-Assisted ,Leukoaraiosis ,Uncertainty ,Humans ,Radiology, Nuclear Medicine and imaging ,Bayes Theorem ,Neurology (clinical) ,Anatomy ,Magnetic Resonance Imaging ,White Matter ,Aged - Abstract
White matter hyperintensities (WMHs) are frequently observed on structural neuroimaging of elderly populations and are associated with cognitive decline and increased risk of dementia. Many existing WMH segmentation algorithms produce suboptimal results in populations with vascular lesions or brain atrophy, or require parameter tuning and are computationally expensive. Additionally, most algorithms do not generate a confidence estimate of segmentation quality, limiting their interpretation. MRI-based segmentation methods are often sensitive to acquisition protocols, scanners, noise-level, and image contrast, failing to generalize to other populations and out-of-distribution datasets. Given these concerns, we propose a novel Bayesian 3D convolutional neural network with a U-Net architecture that automatically segments WMH, provides uncertainty estimates of the segmentation output for quality control, and is robust to changes in acquisition protocols. We also provide a second model to differentiate deep and periventricular WMH. Four hundred thirty-two subjects were recruited to train the CNNs from four multisite imaging studies. A separate test set of 158 subjects was used for evaluation, including an unseen multisite study. We compared our model to two established state-of-the-art techniques (BIANCA and DeepMedic), highlighting its accuracy and efficiency. Our Bayesian 3D U-Net achieved the highest Dice similarity coefficient of 0.89 ± 0.08 and the lowest modified Hausdorff distance of 2.98 ± 4.40 mm. We further validated our models highlighting their robustness on "clinical adversarial cases" simulating data with low signal-to-noise ratio, low resolution, and different contrast (stemming from MRI sequences with different parameters). Our pipeline and models are available at: https://hypermapp3r.readthedocs.io.
- Published
- 2021
34. Disintegration of anterior thalamic radiation fibers in cerebrovascular disease subjects with periventricular white matter hyperintensities leads to lower executive function performance
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Seyyed Mohammad Hassan Haddad, Christopher J.M. Scott, Miracle Ozzoude, Melissa F. Holmes, Stephen R. Arnott, Nuwan D. Nanayakkara, Donna Kwan, Brian Tan, Leanne Casaubon, Jennifer Mandzia, Demetrios J. Sahlas, Gustavo Saposnik, Ayman Hassan, Sandra E. Black, Dar Dowlatshahi, Stephen C. Strother, Richard H. Swartz, Sean Symons, Manuel Montero‐Odasso, and Robert Bartha
- Subjects
Psychiatry and Mental health ,Cellular and Molecular Neuroscience ,Developmental Neuroscience ,Epidemiology ,Health Policy ,Neurology (clinical) ,Geriatrics and Gerontology - Published
- 2021
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35. The naked truth: a comprehensive clarification and classification of current ‘myths’ in naked mole‐rat biology
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Nobuyuki Kutsukake, Jonathan B. Levitt, Kazuo Okanoya, Cynthia Kenyon, Jane Reznick, Andrei Seluanov, Sonja J. Pyott, Clive W. Coen, Nigel C. Bennett, Timothy P. O'Connor, Amanda M. Lauer, Samantha Lagestee, Alyssa Shepard, Daniel P. McCloskey, Diana K. Sarko, J. Graham Ruby, Melissa M. Holmes, Joseph Santos-Sacchi, Walid T. Khaled, Angela Lee, Kazutaka Mogi, Emily N. Vice, Vera Gorbunova, Chris G. Faulkes, Gary N. Bronner, Thomas J. Park, Stanislav Avdieiev, Martha A. Delaney, Xiao Tian, Matthew J. Mason, Kenneth B. Storey, Mary McMahon, Vincent Amoroso, Blazej Andziak, Jorge Azpurua, M. Justin O'Riain, Vikram Narayan, Michael Zions, Kaitlyn N. Lewis Hardell, Mélanie Viltard, Elena D. Zemlemerova, Megan Smith, Ewa Wywial, TzuHua D. Lin, Akiyuki Watarai, Joseph L. Kissil, Ewan St. John Smith, Patrick A. Gibney, Yael H. Edrey, Ned J. Place, Christopher Hine, Yoshimi Kawamura, Gérard Friedlander, Rochelle Buffenstein, Miguel A. Brieño-Enríquez, Katie Podshivalova, Gary R. Lewin, Matthew E. Pamenter, John Larson, Jennifer U. M. Jarvis, Masanori Yamakawa, Christine M. Dengler-Crish, Takefumi Kikusui, Leonid A. Lavrenchenko, Kyoko Miura, Adam B. Salmon, Daniel Frankel, Alison J. Barker, Kawamura, Yoshimi [0000-0002-9864-7974], Lagestee, Samantha [0000-0001-9412-6859], Lewin, Gary R. [0000-0002-2890-6352], Mason, Matthew J. [0000-0001-7845-0720], Narayan, Vikram [0000-0002-6128-7944], Park, Thomas J. [0000-0002-2447-2948], Smith, Ewan St. John [0000-0002-2699-1979], Apollo - University of Cambridge Repository, Perceptual and Cognitive Neuroscience (PCN), Lewin, Gary R [0000-0002-2890-6352], Mason, Matthew J [0000-0001-7845-0720], Park, Thomas J [0000-0002-2447-2948], and Smith, Ewan St John [0000-0002-2699-1979]
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Sociology of scientific knowledge ,VOCAL COMMUNICATION ,Scientific literature ,CRYPTOMYS-DAMARENSIS ,General Biochemistry, Genetics and Molecular Biology ,AGE-RELATED-CHANGES ,Human disease ,SOMATOSENSORY ORGANIZATION ,longevity ,Animals ,cancer ,nociception ,Biology ,Naked mole-rat ,thermoregulation ,ECOPHYSIOLOGICAL RESPONSES ,naked mole‐rat ,biology ,BROWN ADIPOSE-TISSUE ,naked mole-rat ,hypoxia ,Interpretation (philosophy) ,Mole Rats ,eusociality ,Mythology ,PAIN INSENSITIVITY ,Original Articles ,Popular press ,biology.organism_classification ,Epistemology ,BURROW ARCHITECTURE ,LONGEST-LIVING RODENT ,ageing ,Original Article ,Pain insensitivity ,ecology ,Function and Dysfunction of the Nervous System ,General Agricultural and Biological Sciences ,HETEROCEPHALUS-GLABER - Abstract
Funder: Calico Life Sciences, LLC, The naked mole‐rat (Heterocephalus glaber) has fascinated zoologists for at least half a century. It has also generated considerable biomedical interest not only because of its extraordinary longevity, but also because of unusual protective features (e.g. its tolerance of variable oxygen availability), which may be pertinent to several human disease states, including ischemia/reperfusion injury and neurodegeneration. A recent article entitled ‘Surprisingly long survival of premature conclusions about naked mole‐rat biology’ described 28 ‘myths’ which, those authors claimed, are a ‘perpetuation of beautiful, but falsified, hypotheses’ and impede our understanding of this enigmatic mammal. Here, we re‐examine each of these ‘myths’ based on evidence published in the scientific literature. Following Braude et al., we argue that these ‘myths’ fall into four main categories: (i) ‘myths’ that would be better described as oversimplifications, some of which persist solely in the popular press; (ii) ‘myths’ that are based on incomplete understanding, where more evidence is clearly needed; (iii) ‘myths’ where the accumulation of evidence over the years has led to a revision in interpretation, but where there is no significant disagreement among scientists currently working in the field; ( iv ) ‘myths’ where there is a genuine difference in opinion among active researchers, based on alternative interpretations of the available evidence. The term ‘myth’ is particularly inappropriate when applied to competing, evidence‐based hypotheses, which form part of the normal evolution of scientific knowledge. Here, we provide a comprehensive critical review of naked mole‐rat biology and attempt to clarify some of these misconceptions.
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- 2021
36. Neuropeptidergic and Neuroendocrine Systems Underlying Eusociality and the Concomitant Social Regulation of Reproduction in Naked Mole-Rats: A Comparative Approach
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Clive W, Coen, Nigel C, Bennett, Melissa M, Holmes, and Christopher G, Faulkes
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Male ,Mole Rats ,Reproduction ,Animals ,Female ,Oxytocin ,Neurosecretory Systems ,Gonadotropins - Abstract
The African mole-rat family (Bathyergidae) includes the first mammalian species identified as eusocial: naked mole-rats. Comparative studies of eusocial and solitary mole-rat species have identified differences in neuropeptidergic systems that may underlie the phenomenon of eusociality. These differences are found in the oxytocin, vasopressin and corticotrophin-releasing factor (CRF) systems within the nucleus accumbens, amygdala, bed nucleus of the stria terminalis and lateral septal nucleus. As a corollary of their eusociality, most naked mole-rats remain pre-pubertal throughout life because of the presence of the colony's only reproductive female, the queen. To elucidate the neuroendocrine mechanisms that mediate this social regulation of reproduction, research on the hypothalamo-pituitary-gonadal axis in naked mole-rats has identified differences between the many individuals that are reproductively suppressed and the few that are reproductively mature: the queen and her male consorts. These differences involve gonadal steroids, gonadotrophin-releasing hormone-1 (GnRH-1), kisspeptin, gonadotrophin-inhibitory hormone/RFamide-related peptide-3 (GnIH/RFRP-3) and prolactin. The comparative findings in eusocial and solitary mole-rat species are assessed with reference to a broad range of studies on other mammals.
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- 2021
37. Some Exciting Future Directions for Work on Naked Mole-Rats
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Ewan St J, Smith, Thomas J, Park, Melissa M, Holmes, and Rochelle, Buffenstein
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Aging ,Mole Rats ,Animals ,Pain - Abstract
The naked mole-rat is a species of growing research interest. Recent focus on this species from both a biomedical and zoological perspective has led to important discoveries regarding eusociality and ecophysiological and sensory traits associated with life below ground as well as natural protection from variable oxygen availability, acid-induced pain, and the vagaries of aging. These features serve to remind us that many foundational discoveries have arisen using extremophilic organisms and elucidating the mechanisms they employ to survive the harsh environmental conditions they encounter. Investigating these evolved features also facilitates a better understanding of several human disease states that share features with this harsh subterranean milieu. Here, we provide an overview of some unanswered questions and future directions to advance this field, alongside discussion of the tools that could facilitate accelerated progression of research using this enigmatic model.
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- 2021
38. Social Behavior in Naked Mole-Rats: Individual Differences in Phenotype and Proximate Mechanisms of Mammalian Eusociality
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Melissa M, Holmes and Bruce D, Goldman
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Male ,Phenotype ,Mole Rats ,Reproduction ,Individuality ,Animals ,Female ,Social Behavior - Abstract
Naked mole-rats (Heterocephalus glaber) are small rodents native to east Africa, living in subterranean colonies of up to 300 individuals. Within each colony, reproduction is restricted to a single breeding female and 1-3 breeding males; all other colony members are reproductively suppressed and socially subordinate unless removed from the suppressive cues of the colony. Due to their striking reproductive skew, naked mole-rats are often considered eusocial mammals. Consistent with this idea, there are behavioral specializations and at least some evidence for morphological distinctions within and between the breeding and non-breeding members of the colony. Importantly, naked mole-rats show plasticity in their behavioral phenotype whereby changes in the social environment influence expression of both type and amount of social behavior. Thus, naked mole-rats provide the opportunity to examine the proximate mechanisms controlling individual differences in social behavior, shedding light on how mammals live in complex social groups.
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- 2021
39. Deep Bayesian networks for uncertainty estimation and adversarial resistance of white matter hyperintensity segmentation
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Robert Bartha, Stephen C. Strother, Fuqiang Gao, Elizabeth Rochon, Sean P. Symons, Melissa F. Holmes, Emmanuel E. Ntiri, Miracle Ozzoude, Donna Kwan, Chris Heyn, Karine Marcotte, Maged Goubran, Jean-Claude Tardif, Anthony E. Lang, Christopher J.M. Scott, Jane M. Lawrence-Dewar, Mahdi Biparva, Sandra E. Black, Joel Ramirez, Richard H. Swartz, Lyndon Boone, Sabrina Adamo, Alan R. Moody, Parisa Mojiri Forooshani, Dar Dowlatshahi, Mario Masellis, and Carol Leonard
- Subjects
Hausdorff distance ,Robustness (computer science) ,business.industry ,Computer science ,Bayesian probability ,Bayesian network ,Segmentation ,Pattern recognition ,Artificial intelligence ,Cognitive decline ,business ,Convolutional neural network ,Hyperintensity - Abstract
White matter hyperintensities (WMH) are frequently observed on structural neuroimaging of elderly populations and are associated with cognitive decline and increased risk of dementia. Many existing WMH segmentation algorithms produce suboptimal results in populations with vascular lesions or brain atrophy, or require parameter tuning and are computationally expensive. Additionally, most algorithms do not generate a confidence estimate of segmentation quality, limiting their interpretation. MRI-based segmentation methods are often sensitive to acquisition protocols, scanners, noise-level, and image contrast, failing to generalize to other populations and out-of-distribution datasets. Given these concerns, we propose a novel Bayesian 3D Convolutional Neural Network (CNN) with a U-Net architecture that automatically segments WMH, provides uncertainty estimates of the segmentation output for quality control and is robust to changes in acquisition protocols. We also provide a second model to differentiate deep and periventricular WMH. 432 subjects were recruited to train the CNNs from four multi-site imaging studies. A separate test set of 158 subjects was used for evaluation, including an unseen multi-site study. We compared our model to two established state-of-the-art techniques (BIANCA and DeepMedic), highlighting its accuracy and efficiency. Our Bayesian 3D U-Net achieved the highest Dice similarity coefficient of 0.89 ± 0.08 and the lowest modified Hausdorff distance of 2.98 ± 4.40 mm. We further validated our models highlighting their robustness on ‘clinical adversarial cases’ simulating data with low signal-to-noise ratio, low resolution, and different contrast (stemming from MRI sequences with different parameters). Our pipeline and models are available at: https://hypermapp3r.readthedocs.io
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- 2021
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40. Investigating the Contribution of White Matter Hyperintensities and Cortical Thickness to Empathy in Neurodegenerative and Cerebrovascular Diseases
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Jennifer Mandzia, David Grimes, John Turnbull, Brenda Varriano, Corinne E. Fischer, Ondri Investigators, Derek Beaton, Angela Roberts, Christopher J.M. Scott, Maged Goubran, Mario Masellis, Demetrios J. Sahlas, Ayman Hassan, Donna Kwan, Dallas Seitz, David P. Breen, Andrew Frank, Richard H. Swartz, Sean P. Symons, Connie Marras, Carmela Tartaglia, Fuqiang Gao, Gustavo Saposnik, Leanne K. Casaubon, Michael Borrie, Morris Freedman, Manuel Montero-Odasso, Thomas Steeves, Joel Ramirez, Paula M. McLaughlin, Marvin Chum, Kelly M Sunderland, Brian Tan, Mandar Jog, David F. Tang-Wai, Stephen R. Arnott, Bruce G. Pollock, Jennifer S. Rabin, Robert Bartha, Anthony E. Lang, Agessandro Abrahao, Miracle Ozzoude, Lorne Zinman, Sanjeev Kumar, Christen Shoesmith, Elizabeth Finger, Stephen H. Pasternak, Dar Dowlatshahi, Sandra E. Black, Stephen C. Strother, Tarek K. Rajji, and Melissa F. Holmes
- Subjects
medicine.medical_specialty ,business.industry ,media_common.quotation_subject ,Empathy ,Disease ,Audiology ,medicine.disease ,behavioral disciplines and activities ,Hyperintensity ,Atrophy ,mental disorders ,Interpersonal Reactivity Index ,medicine ,Alzheimer's disease ,Amyotrophic lateral sclerosis ,business ,Frontotemporal dementia ,media_common - Abstract
Introduction: Change in empathy is an increasingly recognised symptom of neurodegenerative diseases and contributes to caregiver burden and patient distress. Empathy impairment has been associated with brain atrophy but its relationship to white matter hyperintensities (WMH) is unknown. We aimed to investigate the relationships amongst WMH, brain atrophy, and empathy deficits in neurodegenerative and cerebrovascular diseases.Methods: 513 participants with Alzheimer’s Disease/Mild Cognitive Impairment, Amyotrophic Lateral Sclerosis, Frontotemporal Dementia (FTD), Parkinson’s Disease, or Cerebrovascular Disease (CVD) were included. Empathy was assessed using the Interpersonal Reactivity Index. WMH were measured using a semi-automatic segmentation and FreeSurfer was used to measure cortical thickness.Results: A heterogeneous pattern of cortical thinning was found between groups, with FTD showing thinning in frontotemporal regions and CVD in left superior parietal, left insula, and left postcentral. Results from both univariate and multivariate analyses revealed that several variables were associated with empathy, particularly cortical thickness in the fronto-insulo-temporal and cingulate regions, sex(female), global cognition, and right parietal and occipital WMH.Conclusions: Our results suggest that cortical atrophy and WMH may be associated with empathy deficits in neurodegenerative and cerebrovascular diseases. Future work should consider investigating the longitudinal effects of WMH and atrophy on empathy deficits in neurodegenerative and cerebrovascular diseases.
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- 2021
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41. Hippocampal segmentation for brains with extensive atrophy using three‐dimensional convolutional neural networks
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Maged Goubran, Anne L. Martel, Miracle Ozzoude, Christopher J.M. Scott, Fuqiang Gao, Joel Ramirez, Sabrina Adamo, Walter Swardfager, Richard H. Swartz, Sean M. Nestor, Mario Masellis, Bradley J. MacIntosh, Hassan Akhavein, Melissa F. Holmes, Emmanuel E. Ntiri, and Sandra E. Black
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Male ,hippocampus ,Computer science ,Neuroimaging ,Convolutional neural network ,050105 experimental psychology ,03 medical and health sciences ,Technical Report ,0302 clinical medicine ,Atrophy ,Robustness (computer science) ,convolutional neural networks ,Image Interpretation, Computer-Assisted ,medicine ,Humans ,Dementia ,0501 psychology and cognitive sciences ,Radiology, Nuclear Medicine and imaging ,image segmentation ,Aged ,Radiological and Ultrasound Technology ,business.industry ,Deep learning ,05 social sciences ,deep learning ,Pattern recognition ,Image segmentation ,medicine.disease ,Magnetic Resonance Imaging ,Neurology ,Outlier ,Female ,Neural Networks, Computer ,Neurology (clinical) ,Artificial intelligence ,Anatomy ,business ,brain atrophy ,030217 neurology & neurosurgery ,Frontotemporal dementia - Abstract
Hippocampal volumetry is a critical biomarker of aging and dementia, and it is widely used as a predictor of cognitive performance; however, automated hippocampal segmentation methods are limited because the algorithms are (a) not publicly available, (b) subject to error with significant brain atrophy, cerebrovascular disease and lesions, and/or (c) computationally expensive or require parameter tuning. In this study, we trained a 3D convolutional neural network using 259 bilateral manually delineated segmentations collected from three studies, acquired at multiple sites on different scanners with variable protocols. Our training dataset consisted of elderly cases difficult to segment due to extensive atrophy, vascular disease, and lesions. Our algorithm, (HippMapp3r), was validated against four other publicly available state‐of‐the‐art techniques (HippoDeep, FreeSurfer, SBHV, volBrain, and FIRST). HippMapp3r outperformed the other techniques on all three metrics, generating an average Dice of 0.89 and a correlation coefficient of 0.95. It was two orders of magnitude faster than some of the tested techniques. Further validation was performed on 200 subjects from two other disease populations (frontotemporal dementia and vascular cognitive impairment), highlighting our method's low outlier rate. We finally tested the methods on real and simulated “clinical adversarial” cases to study their robustness to corrupt, low‐quality scans. The pipeline and models are available at: https://hippmapp3r.readthedocs.ioto facilitate the study of the hippocampus in large multisite studies.
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- 2019
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42. Screening school-age children for developmental language disorder in primary care
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Cesar Ochoa-Lubinoff, Melissa P. Holmes, and Kerry Danahy Ebert
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Male ,Parents ,Developmental language disorder ,Diagnostic accuracy ,Primary care ,Article ,Language and Linguistics ,Speech and Hearing ,Surveys and Questionnaires ,Humans ,Mass Screening ,Medicine ,Language Development Disorders ,Screening tool ,Child ,Reliability (statistics) ,Language Tests ,School age child ,Primary Health Care ,Research and Theory ,business.industry ,LPN and LVN ,Identification (information) ,Otorhinolaryngology ,Female ,business ,Clinical psychology - Abstract
PURPOSE: To evaluate the feasibility, preliminary diagnostic accuracy, and reliability of a screening tool for Developmental Language Disorder (DLD) in early school-age children seen in a pediatric primary care setting. METHOD: Sixty-six children aged 6- to 8-years attending well-child visits at a large urban pediatric clinic participated. Parents completed a 5-item questionnaire and children completed a 10-item sentence repetition task. A subset of participants (n = 25) completed diagnostic testing for DLD. Exploratory cut-offs were developed for the parent questionnaire, the child sentence repetition task, and the combined score. RESULT: The screening tool could be reliably implemented in two minutes by personnel without specialty training. The best diagnostic accuracy measures were obtained by combining the parent questionnaire and child sentence repetition task. The tool showed strong internal consistency, but the parent and child scores showed only moderate agreement. CONCLUSION: The screening tool is promising for utilisation in primary care clinical settings, but should first be validated in larger and more diverse samples. Both the parent and child components of the screening contributed to the preliminary findings of high sensitivity and specificity found in this study. Screening for DLD in school age children can increase awareness of an under-recognised disorder.
- Published
- 2019
- Full Text
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43. A randomized controlled feasibility trial of a home-based walking behavior–change intervention for people with intermittent claudication
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Lindsay Bearne, John Weinman, and Melissa Galea Holmes
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Male ,medicine.medical_specialty ,Psychological intervention ,Walking ,030204 cardiovascular system & hematology ,law.invention ,Peripheral Arterial Disease ,03 medical and health sciences ,0302 clinical medicine ,Randomized controlled trial ,Quality of life ,law ,Intervention (counseling) ,Humans ,Medicine ,Outpatient clinic ,Aged ,030504 nursing ,business.industry ,Behavior change ,Intermittent Claudication ,Home Care Services ,Intermittent claudication ,Exercise Therapy ,Medical–Surgical Nursing ,Pedometer ,Quality of Life ,Physical therapy ,Feasibility Studies ,Female ,medicine.symptom ,0305 other medical science ,business - Abstract
Walking treatment is recommended for improving intermittent claudication (IC), a debilitating symptom of leg pain caused by peripheral arterial disease. However, center-based exercise programs offered in a community or hospital setting are often not implemented or adhered to. We developed a home-delivered behavior-change intervention, MOtivating Structured walking Activity in Intermittent Claudication (MOSAIC), to increase walking in people with IC. A feasibility randomized controlled trial with nested qualitative interviews involving a subsample of trial participants was conducted. Feasibility criteria evaluated participant recruitment and retention; suitability of proposed outcome measures; and acceptability and adherence to the intervention and trial. Participants (adults aged ≥18 years diagnosed with IC identified from vascular outpatient clinics) were randomized 1:1 to receive MOSAIC treatment (two 60-minute home-based sessions and two 20-minute booster telephone calls incorporating behavior-change techniques) or an attention-control comparison. Outcomes (baseline and 16-week follow-up) included the 6-minute walking distance (meters), pedometer-assessed daily walking activity (steps/d), health-related quality of life, physical functioning, and beliefs about walking treatment, peripheral arterial disease, and self-regulatory processes. Twenty-four participants (mean age: 66.8 ± 9.4 years, 79% male) were included. Feasibility criteria achieved were recruitment rate (25%), participant retention (92%), and adherence to assigned treatment or attention-control sessions (71%). Missing data rates were
- Published
- 2019
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44. Problematizing Current Vocabulary Instruction Frameworks
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Shabina K. Kavimandan, Socorro Herrera, and Melissa A. Holmes
- Subjects
Funds of knowledge ,Vocabulary ,media_common.quotation_subject ,Mathematics education ,Current (fluid) ,Psychology ,media_common - Published
- 2019
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45. Hormones do not maketh the mole-rat: No steroid hormone signatures of subordinate behavioral phenotypes
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Ilapreet, Toor, Mariela, Faykoo-Martinez, Phoebe D, Edwards, Rudy, Boonstra, and Melissa M, Holmes
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Behavioral Neuroscience ,Phenotype ,Endocrinology ,Estradiol ,Endocrine and Autonomic Systems ,Mole Rats ,Animals ,Female ,Testosterone ,Dehydroepiandrosterone ,Progesterone - Abstract
In some cooperatively breeding groups, individuals have distinct behavioral characteristics that are often stable and predictable across time. However, in others, as in the eusocial naked mole-rat, evidence for behavioral phenotypes is ambiguous. Here, we study whether the naked mole-rat can be divided into discrete phenotypes and if circulating hormone concentrations underpin these differences. Naked mole-rat colonies consist of a single breeding female and large numbers of non-reproductive subordinates that in some cases can exceed several hundred in a colony. The subordinates can potentially be divided into soldiers, who defend the colony; workers, who maintain it; and dispersers, who want to leave it. We established six colonies de novo, tracked them over three years, and assessed the behavior and hormone concentrations of the subordinates. We found that soldiers tended to be from earlier litters and were higher ranked compared to workers, whereas dispersers were distributed throughout litters and rankings. There was no difference in estradiol, testosterone, or dehydroepiandrosterone (DHEA) concentrations among phenotypes. Progesterone concentrations were higher in soldiers, but this difference appeared to be driven by a few individuals. Principal component analysis demonstrated that soldiers separated into a discrete category relative to workers/dispersers, with the highest ranked loadings being age, body mass, and testosterone concentrations. However, the higher testosterone in soldiers was correlated with large body size instead of strictly behavioral phenotype. Workers and dispersers have more overlap with each other and no hormonal differences. Thus the behavioral variation in subordinate naked mole-rats is likely not driven by circulating steroid hormone concentrations, but rather it may stem from alternative neural and/or neuroendocrine mechanisms.
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- 2022
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46. Queen Pregnancy Increases Group Estradiol Levels in Cooperatively Breeding Naked Mole-Rats
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Phoebe D. Edwards, Gabriela F Mastromonaco, Melissa M. Holmes, and Daphne A Arguelles
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0106 biological sciences ,Male ,Reproductive suppression ,media_common.quotation_subject ,Zoology ,Plant Science ,Biology ,010603 evolutionary biology ,01 natural sciences ,Hormonal Change ,Queen (playing card) ,03 medical and health sciences ,Pregnancy ,Cooperative breeding ,medicine ,Animals ,030304 developmental biology ,media_common ,0303 health sciences ,Estradiol ,Aggression ,Mole Rats ,Reproduction ,Social cue ,medicine.disease ,Animal Science and Zoology ,Female ,medicine.symptom - Abstract
Synopsis For cooperative species, there can be great value in the synchronization of physiological states to coordinate group behavioral states. This is evident in naked mole-rats (Heterocephalus glaber), which have the most extreme form of cooperative breeding in mammals. Colonies have a single reproductive female, “the queen,” and 1–3 breeding males. These breeders are supported by adult “subordinates,” which are all socially suppressed into a pre-pubertal state. Subordinates cooperate in colony maintenance, defense, and alloparental care. Prior work has reported that there may be social sharing of hormones among individuals in the colony because when the queen is pregnant, subordinates of both sexes develop enlarged nipples and female subordinates can develop vaginal perforation. We sought to document the hormonal changes and mechanisms behind these observations. We found that subordinate estradiol levels were elevated during the queen’s pregnancy and were correlated with queen levels. To determine if this occurs by direct hormone-sharing, where group members uptake the hormones of conspecifics through excreta or the skin, we then tested whether treating a single subordinate in the colony with estradiol would induce the same effect in other colony members. It did not, which indicates that the influence on group estradiol levels may be specific to cues from the queen. These queen cues may be behavioral in nature, as we found that queens were less aggressive during pregnancy, which prior work has suggested may relax reproductive suppression of subordinates. Yet, levels of queen aggression alone were not associated, or were weakly associated, with their colony’s estradiol levels, though our sample size examining this particular relationship was low. This is suggestive that additional queen cues of reproductive status, beyond just aggression, may be relevant in influencing the subordinate hormonal change, or that the relationship between aggression and colony estradiol levels is more subtle and would need to be elucidated with a larger sample size. These results have implications for how cooperative breeders coordinate reproduction and alloparental care, and how social cues can influence individual and group physiology.
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- 2021
47. Abstract P359: Secondary Thalamic Atrophy Related to Brain Infarction is Associated With Post-Stroke Cognitive Impairment
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Christopher J.M. Scott, Jieli Geng, Sabrina Adamo, Maged Goubran, Miracle Ozzoude, Fuqiang Gao, Melissa M. Holmes, Sandra E. Black, Joel Ramirez, David Nyenhuis, and Kie Honjo
- Subjects
Advanced and Specialized Nursing ,medicine.medical_specialty ,business.industry ,medicine.disease ,Atrophy ,Brain infarction ,Internal medicine ,Post stroke ,medicine ,Cardiology ,Neurology (clinical) ,Cardiology and Cardiovascular Medicine ,business ,Cognitive impairment - Abstract
Background: The thalamus is globally connected to many brain regions. Previous work highlights thalamic contributions to multiple cognitive functions, but few studies have measured thalamic volume changes or explored correlates of such changes with post-stroke cognition. Hence this study investigates possible associations of thalamic volumes with post-stroke cognitive functions. Methods: Participants with brain infarcts (6-42 months) underwent volumetric brain MRI and cognitive testing, including the Montreal Cognitive Assessment (MoCA). Focal Brain infarcts and thalami were traced manually. If the patient had bilateral infarcts, the side of the primary infarct volume defined the hemisphere involved. Brain parcellation and volumetrics used our comprehensive semi-automatic brain region and vascular lesion extraction pipeline (Ramirez, Neuroimage, 2011). MRI in 24 age and gender-matched healthy people provided normal comparative thalamic volumes. Thalamic atrophy was defined by percent thalamic volume loss in the stroke hemisphere compared to the other side. Spearman correlation assessed relationships between thalamic and infarct volumes and MoCA scores. Logistic regression analysis assessed whether thalamic atrophy correlated with MoCA score. Results: Thalami volumes ipsilateral to the infarct in stroke patients (n=55) were smaller than left (4.4 ± 1.4 vs. 5.4 ± 0.8 cc, p = 0.012) and right (4.4 ± 1.4 vs. 5.3 ± 0.7 cc, p = 0.024) thalamic volumes in the controls. Thalamic volumes were inversely correlated with ipsilateral infarct volumes (r = -0.384, p = 0.004). After controlling for head-size and brain atrophy, infarct volume independently correlated with ipsilateral thalamic volume s (β= -0.068, P=0.026), and only frontal infarcts (β = 2.300, p = 0.021) independently contributed to > 15% ipsilateral thalamic atrophy. Left thalamic atrophy of > 10% correlated significantly with poorer MoCA performance (β = 3.139, p = 0.023), after controlling for demographics and infarct volumes. Conclusions: Our results suggest that remote effects of infarction on ipsilateral thalamic volume, presumably related to disrupted thalamic-cortical interconnectivity, is associated with a commonly used metric of post-stroke cognitive impairment.
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- 2021
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48. Maternal effects in mammals: Broadening our understanding of offspring programming
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Sanoji Wijenayake, Patrick O. McGowan, Laura K. McCaw, Phoebe D. Edwards, Melissa M. Holmes, Rudy Boonstra, and Sophia G. Lavergne
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0301 basic medicine ,Mammals ,Endocrine and Autonomic Systems ,Offspring ,Photoperiod ,Immune regulation ,Maternal effect ,Research opportunities ,Disease ,Biology ,Ecological systems theory ,Phenotype ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Evolutionary biology ,Pregnancy ,Animals ,Female ,Microbiome ,Maternal Inheritance ,030217 neurology & neurosurgery ,Melatonin - Abstract
The perinatal period is a sensitive time in mammalian development that can have long-lasting consequences on offspring phenotype via maternal effects. Maternal effects have been most intensively studied with respect to two major conditions: maternal diet and maternal stress. In this review, we shift the focus by discussing five major additional maternal cues and their influence on offspring phenotype: maternal androgen levels, photoperiod (melatonin), microbiome, immune regulation, and milk composition. We present the key findings for each of these topics in mammals, their mechanisms of action, and how they interact with each other and with the maternal influences of diet and stress. We explore their impacts in the contexts of both predictive adaptive responses and the developmental origins of disease, identify knowledge gaps and research opportunities in the field, and place a particular emphasis on the application and consideration of these effects in non-model species and natural ecological systems.
- Published
- 2021
49. MRI-visible perivascular space volumes, sleep duration and daytime dysfunction in adults with cerebrovascular disease
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Joel Ramirez, Melissa F. Holmes, Courtney Berezuk, Donna Kwan, Brian Tan, Derek Beaton, Christopher J.M. Scott, Miracle Ozzoude, Fuqiang Gao, Di Yu, Walter Swardfager, Jane Lawrence-Dewar, Dar Dowlatshahi, Gustavo Saposnik, Mark I. Boulos, Brian J. Murray, Sean Symons, Robert Bartha, Sandra E. Black, Richard H. Swartz, Andrew Lim, Michael Strong, Peter Kleinstiver, Natalie Rashkovan, Susan Bronskill, Michael Borrie, Elizabeth Finger, Corinne Fischer, Andrew Frank, Morris Freedman, Sanjeev Kumar, Stephen Pasternak, Bruce Pollock, Tarek Rajji, Dallas Seitz, David Tang-Wai, Carmela Tartaglia, Brenda Varriano, Agessandro Abrahao, Marvin Chum, Christen Shoesmith, John Turnbull, Lorne Zinman, Julia Fraser, Bill McIlroy, Ben Cornish, Karen Van Ooteghem, Frederico Faria, Manuel Montero-Odasso, Yanina Sarquis-Adamson, Alanna Black, Barry Greenberg, Wendy Hatch, Chris Hudson, Elena Leontieva, Ed Margolin, Efrem Mandelcorn, Faryan Tayyari, Sherif Defrawy, Don Brien, Ying Chen, Brian Coe, Doug Munoz, Alisia Bonnick, Leanne Casaubon, Ayman Hassan, Jennifer Mandzia, Demetrios Sahlas, David Breen, David Grimes, Mandar Jog, Anthony Lang, Connie Marras, Mario Masellis, Tom Steeves, Dennis Bulman, Allison Ann Dilliott, Mahdi Ghani, Rob Hegele, John Robinson, Ekaterina Rogaeva, Sali Farhan, Rob Bartha, Hassan Haddad, Nuwan Nanayakkara, Christopher Scott, Melissa Holmes, Sabrina Adamo, Mojdeh Zamyadi, Stephen Arnott, Malcolm Binns, Wendy Lou, Pradeep Raamana, Stephen Strother, Kelly Sunderland, Athena Theyers, Abiramy Uthirakumaran, Guangyong (GY) Zou, Sujeevini Sujanthan, David Munoz, Roger A. Dixon, John Woulfe, Brian Levine, Paula McLaughlin, J.B. Orange, Alicia Peltsch, Angela Roberts, and Angela Troyer
- Subjects
Adult ,medicine.medical_specialty ,Perivascular spaces ,Disease ,Pittsburgh Sleep Quality Index ,Internal medicine ,Basal ganglia ,medicine ,Animals ,Humans ,Perivascular space ,Depression (differential diagnoses) ,Ontario ,business.industry ,Sleep apnea ,Neurodegenerative Diseases ,General Medicine ,Sleep quality ,medicine.disease ,Sleep in non-human animals ,Magnetic Resonance Imaging ,Small vessel disease ,Cerebrovascular Disorders ,medicine.anatomical_structure ,Virchow-Robin ,Cerebral Small Vessel Diseases ,cardiovascular system ,Cardiology ,Glymphatic system ,Vascular cognitive impairment ,business ,Sleep ,Glymphatic System - Abstract
Objectives Recent studies suggest that interindividual genetic differences in glial-dependent CSF flow through the brain parenchyma, known as glymphatic flow, may trigger compensatory changes in human sleep physiology. In animal models, brain perivascular spaces are a critical conduit for glymphatic flow. We tested the hypothesis that MRI-visible PVS volumes, a putative marker of perivascular dysfunction, are associated with compensatory differences in real-world human sleep behavior. Methods We analyzed data from 152 cerebrovascular disease patients from the Ontario Neurodegenerative Disease Research Initiative (ONDRI). PVS volumes were measured using 3T-MRI. Self-reported total sleep time, time in bed, and daytime dysfunction were extracted from the Pittsburgh Sleep Quality Index. Results Individuals with greater PVS volumes reported longer time in bed (+0.85 h per log10 proportion of intracranial volume (ICV) occupied by PVS, SE = 0.30, p = 0.006) and longer total sleep times (+0.70 h per log10 proportion of ICV occupied by PVS volume, SE = 0.33, p = 0.04), independent of vascular risk factors, sleep apnea, nocturnal sleep disturbance, depression, and global cognitive status. Further analyses suggested that the positive association between PVS volumes and total sleep time was mediated by greater time in bed. Moreover, despite having on average greater total sleep times, individuals with greater basal ganglia PVS volumes were more likely to report daytime dysfunction (OR 5.63 per log10 proportion of ICV occupied by PVS, 95% CI: 1.38–22.26, p = 0.018). Conclusions Individuals with greater PVS volumes spend more time in bed, resulting in greater total sleep time, which may represent a behavioral compensatory response to perivascular space dysfunction.
- Published
- 2021
50. Single-cell mapper (scMappR): using scRNA-seq to infer the cell-type specificities of differentially expressed genes
- Author
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Dustin J. Sokolowski, Cadia Chan, Lauren Erdman, Mariela Faykoo-Martinez, Helen He Zhu, Huayun Hou, Anna Goldenberg, Michael D. Wilson, and Melissa M. Holmes
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AcademicSubjects/SCI01140 ,Cell type ,AcademicSubjects/SCI01060 ,Cell ,Population ,genetic processes ,AcademicSubjects/SCI00030 ,Computational biology ,Biology ,AcademicSubjects/SCI01180 ,03 medical and health sciences ,0302 clinical medicine ,Gene expression ,medicine ,Methods Article ,natural sciences ,education ,030304 developmental biology ,0303 health sciences ,education.field_of_study ,Regeneration (biology) ,RNA ,R package ,medicine.anatomical_structure ,Differentially expressed genes ,AcademicSubjects/SCI00980 ,030217 neurology & neurosurgery - Abstract
RNA sequencing (RNA-seq) is widely used to identify differentially expressed genes (DEGs) and reveal biological mechanisms underlying complex biological processes. RNA-seq is often performed on heterogeneous samples and the resulting DEGs do not necessarily indicate the cell-types where the differential expression occurred. While single-cell RNA-seq (scRNA-seq) methods solve this problem, technical and cost constraints currently limit its widespread use. Here we present single cell Mapper (scMappR), a method that assigns cell-type specificity scores to DEGs obtained from bulk RNA-seq by leveraging cell-type expression data generated by scRNA-seq and existing deconvolution methods. After evaluating scMappR with simulated RNA-seq data and benchmarking scMappR using RNA-seq data obtained from sorted blood cells, we asked if scMappR could reveal known cell-type specific changes that occur during kidney regeneration. scMappR appropriately assigned DEGs to cell-types involved in kidney regeneration, including a relatively small population of immune cells. While scMappR can work with user-supplied scRNA-seq data, we curated scRNA-seq expression matrices for ∼100 human and mouse tissues to facilitate its stand-alone use with bulk RNA-seq data from these species. Overall, scMappR is a user-friendly R package that complements traditional differential gene expression analysis of bulk RNA-seq data.
- Published
- 2021
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